--- loncom/homework/chemresponse.pm	2005/07/05 10:06:34	1.62
+++ loncom/homework/chemresponse.pm	2007/04/18 00:48:06	1.73
@@ -1,7 +1,7 @@
 # The LearningOnline Network with CAPA
 # chemical equation style response
 #
-# $Id: chemresponse.pm,v 1.62 2005/07/05 10:06:34 foxr Exp $
+# $Id: chemresponse.pm,v 1.73 2007/04/18 00:48:06 albertel Exp $
 #
 # Copyright Michigan State University Board of Trustees
 #
@@ -31,6 +31,9 @@ use strict;
 use Apache::lonxml;
 use Apache::lonnet;
 use Apache::lonlocal;
+use lib '/home/httpd/lib/perl/';
+use LONCAPA;
+ 
 
 BEGIN {
     &Apache::lonxml::register('Apache::chemresponse',('organicresponse','organicstructure','reactionresponse','chem'));
@@ -87,10 +90,7 @@ JMESECTION
 	    '<input type="button" name="submit" value="Insert Answer" onclick="javascript:submitSmiles();" />';
     }
 
-    my $body=<<CHEMPAGE;
-<html>
-<head>
-<title>Molecule Editor</title>
+    my $js = <<CHEMJS;
 <script type="text/javascript">
 function submitSmiles() {
     jmeFile = document.applets.JME.jmeFile();
@@ -107,8 +107,18 @@ function openHelpWindow() {
 }
 function substituent(r) {document.applets.JME.setSubstituent(r);}
 </script>
-</head>
-<body bgcolor="#ffffff">
+CHEMJS
+
+    my $start_page = 
+        &Apache::loncommon::start_page('Molecule Editor',undef,
+				       {'only_body' => 1,
+					'js_ready'  => 1,
+					'bgcolor'   => '#FFFFFF',});
+    my $end_page =
+ 	&Apache::loncommon::end_page({'js_ready' => 1,});
+	
+    my $body=<<CHEMPAGE;
+$js
 <center>
 <form>
   <table width="440"><tr>
@@ -146,17 +156,26 @@ $insert_answer
 <input type="button" value="  Help  " onclick = "javascript:openHelpWindow()" />
 </form>
 </center>
-</body>
-</html>
 CHEMPAGE
-    $body=&HTML::Entities::encode($body,'<>&"');
-    $body=~s/\n/ /g;
+
+    $body=&Apache::loncommon::js_ready($body);
     my $nothing=&Apache::lonhtmlcommon::javascript_nothing();
     my $docopen=&Apache::lonhtmlcommon::javascript_docopen();
     my $display=&mt('Draw Molecule');
     if (defined($shown_text)) { $display=&mt($shown_text); }
+    my $function = 
+	'LONCAPA_draw_molecule_'.&Apache::lonhtmlcommon::get_uniq_name();
     my $result=<<CHEMINPUT;
-<input type="button" value="$display" onclick="javascript:editor=window.open($nothing,'jmeedit','width=500,height=500,menubar=no,scrollbars=no,resizable=yes');editor.$docopen;editor.document.write('$body');editor.document.close();editor.focus()" />
+<script type="text/javascript">
+    function $function() {
+	editor=window.open($nothing,'jmeedit','width=500,height=500,menubar=no,scrollbars=no,resizable=yes');
+	editor.$docopen;
+	editor.document.write('$start_page $body $end_page');
+	editor.document.close();
+	editor.focus();
+    }
+</script>
+<input type="button" value="$display" onclick="javascript:$function();void(0);" />
 CHEMINPUT
     return $result;
 }
@@ -168,7 +187,7 @@ sub jme_img {
     if ($options =~ /border/) { $result.= ' border="1"'; }
     $result.=' />';
     &Apache::lonnet::appenv('cgi.'.$id.'.JME'   =>
-			    &Apache::lonnet::escape($jme),
+			    &escape($jme),
 			    'cgi.'.$id.'.PNG'   => 1,
 			    'cgi.'.$id.'.WIDTH' => $width);
     return $result;
@@ -226,7 +245,9 @@ sub start_organicresponse {
 	$result .='</nobr><br /><nobr>';
 	$result .=&Apache::edit::text_arg('Correct Answer:','answer',
 					  $token,40);
-	$result .=&Apache::edit::hidden_arg('jmeanswer',$token);
+	$result .='</nobr><br /><nobr>';
+	$result .=&Apache::edit::text_arg('JME string of the answer (automatically updated when using the Draw Molecule button):',
+					  'jmeanswer',$token);
 	my $jmeanswer=&Apache::lonxml::get_param('jmeanswer',$parstack,
 						 $safeeval);
 	$result .=&separate_jme_window(
@@ -251,18 +272,30 @@ sub start_organicresponse {
 						     'options','width');
 	if ($constructtag) { $result = &Apache::edit::rebuild_tag($token); }
     }
+
     return $result;
 }
 
 sub end_organicresponse {
     my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
     my $result;
-    if ($target eq 'grade' && &Apache::response::submitted()) {
+
+    my $partid = $Apache::inputtags::part;
+    my $id = $Apache::inputtags::response['-1'];
+
+    if ($target eq 'grade' 
+	&& &Apache::response::submitted()
+	&& $Apache::lonhomework::type eq 'exam') {
+
+	&Apache::response::scored_response($partid,$id);
+
+    } elsif ($target eq 'grade' 
+	&& &Apache::response::submitted()
+	&& $Apache::lonhomework::type ne 'exam') {
+
 	&Apache::response::setup_params($$tagstack[-1],$safeeval);
 	my $response = &Apache::response::getresponse();
 	if ( $response =~ /[^\s]/) {
-	    my $partid = $Apache::inputtags::part;
-	    my $id = $Apache::inputtags::response['-1'];
 	    my (@answers)=&Apache::lonxml::get_param_var('answer',$parstack,$safeeval);
 	    my %previous = &Apache::response::check_for_previous($response,$partid,$id);
 	    $Apache::lonhomework::results{"resource.$partid.$id.submission"}=$response;
@@ -294,7 +327,24 @@ sub end_organicresponse {
 	}
 	$result.=&Apache::response::answer_footer('organicresponse');
     }
-    &Apache::response::end_response;
+    if ($target eq 'web') {
+	&Apache::response::setup_prior_tries_hash(\&format_prior_answer_organic,
+						  ['molecule'])
+    }
+
+    if ($target eq 'grade' || $target eq 'web' || $target eq 'answer' || 
+	$target eq 'tex' || $target eq 'analyze') {
+	&Apache::lonxml::increment_counter(&Apache::response::repetition());
+    }
+    &Apache::response::end_response();
+    return $result;
+}
+
+sub format_prior_answer_organic {
+    my ($mode,$answer,$other_data) = @_;
+    my $result=&mt('Smile representation: "[_1]"','<tt>'.$answer.'</tt>');
+    my $jme=$other_data->[0];
+    $result.=&jme_img($jme,$answer,400);
     return $result;
 }
 
@@ -310,7 +360,7 @@ sub start_organicstructure {
 	if ($options =~ /border/) { $result.= ' border="1"'; }
 	$result.=' />';
 	&Apache::lonnet::appenv(
-            'cgi.'.$id.'.JME'   => &Apache::lonnet::escape($molecule),
+            'cgi.'.$id.'.JME'   => &escape($molecule),
 	    'cgi.'.$id.'.PNG' => 1,
 	    'cgi.'.$id.'.WIDTH' => $width );
     } elsif ($target eq 'tex') {
@@ -326,10 +376,10 @@ sub start_organicstructure {
 	    '_'.time.'_'.$$.int(rand(1000)).'_organicstructure';
 	my $id=$filename;
 	&Apache::lonnet::appenv(
-		     'cgi.'.$id.'.JME'   => &Apache::lonnet::escape($molecule),
+		     'cgi.'.$id.'.JME'   => &escape($molecule),
 		     'cgi.'.$id.'.PS' => 1,
 		     'cgi.'.$id.'.WIDTH' => $texwidth );
-	$id=&Apache::lonnet::escape($id);
+	$id=&escape($id);
 	&Apache::lonxml::register_ssi("/cgi-bin/convertjme.pl?$id");
 	if ($options =~ /border/) { $result.= '\fbox{'; }
 	$result .= '\graphicspath{{/home/httpd/perl/tmp/}}\includegraphics[width='.$texwidth.' mm]{'.$filename.'.eps}';
@@ -378,17 +428,28 @@ sub end_organicstructure {
 
 sub edit_reaction_button {
     my ($id,$field,$reaction)=@_;
-    my $id_es=&Apache::lonnet::escape($id);
-    my $field_es=&Apache::lonnet::escape($field);
-    my $reaction_es=&Apache::lonnet::escape($reaction);
+    my $id_es=&escape($id);
+    my $field_es=&escape($field);
+    my $reaction_es=&escape($reaction);
     my $docopen=&Apache::lonhtmlcommon::javascript_docopen();
+    my $start_page = 
+	&Apache::loncommon::start_page('LON-CAPA Reaction Editor',undef,
+				       {'frameset'    => 1,
+					'js_ready'    => 1,
+					'add_entries' => {
+					    'rows'   => "30%,*",
+					    'border' => "0",}},);
+    my $end_page = 
+	&Apache::loncommon::end_page({'frameset' => 1,
+				      'js_ready' => 1});
     my $result=<<EDITREACTION;
 <script type="text/javascript">
 // <!--
     function create_reaction_window_${id}_${field} () {
 	editor=window.open('','','width=500,height=270,scrollbars=no,resizable=yes');
 	editor.$docopen;
-	editor.document.writeln('<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML//EN"><html> <head><title>LON-CAPA Reaction Editor</title></head><frameset rows="30%,*" border="0">  <frame src="/res/adm/pages/reactionresponse/reaction_viewer.html?inhibitmenu=yes" name="viewer" scrolling="no" />  <frame src="/res/adm/pages/reactionresponse/reaction_editor.html?inhibitmenu=yes&reaction=$reaction_es&id=$id_es&field=$field_es" name="editor" scrolling="no" /> </frameset> </html>');
+	editor.document.writeln('$start_page <frame src="/res/adm/pages/reactionresponse/reaction_viewer.html?inhibitmenu=yes" name="viewer" scrolling="no" />  <frame src="/res/adm/pages/reactionresponse/reaction_editor.html?inhibitmenu=yes&reaction=$reaction_es&id=$id_es&field=$field_es" name="editor" scrolling="no" /> $end_page');
+	editor.document.close();
     }
 // -->
 </script>
@@ -418,7 +479,7 @@ sub start_reactionresponse {
 		&Apache::lonxml::default_homework_load($safeeval);
 	    }
 	    @Apache::scripttag::parser_env = @_;
-	    $Apache::inputtags::answertxt{$id}=&Apache::run::run("return &chemparse(q\0$ans\0);",$safeeval);
+	    $Apache::inputtags::answertxt{$id}=[&Apache::run::run("return &chemparse(q\0$ans\0);",$safeeval)];
 	}
     } elsif ($target eq "edit") {
 	$result .=&Apache::edit::tag_start($target,$token);
@@ -445,12 +506,23 @@ sub start_reactionresponse {
 sub end_reactionresponse {
     my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style)=@_;
     my $result;
-    if ($target eq 'grade' && &Apache::response::submitted()) {
+
+    my $partid = $Apache::inputtags::part;
+    my $id = $Apache::inputtags::response['-1'];
+
+    if ($target eq 'grade' 
+	&& &Apache::response::submitted()
+	&& $Apache::lonhomework::type eq 'exam') {
+
+	&Apache::response::scored_response($partid,$id);
+
+    } elsif ($target eq 'grade' 
+	&& &Apache::response::submitted()
+	&& $Apache::lonhomework::type ne 'exam') {
+
 	&Apache::response::setup_params($$tagstack[-1],$safeeval);
 	my $response = &Apache::response::getresponse();
 	if ( $response =~ /[^\s]/) {
-	    my $partid = $Apache::inputtags::part;
-	    my $id = $Apache::inputtags::response['-1'];
 	    my (@answers)=&Apache::lonxml::get_param_var('answer',$parstack,$safeeval);
 	    my %previous = &Apache::response::check_for_previous($response,$partid,$id);
 	    $Apache::lonhomework::results{"resource.$partid.$id.submission"}=$response;
@@ -482,10 +554,24 @@ sub end_reactionresponse {
 	}
 	$result.=&Apache::response::answer_footer('reactionresponse');
     }
-    &Apache::response::end_response;
+    if ($target eq 'web') {
+	&Apache::response::setup_prior_tries_hash(\&format_prior_response_reaction);
+    }
+
+    if ($target eq 'grade' || $target eq 'web' || $target eq 'answer' || 
+	$target eq 'tex' || $target eq 'analyze') {
+	&Apache::lonxml::increment_counter(&Apache::response::repetition());
+    }
+    &Apache::response::end_response();
     return $result;
 }
 
+sub format_prior_response_reaction {
+    my ($mode,$answer) =@_;
+    return '<span class="LC_prior_reaction">'.
+	    &HTML::Entities::encode($answer,'"<>&').'</span>';
+}
+
 sub start_chem {
     my ($target,$token,$tagstack,$parstack,$parser,$safeeval,$style) = @_;
     my $result = '';