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version 1.4, 2001/02/10 18:38:37 version 1.19, 2002/11/15 23:36:58
Line 8 Line 8
 Scott Harrison  Scott Harrison
 </P>  </P>
 <P>  <P>
 Last updated: 02/10/2001  Last updated: 02/15/2001
 </P>  </P>
 <P>  <P>
 This file describes issues associated with LON-CAPA  This file describes issues associated with LON-CAPA
 and a SQL database.  and a SQL database.
 </P>  </P>
 <H3>Latest HOWTO</H3>  <H2>Latest HOWTO</H2>
 <P>  <P>
 <UL>  <UL>
   <LI>Important notes
 <LI>Current status of documentation</LI>  <LI>Current status of documentation</LI>
 <LI>Current status of implementation</LI>  <LI>Current status of implementation</LI>
 <LI>Purpose within LON-CAPA</LI>  <LI>Purpose within LON-CAPA</LI>
   <LI>Dependencies</LI>
 <LI>Installation</LI>  <LI>Installation</LI>
 <LI>Installation from source</LI>  <LI>Installation from source</LI>
 <LI>Configuration (automated)</LI>  <LI>Configuration (automated)</LI>
Line 28  and a SQL database. Line 30  and a SQL database.
 <LI>Example sections of code relevant to LON-CAPA</LI>  <LI>Example sections of code relevant to LON-CAPA</LI>
 </UL>  </UL>
 </P>  </P>
 <H3>Current status of documentation</H3>  <H2>Important notes</H2>
   <P>
   The current database is implemented assuming a non-adjustable
   architecture involving these data fields (specific to each version
   of a resource).
   <UL>
   <LI>title</LI>
   <LI>author</LI>
   <LI>subject</LI>
   <LI>notes</LI>
   <LI>abstract</LI>
   <LI>mime</LI>
   <LI>language</LI>
   <LI>creationdate</LI>
   <LI>lastrevisiondate</LI>
   <LI>owner</LI>
   <LI>copyright</LI>
   </UL>
   </P>
   <P>
   Security occurs as a function of the user 'www',
   and the permissions on the files in the /usr/local/mysql
   directory.  (These files and directories should
   be 700, 600, 500, 400, etc; not allow access to anyone
   but user 'www'.)
   </P>
   <P>
   These commands create the loncapameta database.
   <PRE>
   mysql> CREATE DATABASE IF NOT EXISTS loncapa;
   mysql> USE loncapa;
   mysql> CREATE TABLE IF NOT EXISTS metadata (title TEXT, author TEXT, subject TEXT, url TEXT, keywords TEXT, version TEXT, notes TEXT, abstract TEXT, mime TEXT, language TEXT, creationdate DATETIME, lastrevisiondate DATETIME, owner TEXT, copyright TEXT, FULLTEXT idx_title (title), FULLTEXT idx_author (author), FULLTEXT idx_subject (subject), FULLTEXT idx_url (url), FULLTEXT idx_keywords (keywords), FULLTEXT idx_version (version), FULLTEXT idx_notes (notes), FULLTEXT idx_abstract (abstract), FULLTEXT idx_mime (mime), FULLTEXT idx_language (language), FULLTEXT idx_owner (owner), FULLTEXT idx_copyright (copyright)) TYPE=MYISAM;
   mysql> INSERT INTO metadata VALUES ('The Structure of Scientific Revolutions','Thomas S. Kuhn','scientific philosophy','/res/msu/shh1/poobah2.html','aphorisms, theories, paradigm, revolution','current','still developing','This famous book stands out in contrast to the more rigid theories of Popper.','html','seniso','1999-03-03 12:34:56','1999-03-03 3:12:00','shh1@msu.edu','default');
   mysql> SELECT * FROM metadata WHERE title REGEXP "1";
   </PRE>
   </P>
   <P>
   Current time values for things.
   <PRE>
   fenchurch.lite.msu.edu
   Mem:    46812K av,   45632K used,    1180K free,   14756K shrd,    4292K buff
   Swap: 1148608K av,   11260K used, 1137348K free                   13244K cached
   
   Red Hat Linux release 6.2 (Zoot)
   Kernel 2.2.16-3 on an i586
   </PRE>
   <BR>Q: How big are data records in test database? A: on average, 1000 bytes each, medline records from PubMed.
   <BR>Q: How big is the biggest field? A: on average, 838 bytes each
   <BR>Q: How much time to insert 5284 medline records into database?
   A: 600 seconds
   <BR>Q: What about when using "speed-technique" on page 130? A: 689 seconds (weird, eh?)
   <BR>Q: What about REGEXP searching? A: about 1-2 seconds for small fields;
   10 to 20 seconds for REGEXP search on "abstract" field
   <BR>Q: What about FULLTEXT indexing? A: about 6 seconds for abstract field.
   
   </P>
   <P>
   An important quote from the manual:
   <BLOCKQUOTE>
   In MySQL Version 3.23.23 or later, you can also create special FULLTEXT indexes. They are used for full-text search. Only the MyISAM table type supports FULLTEXT indexes. They can be created only from
   VARCHAR and TEXT columns. Indexing always happens over the entire column and partial indexing is not supported. See section 25.2 MySQL Full-text Search for details. 
   </BLOCKQUOTE>
   </P>
   <P>
   I plan on using a MyISAM table type with 11 metadata fields of column 
   type=TEXT.
   </P>
   <P>
   It might be worthwhile to look at /usr/local/mysql/manual.html.
   It is quite in depth.
   </P>
   <H2>Current status of documentation</H2>
 <P>  <P>
 I am going to begin documentation by inserting what notes  I am going to begin documentation by inserting what notes
 I have into this file.  I will be subsequently rearranging  I have into this file.  I will be subsequently rearranging
Line 39  current status of everything is that it Line 112  current status of everything is that it
 been minimally tested, but things need to be cleaned up  been minimally tested, but things need to be cleaned up
 and checked again!  and checked again!
 </P>  </P>
 <H3>Current status of implementation</H3>  <H2>Current status of implementation</H2>
   <P>
   Need to
   <UL>
   <LI>Installation: Fix binary file listings for user permissions and ownership.
   <LI>Installation: Make sure sql server starts, and if database does not
   exist, then create. (/etc/rc.d).
   <LI>Processes: Make sure loncron initiates lonsql on library machines.
   <LI>Read in metadata from right place periodically.
   <LI>Implement tested perl module handler.
   </UL>
 <P>  <P>
 Right now, a lot of "feasibility" work has been done.  Right now, a lot of "feasibility" work has been done.
 Recipes for manual installation and configuration have  Recipes for manual installation and configuration have
 been gathered.  Network connectivity of lond->lonsql->lond->lonc  been gathered.  Network connectivity of lond->lonsql->lond->lonc
 type tests have been performed.  A binary installation  type tests have been performed.  A binary installation
 has been compiled in an RPM (LON-CAPA-mysql).  has been compiled in an RPM (LON-CAPA-mysql, with perl components
   a part of LON-CAPA-systemperl).
 The most lacking test in terms of feasibility has  The most lacking test in terms of feasibility has
 been looking at benchmarks to analyze the load at which  been looking at benchmarks to analyze the load at which
 the SQL database can efficiently allow many users to  the SQL database can efficiently allow many users to
Line 70  to the point of getting this SQL softwar Line 154  to the point of getting this SQL softwar
 however there may be more optimal approaches than currently  however there may be more optimal approaches than currently
 exist.  exist.
 </P>  </P>
 <H3>Purpose within LON-CAPA</H3>  <H2>Purpose within LON-CAPA</H2>
 <P>  <P>
 LON-CAPA is meant to distribute A LOT of educational content  LON-CAPA is meant to distribute A LOT of educational content
 to A LOT of people.  It is ineffective to directly rely on contents  to A LOT of people.  It is ineffective to directly rely on contents
Line 131  THE SOLUTION: Line 215  THE SOLUTION:
   processes (lonsql's) handle the MySQL database manipulations.    processes (lonsql's) handle the MySQL database manipulations.
 </PRE>  </PRE>
 </P>  </P>
 <H3>Installation</H3>  <H2>Dependencies</H2>
   <P>
   I believe (but am not 100% confident) that the following
   RPMs are necessary (in addition to the current ones
   in rpm_list.txt) to run MySQL.  Basically I discovered these
   dependencies while trying to do external RPM based installs.
   I assume, and sometimes found, that these dependencies apply
   to tarball-based distributions too.  (So to play it on the
   safe side, I am going to include these RPMs as part of the
   core, minimal RPM set.)
   <UL>
   <LI>egcs-1.1.2-30</LI>
   <LI>cpp-1.1.2-30</LI>
   <LI>glibc-devel-2.1.3-15</LI>
   <LI>zlib-devel-1.1.3-6</LI>
   </UL>
   </P>
   <H2>Installation</H2>
 <P>  <P>
 Installation of the LON-CAPA SQL database normally occurs  Installation of the LON-CAPA SQL database normally occurs
 by default when using the LON-CAPA installation CD  by default when using the LON-CAPA installation CD
 (see http://install.lon-capa.org).  It is installed  (see http://install.lon-capa.org).  It is installed
 as the LON-CAPA-mysql RPM.  This RPM encodes for the MySQL  as the LON-CAPA-mysql RPM.  This RPM encodes for the MySQL
 engine and related perl interfaces (Perl::DBI, Perl::Msql-Mysql).  engine.  Related perl interfaces (Perl::DBI, Perl::Msql-Mysql)
   are encoded in the LON-CAPA-systemperl RPM.
 </P>  </P>
 <P>  <P>
 The three components of a MySQL installation for the  The three components of a MySQL installation for the
Line 160  from source or pre-compiled file listing Line 262  from source or pre-compiled file listing
 actual MySQL functionality on the system</TD></TR>  actual MySQL functionality on the system</TD></TR>
 </TABLE>  </TABLE>
 </P>  </P>
 <H3>Installation from source</H3>  <H2>Installation from source</H2>
   <P>
   Note: the mysql site recommends that Linux users install by
   using the MySQL RPMs (MySQL-client, MySQL, MySQL-shared, etc).
   While these RPMs work, I was unsuccessful at integrating
   this RPM-installed database with perl modules from www.cpan.org.
   Hence, I <STRONG>strongly</STRONG> recommend that, when installing
   from "source", MySQL and the perl components be in fact installed
   from their tarballs (.tar.gz, .tgz).  (Perl components, when installed
   from RPMs, also wound up in incorrect locations on the disk.)
   Do not coordinate a source install with externally made RPMs!
   It is, of course, okay to use LON-CAPA RPMs such as LON-CAPA-systemperl
   and LON-CAPA-mysql since we, in fact, made these RPMs correctly :).
   <UL>
   <LI>http://www.cpan.org/authors/id/JWIED/Msql-Mysql-modules-1.2215.tar.gz
   <BR>This tarball Released 20th August 2000
   <LI>http://www.mysql.com/Downloads/MySQL-3.23/mysql-3.23.33-pc-linux-gnu-i686.tar.gz
   <BR>This tarball Last changed 2000-11-11
   <BR>This is actually a binary tarball (as opposed to source code
   that is subsequently compiled).
   <LI>http://www.cpan.org/authors/id/TIMB/DBI-1.14.tar.gz
   <BR>This tarball Released 14th June 2000
   </UL>
   </P>
   <P>So, here is exactly how I installed MySQL-3.23. (Note that all files
   wind up in /usr/local/mysql-3.23.33-pc-linux-gnu-i686 except for
   a link from /usr/local/mysql to /usr/local/mysql-3.23.33-pc-linux-gnu-i686
   and some files involved in system process handling (/etc/rc.d/*/*mysql).
   <PRE>
   (As user=root)
   cd /usr/local/;
   tar xzvf mysql-3.23.33-pc-linux-gnu-i686.tar.gz
   ln -s /usr/local/mysql-3.23.33-pc-linux-gnu-i686 mysql
   cd /usr/local/mysql
   chown -R www /usr/local/mysql/.
   chgrp -R users /usr/local/mysql/.
   chmod -R g-w,g-r,g-x /usr/local/mysql/.
   (probably also want chmod -R a-w,a-r,a-x /usr/local/mysql/.)
   
   Alter <TT>safe_mysqld</TT>
   and <TT>support-files/mysql.server</TT> to use 'localhosts' instead
   of `bin/hostname`.  Also, to use user 'www' instead of 'mysql'.
   
   (These changes could be done with /etc/my.cnf, but
   I think this approach makes sure the database NEVER
   gets screwed up due to somebody forgetting to install /etc/my.cnf).
   
   Change this line in mysql.server from
     pid_file=$datadir/`@HOSTNAME@`.pid
   to
     pid_file=$datadir/localhost.pid
   
   Change this line in safe_mysqld from
   user=root
   to
   user=www
   
   Change this line in safe_mysqld from
     pid_file=$DATADIR/`/bin/hostname`.pid
   to
     pid_file=$DATADIR/localhost.pid
   
   Change this line in safe_mysqld from
   test -z "$err_log"  && err_log=$DATADIR/`/bin/hostname`.err
   to
   test -z "$err_log"  && err_log=$DATADIR/localhost.err
   
   cp -p support-files/mysql.server /etc/rc.d/init.d/mysql
   chmod 755 /etc/rc.d/init.d/mysql
   /sbin/chkconfig --add mysql
   /etc/rc.d/init.d/mysql start
   
   </PRE>
   </P>
   <P>This is how I installed the Msql-Mysql-modules perl modules.
   <PRE>
   [root@fenchurch Msql-Mysql-modules-1.2215]# perl Makefile.PL 
   Which drivers do you want to install?
   
       1) MySQL only
       2) mSQL only (either of mSQL 1 or mSQL 2)
       3)  MySQL and mSQL (either of mSQL 1 or mSQL 2)
   
       4)  mSQL 1 and mSQL 2
       5)  MySQL, mSQL 1 and mSQL 2
   
   Enter the appropriate number:  [3] 1
   
   
   Do you want to install the MysqlPerl emulation? You might keep your old
   Mysql module (to be distinguished from DBD::mysql!) if you are concerned
   about compatibility to existing applications! [y] n
   Where is your MySQL installed? Please tell me the directory that
   contains the subdir 'include'. [/usr/local/mysql] 
   Which database should I use for testing the MySQL drivers? [test] 
   On which host is database test running (hostname, ip address
   or host:port) [localhost] 
   User name for connecting to database test? [undef]
   Password for connecting to database test? [undef]
   [root@fenchurch Msql-Mysql-modules-1.2215]# make
   [root@fenchurch Msql-Mysql-modules-1.2215]# make test
   make[1]: Entering directory `/home/user/Msql-Mysql-modules-1.2215/mysql'
   make[1]: Leaving directory `/home/user/Msql-Mysql-modules-1.2215/mysql'
   make[1]: Entering directory `/home/user/Msql-Mysql-modules-1.2215/mysql'
   PERL_DL_NONLAZY=1 /usr/bin/perl -I../blib/arch -I../blib/lib -I/usr/lib/perl5/5.00503/i386-linux -I/usr/lib/perl5/5.00503 -e 'use Test::Harness qw(&runtests $verbose); $verbose=0; runtests @ARGV;' t/*.t
   t/00base............ok
   t/10dsnlist.........ok
   t/20createdrop......ok
   t/30insertfetch.....ok
   t/40bindparam.......ok
   t/40blobs...........ok
   t/40listfields......ok
   t/40nulls...........ok
   t/40numrows.........ok
   t/50chopblanks......ok
   t/50commit..........ok
   t/60leaks...........skipping test on this platform
   t/ak-dbd............ok
   t/akmisc............ok
   t/dbdadmin..........ok
   t/mysql.............ok
   t/mysql2............ok
   All tests successful, 1 test skipped.
   Files=17,  Tests=732, 40 wallclock secs (15.38 cusr +  1.30 csys = 16.68 CPU)
   [root@fenchurch Msql-Mysql-modules-1.2215]# make install
   
   These files are installed.
   /usr/bin/dbimon
   /usr/lib/perl5/man/man3/Bundle::DBD::mysql.3
   /usr/lib/perl5/man/man3/DBD::mysql.3
   /usr/lib/perl5/man/man3/Mysql.3
   /usr/lib/perl5/site_perl/5.005/i386-linux/Bundle/DBD/mysql.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBD/mysql.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/Mysql.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/Mysql/Statement.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/auto/DBD/mysql/mysql.bs
   /usr/lib/perl5/site_perl/5.005/i386-linux/auto/DBD/mysql/mysql.so
   /usr/man/man1/dbimon.1
   /usr/lib/perl5/site_perl/5.005/i386-linux/auto/Msql-Mysql-modules/.packlist
   </PRE>
   </P>
   <P>
   This is how I installed the DBI perl modules.
   <PRE>$dbh
   [root@fenchurch DBI-1.14]# perl Makefile.PL
   *** Note:
       The optional PlRPC-modules (RPC::PlServer etc) are not installed.
       If you want to use the DBD::Proxy driver and DBI::ProxyServer
       modules, then you'll need to install the RPC::PlServer, RPC::PlClient,
       Storable and Net::Daemon modules. The CPAN Bundle::DBI may help you.
       You can install them any time after installing the DBI.
       You do *not* need these modules for typical DBI usage.
   
   Optional modules are available from any CPAN mirror, in particular
       http://www.perl.com/CPAN/modules/by-module
       http://www.perl.org/CPAN/modules/by-module
       ftp://ftp.funet.fi/pub/languages/perl/CPAN/modules/by-module
   
   Checking if your kit is complete...
   Looks good
   Writing Makefile for DBI
   
       Remember to actually *read* the README file!
       Use  'make' to build the software (dmake or nmake on Windows).
       Then 'make test' to execute self tests.
       Then 'make install' to install the DBI and then delete this working
       directory before unpacking and building any DBD::* drivers.
   
   [root@fenchurch DBI-1.14]# make
   [root@fenchurch DBI-1.14]# make test
   PERL_DL_NONLAZY=1 /usr/bin/perl -Iblib/arch -Iblib/lib -I/usr/lib/perl5/5.00503/i386-linux -I/usr/lib/perl5/5.00503 -e 'use Test::Harness qw(&runtests $verbose); $verbose=0; runtests @ARGV;' t/*.t
   t/basics............ok
   t/dbidrv............ok
   t/examp.............ok
   t/meta..............ok
   t/proxy.............skipping test on this platform
   t/shell.............ok
   t/subclass..........ok
   All tests successful, 1 test skipped.
   Files=7,  Tests=179,  7 wallclock secs ( 6.46 cusr +  0.49 csys =  6.95 CPU)
   PERL_DL_NONLAZY=1 /usr/bin/perl -Iblib/arch -Iblib/lib -I/usr/lib/perl5/5.00503/i386-linux -I/usr/lib/perl5/5.00503 test.pl
   test.pl 
   DBI test application $Revision$
   Using /home/user/DBI-1.14/blib
   Switch: DBI 1.14 by Tim Bunce, 1.14
   Available Drivers: ADO, ExampleP, Multiplex, Proxy, mysql
   dbi:ExampleP:: testing 5 sets of 20 connections:
   Connecting... 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 
   Disconnecting...
   Connecting... 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 
   Disconnecting...
   Connecting... 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 
   Disconnecting...
   Connecting... 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 
   Disconnecting...
   Connecting... 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 
   Disconnecting...
   Made 100 connections in  0 wallclock secs ( 0.22 usr +  0.03 sys =  0.25 CPU)
   
   Testing handle creation speed...
   5000 NullP statement handles cycled in 6.6 cpu+sys seconds (762 per sec)
   
   test.pl done
   
   [root@fenchurch DBI-1.14]# make install
   These files are installed.
   /usr/lib/perl5/site_perl/5.005/i386-linux/auto/DBI/.packlist
   /usr/bin/dbiproxy
   /usr/bin/dbish
   /usr/lib/perl5/man/man3/Bundle::DBI.3
   /usr/lib/perl5/man/man3/DBD::ADO.3
   /usr/lib/perl5/man/man3/DBD::Multiplex.3
   /usr/lib/perl5/man/man3/DBD::Proxy.3
   /usr/lib/perl5/man/man3/DBI.3
   /usr/lib/perl5/man/man3/DBI::DBD.3
   /usr/lib/perl5/man/man3/DBI::FAQ.3
   /usr/lib/perl5/man/man3/DBI::Format.3
   /usr/lib/perl5/man/man3/DBI::ProxyServer.3
   /usr/lib/perl5/man/man3/DBI::Shell.3
   /usr/lib/perl5/man/man3/DBI::W32ODBC.3
   /usr/lib/perl5/man/man3/Win32::DBIODBC.3
   /usr/lib/perl5/site_perl/5.005/i386-linux/Bundle/DBI.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBD/ADO.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBD/ExampleP.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBD/Multiplex.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBD/NullP.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBD/Proxy.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBD/Sponge.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBI.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBI/DBD.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBI/FAQ.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBI/Format.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBI/ProxyServer.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBI/Shell.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/DBI/W32ODBC.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/Win32/DBIODBC.pm
   /usr/lib/perl5/site_perl/5.005/i386-linux/auto/DBI/DBI.bs
   /usr/lib/perl5/site_perl/5.005/i386-linux/auto/DBI/DBI.so
   /usr/lib/perl5/site_perl/5.005/i386-linux/auto/DBI/DBIXS.h
   /usr/lib/perl5/site_perl/5.005/i386-linux/auto/DBI/Driver.xst
   /usr/lib/perl5/site_perl/5.005/i386-linux/auto/DBI/dbd_xsh.h
   /usr/lib/perl5/site_perl/5.005/i386-linux/auto/DBI/dbi_sql.h
   /usr/lib/perl5/site_perl/5.005/i386-linux/auto/DBI/dbipport.h
   /usr/man/man1/dbiproxy.1
   /usr/man/man1/dbish.1
   </PRE>
   </P>
   <FONT COLOR="green"> old notes in green
 <P>  <P>
 The following set of tarballs was found to work together  The following set of tarballs was found to work together
 properly on a LON-CAPA RedHat 6.2 system:  properly on a LON-CAPA RedHat 6.2 system:
Line 174  properly on a LON-CAPA RedHat 6.2 system Line 523  properly on a LON-CAPA RedHat 6.2 system
 Installation was simply a matter of following the instructions  Installation was simply a matter of following the instructions
 and typing the several "make" commands for each   and typing the several "make" commands for each 
 </P>  </P>
 <H3>Configuration (automated)</H3>  </FONT>
   <H2>Configuration (automated)</H2>
 <P>  <P>
 Not yet developed.  This will be part of an interface  Not yet stabilized.  We are looking at webmin
 present on LON-CAPA systems that can be launched by  and/or a text-UI tool with less software dependencies
 entering the command <TT>/usr/sbin/loncapaconfig</TT>.  than the python-anaconda hunk represented by
   the prior loncapaconfig.
 </P>  </P>
 <H3>Manual configuration</H3>  <H2>Manual configuration</H2>
 <P>  <P>
 This is not complete.  This is not complete.
 </P>  </P>
Line 206  VALUES ('localhost','www',password('newm Line 557  VALUES ('localhost','www',password('newm
 <P>  <P>
 <STRONG>Granting privileges to user 'www'</STRONG>:  <STRONG>Granting privileges to user 'www'</STRONG>:
 <PRE>  <PRE>
 GRANT ALL PRIVILEGES ON *.* TO www@localhost;  GRANT ALL PRIVILEGES ON loncapa.* TO 'www@localhost';
 FLUSH PRIVILEGES;  FLUSH PRIVILEGES;
 </PRE>  </PRE>
 </P>  </P>
Line 215  FLUSH PRIVILEGES; Line 566  FLUSH PRIVILEGES;
 Copy support-files/mysql.server to the right place on the system  Copy support-files/mysql.server to the right place on the system
 (/etc/rc.d/...).  (/etc/rc.d/...).
 </P>  </P>
 <H3>Testing</H3>  
 <P>  
 Not yet documented or formalized.  
 </P>  
 <H3>Example sections of code relevant to LON-CAPA</H3>  
 <P>  
 </P>  
   
 <H1>Old notes</H1>  
   
 <H3>How to add a user to the SQL database</H3>  
 <P>  <P>
   <STRONG>The Perl API</STRONG>
 <PRE>  <PRE>
 start the mysql daemon as /usr/local/bin/safe_mysqld &  
 Login as root: mysql -u root -p mysql  
 enter the password as newmysql  
 add the user www: grant all priveleges on *.* to www@localhost identified by 'newmysql' with grant option;  
   
 INSERT INTO user (Host, User, Password)  
 VALUES ('localhost','www',password('newmysql'));  
   
 GRANT ALL PRIVILEGES ON *.* TO www@localhost;  
   
 FLUSH PRIVILEGES;  
   
 Here the user www has the right to grant privileges to other users.  
 This can be changed if required with a simple update command on the grant tables  
   
   
 /home/httpd/perl/perlsql/lonsql  
 /usr/local/mysql/fakeclient  
 </PRE>  
 </P>  
 <H3>To do</H3>  
 <P>  
 <PRE>  
 This is the output from scripts/mysql_install_db...  
 still some todo things (like support-files/mysql.server)  
   
 Creating db table  
 Creating host table  
 Creating user table  
 Creating func table  
 Creating tables_priv table  
 Creating columns_priv table  
   
 To start mysqld at boot time you have to copy support-files/mysql.server  
 to the right place for your system  
   
 PLEASE REMEMBER TO SET A PASSWORD FOR THE MySQL root USER !  
 This is done with:  
 /usr/local/bin/mysqladmin -u root password 'new-password'  
 See the manual for more instructions.  
   
 Please report any problems with the /usr/local/bin/mysqlbug script!  
   
 The latest information about MySQL is available on the web at http://www.mysql.com  
 Support MySQL by buying support/licenses at http://www.tcx.se/license.htmy.  
 </PRE>  
 </P>  
 <H3>Source Installation and Manual Configuration</H3>  
 <P>  
 <PRE>  
 August, 29 2000; Scott Harrison; LON-CAPA  
   
 These are notes related to a Perl interface and MySQL server installation  
 on Redhat 6.1 and 6.2 boxes.  (Guy Albertelli and Harsha Jagasia  
 contributed significantly to this.)  
   
 ********************  
 * MySQL COMPONENTS *  
 ********************  
   
 There are three components to an effective MySQL installation for the  
 LON-CAPA system.  
   
 Perl::DBI module- the API "front-end"...  
                   database interface module for organizing generic  
                   database commands which are independent of specific  
                   database implementation (such as MySQL, mSQL, Postgres, etc).  
   
 Perl::MySQL module- the API "mid-section"...  
                     the module to directly interface with the actual  
                     MySQL database engine  
   
 MySQL database engine- the "back-end"...  
                        the binary installation (compiled either from source  
                        or pre-compiled file listings) which provides the  
                        actual MySQL functionality on the system  
   
 RedHat Installation-  
   
 Initially done from source:  
 DBI-1.13.tar.gz  Msql-Mysql-modules-1.2209.tar.gz  mysql-3.22.32.tar.gz  
   
 I am now using pre-compiled file listings.  
   
 There were problems with using the RedHat packages since the three  
 different RedHat packages were somewhat noncompatible with each other  
 in terms of expected file locations. (The Debian linux distribution,  
 on the other hand, has a working set of these packages).  
   
 Regardless of how we install these three components, there still remain  
 certain things which need to happen for the configuration.  
   
 *****************  
 * CONFIGURATION *  
 *****************  
   
 (Note: SOMEPASSWORD is actually set to another text string on the current  
 LON-CAPA systems.)  
   
 Configuration is needed to generate the necessary functionality for the  
 MySQL system with LON-CAPA.  
   
 The functionality needed can be understood from this example line  
 of perl code from "lonsql".  
   
    $dbh = DBI->connect( "DBI:mysql:loncapa",     $dbh = DBI->connect( "DBI:mysql:loncapa",
  "www",   "www",
  "SOMEPASSWORD",   "SOMEPASSWORD",
Line 382  As user www, run this command Line 618  As user www, run this command
 enter the password as SOMEPASSWORD  enter the password as SOMEPASSWORD
   
 To add the user www to the MySQL server, and grant all  To add the user www to the MySQL server, and grant all
 privileges on *.* to www@localhost identified by 'SOMEPASSWORD'  privileges on loncapa.* to www@localhost identified by 'SOMEPASSWORD'
 with grant option;  with grant option;
   
 INSERT INTO user (Host, User, Password)  INSERT INTO user (Host, User, Password)
 VALUES ('localhost','www',password('SOMEPASSWORD'));  VALUES ('localhost','www',password('SOMEPASSWORD'));
   
 GRANT ALL PRIVILEGES ON *.* TO www@localhost;  GRANT ALL PRIVILEGES ON loncapa.* TO 'www@localhost';
   
 FLUSH PRIVILEGES;  FLUSH PRIVILEGES;
   
 ** ABILITY for LON-CAPA machines to communicate with SQL databases on  ** ABILITY for LON-CAPA machines to communicate with SQL databases on
    other LON-CAPA machines     other LON-CAPA machines
   
 This is a little more intricate than might first be expected (and I probably  An up-to-date lond and lonsql.
 won't do a perfect job reciting everything in this short synopsis).  Because  </PRE>
 LON-CAPA machines will likely be handling many SQL requests at a time,  </P>
 there were some problems with current MySQL capabilities.  <H2>Testing</H2>
   <P>
 PROBLEM SITUATION:  To test the backend MySQL database, a number of commands should be
   run after installation.
   If Server A wants data from Server B, Server A uses a lonc process to  <UL>
   send a database command to a Server B lond process.  <LI><TT>cd /usr/local/mysql/sql-bench; ./run-all-tests --small-test</TT></LI>
     lonc= loncapa client process    A-lonc= a lonc process on Server A  <BR>without the --small-test flag, this test can take more than 10 hours!
     lond= loncapa daemon process  <LI><TT>cd /usr/local/mysql; bin/mysqladmin version</TT></LI>
   <LI><TT>cd /usr/local/mysql; bin/mysqladmin variables</TT></LI>
                  database command  <LI><TT>cd /usr/local/mysql; bin/mysqlshow</TT></LI>
     A-lonc  --------TCP/IP----------------> B-lond  <LI><TT>cd /usr/local/mysql; bin/mysqlshow mysql</TT></LI>
   <LI><TT>cd /usr/local/mysql; bin/mysql -e "select host,db,user from db" mysql</TT></LI>
   The problem emerges that A-lonc and B-lond are kept waiting for the  <LI><TT>cd /usr/local/mysql/mysql-test; ./test-run-all</TT></LI>
   MySQL server to "do its stuff", or in other words, perform the conceivably  
   sophisticated, data-intensive, time-sucking database transaction.  By tying  
   up a lonc and lond process, this significantly cripples the capabilities  
   of LON-CAPA servers.   
   
   While commercial databases have a variety of features that ATTEMPT to  
   deal with this, freeware databases are still experimenting and exploring  
   with different schemes with varying degrees of performance stability.  
   
 THE SOLUTION:  
   
   A separate daemon process was created that B-lond works with to  
   handle database requests.  This daemon process is called "lonsql".  
   
   So,  
                 database command  
   A-lonc  ---------TCP/IP-----------------> B-lond =====> B-lonsql  
          <---------------------------------/                |  
            "ok, I'll get back to you..."                    |  
                                                             |  
                                                             /  
   A-lond  <-------------------------------  B-lonc   <======  
            "Guess what? I have the result!"  
   
   Of course, depending on success or failure, the messages may vary,  </UL>
   but the principle remains the same where a separate pool of children  <P>
   processes (lonsql's) handle the MySQL database manipulations.  These are sections of perl code which helps test the LON-CAPA network.
   <PRE>
   <STRONG>** TEST the database connection with my current tester.pl code
   which mimics what command will eventually be sent through lonc.</STRONG>
   
   $reply=reply(
       "querysend:SELECT * FROM general_information WHERE Id='AAAAA'",$lonID);
   </PRE>
   </P>
   <H2>Example sections of code relevant to LON-CAPA</H2>
   <P>
 Here are excerpts of code which implement the above handling:  Here are excerpts of code which implement the above handling:
   </P>
 **LONSQL  <P>
   <PRE>
   <STRONG>**LONSQL
 A subroutine from "lonsql" which establishes a child process for handling  A subroutine from "lonsql" which establishes a child process for handling
 database interactions.  database interactions.</STRONG>
   
 sub make_new_child {  sub make_new_child {
     my $pid;      my $pid;
Line 536  sub make_new_child { Line 759  sub make_new_child {
         exit;          exit;
     }      }
 }  }
   </P>
 ** LOND enabling of MySQL requestsw  <P>
   <STRONG>** LOND enabling of MySQL requests</STRONG>
   This code is part of every lond child process in the way that it parses command request syntax  <BR />
   sent to it from lonc processes.  querysend corresponds to B-lonc sending the result of the query.  This code is part of every lond child process in the
   queryreply corresponds to B-lond indicating that it has received the request and will start the  way that it parses command request syntax sent to it
   database transaction (it returns "ok" to A-lonc ($client)).  from lonc processes.  Based on the diagram above, querysend
   corresponds to B-lonc sending the result of the query.
   queryreply corresponds to B-lond indicating that it has
   received the request and will start the database transaction
   (it returns "ok" to
   A-lonc ($client)).
   <PRE>
 # ------------------------------------------------------------------- querysend  # ------------------------------------------------------------------- querysend
                    } elsif ($userinput =~ /^querysend/) {                     } elsif ($userinput =~ /^querysend/) {
                        my ($cmd,$query)=split(/:/,$userinput);                         my ($cmd,$query)=split(/:/,$userinput);
Line 563  sub make_new_child { Line 791  sub make_new_child {
    print $client "error:$!\n";     print $client "error:$!\n";
        }         }
   
   
   
 ** TEST the database connection with my current tester.pl code which mimics what command will eventually be  
    sent through lonc.  
   
 $reply=reply(  
     "querysend:SELECT * FROM general_information WHERE Id='AAAAA'",$lonID);  
 </PRE>  </PRE>
   
 </P>  </P>
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