version 1.22, 2003/10/21 20:58:29
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version 1.47, 2005/02/18 05:37:42
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Line 32 use Apache::lonxml;
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Line 32 use Apache::lonxml;
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use Apache::lonnet; |
use Apache::lonnet; |
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BEGIN { |
BEGIN { |
&Apache::lonxml::register('Apache::chemresponse',('organicresponse','organicstructure','reactionresponse')); |
&Apache::lonxml::register('Apache::chemresponse',('organicresponse','organicstructure','reactionresponse','chem')); |
} |
} |
|
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sub seperate_jme_window { |
sub chem_standard_order { |
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my ($reaction) = @_; |
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my ($re,$pr) = split(/->|<=>/,$reaction); |
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my @reactants = split(/\s\+/,$re); |
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my @products = split(/\s\+/,$pr); |
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foreach my $substance (@reactants,@products) { |
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$substance =~ s/(\^\d*)\s+/$1_/g; # protect superscript space |
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$substance =~ s/\s*//g; # strip whitespace |
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$substance =~ s/_/ /g; # restore superscript space |
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} |
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@reactants = sort @reactants; |
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@products = sort @products; |
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my $standard = ''; |
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foreach my $substance (@reactants) { |
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$standard .= $substance; |
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$standard .= ' + '; |
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} |
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$standard =~ s/ \+ $//; # get rid of trailing plus sign |
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$standard .= ' -> '; |
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foreach my $substance (@products) { |
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$standard .= $substance; |
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$standard .= ' + '; |
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} |
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$standard =~ s/ \+ $//; # get rid of trailing plus sign |
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return $standard; |
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} |
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|
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sub separate_jme_window { |
my ($smile_input,$jme_input,$molecule,$options)=@_; |
my ($smile_input,$jme_input,$molecule,$options)=@_; |
my $smilesection; |
my $smilesection; |
if (defined($smile_input)) { |
if (defined($smile_input)) { |
Line 57 JMESECTION
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Line 84 JMESECTION
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<html> |
<html> |
<head> |
<head> |
<title>Molecule Editor</title> |
<title>Molecule Editor</title> |
<script language="JavaScript"> |
<script type="text/javascript"> |
|
// <!-- |
function submitSmiles() { |
function submitSmiles() { |
jmeFile = document.applets.JME.jmeFile(); |
jmeFile = document.applets.JME.jmeFile(); |
if (jmeFile == "") { |
if (jmeFile == "") { |
Line 71 function submitSmiles() {
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Line 99 function submitSmiles() {
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function openHelpWindow() { |
function openHelpWindow() { |
window.open("/adm/jme/jme_help.html","","scrollbars=yes,resizable=yes,width=500,height=600"); |
window.open("/adm/jme/jme_help.html","","scrollbars=yes,resizable=yes,width=500,height=600"); |
} |
} |
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// --> |
</script> |
</script> |
</head> |
</head> |
<body bgcolor="#ffffff"> |
<body bgcolor="#ffffff"> |
<center> |
<center> |
<applet code="JME.class" name="JME" archive="/adm/jme/JME.jar" width="97%" height="78%"> |
<applet code="JME.class" name="JME" archive="/adm/jme/JME.jar" width="440" height="390"> |
You have to enable Java and JavaScript on your machine. |
You have to enable Java and JavaScript on your machine. |
$molecule |
$molecule |
<param name="options" value="$options" /> |
<param name="options" value="$options" /> |
</applet><br /> |
</applet><br /> |
<font face="arial,helvetica,sans-serif" size=-1><a href="http://www.molinspiration.com/jme/index.html">JME Editor</a> courtesy of Peter Ertl, Novartis</font> |
<font face="arial,helvetica,sans-serif" size=-1><a href="http://www.molinspiration.com/jme/index.html">JME Editor</a> courtesy of Peter Ertl, Novartis</font> |
<form> |
<form> |
<input type="button" name="submit" value="Insert Answer" onClick = "submitSmiles();" /> |
<input type="button" name="submit" value="Insert Answer" onclick = "submitSmiles();" /> |
<br /> |
<br /> |
<input type="button" value=" Close " onClick = "window.close()" /> |
<input type="button" value=" Close " onclick = "window.close()" /> |
|
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<input type="button" value=" Help " onClick = "openHelpWindow()" /> |
<input type="button" value=" Help " onclick = "openHelpWindow()" /> |
</form> |
</form> |
</center> |
</center> |
</body> |
</body> |
</html> |
</html> |
CHEMPAGE |
CHEMPAGE |
$body=&HTML::Entities::encode($body); |
$body=&HTML::Entities::encode($body,'<>&"'); |
$body=~s/\n/ /g; |
$body=~s/\n/ /g; |
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my $docopen=&Apache::lonhtmlcommon::javascript_docopen(); |
my $result=<<CHEMINPUT; |
my $result=<<CHEMINPUT; |
<input type="button" value="Draw Molecule" onClick="javascript:editor=window.open('','','width=500,height=500,scrollbars=no,resizable=yes');editor.document.open('text/html','replace');editor.document.writeln('$body')" /> |
<input type="button" value="Draw Molecule" onclick="javascript:editor=window.open('','','width=500,height=500,scrollbars=no,resizable=yes');editor.$docopen;editor.document.writeln('$body')" /> |
CHEMINPUT |
CHEMINPUT |
return $result; |
return $result; |
} |
} |
Line 106 sub start_organicresponse {
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Line 136 sub start_organicresponse {
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my $partid = $Apache::inputtags::part; |
my $partid = $Apache::inputtags::part; |
my $id = &Apache::response::start_response($parstack,$safeeval); |
my $id = &Apache::response::start_response($parstack,$safeeval); |
if ($target eq 'meta') { |
if ($target eq 'meta') { |
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$result=&Apache::response::meta_package_write('organicresponse'); |
} elsif ($target eq 'web') { |
} elsif ($target eq 'web') { |
my $molecule; |
if ( &Apache::response::show_answer() ) { |
if (defined($Apache::lonhomework::history{"resource.$partid.$id.molecule"})) { |
my $jmeanswer=&Apache::lonxml::get_param('jmeanswer',$parstack, |
$molecule=$Apache::lonhomework::history{"resource.$partid.$id.molecule"}; |
$safeeval); |
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my $options=&Apache::lonxml::get_param('options',$parstack, |
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$safeeval); |
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my $width=&Apache::lonxml::get_param('width',$parstack, |
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$safeeval); |
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my $id=&Apache::loncommon::get_cgi_id(); |
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$result="<img src='/cgi-bin/convertjme.pl?$id'"; |
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if ($options =~ /border/) { $result.= ' border="1"'; } |
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$result.=' />'; |
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&Apache::lonnet::appenv('cgi.'.$id.'.JME' => |
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&Apache::lonnet::escape($jmeanswer), |
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'cgi.'.$id.'.PNG' => 1, |
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'cgi.'.$id.'.WIDTH' => $width); |
} else { |
} else { |
$molecule=&Apache::lonxml::get_param('molecule',$parstack, |
my $molecule; |
$safeeval); |
if (defined($Apache::lonhomework::history{"resource.$partid.$id.molecule"})) { |
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$molecule=$Apache::lonhomework::history{"resource.$partid.$id.molecule"}; |
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} else { |
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$molecule=&Apache::lonxml::get_param('molecule',$parstack, |
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$safeeval); |
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} |
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my $options=&Apache::lonxml::get_param('options',$parstack, |
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$safeeval); |
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$result=&separate_jme_window("HWVAL_$id","MOLECULE_$id",$molecule,$options); |
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$result.= '<input type="hidden" name="MOLECULE_'.$id.'" value="" />'; |
} |
} |
my $options=&Apache::lonxml::get_param('options',$parstack, |
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$safeeval); |
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$result=&seperate_jme_window("HWVAL_$id","MOLECULE_$id",$molecule,$options); |
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$result.= '<input type="hidden" name="MOLECULE_'.$id.'" value="" />'; |
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} elsif ($target eq 'edit') { |
} elsif ($target eq 'edit') { |
$result .=&Apache::edit::tag_start($target,$token); |
$result .=&Apache::edit::tag_start($target,$token); |
my $options=&Apache::lonxml::get_param('options',$parstack, |
my $options=&Apache::lonxml::get_param('options',$parstack, |
Line 128 sub start_organicresponse {
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Line 176 sub start_organicresponse {
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$token,40); |
$token,40); |
my $molecule=&Apache::lonxml::get_param('molecule',$parstack, |
my $molecule=&Apache::lonxml::get_param('molecule',$parstack, |
$safeeval); |
$safeeval); |
$result .=&seperate_jme_window(undef, |
$result .=&separate_jme_window(undef, |
&Apache::edit::html_element_name('molecule'), |
&Apache::edit::html_element_name('molecule'), |
$molecule,$options); |
$molecule,$options); |
$result .='</nobr><br /><nobr>'; |
$result .='</nobr><br /><nobr>'; |
Line 137 sub start_organicresponse {
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Line 185 sub start_organicresponse {
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$result .=&Apache::edit::hidden_arg('jmeanswer',$token); |
$result .=&Apache::edit::hidden_arg('jmeanswer',$token); |
my $jmeanswer=&Apache::lonxml::get_param('jmeanswer',$parstack, |
my $jmeanswer=&Apache::lonxml::get_param('jmeanswer',$parstack, |
$safeeval); |
$safeeval); |
$result .=&seperate_jme_window( |
$result .=&separate_jme_window( |
&Apache::edit::html_element_name('answer'), |
&Apache::edit::html_element_name('answer'), |
&Apache::edit::html_element_name('jmeanswer'), |
&Apache::edit::html_element_name('jmeanswer'), |
$jmeanswer,$options); |
$jmeanswer,$options); |
$result .='</nobr><br />'; |
$result .='</nobr><br />'; |
$result .=&Apache::edit::checked_arg('Options:','options', |
$result .=&Apache::edit::checked_arg('Options:','options', |
[ ['autoez','Auto E,Z sterochemistry'], |
[ ['autoez','Auto E,Z stereochemistry'], |
['multipart','Multipart Structures'], |
['multipart','Multipart Structures'], |
['nostereo','No stereochemistry'], |
['nostereo','No stereochemistry'], |
['reaction','Is a reaction'], |
['reaction','Is a reaction'], |
['number','Able to number atoms'] ], |
['number','Able to number atoms'] ], |
,$token); |
,$token); |
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$result .=&Apache::edit::text_arg('Width of correct answer image:', |
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'width',$token,10); |
$result .=&Apache::edit::end_row().&Apache::edit::start_spanning_row(); |
$result .=&Apache::edit::end_row().&Apache::edit::start_spanning_row(); |
} elsif ($target eq 'modified') { |
} elsif ($target eq 'modified') { |
my $constructtag=&Apache::edit::get_new_args($token,$parstack, |
my $constructtag=&Apache::edit::get_new_args($token,$parstack, |
$safeeval,'molecule', |
$safeeval,'molecule', |
'answer','jmeanswer', |
'answer','jmeanswer', |
'options'); |
'options','width'); |
if ($constructtag) { $result = &Apache::edit::rebuild_tag($token); } |
if ($constructtag) { $result = &Apache::edit::rebuild_tag($token); } |
} |
} |
return $result; |
return $result; |
Line 163 sub start_organicresponse {
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Line 213 sub start_organicresponse {
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sub end_organicresponse { |
sub end_organicresponse { |
my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_; |
my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_; |
my $result; |
my $result; |
if ($target eq 'grade' && defined($ENV{'form.submitted'})) { |
if ($target eq 'grade' && &Apache::response::submitted()) { |
&Apache::response::setup_params($$tagstack[-1]); |
&Apache::response::setup_params($$tagstack[-1],$safeeval); |
my $response = &Apache::response::getresponse(); |
my $response = &Apache::response::getresponse(); |
if ( $response =~ /[^\s]/) { |
if ( $response =~ /[^\s]/) { |
my $partid = $Apache::inputtags::part; |
my $partid = $Apache::inputtags::part; |
Line 182 sub end_organicresponse {
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Line 232 sub end_organicresponse {
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$ad='INCORRECT'; |
$ad='INCORRECT'; |
} |
} |
} |
} |
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if ($ad && $Apache::lonhomework::type eq 'survey') { |
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$ad='SUBMITTED'; |
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} |
&Apache::response::handle_previous(\%previous,$ad); |
&Apache::response::handle_previous(\%previous,$ad); |
$Apache::lonhomework::results{"resource.$partid.$id.awarddetail"}=$ad; |
$Apache::lonhomework::results{"resource.$partid.$id.awarddetail"}=$ad; |
$Apache::lonhomework::results{"resource.$partid.$id.molecule"}=$ENV{"form.MOLECULE_$id"}; |
$Apache::lonhomework::results{"resource.$partid.$id.molecule"}=$ENV{"form.MOLECULE_$id"}; |
Line 208 sub start_organicstructure {
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Line 261 sub start_organicstructure {
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my $width=&Apache::lonxml::get_param('width',$parstack,$safeeval); |
my $width=&Apache::lonxml::get_param('width',$parstack,$safeeval); |
my $molecule=&Apache::lonxml::get_param('molecule',$parstack,$safeeval); |
my $molecule=&Apache::lonxml::get_param('molecule',$parstack,$safeeval); |
my $options=&Apache::lonxml::get_param('options',$parstack,$safeeval); |
my $options=&Apache::lonxml::get_param('options',$parstack,$safeeval); |
my $id=time.'_'.int(rand(1000)); |
my $id=&Apache::loncommon::get_cgi_id(); |
$result="<img src='/cgi-bin/convertjme.pl?$id'"; |
$result="<img src='/cgi-bin/convertjme.pl?$id'"; |
if ($options =~ /border/) { $result.= ' border="1"'; } |
if ($options =~ /border/) { $result.= ' border="1"'; } |
$result.=' />'; |
$result.=' />'; |
Line 217 sub start_organicstructure {
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Line 270 sub start_organicstructure {
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'cgi.'.$id.'.PNG' => 1, |
'cgi.'.$id.'.PNG' => 1, |
'cgi.'.$id.'.WIDTH' => $width ); |
'cgi.'.$id.'.WIDTH' => $width ); |
} elsif ($target eq 'tex') { |
} elsif ($target eq 'tex') { |
my $texwidth=&Apache::lonxml::get_param('texwidth',$parstack,$safeeval,1); |
my $texwidth=&Apache::lonxml::get_param('texwidth',$parstack,$safeeval,undef,1); |
if (!$texwidth) { $texwidth='90'; } |
if (!$texwidth) { $texwidth='90'; } |
my $molecule=&Apache::lonxml::get_param('molecule',$parstack,$safeeval); |
my $molecule=&Apache::lonxml::get_param('molecule',$parstack,$safeeval); |
my $options=&Apache::lonxml::get_param('options',$parstack,$safeeval); |
my $options=&Apache::lonxml::get_param('options',$parstack,$safeeval); |
Line 247 sub start_organicstructure {
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Line 300 sub start_organicstructure {
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$options.= ',multipart,number'; |
$options.= ',multipart,number'; |
} |
} |
|
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$result .=&seperate_jme_window(undef, |
$result .=&separate_jme_window(undef, |
&Apache::edit::html_element_name('molecule'), |
&Apache::edit::html_element_name('molecule'), |
$molecule,$options); |
$molecule,$options); |
$result.="</nobr><br />"; |
$result.="</nobr><br />"; |
Line 255 sub start_organicstructure {
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Line 308 sub start_organicstructure {
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[ ['reaction','Is a reaction'], |
[ ['reaction','Is a reaction'], |
['border','Draw a border'] ], |
['border','Draw a border'] ], |
$token); |
$token); |
$result .=&Apache::edit::end_row().&Apache::edit::start_spanning_row(); |
$result .=&Apache::edit::end_row(); |
} elsif ($target eq 'modified') { |
} elsif ($target eq 'modified') { |
my $constructtag=&Apache::edit::get_new_args($token,$parstack, |
my $constructtag=&Apache::edit::get_new_args($token,$parstack, |
$safeeval,'molecule', |
$safeeval,'molecule', |
Line 280 sub edit_reaction_button {
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Line 333 sub edit_reaction_button {
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my $id_es=&Apache::lonnet::escape($id); |
my $id_es=&Apache::lonnet::escape($id); |
my $field_es=&Apache::lonnet::escape($field); |
my $field_es=&Apache::lonnet::escape($field); |
my $reaction_es=&Apache::lonnet::escape($reaction); |
my $reaction_es=&Apache::lonnet::escape($reaction); |
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my $docopen=&Apache::lonhtmlcommon::javascript_docopen(); |
my $result=<<EDITREACTION; |
my $result=<<EDITREACTION; |
<script type="text/javascript"> |
<script type="text/javascript"> |
|
// <!-- |
function create_reaction_window_${id}_${field} () { |
function create_reaction_window_${id}_${field} () { |
editor=window.open('','','width=500,height=270,scrollbars=no,resizable=yes'); |
editor=window.open('','','width=500,height=270,scrollbars=no,resizable=yes'); |
editor.document.open('text/html','replace'); |
editor.$docopen; |
editor.document.writeln('<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML//EN"><html> <head><title>LON-CAPA Reaction Editor</title></head><frameset rows="30%,*" border="0"> <frame src="/res/adm/pages/reactionresponse/reaction_viewer.html" name="viewer" scrolling="no" /> <frame src="/res/adm/pages/reactionresponse/reaction_editor.html?reaction=$reaction_es&id=$id_es&field=$field_es" name="editor" scrolling="no" /> </frameset> </html>'); |
editor.document.writeln('<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML//EN"><html> <head><title>LON-CAPA Reaction Editor</title></head><frameset rows="30%,*" border="0"> <frame src="/res/adm/pages/reactionresponse/reaction_viewer.html?inhibitmenu=yes" name="viewer" scrolling="no" /> <frame src="/res/adm/pages/reactionresponse/reaction_editor.html?inhibitmenu=yes&reaction=$reaction_es&id=$id_es&field=$field_es" name="editor" scrolling="no" /> </frameset> </html>'); |
} |
} |
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// --> |
</script> |
</script> |
<input type='button' value='Edit Reaction' onClick="javascript:create_reaction_window_${id}_${field}();void(0);" /> |
<input type='button' value='Edit Answer' onclick="javascript:create_reaction_window_${id}_${field}();void(0);" /> |
EDITREACTION |
EDITREACTION |
return $result; |
return $result; |
} |
} |
Line 298 sub start_reactionresponse {
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Line 354 sub start_reactionresponse {
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my $result; |
my $result; |
my $id = &Apache::response::start_response($parstack,$safeeval); |
my $id = &Apache::response::start_response($parstack,$safeeval); |
if ($target eq 'meta') { |
if ($target eq 'meta') { |
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$result=&Apache::response::meta_package_write('reactionresponse'); |
} elsif ($target eq 'web') { |
} elsif ($target eq 'web') { |
my $partid = $Apache::inputtags::part; |
my $partid = $Apache::inputtags::part; |
my $id = $Apache::inputtags::response['-1']; |
my $id = $Apache::inputtags::response['-1']; |
my $reaction=$Apache::lonhomework::history{"resource.$partid.$id.submission"}; |
my $reaction=$Apache::lonhomework::history{"resource.$partid.$id.submission"}; |
$result.=&edit_reaction_button($id,"HWVAL_$id",$reaction); |
if ($reaction eq '') { $reaction=&Apache::lonxml::get_param('initial',$parstack,$safeeval); } |
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my $status=$Apache::inputtags::status['-1']; |
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if ($status eq 'CAN_ANSWER') { |
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$result.=&edit_reaction_button($id,"HWVAL_$id",$reaction); |
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} |
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if ( &Apache::response::show_answer() ) { |
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my $ans=&Apache::lonxml::get_param('answer',$parstack,$safeeval); |
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$ans=~s/(\\|\')/\\$1/g; |
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$Apache::inputtags::answertxt{$id}=&Apache::run::run("return &chemparse('$ans');",$safeeval); |
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} |
} elsif ($target eq "edit") { |
} elsif ($target eq "edit") { |
$result .=&Apache::edit::tag_start($target,$token); |
$result .=&Apache::edit::tag_start($target,$token); |
my $answer=&Apache::lonxml::get_param('answer',$parstack, |
my $answer=&Apache::lonxml::get_param('answer',$parstack, |
Line 310 sub start_reactionresponse {
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Line 376 sub start_reactionresponse {
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$result .='<nobr>'. |
$result .='<nobr>'. |
&Apache::edit::text_arg('Answer:','answer',$token,40); |
&Apache::edit::text_arg('Answer:','answer',$token,40); |
$result .=&edit_reaction_button($id,&Apache::edit::html_element_name('answer'),$answer).'</nobr>'; |
$result .=&edit_reaction_button($id,&Apache::edit::html_element_name('answer'),$answer).'</nobr>'; |
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my $initial=&Apache::lonxml::get_param('initial',$parstack,$safeeval); |
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$result.='<nobr>'. |
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&Apache::edit::text_arg('Initial Reaction:','initial',$token,40); |
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$result .=&edit_reaction_button($id,&Apache::edit::html_element_name('initial'),$initial).'</nobr>'; |
|
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$result .=&Apache::edit::end_row().&Apache::edit::start_spanning_row(); |
$result .=&Apache::edit::end_row().&Apache::edit::start_spanning_row(); |
} elsif ($target eq 'modified') { |
} elsif ($target eq 'modified') { |
my $constructtag=&Apache::edit::get_new_args($token,$parstack, |
my $constructtag=&Apache::edit::get_new_args($token,$parstack, |
$safeeval,'answer'); |
$safeeval,'answer', |
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'initial'); |
if ($constructtag) { $result = &Apache::edit::rebuild_tag($token); } |
if ($constructtag) { $result = &Apache::edit::rebuild_tag($token); } |
} |
} |
return $result; |
return $result; |
Line 323 sub start_reactionresponse {
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Line 394 sub start_reactionresponse {
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sub end_reactionresponse { |
sub end_reactionresponse { |
my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_; |
my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_; |
my $result; |
my $result; |
if ($target eq 'grade' && defined($ENV{'form.submitted'})) { |
if ($target eq 'grade' && &Apache::response::submitted()) { |
&Apache::response::setup_params($$tagstack[-1]); |
&Apache::response::setup_params($$tagstack[-1],$safeeval); |
my $response = &Apache::response::getresponse(); |
my $response = &Apache::response::getresponse(); |
if ( $response =~ /[^\s]/) { |
if ( $response =~ /[^\s]/) { |
my $partid = $Apache::inputtags::part; |
my $partid = $Apache::inputtags::part; |
Line 335 sub end_reactionresponse {
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Line 406 sub end_reactionresponse {
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my $ad; |
my $ad; |
foreach my $answer (@answers) { |
foreach my $answer (@answers) { |
&Apache::lonxml::debug("submitted a $response for $answer<br \>\n"); |
&Apache::lonxml::debug("submitted a $response for $answer<br \>\n"); |
if ($response eq $answer) { |
if (&chem_standard_order($response) eq |
|
&chem_standard_order($answer)) { |
$ad='EXACT_ANS'; |
$ad='EXACT_ANS'; |
} else { |
} else { |
$ad='INCORRECT'; |
$ad='INCORRECT'; |
} |
} |
} |
} |
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if ($ad && $Apache::lonhomework::type eq 'survey') { |
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$ad='SUBMITTED'; |
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} |
&Apache::response::handle_previous(\%previous,$ad); |
&Apache::response::handle_previous(\%previous,$ad); |
$Apache::lonhomework::results{"resource.$partid.$id.awarddetail"}=$ad; |
$Apache::lonhomework::results{"resource.$partid.$id.awarddetail"}=$ad; |
} |
} |
Line 360 sub end_reactionresponse {
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Line 435 sub end_reactionresponse {
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return $result; |
return $result; |
} |
} |
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|
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sub start_chem { |
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my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style) = @_; |
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my $result = ''; |
|
if ($target eq 'tex' || $target eq 'web') { |
|
&Apache::lonxml::startredirection(); |
|
} |
|
return $result; |
|
} |
|
|
|
sub end_chem { |
|
my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style) = @_; |
|
my $result = ''; |
|
if ($target eq 'tex' || $target eq 'web') { |
|
@Apache::scripttag::parser_env = @_; |
|
if (!$Apache::lonxml::default_homework_loaded) { |
|
&Apache::lonxml::default_homework_load($safeeval); |
|
} |
|
my $innards=&Apache::lonxml::endredirection(); |
|
$result=&Apache::run::run("return &chemparse(q\0$innards\0);",$safeeval); |
|
} |
|
return $result; |
|
} |
|
|
1; |
1; |
__END__ |
__END__ |