--- loncom/homework/chemresponse.pm	2003/05/05 20:43:46	1.4
+++ loncom/homework/chemresponse.pm	2003/10/20 16:25:53	1.20
@@ -1,7 +1,7 @@
 # The LearningOnline Network with CAPA
 # chemical equation style response
 #
-# $Id: chemresponse.pm,v 1.4 2003/05/05 20:43:46 albertel Exp $
+# $Id: chemresponse.pm,v 1.20 2003/10/20 16:25:53 albertel Exp $
 #
 # Copyright Michigan State University Board of Trustees
 #
@@ -32,11 +32,11 @@ use Apache::lonxml;
 use Apache::lonnet;
 
 BEGIN {
-    &Apache::lonxml::register('Apache::chemresponse',('chemresponse','chemstructure','reactionresponse'));
+    &Apache::lonxml::register('Apache::chemresponse',('organicresponse','organicstructure','reactionresponse'));
 }
 
 sub seperate_jme_window {
-    my ($smile_input,$jme_input,$molecule)=@_;
+    my ($smile_input,$jme_input,$molecule,$options)=@_;
     my $smilesection;
     if (defined($smile_input)) {
 	$smilesection=<<SMILESECTION;
@@ -51,6 +51,7 @@ SMILESECTION
 JMESECTION
     }
 
+    if ($molecule) { $molecule='<param name="jme" value="'.$molecule.'" />'; }
     my $body=<<CHEMPAGE;
 <html>
 <head>
@@ -75,7 +76,8 @@ function openHelpWindow() {
 <center>
 <applet code="JME.class" name="JME" archive="/adm/jme/JME.jar" width="97%" height="78%">
 You have to enable Java and JavaScript on your machine.
-<param name="jme" value="$molecule" />
+$molecule
+<param name="options" value="$options" />
 </applet><br />
 <font face="arial,helvetica,sans-serif" size=-1><a href="http://www.molinspiration.com/jme/index.html">JME Editor</a> courtesy of Peter Ertl, Novartis</font>
 <form>
@@ -97,7 +99,7 @@ CHEMINPUT
     return $result;
 }
 
-sub start_chemresponse {
+sub start_organicresponse {
     my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
     my $result;
     my $partid = $Apache::inputtags::part;
@@ -111,18 +113,24 @@ sub start_chemresponse {
 	    $molecule=&Apache::lonxml::get_param('molecule',$parstack,
 						 $safeeval);
 	}
-	$result=&seperate_jme_window("HWVAL_$id","MOLECULE_$id",$molecule);
+	my $options=&Apache::lonxml::get_param('options',$parstack,
+					       $safeeval);
+	$result=&seperate_jme_window("HWVAL_$id","MOLECULE_$id",$molecule,$options);
 	$result.= '<input type="hidden" name="MOLECULE_'.$id.'" value="" />';
     } elsif ($target eq 'edit') {
 	$result .=&Apache::edit::tag_start($target,$token);
-	$result .=&Apache::edit::text_arg('Starting Molecule:','molecule',
-					  $token,40);
+	my $options=&Apache::lonxml::get_param('options',$parstack,
+					       $safeeval);
+	if ($options !~ /multipart/) { $options.=',multipart'; }
+	$result .='<nobr>'.
+	    &Apache::edit::text_arg('Starting Molecule:','molecule',
+				    $token,40);
 	my $molecule=&Apache::lonxml::get_param('molecule',$parstack,
 						$safeeval);
 	$result .=&seperate_jme_window(undef,
 		      &Apache::edit::html_element_name('molecule'),
-		      $molecule);
-	$result .='<br />';
+		      $molecule,$options);
+	$result .='</nobr><br /><nobr>';
 	$result .=&Apache::edit::text_arg('Correct Answer:','answer',
 					  $token,40);
 	$result .=&Apache::edit::hidden_arg('jmeanswer',$token);
@@ -131,18 +139,27 @@ sub start_chemresponse {
 	$result .=&seperate_jme_window(
                       &Apache::edit::html_element_name('answer'),
                       &Apache::edit::html_element_name('jmeanswer'),
-		      $jmeanswer);
+		      $jmeanswer,$options);
+	$result .='</nobr><br />';
+	$result .=&Apache::edit::checked_arg('Options:','options',
+				    [ ['autoez','Auto E,Z sterochemistry'],
+				      ['multipart','Multipart Structures'],
+				      ['nostereo','No stereochemistry'],
+				      ['reaction','Is a reaction'],
+				      ['number','Able to number atoms'] ],
+					     ,$token);
 	$result .=&Apache::edit::end_row().&Apache::edit::start_spanning_row();
     } elsif ($target eq 'modified') {
 	my $constructtag=&Apache::edit::get_new_args($token,$parstack,
 						     $safeeval,'molecule',
-						     'answer','jmeanswer');
+						     'answer','jmeanswer',
+						     'options');
 	if ($constructtag) { $result = &Apache::edit::rebuild_tag($token); }
     }
     return $result;
 }
 
-sub end_chemresponse {
+sub end_organicresponse {
     my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
     my $result;
     if ($target eq 'grade' && defined($ENV{'form.submitted'})) {
@@ -151,15 +168,18 @@ sub end_chemresponse {
 	if ( $response =~ /[^\s]/) {
 	    my $partid = $Apache::inputtags::part;
 	    my $id = $Apache::inputtags::response['-1'];
-	    my $answer=&Apache::lonxml::get_param('answer',$parstack,$safeeval);
+	    my (@answers)=&Apache::lonxml::get_param_var('answer',$parstack,$safeeval);
 	    my %previous = &Apache::response::check_for_previous($response,$partid,$id);
 	    $Apache::lonhomework::results{"resource.$partid.$id.submission"}=$response;
-	    &Apache::lonxml::debug("submitted a $response for $answer<br \>\n");
 	    my $ad;
-	    if ($response eq $answer) {
-		$ad='EXACT_ANS';
-	    } else {
-		$ad='INCORRECT';
+	    foreach my $answer (@answers) {
+		&Apache::lonxml::debug("submitted a $response for $answer<br \>\n");
+		if ($response eq $answer) {
+		    $ad='EXACT_ANS';
+		    last;
+		} else {
+		    $ad='INCORRECT';
+		}
 	    }
 	    &Apache::response::handle_previous(\%previous,$ad);
 	    $Apache::lonhomework::results{"resource.$partid.$id.awarddetail"}=$ad;
@@ -167,45 +187,86 @@ sub end_chemresponse {
 	}
     } elsif ($target eq "edit") {
 	$result.= &Apache::edit::tag_end($target,$token,'');
+    } elsif ($target eq 'answer') {
+	my (@answers)=&Apache::lonxml::get_param_var('answer',$parstack,
+						     $safeeval);
+	$result.=&Apache::response::answer_header('organicresponse');
+	foreach my $answer (@answers) {
+	    $result.=&Apache::response::answer_part('organicresponse',$answer);
+	}
+	$result.=&Apache::response::answer_footer('organicresponse');
     }
     &Apache::response::end_response;
     return $result;
 }
 
-sub start_chemstructure {
+sub start_organicstructure {
     my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
     my $result;
     if ($target eq 'web') {
 	my $width=&Apache::lonxml::get_param('width',$parstack,$safeeval);
-	my $height=&Apache::lonxml::get_param('height',$parstack,$safeeval);
 	my $molecule=&Apache::lonxml::get_param('molecule',$parstack,$safeeval);
-	$result=<<CHEMOUTPUT;
-<applet code="JME.class" archive="/adm/jme/JME.jar" width="$width" height="$height">
-<param name="options" value="depict border" />
-<param name="jme" value="$molecule" />
-</applet>
-CHEMOUTPUT
+	my $options=&Apache::lonxml::get_param('options',$parstack,$safeeval);
+	my $id=time.'_'.int(rand(1000));
+	$result="<img src='/cgi-bin/convertjme.pl?$id'";
+	if ($options =~ /border/) { $result.= ' border="1"'; }
+	$result.=' />';
+	&Apache::lonnet::appenv(
+            'cgi.'.$id.'.JME'   => &Apache::lonnet::escape($molecule),
+	    'cgi.'.$id.'.PNG' => 1,
+	    'cgi.'.$id.'.WIDTH' => $width );
+    } elsif ($target eq 'tex') {
+	my $texwidth=&Apache::lonxml::get_param('texwidth',$parstack,$safeeval,1);
+	if (!$texwidth) { $texwidth='90'; }
+	my $molecule=&Apache::lonxml::get_param('molecule',$parstack,$safeeval);
+	my $options=&Apache::lonxml::get_param('options',$parstack,$safeeval);
+	my $filename = $ENV{'user.name'}.'_'.$ENV{'user.domain'}.
+	    '_'.time.'_'.$$.int(rand(1000)).'_organicstructure';
+	my $id=$filename;
+	&Apache::lonnet::appenv(
+		     'cgi.'.$id.'.JME'   => &Apache::lonnet::escape($molecule),
+		     'cgi.'.$id.'.PS' => 1,
+		     'cgi.'.$id.'.WIDTH' => $texwidth );
+	$id=&Apache::lonnet::escape($id);
+	&Apache::lonxml::register_ssi("/cgi-bin/convertjme.pl?$id");
+	if ($options =~ /border/) { $result.= '\fbox{'; }
+	$result .= '\graphicspath{{/home/httpd/perl/tmp/}}\includegraphics[width='.$texwidth.' mm]{'.$filename.'.eps}';
+	if ($options =~ /border/) { $result.= '} '; }
     } elsif ($target eq 'edit') {
 	$result .=&Apache::edit::tag_start($target,$token);
 	$result .=&Apache::edit::text_arg('Width:','width',$token,5);
 	$result .=&Apache::edit::text_arg('Height:','height',$token,5);
+	$result .=&Apache::edit::text_arg('TeXwidth:','texwidth',$token,5);
+	$result .='<nobr>';
 	$result .=&Apache::edit::text_arg('Molecule:','molecule',$token,40);
 	my $molecule=&Apache::lonxml::get_param('molecule',$parstack,
 						$safeeval);
+	my $options=&Apache::lonxml::get_param('options',$parstack,
+					       $safeeval);
+	if ($options !~ /reaction/) {
+	    $options.= ',multipart,number';
+	}
+						   
 	$result .=&seperate_jme_window(undef,
-		      &Apache::edit::html_element_name('molecule'),
-		      $molecule);
+				 &Apache::edit::html_element_name('molecule'),
+				       $molecule,$options);
+	$result.="</nobr><br />";
+	$result .=&Apache::edit::checked_arg('Options:','options',
+					     [ ['reaction','Is a reaction'],
+					       ['border','Draw a border'] ],
+					     $token);
 	$result .=&Apache::edit::end_row().&Apache::edit::start_spanning_row();
     } elsif ($target eq 'modified') {
 	my $constructtag=&Apache::edit::get_new_args($token,$parstack,
 						     $safeeval,'molecule',
-						     'width','height');
+						     'width','height',
+						     'texwidth','options');
 	if ($constructtag) { $result = &Apache::edit::rebuild_tag($token); }
     }
     return $result;
 }
 
-sub end_chemstructure {
+sub end_organicstructure {
     my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
     my $result;
     if ($target eq "edit") {
@@ -214,188 +275,21 @@ sub end_chemstructure {
     return $result;
 }
 
-sub reaction_javascript {
-    my $result=<<REACTIONJAVASCRIPT;
-    <SCRIPT language="JavaScript">
-
-var level;
-var reactants;
-var products;
-
-
-function parse_reaction(string) {
-  var reaction_array = string.split('->');
-  var i;
-  reactants = new Array(0);
-  products = new Array(0);
-
-  if (reaction_array.length > 0)
-    reactants = reaction_array[0].split(' +');
-  if (reaction_array.length > 1)
-    products = reaction_array[1].split(' +');
-}
-
-function to_capa(string) {
-  var reaction = "";
-  var i;
-
-  parse_reaction(string);
-
-  for (i = 0; i < reactants.length; i++)
-    reactants[i] = capa_component(reactants[i]);
-  for (i = 0; i < products.length; i++)
-    products[i] = capa_component(products[i]);
-
-  reactants.sort();
-  products.sort();
-
-  for (i = 0; i < reactants.length-1; i++) {
-    reaction += reactants[i];
-    reaction += " + ";
-  }
-  if (i < reactants.length)
-    reaction += reactants[i];
-  if (products.length > 0) {
-    reaction += " -> ";
-    for (i = 0; i < products.length-1; i++) {
-      reaction += products[i];
-      reaction += " + ";
-    }
-    if (i < products.length)
-      reaction += products[i];
-  }
-
-  return reaction;
-}
-
-function capa_component(string) {
-  var reactant = "";
-  var i = 0;
-  level = 0;
-
-  for (;string.substring(i,i+1) == ' ';i++)
-    ;
-  for (;isDigit(string.substring(i,i+1));i++)
-    reactant += string.substring(i,i+1);
-  for (;i < string.length;i++)
-    reactant +=  capa_char(string.substring(i,i+1));
-
-  return reactant;
-}
-
-function capa_char(chr) {
-  if (level == 0) { // baseline
-    if (chr == '^')
-      level = 1;
-    if (chr == ' ')
-      return "";
-    return chr;
-  }
-  if (level == 1) { // superscript
-    if (isDigit(chr))
-      return chr;
-    level = 0;
-    return chr;
-  }
-}
-
-function to_html(string) {
-  var reaction = "";
-  var i;
-
-  parse_reaction(string);
-  for (i = 0; i < reactants.length-1; i++) {
-    reaction += html_component(reactants[i]);
-    reaction += " + ";
-  }
-  if (i < reactants.length)
-    reaction += html_component(reactants[i]);
-
-  if (products.length > 0) {
-    reaction += " <font face=symbol>&reg;</font> ";
-    for (i = 0; i < products.length-1; i++) {
-      reaction += html_component(products[i]);
-      reaction += " + ";
-    }
-    if (i < products.length)
-      reaction += html_component(products[i]);
-  }
-
-  return reaction;
-}
-
-function html_component(string) {
-  var reactant = "";
-  var i = 0;
-  level = 0;
-
-  for (;string.substring(i,i+1) == ' ';i++)
-    ;
-  for (;isDigit(string.substring(i,i+1));i++)
-    reactant += string.substring(i,i+1);
-  for (;i < string.length;i++)
-    reactant +=  html_char(string.substring(i,i+1));
-
-  return reactant;
-}
-
-function html_char(chr) {
-  if (level == 0) { // baseline
-    if (isDigit(chr))
-      return chr.sub();
-    if (chr == '^') {
-      level = 1;
-      return "";
+sub edit_reaction_button {
+    my ($id,$field,$reaction)=@_;
+    my $id_es=&Apache::lonnet::escape($id);
+    my $field_es=&Apache::lonnet::escape($field);
+    my $reaction_es=&Apache::lonnet::escape($reaction);
+    my $result=<<EDITREACTION;
+<script type="text/javascript">
+    function create_reaction_window_${id}_${field} () {
+	editor=window.open('','','width=500,height=270,scrollbars=no,resizable=yes');
+	editor.document.open('text/html','replace');
+	editor.document.writeln('<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML//EN"><html> <head><title>LON-CAPA Reaction Editor</title></head><frameset rows="30%,*" border="0">  <frame src="/res/adm/pages/reactionresponse/reaction_viewer.html" name="viewer" scrolling="no" />  <frame src="/res/adm/pages/reactionresponse/reaction_editor.html?reaction=$reaction_es&id=$id_es&field=$field_es" name="editor" scrolling="no" /> </frameset> </html>');
     }
-    if (chr == '+') // baseline or superscript
-      return "?";
-    if (chr == ' ')
-      return "";
-    return chr;
-  }
-  if (level == 1) { // superscript
-    if (isDigit(chr))
-      return chr.sup();
-    if (chr == '+' || chr == '-') {
-      level = 0;
-      return chr.sup();
-    }
-    if (chr == ' ') {
-      level = 0;
-      return "";
-    }
-    level = 0;
-    return chr;
-  }
-}
-
-function isDigit(string) {
-  if (string >= '0' && string <='9')
-    return 1;
-  else
-    return 0;
-}
-
-function openHelpWindow() {
-  window.open("reaction_help.html","","scrollbars=yes,resizable=yes,width=550,height=600")
-}
-
-function submitReaction() {
-  reaction = to_capa(document.form.text.value);
-  if (reaction == "") {
-    alert("Nothing to submit");
-  }
-  else {
-    name = "INPUT" + ((problem < 10) ? "0" : "") + problem;
-    i = 0;
-    while (parent.opener.document.CAPA.elements[i].name != name)
-      i++;
-    parent.opener.document.CAPA.elements[i].value = reaction;
-    parent.opener.document.CAPA.submit();
-  }
-}
-</SCRIPT>
-REACTIONJAVASCRIPT
+</script>
+<input type='button' value='Edit Reaction' onClick="javascript:create_reaction_window_${id}_${field}();void(0);" />
+EDITREACTION
     return $result;
 }
 
@@ -403,11 +297,25 @@ sub start_reactionresponse {
     my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
     my $result;
     my $id = &Apache::response::start_response($parstack,$safeeval);
-    if ($target eq 'web') {
-	$result.=&reaction_javascript();
-#	$result.='<iframe name="REACTION_'.$id.'" width="200" height="100" src="/adm/jme/reaction_viewer.html"></iframe>';
-	$result.='<input type="button" value="Check" onClick = "javascript:newWindow=open(\'\',\'new_W\',\'width=500,height=200,scrollbars=1\');newWindow.document.open(\'text/html\',\'replace\');newWindow.document.writeln(\'<center><br />\'+to_html(document.lonhomework.HWVAL_'.$id.'.value)+\'</center><input type="button" value="  Close  " onClick = "parent.window.close()" />\');newWindow.document.close()" />'
+    if ($target eq 'meta') {
+    } elsif ($target eq 'web') {
+	my $partid = $Apache::inputtags::part;
+	my $id = $Apache::inputtags::response['-1'];
+	my $reaction=$Apache::lonhomework::history{"resource.$partid.$id.submission"};
+	$result.=&edit_reaction_button($id,"HWVAL_$id",$reaction);
     } elsif ($target eq "edit") {
+	$result .=&Apache::edit::tag_start($target,$token);
+	my $answer=&Apache::lonxml::get_param('answer',$parstack,
+						$safeeval);
+	$result .='<nobr>'.
+	    &Apache::edit::text_arg('Answer:','answer',$token,40);
+	$result .=&edit_reaction_button($id,&Apache::edit::html_element_name('answer'),$answer).'</nobr>';
+	
+	$result .=&Apache::edit::end_row().&Apache::edit::start_spanning_row();
+    }  elsif ($target eq 'modified') {
+	my $constructtag=&Apache::edit::get_new_args($token,$parstack,
+						     $safeeval,'answer');
+	if ($constructtag) { $result = &Apache::edit::rebuild_tag($token); }
     }
     return $result;
 }
@@ -415,8 +323,38 @@ sub start_reactionresponse {
 sub end_reactionresponse {
     my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
     my $result;
-    if ($target eq "edit") {
+    if ($target eq 'grade' && defined($ENV{'form.submitted'})) {
+	&Apache::response::setup_params($$tagstack[-1]);
+	my $response = &Apache::response::getresponse();
+	if ( $response =~ /[^\s]/) {
+	    my $partid = $Apache::inputtags::part;
+	    my $id = $Apache::inputtags::response['-1'];
+	    my (@answers)=&Apache::lonxml::get_param_var('answer',$parstack,$safeeval);
+	    my %previous = &Apache::response::check_for_previous($response,$partid,$id);
+	    $Apache::lonhomework::results{"resource.$partid.$id.submission"}=$response;
+	    my $ad;
+	    foreach my $answer (@answers) {
+		&Apache::lonxml::debug("submitted a $response for $answer<br \>\n");
+		if ($response eq $answer) {
+		    $ad='EXACT_ANS';
+		} else {
+		    $ad='INCORRECT';
+		}
+	    }
+	    &Apache::response::handle_previous(\%previous,$ad);
+	    $Apache::lonhomework::results{"resource.$partid.$id.awarddetail"}=$ad;
+	}
+    }  elsif ($target eq "edit") {
 	$result.= &Apache::edit::tag_end($target,$token,'');
+    } elsif ($target eq 'answer') {
+	my (@answers)=&Apache::lonxml::get_param_var('answer',$parstack,
+						     $safeeval);
+	$result.=&Apache::response::answer_header('reactionresponse');
+	foreach my $answer (@answers) {
+	    $result.=&Apache::response::answer_part('reactionresponse',
+						    $answer);
+	}
+	$result.=&Apache::response::answer_footer('reactionresponse');
     }
     &Apache::response::end_response;
     return $result;