--- loncom/homework/grades.pm	2013/08/15 12:38:30	1.701
+++ loncom/homework/grades.pm	2019/01/31 17:44:18	1.757
@@ -1,7 +1,7 @@
 # The LearningOnline Network with CAPA
 # The LON-CAPA Grading handler
 #
-# $Id: grades.pm,v 1.701 2013/08/15 12:38:30 bisitz Exp $
+# $Id: grades.pm,v 1.757 2019/01/31 17:44:18 raeburn Exp $
 #
 # Copyright Michigan State University Board of Trustees
 #
@@ -46,6 +46,7 @@ use Apache::lonenc;
 use Apache::lonstathelpers;
 use Apache::lonquickgrades;
 use Apache::bridgetask();
+use Apache::lontexconvert();
 use String::Similarity;
 use LONCAPA;
 
@@ -116,7 +117,11 @@ sub getpartlist {
     my $res      = $navmap->getBySymb($symb);
     my $partlist = $res->parts();
     my $url      = $res->src();
-    my @metakeys = split(/,/,&Apache::lonnet::metadata($url,'keys'));
+    my $toolsymb;
+    if ($url =~ /ext\.tool$/) {
+        $toolsymb = $symb;
+    }
+    my @metakeys = split(/,/,&Apache::lonnet::metadata($url,'keys',$toolsymb));
 
     my @stores;
     foreach my $part (@{ $partlist }) {
@@ -293,7 +298,7 @@ sub reset_caches {
     }
 
     sub scantron_partids_tograde {
-        my ($resource,$cid,$uname,$udom,$check_for_randomlist,$bubbles_per_row) = @_;
+        my ($resource,$cid,$uname,$udom,$check_for_randomlist,$bubbles_per_row,$scancode) = @_;
         my (%analysis,@parts);
         if (ref($resource)) {
             my $symb = $resource->symb();
@@ -301,6 +306,13 @@ sub reset_caches {
             if ($check_for_randomlist) {
                 $add_to_form = { 'check_parts_withrandomlist' => 1,};
             }
+            if ($scancode) {
+                if (ref($add_to_form) eq 'HASH') {
+                    $add_to_form->{'code_for_randomlist'} = $scancode;
+                } else {
+                    $add_to_form = { 'code_for_randomlist' => $scancode,};
+                }
+            }
             my $analyze = 
                 &get_analyze($symb,$uname,$udom,undef,$add_to_form,
                              undef,undef,undef,$bubbles_per_row);
@@ -330,6 +342,8 @@ sub cleanRecord {
     my $grayFont = '<span class="LC_internal_info">';
     if ($response =~ /^(option|rank)$/) {
 	my %answer=&Apache::lonnet::str2hash($answer);
+        my @answer = %answer;
+        %answer = map {&HTML::Entities::encode($_, '"<>&')}  @answer;
 	my %grading=&Apache::lonnet::str2hash($record->{$version."resource.$partid.$respid.submissiongrading"});
 	my ($toprow,$bottomrow);
 	foreach my $foil (@$order) {
@@ -346,6 +360,8 @@ sub cleanRecord {
 	    $bottomrow.'</tr></table></blockquote>';
     } elsif ($response eq 'match') {
 	my %answer=&Apache::lonnet::str2hash($answer);
+        my @answer = %answer;
+        %answer = map {&HTML::Entities::encode($_, '"<>&')}  @answer;
 	my %grading=&Apache::lonnet::str2hash($record->{$version."resource.$partid.$respid.submissiongrading"});
 	my @items=&Apache::lonnet::str2array($record->{$version."resource.$partid.$respid.submissionitems"});
 	my ($toprow,$middlerow,$bottomrow);
@@ -368,6 +384,8 @@ sub cleanRecord {
 	    $bottomrow.'</tr></table></blockquote>';
     } elsif ($response eq 'radiobutton') {
 	my %answer=&Apache::lonnet::str2hash($answer);
+        my @answer = %answer;
+        %answer = map {&HTML::Entities::encode($_, '"<>&')}  @answer;
 	my ($toprow,$bottomrow);
 	my $correct = 
 	    &get_radiobutton_correct_foil($partid,$respid,$symb,$uname,$udom,$type,$trial,$rndseed);
@@ -400,10 +418,12 @@ sub cleanRecord {
 	    $env{'form.kwstyle'}  = $keyhash{$loginuser.'_kwstyle'} ne '' ? $keyhash{$loginuser.'_kwstyle'} : '';
 	    $env{'form.'.$symb} = 1; # so that we don't have to read it from disk for multiple sub of the same prob.
 	}
-	$answer =~ s-\n-<br />-g;
+        $answer = &Apache::lontexconvert::msgtexconverted($answer);
 	return '<br /><br /><blockquote><tt>'.&keywords_highlight($answer).'</tt></blockquote>';
+
     } elsif ( $response eq 'organic') {
-	my $result='Smile representation: "<tt>'.$answer.'</tt>"';
+        my $result=&mt('Smile representation: [_1]',
+                           '"<tt>'.&HTML::Entities::encode($answer, '"<>&').'</tt>"');
 	my $jme=$record->{$version."resource.$partid.$respid.molecule"};
 	$result.=&Apache::chemresponse::jme_img($jme,$answer,400);
 	return $result;
@@ -437,12 +457,14 @@ sub cleanRecord {
 	    $result.='</ul>';
 	    return $result;
 	}
-    } elsif ( $response =~ m/(?:numerical|formula)/) {
+    } elsif ( $response =~ m/(?:numerical|formula|custom)/) {
+        # Respect multiple input fields, see Bug #5409
 	$answer = 
 	    &Apache::loncommon::format_previous_attempt_value('submission',
 							      $answer);
+	return $answer;
     }
-    return $answer;
+    return &HTML::Entities::encode($answer, '"<>&');
 }
 
 #-- A couple of common js functions
@@ -482,7 +504,7 @@ COMMONJSFUNCTIONS
 #--- Dumps the class list with usernames,list of sections,
 #--- section, ids and fullnames for each user.
 sub getclasslist {
-    my ($getsec,$filterlist,$getgroup) = @_;
+    my ($getsec,$filterbyaccstatus,$getgroup,$symb,$submitonly,$filterbysubmstatus) = @_;
     my @getsec;
     my @getgroup;
     my $stu_status = join(':',&Apache::loncommon::get_env_multiple('form.Status'));
@@ -510,6 +532,13 @@ sub getclasslist {
     #
     my %sections;
     my %fullnames;
+    my ($cdom,$cnum,$partlist);
+    if (($filterbysubmstatus) && ($submitonly ne 'all') && ($symb ne '')) {
+        $cdom = $env{"course.$env{'request.course.id'}.domain"};
+        $cnum = $env{"course.$env{'request.course.id'}.num"};
+        my $res_error;
+        ($partlist,my $handgrade,my $responseType) = &response_type($symb,\$res_error);
+    }
     foreach my $student (keys(%$classlist)) {
         my $end      = 
             $classlist->{$student}->[&Apache::loncoursedata::CL_END()];
@@ -526,7 +555,7 @@ sub getclasslist {
         my $group   = 
             $classlist->{$student}->[&Apache::loncoursedata::CL_GROUP()];
 	# filter students according to status selected
-	if ($filterlist && (!($stu_status =~ /Any/))) {
+	if ($filterbyaccstatus && (!($stu_status =~ /Any/))) {
 	    if (!($stu_status =~ $status)) {
 		delete($classlist->{$student});
 		next;
@@ -543,13 +572,58 @@ sub getclasslist {
     	            } 
 	        }
     	        if (($grp eq 'none') && !$group) {
-        	        $exclude = 0;
+        	    $exclude = 0;
         	}
 	    }
 	    if ($exclude) {
 	        delete($classlist->{$student});
+		next;
 	    }
 	}
+        if (($filterbysubmstatus) && ($submitonly ne 'all') && ($symb ne '')) {
+            my $udom =
+                $classlist->{$student}->[&Apache::loncoursedata::CL_SDOM()];
+            my $uname =
+                $classlist->{$student}->[&Apache::loncoursedata::CL_SNAME()];
+            if (($symb ne '') && ($udom ne '') && ($uname ne '')) {
+                if ($submitonly eq 'queued') {
+                    my %queue_status =
+                        &Apache::bridgetask::get_student_status($symb,$cdom,$cnum,
+                                                                $udom,$uname);
+                    if (!defined($queue_status{'gradingqueue'})) {
+                        delete($classlist->{$student});
+                        next;
+                    }
+                } else {
+                    my (%status) =&student_gradeStatus($symb,$udom,$uname,$partlist);
+                    my $submitted = 0;
+                    my $graded = 0;
+                    my $incorrect = 0;
+                    foreach (keys(%status)) {
+                        $submitted = 1 if ($status{$_} ne 'nothing');
+                        $graded = 1 if ($status{$_} =~ /^ungraded/);
+                        $incorrect = 1 if ($status{$_} =~ /^incorrect/);
+
+                        my ($foo,$partid,$foo1) = split(/\./,$_);
+                        if ($status{'resource.'.$partid.'.submitted_by'} ne '') {
+                            $submitted = 0;
+                        }
+                    }
+                    if (!$submitted && ($submitonly eq 'yes' ||
+                                        $submitonly eq 'incorrect' ||
+                                        $submitonly eq 'graded')) {
+                        delete($classlist->{$student});
+                        next;
+                    } elsif (!$graded && ($submitonly eq 'graded')) {
+                        delete($classlist->{$student});
+                        next;
+                    } elsif (!$incorrect && $submitonly eq 'incorrect') {
+                        delete($classlist->{$student});
+                        next;
+                    }
+                }
+            }
+        }
 	$section = ($section ne '' ? $section : 'none');
 	if (&canview($section)) {
 	    if (!@getsec || grep(/^\Q$section\E$/,@getsec)) {
@@ -564,7 +638,6 @@ sub getclasslist {
 	    delete($classlist->{$student});
 	}
     }
-    my %seen = ();
     my @sections = sort(keys(%sections));
     return ($classlist,\@sections,\%fullnames);
 }
@@ -836,6 +909,7 @@ sub verifyreceipt {
 sub listStudents {
     my ($request,$symb,$submitonly) = @_;
 
+    my $is_tool   = ($symb =~ /ext\.tool$/);
     my $cdom      = $env{"course.$env{'request.course.id'}.domain"};
     my $cnum      = $env{"course.$env{'request.course.id'}.num"};
     my $getsec    = $env{'form.section'} eq '' ? 'all' : $env{'form.section'};
@@ -848,10 +922,11 @@ sub listStudents {
     my $res_error;
     my ($partlist,$handgrade,$responseType) = &response_type($symb,\$res_error);
 
-    my %lt = &Apache::lonlocal::texthash (
+    my %js_lt = &Apache::lonlocal::texthash (
 		'multiple' => 'Please select a student or group of students before clicking on the Next button.',
 		'single'   => 'Please select the student before clicking on the Next button.',
 	     );
+    &js_escape(\%js_lt);
     $request->print(&Apache::lonhtmlcommon::scripttag(<<LISTJAVASCRIPT));
     function checkSelect(checkBox) {
 	var ctr=0;
@@ -862,12 +937,12 @@ sub listStudents {
 		    ctr++;
 		}
 	    }
-	    sense = '$lt{'multiple'}';
+	    sense = '$js_lt{'multiple'}';
 	} else {
 	    if (checkBox.checked) {
 		ctr = 1;
 	    }
-	    sense = '$lt{'single'}';
+	    sense = '$js_lt{'single'}';
 	}
 	if (ctr == 0) {
 	    alert(sense);
@@ -890,38 +965,66 @@ LISTJAVASCRIPT
 	"\n";
 	
     $gradeTable .= &Apache::lonhtmlcommon::start_pick_box();
-    $gradeTable .= &Apache::lonhtmlcommon::row_title(&mt('View Problem Text'))
-                  .'<label><input type="radio" name="vProb" value="no" checked="checked" /> '.&mt('no').' </label>'."\n"
-                  .'<label><input type="radio" name="vProb" value="yes" /> '.&mt('one student').' </label>'."\n"
-                  .'<label><input type="radio" name="vProb" value="all" /> '.&mt('all students').' </label><br />'."\n"
-                  .&Apache::lonhtmlcommon::row_closure();
-    $gradeTable .= &Apache::lonhtmlcommon::row_title(&mt('View Answer'))
-                  .'<label><input type="radio" name="vAns" value="no"  /> '.&mt('no').' </label>'."\n"
-                  .'<label><input type="radio" name="vAns" value="yes" /> '.&mt('one student').' </label>'."\n"
-                  .'<label><input type="radio" name="vAns" value="all" checked="checked" /> '.&mt('all students').' </label><br />'."\n"
-                  .&Apache::lonhtmlcommon::row_closure();
+    unless ($is_tool) {
+        $gradeTable .= &Apache::lonhtmlcommon::row_title(&mt('View Problem Text'))
+                      .'<label><input type="radio" name="vProb" value="no" checked="checked" /> '.&mt('no').' </label>'."\n"
+                      .'<label><input type="radio" name="vProb" value="yes" /> '.&mt('one student').' </label>'."\n"
+                      .'<label><input type="radio" name="vProb" value="all" /> '.&mt('all students').' </label><br />'."\n"
+                      .&Apache::lonhtmlcommon::row_closure();
+        $gradeTable .= &Apache::lonhtmlcommon::row_title(&mt('View Answer'))
+                      .'<label><input type="radio" name="vAns" value="no"  /> '.&mt('no').' </label>'."\n"
+                      .'<label><input type="radio" name="vAns" value="yes" /> '.&mt('one student').' </label>'."\n"
+                      .'<label><input type="radio" name="vAns" value="all" checked="checked" /> '.&mt('all students').' </label><br />'."\n"
+                      .&Apache::lonhtmlcommon::row_closure();
+    }
 
     my $submission_options;
     my $stu_status = join(':',&Apache::loncommon::get_env_multiple('form.Status'));
     my $saveStatus = $stu_status eq '' ? 'Active' : $stu_status;
     $env{'form.Status'} = $saveStatus;
+    my %optiontext;
+    if ($is_tool) {
+        %optiontext = &Apache::lonlocal::texthash (
+                          lastonly => 'last transaction',
+                          last     => 'last transaction with details',
+                          datesub  => 'all transactions',
+                          all      => 'all transactions with details',
+                      );
+    } else {
+        %optiontext = &Apache::lonlocal::texthash (
+                          lastonly => 'last submission',
+                          last     => 'last submission with details',
+                          datesub  => 'all submissions',
+                          all      => 'all submissions with details',
+                      );
+    }
     $submission_options.=
         '<span class="LC_nobreak">'.
         '<label><input type="radio" name="lastSub" value="lastonly" /> '.
-        &mt('last submission').' </label></span>'."\n".
+        $optiontext{'lastonly'}.' </label></span>'."\n".
         '<span class="LC_nobreak">'.
         '<label><input type="radio" name="lastSub" value="last" /> '.
-        &mt('last submission with details').' </label></span>'."\n".
+        $optiontext{'last'}.' </label></span>'."\n".
         '<span class="LC_nobreak">'.
         '<label><input type="radio" name="lastSub" value="datesub" checked="checked" /> '.
-        &mt('all submissions').'</label></span>'."\n".
+        $optiontext{'datesub'}.'</label></span>'."\n".
         '<span class="LC_nobreak">'.
         '<label><input type="radio" name="lastSub" value="all" /> '.
-        &mt('all submissions with details').'</label></span>';
-    $gradeTable .= &Apache::lonhtmlcommon::row_title(&mt('View Submissions'))
+        $optiontext{'all'}.'</label></span>';
+    my $viewtitle;
+    if ($is_tool) {
+        $viewtitle = &mt('View Transactions');
+    } else {
+        $viewtitle = &mt('View Submissions');
+    }
+    $gradeTable .= &Apache::lonhtmlcommon::row_title($viewtitle)
                   .$submission_options
                   .&Apache::lonhtmlcommon::row_closure();
 
+    my $closure;
+    if (($is_tool) && (exists($env{'form.Status'}))) {
+        $closure = 1;
+    }
     $gradeTable .= &Apache::lonhtmlcommon::row_title(&mt('Grading Increments'))
                   .'<select name="increment">'
                   .'<option value="1">'.&mt('Whole Points').'</option>'
@@ -929,7 +1032,7 @@ LISTJAVASCRIPT
                   .'<option value=".25">'.&mt('Quarter Points').'</option>'
                   .'<option value=".1">'.&mt('Tenths of a Point').'</option>'
                   .'</select>'
-                  .&Apache::lonhtmlcommon::row_closure();
+                  .&Apache::lonhtmlcommon::row_closure($closure);
 
     $gradeTable .= 
         &build_section_inputs().
@@ -940,19 +1043,30 @@ LISTJAVASCRIPT
     if (exists($env{'form.Status'})) {
 	$gradeTable .= '<input type="hidden" name="Status" value="'.$stu_status.'" />'."\n";
     } else {
+        if ($is_tool) {
+            $closure = 1;
+        }
         $gradeTable .= &Apache::lonhtmlcommon::row_title(&mt('Student Status'))
                       .&Apache::lonhtmlcommon::StatusOptions(
                            $saveStatus,undef,1,'javascript:reLoadList(this.form);')
-                      .&Apache::lonhtmlcommon::row_closure();
+                      .&Apache::lonhtmlcommon::row_closure($closure);
     }
 
-    $gradeTable .= &Apache::lonhtmlcommon::row_title(&mt('Check For Plagiarism'))
-                  .'<input type="checkbox" name="checkPlag" checked="checked" />'
-                  .&Apache::lonhtmlcommon::row_closure(1)
-                  .&Apache::lonhtmlcommon::end_pick_box();
-
+    unless ($is_tool) {
+        $closure = 1;
+        $gradeTable .= &Apache::lonhtmlcommon::row_title(&mt('Check For Plagiarism'))
+                      .'<input type="checkbox" name="checkPlag" checked="checked" />'
+                      .&Apache::lonhtmlcommon::row_closure($closure);
+    }
+    $gradeTable .= &Apache::lonhtmlcommon::end_pick_box();
+    my $regrademsg;
+    if ($is_tool) {
+        $regrademsg =&mt("To view/grade/regrade, click on the check box(es) next to the student's name(s). Then click on the Next button.");
+    } else {
+        $regrademsg = &mt("To view/grade/regrade a submission or a group of submissions, click on the check box(es) next to the student's name(s). Then click on the Next button.");
+    }
     $gradeTable .= '<p>'
-                  .&mt("To view/grade/regrade a submission or a group of submissions, click on the check box(es) next to the student's name(s). Then click on the Next button.")."\n"
+                  .$regrademsg."\n"
                   .'<input type="hidden" name="command" value="processGroup" />'
                   .'</p>';
 
@@ -1084,7 +1198,7 @@ LISTJAVASCRIPT
 	    if ($submitonly eq 'graded'   ) { $submissions = 'ungraded submissions'; }
 	    if ($submitonly eq 'queued'   ) { $submissions = 'queued submissions'; }
 	    $gradeTable='<br />&nbsp;<span class="LC_warning">'.
-		&mt('No '.$submissions.' found for this resource for any students. ([_1] students checked for '.$submissions.')',
+		&mt('No '.$submissions.' found for this resource for any students. ([quant,_1,student] checked for '.$submissions.')',
 		    $num_students).
 		'</span><br />';
 	}
@@ -1168,7 +1282,8 @@ sub processGroup {
 #--- Javascript to handle the submission page functionality ---
 sub sub_page_js {
     my $request = shift;
-	    my $alertmsg = &mt('A number equal or greater than 0 is expected. Entered value = ');
+    my $alertmsg = &mt('A number equal or greater than 0 is expected. Entered value = ');
+    &js_escape(\$alertmsg);
     $request->print(&Apache::lonhtmlcommon::scripttag(<<SUBJAVASCRIPT));
     function updateRadio(formname,id,weight) {
 	var gradeBox = formname["GD_BOX"+id];
@@ -1286,10 +1401,8 @@ sub sub_page_js {
 			    }
 			}
 		    }
-		    
 		}
 	    }
-	    
 	}
 	formname.submit();
     }
@@ -1415,10 +1528,21 @@ INNERJS
 
     my $docopen=&Apache::lonhtmlcommon::javascript_docopen();
     $docopen=~s/^document\.//;
-    my %lt = &Apache::lonlocal::texthash(
+    my %js_lt = &Apache::lonlocal::texthash(
                 keyw => 'Keywords list, separated by a space. Add/delete to list if desired.',
                 plse => 'Please select a word or group of words from document and then click this link.',
                 adds => 'Add selection to keyword list? Edit if desired.',
+                col1 => 'red',
+                col2 => 'green',
+                col3 => 'blue',
+                siz1 => 'normal',
+                siz2 => '+1',
+                siz3 => '+2',
+                sty1 => 'normal',
+                sty2 => 'italic',
+                sty3 => 'bold',
+             );
+    my %html_js_lt = &Apache::lonlocal::texthash(
                 comp => 'Compose Message for: ',
                 incl => 'Include',
                 type => 'Type',
@@ -1432,11 +1556,14 @@ INNERJS
                 font => 'Font Size',
                 fnst => 'Font Style',
              );
+    &js_escape(\%js_lt);
+    &html_escape(\%html_js_lt);
+    &js_escape(\%html_js_lt);
     $request->print(&Apache::lonhtmlcommon::scripttag(<<SUBJAVASCRIPT));
 
 //===================== Show list of keywords ====================
   function keywords(formname) {
-    var nret = prompt("$lt{'keyw'}",formname.keywords.value);
+    var nret = prompt("$js_lt{'keyw'}",formname.keywords.value);
     if (nret==null) return;
     formname.keywords.value = nret;
 
@@ -1463,10 +1590,10 @@ INNERJS
     else return;
     var cleantxt = txt.replace(new RegExp('([\\f\\n\\r\\t\\v ])+', 'g')," ");
     if (cleantxt=="") {
-	alert("$lt{'plse'}");
+	alert("$js_lt{'plse'}");
 	return;
     }
-    var nret = prompt("$lt{'adds'}",cleantxt);
+    var nret = prompt("$js_lt{'adds'}",cleantxt);
     if (nret==null) return;
     document.SCORE.keywords.value = document.SCORE.keywords.value+" "+nret;
     if (document.SCORE.keywords.value != "") {
@@ -1546,16 +1673,16 @@ INNERJS
 
     pDoc.write("<form action=\\"inactive\\" name=\\"msgcenter\\">");
     pDoc.write("<input value=\\""+usrctr+"\\" name=\\"usrctr\\" type=\\"hidden\\">");
-    pDoc.write("<h1>&nbsp;$lt{'comp'}\"+fullname+\"<\\/h1>");
+    pDoc.write("<h1>&nbsp;$html_js_lt{'comp'}\"+fullname+\"<\\/h1>");
 
     pDoc.write('<table style="border:1px solid black;"><tr>');
-    pDoc.write("<td><b>$lt{'incl'}<\\/b><\\/td><td><b>$lt{'type'}<\\/b><\\/td><td><b>$lt{'mesa'}<\\/td><\\/tr>");
+    pDoc.write("<td><b>$html_js_lt{'incl'}<\\/b><\\/td><td><b>$html_js_lt{'type'}<\\/b><\\/td><td><b>$html_js_lt{'mesa'}<\\/td><\\/tr>");
 }
     function displaySubject(msg,shwsel) {
     pDoc = pWin.document;
     pDoc.write("<tr>");
     pDoc.write("<td align=\\"center\\"><input name=\\"subchk\\" type=\\"checkbox\\"" +shwsel+"><\\/td>");
-    pDoc.write("<td>$lt{'subj'}<\\/td>");
+    pDoc.write("<td>$html_js_lt{'subj'}<\\/td>");
     pDoc.write("<td><input name=\\"msgsub\\" type=\\"text\\" value=\\""+msg+"\\"size=\\"40\\" maxlength=\\"80\\"><\\/td><\\/tr>");
 }
 
@@ -1571,7 +1698,7 @@ INNERJS
     pDoc = pWin.document;
     pDoc.write("<tr>");
     pDoc.write("<td align=\\"center\\"><input name=\\"newmsgchk\\" type=\\"checkbox\\"" +shwsel+"><\\/td>");
-    pDoc.write("<td align=\\"center\\">$lt{'new'}<\\/td>");
+    pDoc.write("<td align=\\"center\\">$html_js_lt{'new'}<\\/td>");
     pDoc.write("<td><textarea name=\\"newmsg\\" cols=\\"60\\" rows=\\"3\\" onchange=\\"javascript:this.form.newmsgchk.checked=true\\" >"+newmsg+"<\\/textarea><\\/td><\\/tr>");
 }
 
@@ -1579,8 +1706,8 @@ INNERJS
     pDoc = pWin.document;
     //pDoc.write("<\\/table>");
     pDoc.write("<\\/td><\\/tr><\\/table>&nbsp;");
-    pDoc.write("<input type=\\"button\\" value=\\"$lt{'save'}\\" onclick=\\"javascript:checkInput()\\">&nbsp;&nbsp;");
-    pDoc.write("<input type=\\"button\\" value=\\"$lt{'canc'}\\" onclick=\\"self.close()\\"><br /><br />");
+    pDoc.write("<input type=\\"button\\" value=\\"$html_js_lt{'save'}\\" onclick=\\"javascript:checkInput()\\">&nbsp;&nbsp;");
+    pDoc.write("<input type=\\"button\\" value=\\"$html_js_lt{'canc'}\\" onclick=\\"self.close()\\"><br /><br />");
     pDoc.write("<\\/form>");
     pDoc.write('$end_page_msg_central');
     pDoc.close();
@@ -1594,25 +1721,34 @@ INNERJS
     var redsel = "";
     var grnsel = "";
     var blusel = "";
-    if (kwclr=="red")   {var redsel="checked"};
-    if (kwclr=="green") {var grnsel="checked"};
-    if (kwclr=="blue")  {var blusel="checked"};
+    var txtcol1 = "$js_lt{'col1'}";
+    var txtcol2 = "$js_lt{'col2'}";
+    var txtcol3 = "$js_lt{'col3'}";
+    var txtsiz1 = "$js_lt{'siz1'}";
+    var txtsiz2 = "$js_lt{'siz2'}";
+    var txtsiz3 = "$js_lt{'siz3'}";
+    var txtsty1 = "$js_lt{'sty1'}";
+    var txtsty2 = "$js_lt{'sty2'}";
+    var txtsty3 = "$js_lt{'sty3'}";
+    if (kwclr=="red")   {var redsel="checked='checked'"};
+    if (kwclr=="green") {var grnsel="checked='checked'"};
+    if (kwclr=="blue")  {var blusel="checked='checked'"};
     var sznsel = "";
     var sz1sel = "";
     var sz2sel = "";
-    if (kwsize=="0")  {var sznsel="checked"};
-    if (kwsize=="+1") {var sz1sel="checked"};
-    if (kwsize=="+2") {var sz2sel="checked"};
+    if (kwsize=="0")  {var sznsel="checked='checked'"};
+    if (kwsize=="+1") {var sz1sel="checked='checked'"};
+    if (kwsize=="+2") {var sz2sel="checked='checked'"};
     var synsel = "";
     var syisel = "";
     var sybsel = "";
-    if (kwstyle=="")    {var synsel="checked"};
-    if (kwstyle=="<i>") {var syisel="checked"};
-    if (kwstyle=="<b>") {var sybsel="checked"};
+    if (kwstyle=="")    {var synsel="checked='checked'"};
+    if (kwstyle=="<i>") {var syisel="checked='checked'"};
+    if (kwstyle=="<b>") {var sybsel="checked='checked'"};
     highlightCentral();
-    highlightbody('red','red',redsel,'0','normal',sznsel,'','normal',synsel);
-    highlightbody('green','green',grnsel,'+1','+1',sz1sel,'<i>','italic',syisel);
-    highlightbody('blue','blue',blusel,'+2','+2',sz2sel,'<b>','bold',sybsel);
+    highlightbody('red',txtcol1,redsel,'0',txtsiz1,sznsel,'',txtsty1,synsel);
+    highlightbody('green',txtcol2,grnsel,'+1',txtsiz2,sz1sel,'<i>',txtsty2,syisel);
+    highlightbody('blue',txtcol3,blusel,'+2',txtsiz3,sz2sel,'<b>',txtsty3,sybsel);
     highlightend();
     return;
   }
@@ -1630,31 +1766,29 @@ INNERJS
     hDoc.$docopen;
     hDoc.write('$start_page_highlight_central');
     hDoc.write("<form action=\\"inactive\\" name=\\"hlCenter\\">");
-    hDoc.write("<h3><span class=\\"LC_info\\">&nbsp;$lt{'kehi'}<\\/span><\\/h3><br /><br />");
+    hDoc.write("<h1>$html_js_lt{'kehi'}<\\/h1>");
 
-    hDoc.write('<table border="0" width="100%"><tr><td bgcolor="#777777">');
-    hDoc.write('<table border="0" width="100%"><tr bgcolor="#DDFFFF">');
-    hDoc.write("<td><b>$lt{'txtc'}<\\/b><\\/td><td><b>$lt{'font'}<\\/b><\\/td><td><b>$lt{'fnst'}<\\/td><\\/tr>");
+    hDoc.write('<table border="0" width="100%"><tr style="background-color:#A1D676">');
+    hDoc.write("<th>$html_js_lt{'txtc'}<\\/th><th>$html_js_lt{'font'}<\\/th><th>$html_js_lt{'fnst'}<\\/th><\\/tr>");
   }
 
   function highlightbody(clrval,clrtxt,clrsel,szval,sztxt,szsel,syval,sytxt,sysel) { 
     var hDoc = hwdWin.document;
-    hDoc.write("<tr bgcolor=\\"#ffffdd\\">");
+    hDoc.write("<tr>");
     hDoc.write("<td align=\\"left\\">");
-    hDoc.write("<input name=\\"kwdclr\\" type=\\"radio\\" value=\\""+clrval+"\\" "+clrsel+">&nbsp;"+clrtxt+"<\\/td>");
+    hDoc.write("<input name=\\"kwdclr\\" type=\\"radio\\" value=\\""+clrval+"\\" "+clrsel+" \\/>&nbsp;"+clrtxt+"<\\/td>");
     hDoc.write("<td align=\\"left\\">");
-    hDoc.write("<input name=\\"kwdsize\\" type=\\"radio\\" value=\\""+szval+"\\" "+szsel+">&nbsp;"+sztxt+"<\\/td>");
+    hDoc.write("<input name=\\"kwdsize\\" type=\\"radio\\" value=\\""+szval+"\\" "+szsel+" \\/>&nbsp;"+sztxt+"<\\/td>");
     hDoc.write("<td align=\\"left\\">");
-    hDoc.write("<input name=\\"kwdstyle\\" type=\\"radio\\" value=\\""+syval+"\\" "+sysel+">&nbsp;"+sytxt+"<\\/td>");
+    hDoc.write("<input name=\\"kwdstyle\\" type=\\"radio\\" value=\\""+syval+"\\" "+sysel+" \\/>&nbsp;"+sytxt+"<\\/td>");
     hDoc.write("<\\/tr>");
   }
 
   function highlightend() { 
     var hDoc = hwdWin.document;
-    hDoc.write("<\\/table>");
-    hDoc.write("<\\/td><\\/tr><\\/table>&nbsp;");
-    hDoc.write("<input type=\\"button\\" value=\\"$lt{'save'}\\" onclick=\\"javascript:updateChoice(1)\\">&nbsp;&nbsp;");
-    hDoc.write("<input type=\\"button\\" value=\\"$lt{'canc'}\\" onclick=\\"self.close()\\"><br /><br />");
+    hDoc.write("<\\/table><br \\/>");
+    hDoc.write("<input type=\\"button\\" value=\\"$html_js_lt{'save'}\\" onclick=\\"javascript:updateChoice(1)\\" \\/>&nbsp;&nbsp;");
+    hDoc.write("<input type=\\"button\\" value=\\"$html_js_lt{'canc'}\\" onclick=\\"self.close()\\" \\/><br /><br />");
     hDoc.write("<\\/form>");
     hDoc.write('$end_page_highlight_central');
     hDoc.close();
@@ -1788,7 +1922,7 @@ sub handback_box {
 	    if ($file =~ /\/portfolio\//) {
                 $file_counter++;
     	        my ($file_path, $file_disp) = ($file =~ m|(.+/)(.+)$|);
-    	        my ($name,$version,$ext) = &file_name_version_ext($file_disp);
+    	        my ($name,$version,$ext) = &Apache::lonnet::file_name_version_ext($file_disp);
     	        $file_disp = "$name.$ext";
     	        $file = $file_path.$file_disp;
     	        $result.=&mt('Return commented version of [_1] to student.',
@@ -1871,7 +2005,6 @@ sub show_problem {
 sub files_exist {
     my ($r, $symb) = @_;
     my @students = &Apache::loncommon::get_env_multiple('form.stuinfo');
-
     foreach my $student (@students) {
         my ($uname,$udom,$fullname) = split(/:/,$student);
         my %record = &Apache::lonnet::restore($symb,$env{'request.course.id'},
@@ -1894,7 +2027,6 @@ sub download_all_link {
        $r->print(&mt('There are currently no submitted documents.'));
        return;
     }
-
     my $all_students = 
 	join("\n", &Apache::loncommon::get_env_multiple('form.stuinfo'));
 
@@ -1914,7 +2046,55 @@ sub submit_download_link {
     my ($request,$symb) = @_;
     if (!$symb) { return ''; }
 #FIXME: Figure out which type of problem this is and provide appropriate download
-    &download_all_link($request,$symb);
+    my $res_error;
+    my ($partlist,$handgrade,$responseType) = &response_type($symb,$res_error);
+    if (ref($res_error)) {
+        if ($$res_error) {
+            $request->print(&mt('An error occurred retrieving response types'));
+            return;
+        }
+    }
+    my ($numupload,$numessay) = (0,0);
+    if (ref($responseType) eq 'HASH') {
+        foreach my $part (sort(keys(%$responseType))) {
+            foreach my $id (sort(keys(%{ $responseType->{$part} }))) {
+                my $responsetype = $responseType->{$part}->{$id};
+                if ($responsetype eq 'essay') {
+                    my $uploadedfiletypes =
+                        &Apache::lonnet::EXT("resource.$part".'_'."$id.uploadedfiletypes",$symb);
+                    if ($uploadedfiletypes) {
+                        $numupload++;
+                    } else {
+                        $numessay++;
+                    }
+                }
+            }
+        }
+    }
+    if (($numupload) || ($numessay)) {
+        my $submitonly= $env{'form.submitonly'} eq '' ? 'all' : $env{'form.submitonly'};
+        my $getsec    = $env{'form.section'} eq '' ? 'all' : $env{'form.section'};
+        my $getgroup  = $env{'form.group'} eq '' ? 'all' : $env{'form.group'};
+        (undef,undef,my $fullname) = &getclasslist($getsec,1,$getgroup,$symb,$submitonly,1);
+        if (ref($fullname) eq 'HASH') {
+            my @students = map { $_.':'.$fullname->{$_} } (keys(%{$fullname}));
+            if (@students) {
+                @{$env{'form.stuinfo'}} = @students;
+                if ($numupload) {
+                    &download_all_link($request,$symb);
+                }
+# FIXME Need to provide a mechanism to download essays, i.e., if $numessay > 0
+# Needs to omit user's identity if resource instance is for an anonymous survey.
+            } else {
+                $request->print(&mt('No students match the criteria you selected'));
+            }
+        } else {
+            $request->print(&mt('Could not retrieve student information'));
+        }
+    } else {
+        $request->print(&mt('No essayresponse items found'));
+    }
+    return;
 }
 
 sub build_section_inputs {
@@ -1940,17 +2120,24 @@ sub submission {
 
     my $probtitle=&Apache::lonnet::gettitle($symb); 
     if ($symb eq '') { $request->print("Unable to handle ambiguous references:."); return ''; }
+    my $is_tool = ($symb =~ /ext\.tool$/);
+    my ($essayurl,%coursedesc_by_cid);
 
     if (!&canview($usec)) {
-	$request->print('<span class="LC_warning">Unable to view requested student.('.
-			$uname.':'.$udom.' in section '.$usec.' in course id '.
-			$env{'request.course.id'}.')</span>');
+        $request->print(
+            '<span class="LC_warning">'.
+            &mt('Unable to view requested student.').
+            ' '.&mt('([_1] in section [_2] in course id [_3])',
+                        $uname.':'.$udom,$usec,$env{'request.course.id'}).
+            '</span>');
 	return;
     }
 
     if (!$env{'form.lastSub'}) { $env{'form.lastSub'} = 'datesub'; }
-    if (!$env{'form.vProb'}) { $env{'form.vProb'} = 'yes'; }
-    if (!$env{'form.vAns'}) { $env{'form.vAns'} = 'yes'; }
+    unless ($is_tool) { 
+        if (!$env{'form.vProb'}) { $env{'form.vProb'} = 'yes'; }
+        if (!$env{'form.vAns'}) { $env{'form.vAns'} = 'yes'; }
+    }
     my $last = ($env{'form.lastSub'} eq 'last' ? 'last' : '');
     my $checkIcon = '<img alt="'.&mt('Check Mark').
 	'" src="'.$request->dir_config('lonIconsURL').
@@ -1976,7 +2163,7 @@ sub submission {
 	    $request->print(&show_problem($request,$symb,$uname,$udom,0,1,$mode));
 	}
 
-	# kwclr is the only variable that is guaranteed to be non blank 
+	# kwclr is the only variable that is guaranteed not to be blank 
         # if this subroutine has been called once.
 	my %keyhash = ();
 #	if ($env{'form.kwclr'} eq '' && $env{'form.handgrade'} eq 'yes') {
@@ -2038,9 +2225,10 @@ sub submission {
 	$request->print($prnmsg);
 
 #	if ($env{'form.handgrade'} eq 'yes') {
-        if (1) {
+        unless ($is_tool) {
 
             my %lt = &Apache::lonlocal::texthash(
+                          keyh => 'Keyword Highlighting for Essays',
                           keyw => 'Keyword Options',
                           list => 'List',
                           past => 'Paste Selection to List',
@@ -2049,21 +2237,39 @@ sub submission {
 #
 # Print out the keyword options line
 #
-	    $request->print(<<KEYWORDS);
-<br /><b>$lt{'keyw'}:</b>&nbsp;
-<a href="javascript:keywords(document.SCORE);" target="_self">$lt{'list'}</a>&nbsp; &nbsp;
-<a href="#" onmousedown="javascript:getSel(); return false"
- class="page">$lt{'past'}</a>&nbsp; &nbsp;
-<a href="javascript:kwhighlight();" target="_self">$lt{'high'}</a><br /><br />
-KEYWORDS
+	    $request->print(
+                '<div class="LC_columnSection">'
+               .'<fieldset><legend>'.$lt{'keyh'}.'</legend>'
+               .&Apache::lonhtmlcommon::funclist_from_array(
+                    ['<a href="javascript:keywords(document.SCORE);" target="_self">'.$lt{'list'}.'</a>',
+                     '<a href="#" onmousedown="javascript:getSel(); return false"
+ class="page">'.$lt{'past'}.'</a>',
+                     '<a href="javascript:kwhighlight();" target="_self">'.$lt{'high'}.'</a>'],
+                    {legend => $lt{'keyw'}})
+               .'</fieldset></div>'
+            );
+
 #
 # Load the other essays for similarity check
 #
-            my (undef,undef,$essayurl) = &Apache::lonnet::decode_symb($symb);
-	    my ($adom,$aname,$apath)=($essayurl=~/^($LONCAPA::domain_re)\/($LONCAPA::username_re)\/(.*)$/);
-	    $apath=&escape($apath);
-	    $apath=~s/\W/\_/gs;
-            &init_old_essays($symb,$apath,$adom,$aname);
+            (undef,undef,$essayurl) = &Apache::lonnet::decode_symb($symb);
+            if ($essayurl eq 'lib/templates/simpleproblem.problem') {
+                my $cdom = $env{'course.'.$env{'request.course.id'}.'.domain'};
+                my $cnum = $env{'course.'.$env{'request.course.id'}.'.num'};
+                if ($cdom ne '' && $cnum ne '') {
+                    my ($map,$id,$res) = &Apache::lonnet::decode_symb($symb);
+                    if ($map =~ m{^\Quploaded/$cdom/$cnum/\E(default(?:|_\d+)\.(?:sequence|page))$}) {
+                        my $apath = $1.'_'.$id;
+                        $apath=~s/\W/\_/gs;
+                        &init_old_essays($symb,$apath,$cdom,$cnum);
+                    }
+                }
+            } else {
+	        my ($adom,$aname,$apath)=($essayurl=~/^($LONCAPA::domain_re)\/($LONCAPA::username_re)\/(.*)$/);
+	        $apath=&escape($apath);
+	        $apath=~s/\W/\_/gs;
+                &init_old_essays($symb,$apath,$adom,$aname);
+            }
         }
     }
 
@@ -2080,7 +2286,7 @@ KEYWORDS
     if ($perm{'vgr'}) {
         $request->print(
             &Apache::loncommon::track_student_link(
-                &mt('View recent activity'),
+                'View recent activity',
                 $uname,$udom,'check')
            .' '
         );
@@ -2117,12 +2323,16 @@ KEYWORDS
     # Display student info
     $request->print(($counter == 0 ? '' : '<br />'));
 
+    my $boxtitle = &mt('Submissions');
+    if ($is_tool) {
+        $boxtitle = &mt('Transactions')
+    }
     my $result='<div class="LC_Box">'
-              .'<h3 class="LC_hcell">'.&mt('Submissions').'</h3>';
+              .'<h3 class="LC_hcell">'.$boxtitle.'</h3>';
     $result.='<input type="hidden" name="name'.$counter.
              '" value="'.$env{'form.fullname'}.'" />'."\n";
 #    if ($env{'form.handgrade'} eq 'no') {
-    if (1) {
+    unless ($is_tool) {
         $result.='<p class="LC_info">'
                 .&mt('Part(s) graded correct by the computer is marked with a [_1] symbol.',$checkIcon)
                 ."</p>\n";
@@ -2132,156 +2342,199 @@ KEYWORDS
     my $fullname;
     my $col_fullnames = [];
 #    if ($env{'form.handgrade'} eq 'yes') {
-    if (1) {
+    unless ($is_tool) {
 	(my $sub_result,$fullname,$col_fullnames)=
 	    &check_collaborators($symb,$uname,$udom,\%record,$handgrade,
 				 $counter);
 	$result.=$sub_result;
     }
     $request->print($result."\n");
-
+    
     # print student answer/submission
     # Options are (1) Handgraded submission only
     #             (2) Last submission, includes submission that is not handgraded 
     #                  (for multi-response type part)
     #             (3) Last submission plus the parts info
     #             (4) The whole record for this student
-    if ($env{'form.lastSub'} =~ /^(lastonly|hdgrade)$/) {
-	my ($string,$timestamp)= &get_last_submission(\%record);
+    
+    my ($string,$timestamp)= &get_last_submission(\%record,$is_tool);
 	
-	my $lastsubonly;
+    my $lastsubonly;
 
-        if ($$timestamp eq '') {
-            $lastsubonly.='<div class="LC_grade_submissions_body">'.$$string[0].'</div>'; 
-        } else {
-            $lastsubonly =
-                '<div class="LC_grade_submissions_body">'
-               .'<b>'.&mt('Date Submitted:').'</b> '.$$timestamp."\n";
-
-	    my %seenparts;
-	    my @part_response_id = &flatten_responseType($responseType);
-	    foreach my $part (@part_response_id) {
-		next if ($env{'form.lastSub'} eq 'hdgrade' 
+    if ($$timestamp eq '') {
+        $lastsubonly.='<div class="LC_grade_submissions_body">'.$$string[0].'</div>'; 
+    } elsif ($is_tool) {
+        $lastsubonly =
+            '<div class="LC_grade_submissions_body">'
+           .'<b>'.&mt('Date Grade Passed Back:').'</b> '.$$timestamp."</div>\n";
+    } else {
+        $lastsubonly =
+            '<div class="LC_grade_submissions_body">'
+           .'<b>'.&mt('Date Submitted:').'</b> '.$$timestamp."\n";
+
+	my %seenparts;
+	my @part_response_id = &flatten_responseType($responseType);
+	foreach my $part (@part_response_id) {
+	    next if ($env{'form.lastSub'} eq 'hdgrade' 
 			 && $$handgrade{$$part[0].'_'.$$part[1]} ne 'yes');
 
-		my ($partid,$respid) = @{ $part };
-		my $display_part=&get_display_part($partid,$symb);
-		if ($env{"form.$uname:$udom:$partid:submitted_by"}) {
-		    if (exists($seenparts{$partid})) { next; }
-		    $seenparts{$partid}=1;
-                    $request->print(
-                        '<b>'.&mt('Part: [_1]',$display_part).'</b>'.
-                        ' <b>'.&mt('Collaborative submission by: [_1]',
-                                   '<a href="javascript:viewSubmitter(\''.
-                                   $env{"form.$uname:$udom:$partid:submitted_by"}.
-                                   '\');" target="_self">'.
-                                   $$fullname{$env{"form.$uname:$udom:$partid:submitted_by"}}.'</a>').
-                        '<br />');
-		    next;
-		}
-		my $responsetype = $responseType->{$partid}->{$respid};
-		if (!exists($record{"resource.$partid.$respid.submission"})) {
-                    $lastsubonly.="\n".'<div class="LC_grade_submission_part">'.
-                        '<b>'.&mt('Part: [_1]',$display_part).'</b>'.
-                        ' <span class="LC_internal_info">'.
-                        '('.&mt('Response ID: [_1]',$respid).')'.
-                        '</span>&nbsp; &nbsp;'.
-			'<span class="LC_warning">'.&mt('Nothing submitted - no attempts.').'</span><br /><br /></div>';
-		    next;
-		}
-		foreach my $submission (@$string) {
-		    my ($partid,$respid) = ($submission =~ /^resource\.([^\.]*)\.([^\.]*)\.submission/);
-		    if (join('_',@{$part}) ne ($partid.'_'.$respid)) { next; }
-		    my ($ressub,$hide,$subval) = split(/:/,$submission,3);
-		    # Similarity check
-		    my $similar='';
-                    my ($type,$trial,$rndseed);
-                    if ($hide eq 'rand') {
-                        $type = 'randomizetry';
-                        $trial = $record{"resource.$partid.tries"};
-                        $rndseed = $record{"resource.$partid.rndseed"};
-                    }
-		    if($env{'form.checkPlag'}){
-			my ($oname,$odom,$ocrsid,$oessay,$osim)=
-			    &most_similar($uname,$udom,$symb,$subval);
-			if ($osim) {
-			    $osim=int($osim*100.0);
-			    my %old_course_desc = 
-				&Apache::lonnet::coursedescription($ocrsid,
-								   {'one_time' => 1});
-
-                            if ($hide eq 'anon') {
-                                $similar='<hr /><span class="LC_warning">'.&mt("Essay was found to be similar to another essay submitted for this assignment.").'<br />'.
-                                         &mt('As the current submission is for an anonymous survey, no other details are available.').'</span><hr />';
-                            } else {
-			        $similar="<hr /><h3><span class=\"LC_warning\">".
-				    &mt('Essay is [_1]% similar to an essay by [_2] in course [_3] (course id [_4]:[_5])',
-				        $osim,
-				        &Apache::loncommon::plainname($oname,$odom).' ('.$oname.':'.$odom.')',
-				        $old_course_desc{'description'},
-				        $old_course_desc{'num'},
-				        $old_course_desc{'domain'}).
-				    '</span></h3><blockquote><i>'.
-				    &keywords_highlight($oessay).
-				    '</i></blockquote><hr />';
-                            }
-			}
-		    }
-		    my $order=&get_order($partid,$respid,$symb,$uname,$udom,
-                                         undef,$type,$trial,$rndseed);
-		    if ($env{'form.lastSub'} eq 'lastonly' || 
-			($env{'form.lastSub'} eq 'hdgrade' && 
-			 $$handgrade{$$part[0].'_'.$$part[1]} eq 'yes')) {
-			my $display_part=&get_display_part($partid,$symb);
-                        $lastsubonly.='<div class="LC_grade_submission_part">'.
-                            '<b>'.&mt('Part: [_1]',$display_part).'</b>'.
-                            ' <span class="LC_internal_info">'.
-                            '('.&mt('Response ID: [_1]',$respid).')'.
-                            '</span>&nbsp; &nbsp;';
-			my $files=&get_submitted_files($udom,$uname,$partid,$respid,\%record);
-
-			if (@$files) {
-                            if ($hide eq 'anon') {
-                                $lastsubonly.='<br />'.&mt('[quant,_1,file] uploaded to this anonymous survey',scalar(@{$files}));
+	    my ($partid,$respid) = @{ $part };
+	    my $display_part=&get_display_part($partid,$symb);
+	    if ($env{"form.$uname:$udom:$partid:submitted_by"}) {
+		if (exists($seenparts{$partid})) { next; }
+		$seenparts{$partid}=1;
+                $request->print(
+                    '<b>'.&mt('Part: [_1]',$display_part).'</b>'.
+                    ' <b>'.&mt('Collaborative submission by: [_1]',
+                               '<a href="javascript:viewSubmitter(\''.
+                               $env{"form.$uname:$udom:$partid:submitted_by"}.
+                               '\');" target="_self">'.
+                               $$fullname{$env{"form.$uname:$udom:$partid:submitted_by"}}.'</a>').
+                    '<br />');
+		next;
+		}
+	    my $responsetype = $responseType->{$partid}->{$respid};
+	    if (!exists($record{"resource.$partid.$respid.submission"})) {
+                $lastsubonly.="\n".'<div class="LC_grade_submission_part">'.
+                    '<b>'.&mt('Part: [_1]',$display_part).'</b>'.
+                    ' <span class="LC_internal_info">'.
+                    '('.&mt('Response ID: [_1]',$respid).')'.
+                    '</span>&nbsp; &nbsp;'.
+	       	    '<span class="LC_warning">'.&mt('Nothing submitted - no attempts.').'</span><br /><br /></div>';
+		next;
+	    }
+	    foreach my $submission (@$string) {
+		my ($partid,$respid) = ($submission =~ /^resource\.([^\.]*)\.([^\.]*)\.submission/);
+		if (join('_',@{$part}) ne ($partid.'_'.$respid)) { next; }
+		my ($ressub,$hide,$draft,$subval) = split(/:/,$submission,4);
+		# Similarity check
+                my $similar='';
+                my ($type,$trial,$rndseed);
+                if ($hide eq 'rand') {
+                    $type = 'randomizetry';
+                    $trial = $record{"resource.$partid.tries"};
+                    $rndseed = $record{"resource.$partid.rndseed"};
+                }
+	        if ($env{'form.checkPlag'}) {
+    		    my ($oname,$odom,$ocrsid,$oessay,$osim)=
+		        &most_similar($uname,$udom,$symb,$subval);
+		    if ($osim) {
+			$osim=int($osim*100.0);
+                        if ($hide eq 'anon') {
+                            $similar='<hr /><span class="LC_warning">'.&mt("Essay was found to be similar to another essay submitted for this assignment.").'<br />'.
+                                     &mt('As the current submission is for an anonymous survey, no other details are available.').'</span><hr />';
+                        } else {
+			    $similar='<hr />';
+                            if ($essayurl eq 'lib/templates/simpleproblem.problem') {
+                                $similar .= '<h3><span class="LC_warning">'.
+                                            &mt('Essay is [_1]% similar to an essay by [_2]',
+                                                $osim,
+                                                &Apache::loncommon::plainname($oname,$odom).' ('.$oname.':'.$odom.')').
+                                            '</span></h3>';
                             } else {
-                                $lastsubonly.='<br /><br />'.'<b>'.&mt('Submitted Files:').'</b>'
-                                            .'<br /><span class="LC_warning">';
-                                if(@$files == 1) {
-                                    $lastsubonly .= &mt('Like all files provided by users, this file may contain viruses!');
+                                my %old_course_desc;
+                                if ($ocrsid ne '') {
+                                    if (ref($coursedesc_by_cid{$ocrsid}) eq 'HASH') {
+                                        %old_course_desc = %{$coursedesc_by_cid{$ocrsid}};
+                                    } else {
+                                        my $args;
+                                        if ($ocrsid ne $env{'request.course.id'}) {
+                                            $args = {'one_time' => 1};
+                                        }
+                                        %old_course_desc =
+                                            &Apache::lonnet::coursedescription($ocrsid,$args);
+                                        $coursedesc_by_cid{$ocrsid} = \%old_course_desc;
+                                    }
+                                    $similar .=
+                                        '<h3><span class="LC_warning">'.
+                                        &mt('Essay is [_1]% similar to an essay by [_2] in course [_3] (course id [_4]:[_5])',
+                                            $osim,
+                                            &Apache::loncommon::plainname($oname,$odom).' ('.$oname.':'.$odom.')',
+                                            $old_course_desc{'description'},
+                                            $old_course_desc{'num'},
+                                            $old_course_desc{'domain'}).
+                                        '</span></h3>';
                                 } else {
-                                    $lastsubonly .= &mt('Like all files provided by users, these files may contain viruses!');
-                                }
-                                $lastsubonly .= '</span>';                         
-                                foreach my $file (@$files) {
-                                    &Apache::lonnet::allowuploaded('/adm/grades',$file);
-                                    $lastsubonly.='<br /><a href="'.$file.'?rawmode=1" target="lonGRDs"><img src="'.&Apache::loncommon::icon($file).'" border="0" alt="" /> '.$file.'</a>';
+                                    $similar .=
+                                        '<h3><span class="LC_warning">'.
+                                        &mt('Essay is [_1]% similar to an essay by [_2] in an unknown course',
+                                            $osim,
+                                            &Apache::loncommon::plainname($oname,$odom).' ('.$oname.':'.$odom.')').
+                                        '</span></h3>';
                                 }
                             }
-			    $lastsubonly.='<br />';
-			}
+                            $similar .= '<blockquote><i>'.
+                                        &keywords_highlight($oessay).
+                                        '</i></blockquote><hr />';
+                        }
+	            }
+		}
+		my $order=&get_order($partid,$respid,$symb,$uname,$udom,
+                                     undef,$type,$trial,$rndseed);
+                if ($env{'form.lastSub'} eq 'lastonly' || $env{'form.lastSub'} eq 'datesub' || $env{'form.lastSub'} =~ /^(last|all)$/ || ($env{'form.lastSub'} eq 'hdgrade' && 
+			 $$handgrade{$$part[0].'_'.$$part[1]} eq 'yes')) {
+		    my $display_part=&get_display_part($partid,$symb);
+                    $lastsubonly.='<div class="LC_grade_submission_part">'.
+                        '<b>'.&mt('Part: [_1]',$display_part).'</b>'.
+                        ' <span class="LC_internal_info">'.
+                        '('.&mt('Response ID: [_1]',$respid).')'.
+                        '</span>&nbsp; &nbsp;';
+		    my $files=&get_submitted_files($udom,$uname,$partid,$respid,\%record);
+                        
+		    if (@$files) {
                         if ($hide eq 'anon') {
-                            $lastsubonly.='<br /><b>'.&mt('Anonymous Survey').'</b>'; 
+                            $lastsubonly.='<br />'.&mt('[quant,_1,file] uploaded to this anonymous survey',scalar(@{$files}));
                         } else {
-			    $lastsubonly.='<br /><b>'.&mt('Submitted Answer:').' </b>'.
-			        &cleanRecord($subval,$responsetype,$symb,$partid,
-					     $respid,\%record,$order,undef,$uname,$udom,$type,$trial,$rndseed);
+                            $lastsubonly.='<br /><br />'.'<b>'.&mt('Submitted Files:').'</b>'
+                                        .'<br /><span class="LC_warning">';
+                            if(@$files == 1) {
+                                $lastsubonly .= &mt('Like all files provided by users, this file may contain viruses!');
+                            } else {
+                                $lastsubonly .= &mt('Like all files provided by users, these files may contain viruses!');
+                            }
+                            $lastsubonly .= '</span>';                         
+                            foreach my $file (@$files) {
+                                &Apache::lonnet::allowuploaded('/adm/grades',$file);
+                                $lastsubonly.='<br /><a href="'.$file.'?rawmode=1" target="lonGRDs"><img src="'.&Apache::loncommon::icon($file).'" border="0" alt="" /> '.$file.'</a>';
+                            }
                         }
-			if ($similar) {$lastsubonly.="<br /><br />$similar\n";}
-			$lastsubonly.='</div>';
-		    }
+			$lastsubonly.='<br />';
+                    }
+                    if ($hide eq 'anon') {
+                        $lastsubonly.='<br /><b>'.&mt('Anonymous Survey').'</b>'; 
+                    } else {
+             	        $lastsubonly.='<br /><b>'.&mt('Submitted Answer:').' </b>';
+                        if ($draft) {
+                            $lastsubonly.= ' <span class="LC_warning">'.&mt('Draft Copy').'</span>';
+                        }
+                        $subval =
+			    &cleanRecord($subval,$responsetype,$symb,$partid,
+					 $respid,\%record,$order,undef,$uname,$udom,$type,$trial,$rndseed);
+                        if ($responsetype eq 'essay') {
+                            $subval =~ s{\n}{<br />}g;
+                        }
+                        $lastsubonly.=$subval."\n";
+                    }
+	            if ($similar) {$lastsubonly.="<br /><br />$similar\n";}
+		    $lastsubonly.='</div>';
 		}
-	    }
-	    $lastsubonly.='</div>'."\n"; # End: LC_grade_submissions_body
+            }
 	}
-	$request->print($lastsubonly);
-   } elsif ($env{'form.lastSub'} eq 'datesub') {
+	$lastsubonly.='</div>'."\n"; # End: LC_grade_submissions_body
+    }
+    $request->print($lastsubonly);
+    if ($env{'form.lastSub'} eq 'datesub') {
         my ($parts,$handgrade,$responseType) = &response_type($symb,\$res_error);
 	$request->print(&displaySubByDates($symb,\%record,$parts,$responseType,$checkIcon,$uname,$udom));
-    } elsif ($env{'form.lastSub'} =~ /^(last|all)$/) {
-	$request->print(&Apache::loncommon::get_previous_attempt($symb,$uname,$udom,
+  
+    } 
+    if ($env{'form.lastSub'} =~ /^(last|all)$/) {
+        my $identifier = (&canmodify($usec)? $counter : '');
+        $request->print(&Apache::loncommon::get_previous_attempt($symb,$uname,$udom,
 								 $env{'request.course.id'},
 								 $last,'.submission',
-								 'Apache::grades::keywords_highlight'));
+								 'Apache::grades::keywords_highlight',
+                                                                 $usec,$identifier));
     }
     $request->print('<input type="hidden" name="unamedom'.$counter.'" value="'.$uname.':'
 	.$udom.'" />'."\n");
@@ -2324,7 +2577,12 @@ KEYWORDS
     my %seen = ();
     my @partlist;
     my @gradePartRespid;
-    my @part_response_id = &flatten_responseType($responseType);
+    my @part_response_id;
+    if ($is_tool) {
+        @part_response_id = ([0,'']);
+    } else {
+        @part_response_id = &flatten_responseType($responseType);
+    }
     $request->print(
         '<div class="LC_Box">'
        .'<h3 class="LC_hcell">'.&mt('Assign Grades').'</h3>'
@@ -2450,7 +2708,7 @@ sub check_collaborators {
 
 #--- Retrieve the last submission for all the parts
 sub get_last_submission {
-    my ($returnhash)=@_;
+    my ($returnhash,$is_tool)=@_;
     my (@string,$timestamp,%lasthidden);
     if ($$returnhash{'version'}) {
 	my %lasthash=();
@@ -2500,7 +2758,7 @@ sub get_last_submission {
             }
             unless ($hide) {
                 if (@randomize) {
-                    foreach my $id (@hidden) {
+                    foreach my $id (@randomize) {
                         if ($key =~ /^\Q$id\E/) {
                             $hide = 'rand';
                             last;
@@ -2509,14 +2767,21 @@ sub get_last_submission {
                 }
             }
 	    my ($partid,$foo) = split(/submission$/,$key);
-	    my $draft  = $lasthash{$partid.'awarddetail'} eq 'DRAFT' ?
-		'<span class="LC_warning">Draft Copy</span> ' : '';
-	    push(@string, join(':', $key, $hide, $draft.$lasthash{$key}));
+	    my $draft  = $lasthash{$partid.'awarddetail'} eq 'DRAFT' ? 1 : 0;
+            push(@string, join(':', $key, $hide, $draft, (
+                ref($lasthash{$key}) eq 'ARRAY' ?
+                    join(',', @{$lasthash{$key}}) : $lasthash{$key}) ));
 	}
     }
     if (!@string) {
+        my $msg;
+        if ($is_tool) {
+            $msg = &mt('No grade passed back.');
+        } else {
+            $msg = &mt('Nothing submitted - no attempts.');
+        }
 	$string[0] =
-	    '<span class="LC_warning">'.&mt('Nothing submitted - no attempts.').'</span>';
+	    '<span class="LC_warning">'.$msg.'</span>';
     }
     return (\@string,\$timestamp);
 }
@@ -2539,16 +2804,21 @@ sub keywords_highlight {
 sub show_previous_task_version {
     my ($request,$symb) = @_;
     if ($symb eq '') {
-        $request->print("Unable to handle ambiguous references.");
-
+        $request->print(
+            '<span class="LC_error">'.
+            &mt('Unable to handle ambiguous references.').
+            '</span>');
         return '';
     }
     my ($uname,$udom) = ($env{'form.student'},$env{'form.userdom'});
     my $usec = &Apache::lonnet::getsection($udom,$uname,$env{'request.course.id'});
     if (!&canview($usec)) {
-        $request->print('<span class="LC_warning">Unable to view previous version for requested student.('.
-                        $uname.':'.$udom.' in section '.$usec.' in course id '.
-                        $env{'request.course.id'}.')</span>');
+        $request->print(
+            '<span class="LC_warning">'.
+            &mt('Unable to view previous version for requested student.').
+            ' '.&mt('([_1] in section [_2] in course id [_3])',
+                    $uname.':'.$udom,$usec,$env{'request.course.id'}).
+            '</span>');
         return;
     }
     my $mode = 'both';
@@ -2725,16 +2995,26 @@ sub processHandGrade {
 	my $ctr = 0;
 	while ($ctr < $ngrade) {
 	    my ($uname,$udom) = split(/:/,$env{'form.unamedom'.$ctr});
-	    my ($errorflag,$pts,$wgt) = &saveHandGrade($request,$symb,$uname,$udom,$ctr);
+	    my ($errorflag,$pts,$wgt,$numhidden) = 
+                &saveHandGrade($request,$symb,$uname,$udom,$ctr);
 	    if ($errorflag eq 'no_score') {
 		$ctr++;
 		next;
 	    }
 	    if ($errorflag eq 'not_allowed') {
-		$request->print("<span class=\"LC_warning\">Not allowed to modify grades for $uname:$udom</span>");
+		$request->print(
+                    '<span class="LC_error">'
+                   .&mt('Not allowed to modify grades for [_1]',"$uname:$udom")
+                   .'</span>');
 		$ctr++;
 		next;
 	    }
+            if ($numhidden) {
+                $request->print(
+                    '<span class="LC_info">'
+                   .&mt('For [_1]: [quant,_2,transaction] hidden',"$uname:$udom",$numhidden)
+                   .'</span><br />');
+            }
 	    my $includemsg = $env{'form.includemsg'.$ctr};
 	    my ($subject,$message,$msgstatus) = ('','','');
 	    my $restitle = &Apache::lonnet::gettitle($symb);
@@ -2956,9 +3236,14 @@ sub saveHandGrade {
     my %record = &Apache::lonnet::restore($symb,$env{'request.course.id'},$domain,$stuname);
     my @parts_graded;
     my %newrecord  = ();
-    my ($pts,$wgt) = ('','');
+    my ($pts,$wgt,$totchg) = ('','',0);
     my %aggregate = ();
     my $aggregateflag = 0;
+    if ($env{'form.HIDE'.$newflg}) {
+        my ($version,$parts) = split(/:/,$env{'form.HIDE'.$newflg},2);
+        my $numchgs = &makehidden($version,$parts,\%record,$symb,$domain,$stuname,1);
+        $totchg += $numchgs;
+    }
     my @parts = split(/:/,$env{'form.partlist'.$newflg});
     foreach my $new_part (@parts) {
 	#collaborator ($submi may vary for different parts
@@ -3061,7 +3346,37 @@ sub saveHandGrade {
         &Apache::lonnet::cinc('nohist_resourcetracker',\%aggregate,
 			      $cdom,$cnum);
     }
-    return ('',$pts,$wgt);
+    return ('',$pts,$wgt,$totchg);
+}
+
+sub makehidden {
+    my ($version,$parts,$record,$symb,$domain,$stuname,$tolog) = @_;
+    return unless (ref($record) eq 'HASH');
+    my %modified;
+    my $numchanged = 0;
+    if (exists($record->{$version.':keys'})) {
+        my $partsregexp = $parts;
+        $partsregexp =~ s/,/|/g;
+        foreach my $key (split(/\:/,$record->{$version.':keys'})) {
+            if ($key =~ /^resource\.(?:$partsregexp)\.([^\.]+)$/) {
+                 my $item = $1;
+                 unless (($item eq 'solved') || ($item =~ /^award(|msg|ed)$/)) {
+                     $modified{$key} = $record->{$version.':'.$key};
+                 }
+            } elsif ($key =~ m{^(resource\.(?:$partsregexp)\.[^\.]+\.)(.+)$}) {
+                $modified{$1.'hidden'.$2} = $record->{$version.':'.$key};
+            } elsif ($key =~ /^(ip|timestamp|host)$/) {
+                $modified{$key} = $record->{$version.':'.$key};
+            }
+        }
+        if (keys(%modified)) {
+            if (&Apache::lonnet::putstore($env{'request.course.id'},$symb,$version,\%modified,
+                                          $domain,$stuname,$tolog) eq 'ok') {
+                $numchanged ++;
+            }
+        }
+    }
+    return $numchanged;
 }
 
 sub check_and_remove_from_queue {
@@ -3105,13 +3420,13 @@ sub handback_files {
                     my ($directory,$answer_file) = 
                         ($env{'form.'.$newflg.'_'.$part_resp.'_origdoc'.$counter} =~ /^(.*?)([^\/]*)$/);
                     my ($answer_name,$answer_ver,$answer_ext) =
-		        &file_name_version_ext($answer_file);
+		        &Apache::lonnet::file_name_version_ext($answer_file);
 		    my ($portfolio_path) = ($directory =~ /^.+$stuname\/portfolio(.*)/);
                     my $getpropath = 1;
                     my ($dir_list,$listerror) = 
                         &Apache::lonnet::dirlist($portfolio_root.$portfolio_path,
                                                  $domain,$stuname,$getpropath);
-		    my $version = &get_next_version($answer_name,$answer_ext,$dir_list);
+		    my $version = &Apache::lonnet::get_next_version($answer_name,$answer_ext,$dir_list);
                     # fix filename
                     my ($save_file_name) = (($directory.$answer_name.".$version.".$answer_ext) =~ /^.+\/${stuname}\/(.*)/);
                     my $result=&Apache::lonnet::finishuserfileupload($stuname,$domain,
@@ -3260,29 +3575,14 @@ sub version_portfiles {
     my $version_parts = join('|',@$v_flag);
     my @returned_keys;
     my $parts = join('|', @$parts_graded);
-    my $portfolio_root = '/userfiles/portfolio';
     foreach my $key (keys(%$record)) {
         my $new_portfiles;
         if ($key =~ /^resource\.($version_parts)\./ && $key =~ /\.portfiles$/ ) {
             my @versioned_portfiles;
             my @portfiles = split(/\s*,\s*/,$$record{$key});
-            foreach my $file (@portfiles) {
-                &Apache::lonnet::unmark_as_readonly($domain,$stu_name,[$symb,$env{'request.course.id'}],$file);
-                my ($directory,$answer_file) =($file =~ /^(.*?)([^\/]*)$/);
-		my ($answer_name,$answer_ver,$answer_ext) =
-		    &file_name_version_ext($answer_file);
-                my $getpropath = 1;    
-                my ($dir_list,$listerror) = 
-                    &Apache::lonnet::dirlist($portfolio_root.$directory,$domain,
-                                             $stu_name,$getpropath);
-                my $version = &get_next_version($answer_name,$answer_ext,$dir_list);
-                my $new_answer = &version_selected_portfile($domain, $stu_name, $directory, $answer_file, $version);
-                if ($new_answer ne 'problem getting file') {
-                    push(@versioned_portfiles, $directory.$new_answer);
-                    &Apache::lonnet::mark_as_readonly($domain,$stu_name,
-                        [$directory.$new_answer],
-                        [$symb,$env{'request.course.id'},'graded']);
-                }
+            if (@portfiles) {
+                &Apache::lonnet::portfiles_versioning($symb,$domain,$stu_name,\@portfiles,
+                                                      \@versioned_portfiles);
             }
             $$record{$key} = join(',',@versioned_portfiles);
             push(@returned_keys,$key);
@@ -3291,64 +3591,6 @@ sub version_portfiles {
     return (@returned_keys);   
 }
 
-sub get_next_version {
-    my ($answer_name, $answer_ext, $dir_list) = @_;
-    my $version;
-    if (ref($dir_list) eq 'ARRAY') {
-        foreach my $row (@{$dir_list}) {
-            my ($file) = split(/\&/,$row,2);
-            my ($file_name,$file_version,$file_ext) =
-	        &file_name_version_ext($file);
-            if (($file_name eq $answer_name) && 
-	        ($file_ext eq $answer_ext)) {
-                     # gets here if filename and extension match, 
-                     # regardless of version
-                if ($file_version ne '') {
-                    # a versioned file is found  so save it for later
-                    if ($file_version > $version) {
-		        $version = $file_version;
-	            }
-                }
-            }
-        }
-    }
-    $version ++;
-    return($version);
-}
-
-sub version_selected_portfile {
-    my ($domain,$stu_name,$directory,$file_name,$version) = @_;
-    my ($answer_name,$answer_ver,$answer_ext) =
-        &file_name_version_ext($file_name);
-    my $new_answer;
-    $env{'form.copy'} = &Apache::lonnet::getfile("/uploaded/$domain/$stu_name/portfolio$directory$file_name");
-    if($env{'form.copy'} eq '-1') {
-        $new_answer = 'problem getting file';
-    } else {
-        $new_answer = $answer_name.'.'.$version.'.'.$answer_ext;
-        my $copy_result = &Apache::lonnet::finishuserfileupload(
-                            $stu_name,$domain,'copy',
-		        '/portfolio'.$directory.$new_answer);
-    }    
-    return ($new_answer);
-}
-
-sub file_name_version_ext {
-    my ($file)=@_;
-    my @file_parts = split(/\./, $file);
-    my ($name,$version,$ext);
-    if (@file_parts > 1) {
-	$ext=pop(@file_parts);
-	if (@file_parts > 1 && $file_parts[-1] =~ /^\d+$/) {
-	    $version=pop(@file_parts);
-	}
-	$name=join('.',@file_parts);
-    } else {
-	$name=join('.',@file_parts);
-    }
-    return($name,$version,$ext);
-}
-
 #--------------------------------------------------------------------------------------
 #
 #-------------------------- Next few routines handles grading by section or whole class
@@ -3358,6 +3600,7 @@ sub viewgrades_js {
     my ($request) = shift;
 
     my $alertmsg = &mt('A number equal or greater than 0 is expected. Entered value = ');
+    &js_escape(\$alertmsg);
     $request->print(&Apache::lonhtmlcommon::scripttag(<<VIEWJAVASCRIPT));
    function writePoint(partid,weight,point) {
 	var radioButton = document.classgrade["RADVAL_"+partid];
@@ -3525,6 +3768,11 @@ VIEWJAVASCRIPT
 #--- show scores for a section or whole class w/ option to change/update a score
 sub viewgrades {
     my ($request,$symb) = @_;
+    my ($is_tool,$toolsymb);
+    if ($symb =~ /ext\.tool$/) {
+        $is_tool = 1;
+        $toolsymb = $symb;
+    }
     &viewgrades_js($request);
 
     #need to make sure we have the correct data for later EXT calls, 
@@ -3547,19 +3795,73 @@ sub viewgrades {
 	&build_section_inputs().
 	'<input type="hidden" name="Status" value="'.$env{'stu_status'}.'" />'."\n".
 
-    my ($common_header,$specific_header);
-    if ($env{'form.section'} eq 'all') {
-	$common_header = &mt('Assign Common Grade to Class');
-        $specific_header = &mt('Assign Grade to Specific Students in Class');
-    } elsif ($env{'form.section'} eq 'none') {
-        $common_header = &mt('Assign Common Grade to Students in no Section');
-	$specific_header = &mt('Assign Grade to Specific Students in no Section');
-    } else {
-        my $section_display = join (", ",&Apache::loncommon::get_env_multiple('form.section'));
-        $common_header = &mt('Assign Common Grade to Students in Section(s) [_1]',$section_display);
-	$specific_header = &mt('Assign Grade to Specific Students in Section(s) [_1]',$section_display);
+    #retrieve selected groups
+    my (@groups,$group_display);
+    @groups = &Apache::loncommon::get_env_multiple('form.group');
+    if (grep(/^all$/,@groups)) {
+        @groups = ('all');
+    } elsif (grep(/^none$/,@groups)) {
+        @groups = ('none');
+    } elsif (@groups > 0) {
+        $group_display = join(', ',@groups);
+    }
+
+    my ($common_header,$specific_header,@sections,$section_display);
+    @sections = &Apache::loncommon::get_env_multiple('form.section');
+    if (grep(/^all$/,@sections)) {
+        @sections = ('all');
+        if ($group_display) {
+            $common_header = &mt('Assign Common Grade to Students in Group(s) [_1]',$group_display);
+            $specific_header = &mt('Assign Grade to Specific Students in Group(s) [_1]',$group_display);
+        } elsif (grep(/^none$/,@groups)) {
+            $common_header = &mt('Assign Common Grade to Students not assigned to any groups');
+            $specific_header = &mt('Assign Grade to Specific Students not assigned to any groups');
+        } else {
+	    $common_header = &mt('Assign Common Grade to Class');
+            $specific_header = &mt('Assign Grade to Specific Students in Class');
+        }
+    } elsif (grep(/^none$/,@sections)) {
+        @sections = ('none');
+        if ($group_display) {
+            $common_header = &mt('Assign Common Grade to Students in no Section and in Group(s) [_1]',$group_display);
+            $specific_header = &mt('Assign Grade to Specific Students in no Section and in Group(s)',$group_display);
+        } elsif (grep(/^none$/,@groups)) {
+            $common_header = &mt('Assign Common Grade to Students in no Section and in no Group');
+            $specific_header = &mt('Assign Grade to Specific Students in no Section and in no Group');
+        } else {
+            $common_header = &mt('Assign Common Grade to Students in no Section');
+	    $specific_header = &mt('Assign Grade to Specific Students in no Section');
+        }
+    } else {
+        $section_display = join (", ",@sections);
+        if ($group_display) {
+            $common_header = &mt('Assign Common Grade to Students in Section(s) [_1], and in Group(s) [_2]',
+                                 $section_display,$group_display);
+            $specific_header = &mt('Assign Grade to Specific Students in Section(s) [_1], and in Group(s) [_2]',
+                                   $section_display,$group_display);
+        } elsif (grep(/^none$/,@groups)) {
+            $common_header = &mt('Assign Common Grade to Students in Section(s) [_1] and no Group',$section_display);
+            $specific_header = &mt('Assign Grade to Specific Students in Section(s) [_1] and no Group',$section_display);
+        } else {
+            $common_header = &mt('Assign Common Grade to Students in Section(s) [_1]',$section_display);
+	    $specific_header = &mt('Assign Grade to Specific Students in Section(s) [_1]',$section_display);
+        }
     }
-    $result.= '<h3>'.$common_header.'</h3>'.&Apache::loncommon::start_data_table();
+    my %submit_types = &substatus_options();
+    my $submission_status = $submit_types{$env{'form.submitonly'}};
+
+    if ($env{'form.submitonly'} eq 'all') {
+        $result.= '<h3>'.$common_header.'</h3>';
+    } else {
+        my $text;
+        if ($is_tool) {
+            $text = &mt('(transaction status: "[_1]")',$submission_status);
+        } else {
+            $text = &mt('(submission status: "[_1]")',$submission_status);
+        }
+        $result.= '<h3>'.$common_header.'&nbsp;'.$text.'</h3>';
+    }
+    $result .= &Apache::loncommon::start_data_table();
     #radio buttons/text box for assigning points for a section or class.
     #handles different parts of a problem
     my $res_error;
@@ -3570,13 +3872,18 @@ sub viewgrades {
     my %weight = ();
     my $ctsparts = 0;
     my %seen = ();
-    my @part_response_id = &flatten_responseType($responseType);
+    my @part_response_id;
+    if ($is_tool) {
+        @part_response_id = ([0,'']);
+    } else {
+        @part_response_id = &flatten_responseType($responseType);
+    }
     foreach my $part_response_id (@part_response_id) {
     	my ($partid,$respid) = @{ $part_response_id };
 	my $part_resp = join('_',@{ $part_response_id });
 	next if $seen{$partid};
 	$seen{$partid}++;
-	my $handgrade=$$handgrade{$part_resp};
+#	my $handgrade=$$handgrade{$part_resp};
 	my $wgt = &Apache::lonnet::EXT('resource.'.$partid.'.weight',$symb);
 	$weight{$partid} = $wgt eq '' ? '1' : $wgt;
 
@@ -3622,8 +3929,18 @@ sub viewgrades {
 
     #table listing all the students in a section/class
     #header of table
-    $result.= '<h3>'.$specific_header.'</h3>'.
-              &Apache::loncommon::start_data_table().
+    if ($env{'form.submitonly'} eq 'all') {
+        $result.= '<h3>'.$specific_header.'</h3>';
+    } else {
+        my $text;
+        if ($is_tool) {
+            $text = &mt('(transaction status: "[_1]")',$submission_status);
+        } else {
+            $text = &mt('(submission status: "[_1]")',$submission_status);
+        }
+        $result.= '<h3>'.$specific_header.'&nbsp;'.$text.'</h3>';
+    }
+    $result.= &Apache::loncommon::start_data_table().
 	      &Apache::loncommon::start_data_table_header_row().
 	      '<th>'.&mt('No.').'</th>'.
 	      '<th>'.&nameUserString('header')."</th>\n";
@@ -3635,10 +3952,10 @@ sub viewgrades {
     my (undef,undef,$url)=&Apache::lonnet::decode_symb($symb);
     my @partids = ();
     foreach my $part (@parts) {
-	my $display=&Apache::lonnet::metadata($url,$part.'.display');
+	my $display=&Apache::lonnet::metadata($url,$part.'.display',$toolsymb);
         my $narrowtext = &mt('Tries');
 	$display =~ s|^Number of Attempts|$narrowtext <br />|; # makes the column narrower
-	if  (!$display) { $display = &Apache::lonnet::metadata($url,$part.'.name'); }
+	if  (!$display) { $display = &Apache::lonnet::metadata($url,$part.'.name',$toolsymb); }
 	my ($partid) = &split_part_type($part);
         push(@partids,$partid);
 #
@@ -3669,7 +3986,7 @@ sub viewgrades {
 
     #get info for each student
     #list all the students - with points and grade status
-    my (undef,undef,$fullname) = &getclasslist($env{'form.section'},'1');
+    my (undef,undef,$fullname) = &getclasslist(\@sections,'1',\@groups);
     my $ctr = 0;
     foreach (sort 
 	     {
@@ -3678,35 +3995,142 @@ sub viewgrades {
 		 }
 		 return $a cmp $b;
 	     } (keys(%$fullname))) {
-	$ctr++;
 	$result.=&viewstudentgrade($symb,$env{'request.course.id'},
-				   $_,$$fullname{$_},\@parts,\%weight,$ctr,\%last_resets);
+				   $_,$$fullname{$_},\@parts,\%weight,\$ctr,\%last_resets,$is_tool);
     }
     $result.=&Apache::loncommon::end_data_table();
     $result.='<input type="hidden" name="total" value="'.$ctr.'" />'."\n";
     $result.='<input type="button" value="'.&mt('Save').'" '.
 	'onclick="javascript:submit();" target="_self" /></form>'."\n";
-    if (scalar(%$fullname) eq 0) {
-	my $colspan=3+scalar(@parts);
-	my $section_display = join (", ",&Apache::loncommon::get_env_multiple('form.section'));
+    if ($ctr == 0) {
         my $stu_status = join(' or ',&Apache::loncommon::get_env_multiple('form.Status'));
-	$result='<span class="LC_warning">'.
-	    &mt('There are no students in section(s) [_1] with enrollment status [_2] to modify or grade.',
-	        $section_display, $stu_status).
-	    '</span>';
+        $result='<h3><span class="LC_info">'.&mt('Manual Grading').'</span></h3>'.
+                '<span class="LC_warning">';
+        if ($env{'form.submitonly'} eq 'all') {
+            if (grep(/^all$/,@sections)) {
+                if (grep(/^all$/,@groups)) {
+                    $result .= &mt('There are no students with enrollment status [_1] to modify or grade.',
+                                   $stu_status);
+                } elsif (grep(/^none$/,@groups)) {
+                    $result .= &mt('There are no students with no group assigned and with enrollment status [_1] to modify or grade.',
+                                   $stu_status); 
+                } else {
+                    $result .= &mt('There are no students in group(s) [_1] with enrollment status [_2] to modify or grade.',
+                                   $group_display,$stu_status);
+                }
+            } elsif (grep(/^none$/,@sections)) {
+                if (grep(/^all$/,@groups)) {
+                    $result .= &mt('There are no students in no section with enrollment status [_1] to modify or grade.',
+                                   $stu_status);
+                } elsif (grep(/^none$/,@groups)) {
+                    $result .= &mt('There are no students in no section and no group with enrollment status [_1] to modify or grade.',
+                                   $stu_status);
+                } else {
+                    $result .= &mt('There are no students in no section in group(s) [_1] with enrollment status [_2] to modify or grade.',
+                                   $group_display,$stu_status);
+                }
+            } else {
+                if (grep(/^all$/,@groups)) {
+                    $result .= &mt('There are no students in section(s) [_1] with enrollment status [_2] to modify or grade.',
+                                   $section_display,$stu_status);
+                } elsif (grep(/^none$/,@groups)) {
+                    $result .= &mt('There are no students in section(s) [_1] and no group with enrollment status [_2] to modify or grade.',
+                                   $section_display,$stu_status);
+                } else {
+                    $result .= &mt('There are no students in section(s) [_1] and group(s) [_2] with enrollment status [_3] to modify or grade.',
+                                   $section_display,$group_display,$stu_status);
+                }
+            }
+        } else {
+            if (grep(/^all$/,@sections)) {
+                if (grep(/^all$/,@groups)) {
+                    $result .= &mt('There are no students with enrollment status [_1] and submission status "[_2]" to modify or grade.',
+                                   $stu_status,$submission_status);
+                } elsif (grep(/^none$/,@groups)) {
+                    $result .= &mt('There are no students with no group assigned with enrollment status [_1] and submission status "[_2]" to modify or grade.',
+                                   $stu_status,$submission_status);
+                } else {
+                    $result .= &mt('There are no students in group(s) [_1] with enrollment status [_2] and submission status "[_3]" to modify or grade.',
+                                   $group_display,$stu_status,$submission_status);
+                }
+            } elsif (grep(/^none$/,@sections)) {
+                if (grep(/^all$/,@groups)) {
+                    $result .= &mt('There are no students in no section with enrollment status [_1] and submission status "[_2]" to modify or grade.',
+                                   $stu_status,$submission_status);
+                } elsif (grep(/^none$/,@groups)) {
+                    $result .= &mt('There are no students in no section and no group with enrollment status [_1] and submission status "[_2]" to modify or grade.',
+                                   $stu_status,$submission_status);
+                } else {
+                    $result .= &mt('There are no students in no section in group(s) [_1] with enrollment status [_2] and submission status "[_3]" to modify or grade.',
+                                   $group_display,$stu_status,$submission_status);
+                }
+            } else {
+                if (grep(/^all$/,@groups)) {
+	            $result .= &mt('There are no students in section(s) [_1] with enrollment status [_2] and submission status "[_3]" to modify or grade.',
+	                           $section_display,$stu_status,$submission_status);
+                } elsif (grep(/^none$/,@groups)) {
+                    $result .= &mt('There are no students in section(s) [_1] and no group with enrollment status [_2] and submission status "[_3]" to modify or grade.',
+                                   $section_display,$stu_status,$submission_status);
+                } else {
+                    $result .= &mt('There are no students in section(s) [_1] and group(s) [_2] with enrollment status [_3] and submission status "[_4]" to modify or grade.',
+                                   $section_display,$group_display,$stu_status,$submission_status);
+                }
+            }
+        }
+	$result .= '</span><br />';
     }
     return $result;
 }
 
-#--- call by previous routine to display each student
+#--- call by previous routine to display each student who satisfies submission filter. 
 sub viewstudentgrade {
-    my ($symb,$courseid,$student,$fullname,$parts,$weight,$ctr,$last_resets) = @_;
+    my ($symb,$courseid,$student,$fullname,$parts,$weight,$ctr,$last_resets,$is_tool) = @_;
     my ($uname,$udom) = split(/:/,$student);
     my %record=&Apache::lonnet::restore($symb,$courseid,$udom,$uname);
-    my %aggregates = (); 
+    my $submitonly = $env{'form.submitonly'};
+    unless (($submitonly eq 'all') || ($submitonly eq 'queued')) {
+        my %partstatus = ();
+        if (ref($parts) eq 'ARRAY') {
+            foreach my $apart (@{$parts}) {
+                my ($part,$type) = &split_part_type($apart);
+                my ($status,undef) = split(/_/,$record{"resource.$part.solved"},2);
+                $status = 'nothing' if ($status eq '');
+                $partstatus{$part}      = $status;
+                my $subkey = "resource.$part.submitted_by";
+                $partstatus{$subkey} = $record{$subkey} if ($record{$subkey} ne '');
+            }
+            my $submitted = 0;
+            my $graded = 0;
+            my $incorrect = 0;
+            foreach my $key (keys(%partstatus)) {
+                $submitted = 1 if ($partstatus{$key} ne 'nothing');
+                $graded = 1 if ($partstatus{$key} =~ /^ungraded/);
+                $incorrect = 1 if ($partstatus{$key} =~ /^incorrect/);
+
+                my $partid = (split(/\./,$key))[1];
+                if ($partstatus{'resource.'.$partid.'.'.$key.'.submitted_by'} ne '') {
+                    $submitted = 0;
+                }
+            }
+            return if (!$submitted && ($submitonly eq 'yes' ||
+                                       $submitonly eq 'incorrect' ||
+                                       $submitonly eq 'graded'));
+            return if (!$graded && ($submitonly eq 'graded'));
+            return if (!$incorrect && $submitonly eq 'incorrect');
+        }
+    }
+    if ($submitonly eq 'queued') {
+        my ($cdom,$cnum) = split(/_/,$courseid);
+        my %queue_status =
+            &Apache::bridgetask::get_student_status($symb,$cdom,$cnum,
+                                                    $udom,$uname);
+        return if (!defined($queue_status{'gradingqueue'}));
+    }
+    $$ctr++;
+    my %aggregates = ();
     my $result=&Apache::loncommon::start_data_table_row().'<td align="right">'.
-	'<input type="hidden" name="ctr'.($ctr-1).'" value="'.$student.'" />'.
-	"\n".$ctr.'&nbsp;</td><td>&nbsp;'.
+	'<input type="hidden" name="ctr'.($$ctr-1).'" value="'.$student.'" />'.
+	"\n".$$ctr.'&nbsp;</td><td>&nbsp;'.
 	'<a href="javascript:viewOneStudent(\''.$uname.'\',\''.$udom.
 	'\');" target="_self">'.$fullname.'</a> '.
 	'<span class="LC_internal_info">('.$uname.($env{'user.domain'} eq $udom ? '' : ':'.$udom).')</span></td>'."\n";
@@ -3718,7 +4142,6 @@ sub viewstudentgrade {
         my ($aggtries,$totaltries);
         unless (exists($aggregates{$part})) {
 	    $totaltries = $record{'resource.'.$part.'.tries'};
-
 	    $aggtries = $totaltries;
             if ($$last_resets{$part}) {  
                 $aggtries = &get_num_tries(\%record,$$last_resets{$part},
@@ -3767,6 +4190,10 @@ sub viewstudentgrade {
 #    record does not get update if unchanged
 sub editgrades {
     my ($request,$symb) = @_;
+    my $toolsymb;
+    if ($symb =~ /ext\.tool$/) {
+        $toolsymb = $symb;
+    }
 
     my $section_display = join (", ",&Apache::loncommon::get_env_multiple('form.section'));
     my $title='<h2>'.&mt('Current Grade Status').'</h2>';
@@ -3804,6 +4231,7 @@ sub editgrades {
 	$ctr++;
     }
     my (undef,undef,$url) = &Apache::lonnet::decode_symb($symb);
+    my $totcolspan = 0;
     foreach my $partid (@partid) {
 	$header .= '<th align="center">'.&mt('Old Score').'</th>'.
 	    '<th align="center">'.&mt('New Score').'</th>';
@@ -3812,7 +4240,7 @@ sub editgrades {
 	    my ($part,$type) = &split_part_type($stores);
 	    if ($part !~ m/^\Q$partid\E/) { next;}
 	    if ($type eq 'awarded' || $type eq 'solved') { next; }
-	    my $display=&Apache::lonnet::metadata($url,$stores.'.display');
+	    my $display=&Apache::lonnet::metadata($url,$stores.'.display',$toolsymb);
 	    $display =~ s/\[Part: \Q$part\E\]//;
             my $narrowtext = &mt('Tries');
 	    $display =~ s/Number of Attempts/$narrowtext/;
@@ -3820,6 +4248,7 @@ sub editgrades {
 		'<th align="center">'.&mt('New').' '.$display.'</th>';
 	    $columns{$partid}+=2;
 	}
+        $totcolspan += $columns{$partid};
     }
     foreach my $partid (@partid) {
 	my $display_part=&get_display_part($partid,$symb);
@@ -3835,18 +4264,18 @@ sub editgrades {
     my @noupdate;
     my ($updateCtr,$noupdateCtr) = (1,1);
     for ($i=0; $i<$env{'form.total'}; $i++) {
-	my $line;
 	my $user = $env{'form.ctr'.$i};
 	my ($uname,$udom)=split(/:/,$user);
 	my %newrecord;
 	my $updateflag = 0;
-	$line .= '<td>'.&nameUserString(undef,$$fullname{$user},$uname,$udom).'</td>';
 	my $usec=$classlist->{"$uname:$udom"}[5];
-	if (!&canmodify($usec)) {
-	    my $numcols=scalar(@partid)*4+2;
+	my $canmodify = &canmodify($usec);
+	my $line = '<td'.($canmodify?'':' colspan="2"').'>'.
+		   &nameUserString(undef,$$fullname{$user},$uname,$udom).'</td>';
+	if (!$canmodify) {
 	    push(@noupdate,
-		 $line."<td colspan=\"$numcols\"><span class=\"LC_warning\">".
-		 &mt('Not allowed to modify student')."</span></td></tr>");
+		 $line."<td colspan=\"$totcolspan\"><span class=\"LC_warning\">".
+		 &mt('Not allowed to modify student')."</span></td>");
 	    next;
 	}
         my %aggregate = ();
@@ -3963,8 +4392,7 @@ sub editgrades {
         }
     }
     if (@noupdate) {
-#	my $numcols=(scalar(@partid)*(scalar(@parts)-1)*2)+3;
-	my $numcols=scalar(@partid)*4+2;
+        my $numcols=$totcolspan+2;
 	$result .= &Apache::loncommon::start_data_table_row('LC_empty_row').
 	    '<td align="center" colspan="'.$numcols.'">'.
 	    &mt('No Changes Occurred For the Students Below').
@@ -4005,20 +4433,24 @@ sub split_part_type {
 #
 #--- Javascript to handle csv upload
 sub csvupload_javascript_reverse_associate {
-    my $error1=&mt('You need to specify the username or the student/employee ID');
+    my $error1=&mt('You need to specify the username, the student/employee ID, or the clicker ID');
     my $error2=&mt('You need to specify at least one grading field');
+  &js_escape(\$error1);
+  &js_escape(\$error2);
   return(<<ENDPICK);
   function verify(vf) {
     var foundsomething=0;
     var founduname=0;
     var foundID=0;
+    var foundclicker=0;
     for (i=0;i<=vf.nfields.value;i++) {
       tw=eval('vf.f'+i+'.selectedIndex');
       if (i==0 && tw!=0) { foundID=1; }
       if (i==1 && tw!=0) { founduname=1; }
-      if (i!=0 && i!=1 && i!=2 && tw!=0) { foundsomething=1; }
+      if (i==2 && tw!=0) { foundclicker=1; }
+      if (i!=0 && i!=1 && i!=2 && i!=3 && tw!=0) { foundsomething=1; }
     }
-    if (founduname==0 && foundID==0) {
+    if (founduname==0 && foundID==0 && foundclicker==0) {
 	alert('$error1');
 	return;
     }
@@ -4045,20 +4477,24 @@ ENDPICK
 }
 
 sub csvupload_javascript_forward_associate {
-    my $error1=&mt('You need to specify the username or the student/employee ID');
+    my $error1=&mt('You need to specify the username, the student/employee ID, or the clicker ID');
     my $error2=&mt('You need to specify at least one grading field');
+  &js_escape(\$error1);
+  &js_escape(\$error2);
   return(<<ENDPICK);
   function verify(vf) {
     var foundsomething=0;
     var founduname=0;
     var foundID=0;
+    var foundclicker=0;
     for (i=0;i<=vf.nfields.value;i++) {
       tw=eval('vf.f'+i+'.selectedIndex');
       if (tw==1) { foundID=1; }
       if (tw==2) { founduname=1; }
-      if (tw>3) { foundsomething=1; }
+      if (tw==3) { foundclicker=1; }
+      if (tw>4) { foundsomething=1; }
     }
-    if (founduname==0 && foundID==0) {
+    if (founduname==0 && foundID==0 && ƒoundclicker==0) {
 	alert('$error1');
 	return;
     }
@@ -4116,6 +4552,10 @@ ENDPICK
 
 sub csvupload_fields {
     my ($symb,$errorref) = @_;
+    my $toolsymb;
+    if ($symb =~ /ext\.tool$/) {
+        $toolsymb = $symb;
+    }
     my (@parts) = &getpartlist($symb,$errorref);
     if (ref($errorref)) {
         if ($$errorref) {
@@ -4125,13 +4565,14 @@ sub csvupload_fields {
 
     my @fields=(['ID','Student/Employee ID'],
 		['username','Student Username'],
+		['clicker','Clicker ID'],
 		['domain','Student Domain']);
     my (undef,undef,$url) = &Apache::lonnet::decode_symb($symb);
     foreach my $part (sort(@parts)) {
 	my @datum;
-	my $display=&Apache::lonnet::metadata($url,$part.'.display');
+	my $display=&Apache::lonnet::metadata($url,$part.'.display',$toolsymb);
 	my $name=$part;
-	if  (!$display) { $display = $name; }
+	if (!$display) { $display = $name; }
 	@datum=($name,$display);
 	if ($name=~/^stores_(.*)_awarded/) {
 	    push(@fields,['stores_'.$1.'_points',"Points [Part: $1]"]);
@@ -4143,17 +4584,19 @@ sub csvupload_fields {
 
 sub csvuploadmap_footer {
     my ($request,$i,$keyfields) =@_;
+    my $buttontext = &mt('Assign Grades');
     $request->print(<<ENDPICK);
 </table>
 <input type="hidden" name="nfields" value="$i" />
 <input type="hidden" name="keyfields" value="$keyfields" />
-<input type="button" onclick="javascript:verify(this.form)" value="Assign Grades" /><br />
+<input type="button" onclick="javascript:verify(this.form)" value="$buttontext" /><br />
 </form>
 ENDPICK
 }
 
 sub checkforfile_js {
     my $alertmsg = &mt('Please use the browse button to select a file from your local directory.');
+    &js_escape(\$alertmsg);
     my $result = &Apache::lonhtmlcommon::scripttag(<<CSVFORMJS);
     function checkUpload(formname) {
 	if (formname.upfile.value == "") {
@@ -4204,8 +4647,10 @@ sub csvuploadmap {
     if (!$env{'form.datatoken'}) {
 	$datatoken=&Apache::loncommon::upfile_store($request);
     } else {
-	$datatoken=$env{'form.datatoken'};
-	&Apache::loncommon::load_tmp_file($request);
+	$datatoken=&Apache::loncommon::valid_datatoken($env{'form.datatoken'});
+        if ($datatoken ne '') {
+	    &Apache::loncommon::load_tmp_file($request,$datatoken);
+        }
     }
     my @records=&Apache::loncommon::upfile_record_sep();
     &csvuploadmap_header($request,$symb,$datatoken,$#records+1);
@@ -4268,7 +4713,7 @@ ENDPICK
     }
     # FIXME do a check for any duplicated user ids...
     # FIXME do a check for any invalid user ids?...
-    $request->print('<input type="submit" value="Assign Grades" /><br />
+    $request->print('<input type="submit" value="'.&mt('Assign Grades').'" /><br />
 <hr /></form>'."\n");
     return '';
 }
@@ -4294,7 +4739,10 @@ sub csvuploadassign {
     my ($request,$symb)= @_;
     if (!$symb) {return '';}
     my $error_msg = '';
-    &Apache::loncommon::load_tmp_file($request);
+    my $datatoken = &Apache::loncommon::valid_datatoken($env{'form.datatoken'});
+    if ($datatoken ne '') { 
+        &Apache::loncommon::load_tmp_file($request,$datatoken);
+    }
     my @gradedata = &Apache::loncommon::upfile_record_sep();
     my %fields=&get_fields();
     my $courseid=$env{'request.course.id'};
@@ -4317,13 +4765,45 @@ sub csvuploadassign {
 	if (!$username) {
 	    my $id=$entries{$fields{'ID'}};
 	    $id=~s/\s//g;
-	    my %ids=&Apache::lonnet::idget($domain,$id);
-	    $username=$ids{$id};
+            if ($id ne '') {
+	        my %ids=&Apache::lonnet::idget($domain,[$id]);
+	        $username=$ids{$id};
+            } else {
+                if ($entries{$fields{'clicker'}}) {
+                    my $clicker = $entries{$fields{'clicker'}};
+                    $clicker=~s/\s//g;
+                    if ($clicker ne '') {
+                        my %clickers = &Apache::lonnet::idget($domain,[$clicker],'clickers');
+                        if ($clickers{$clicker} ne '') {  
+                            my $match = 0;
+                            my @inclass;
+                            foreach my $poss (split(/,/,$clickers{$clicker})) {
+                                if (exists($$classlist{"$poss:$domain"})) {
+                                    $username = $poss;
+                                    push(@inclass,$poss);
+                                    $match ++;
+                                    
+                                }
+                            }
+                            if ($match > 1) {
+                                undef($username); 
+                                $request->print('<p class="LC_warning">'.
+                                                &mt('Score not saved for clicker: [_1] (matched multiple usernames: [_2])',
+                                                $clicker,join(', ',@inclass)).'</p>');
+                            }
+                        }
+                    }
+                }
+            }
 	}
 	if (!exists($$classlist{"$username:$domain"})) {
 	    my $id=$entries{$fields{'ID'}};
 	    $id=~s/\s//g;
-	    if ($id) {
+            my $clicker = $entries{$fields{'clicker'}};
+            $clicker=~s/\s//g;
+            if ($clicker) {
+                push(@skipped,"$clicker:$domain");
+	    } elsif ($id) {
 		push(@skipped,"$id:$domain");
 	    } else {
 		push(@skipped,"$username:$domain");
@@ -4423,6 +4903,7 @@ sub pickStudentPage {
     my ($request,$symb) = @_;
 
     my $alertmsg = &mt('Please select the student you wish to grade.');
+    &js_escape(\$alertmsg);
     $request->print(&Apache::lonhtmlcommon::scripttag(<<LISTJAVASCRIPT));
 
 function checkPickOne(formname) {
@@ -4581,7 +5062,7 @@ sub getSymbMap {
     my @sequences = $navmap->retrieveResources(undef, sub { shift->is_map(); },
 					       1,0,1);
     for my $sequence ($navmap->getById('0.0'), @sequences) {
-	if ($navmap->hasResource($sequence, sub { shift->is_problem(); }, 0) ) {
+	if ($navmap->hasResource($sequence, sub { shift->is_gradable(); }, 0) ) {
 	    my $title = $minder.'.'.
 		&HTML::Entities::encode($sequence->compTitle(),'"\'&');
 	    push(@titles, $title); # minder in case two titles are identical
@@ -4612,8 +5093,12 @@ sub displayPage {
     &Apache::lonnet::clear_EXT_cache_status();
 
     if (!&canview($usec)) {
-	$request->print('<span class="LC_warning">'.&mt('Unable to view requested student. ([_1])',$env{'form.student'}).'</span>');
-	return;
+        $request->print(
+            '<span class="LC_warning">'.
+            &mt('Unable to view requested student. ([_1])',
+                    $env{'form.student'}).
+            '</span>');
+        return;
     }
     my $result='<h3><span class="LC_info">&nbsp;'.$env{'form.title'}.'</span></h3>';
     $result.='<h3>&nbsp;'.&mt('Student: [_1]',&nameUserString(undef,$$fullname{$env{'form.student'}},$uname,$udom)).
@@ -4674,10 +5159,11 @@ sub displayPage {
         if($curRes == $iterator->BEGIN_MAP) { $depth++; }
         if($curRes == $iterator->END_MAP) { $depth--; }
 
-        if (ref($curRes) && $curRes->is_problem()) {
+        if (ref($curRes) && $curRes->is_gradable()) {
 	    my $parts = $curRes->parts();
             my $title = $curRes->compTitle();
 	    my $symbx = $curRes->symb();
+            my $is_tool = ($symbx =~ /ext\.tool$/);
 	    $studentTable.=
 		&Apache::loncommon::start_data_table_row().
 		'<td align="center" valign="top" >'.$prob.
@@ -4688,26 +5174,34 @@ sub displayPage {
 		 '</td>';
 	    $studentTable.='<td valign="top">';
 	    my %form = ('CODE' => $env{'form.CODE'},);
-	    if ($env{'form.vProb'} eq 'yes' ) {
-		$studentTable.=&show_problem($request,$symbx,$uname,$udom,1,
-					     undef,'both',\%form);
-	    } else {
-		my $companswer = &Apache::loncommon::get_student_answers($symbx,$uname,$udom,$env{'request.course.id'},%form);
-		$companswer =~ s|<form(.*?)>||g;
-		$companswer =~ s|</form>||g;
-#		while ($companswer =~ /(<a href\=\"javascript:newWindow.*?Script Vars<\/a>)/s) { #<a href="javascript:newWindow</a>
-#		    $companswer =~ s/$1/ /ms;
-#		    $request->print('match='.$1."<br />\n");
-#		}
-#		$companswer =~ s|<table border=\"1\">|<table border=\"0\">|g;
-		$studentTable.='&nbsp;<b>'.$title.'</b>&nbsp;<br />&nbsp;<b>'.&mt('Correct answer').':</b><br />'.$companswer;
+            if ($is_tool) {
+                $studentTable.='&nbsp;<b>'.$title.'</b><br />';
+            } else {
+	        if ($env{'form.vProb'} eq 'yes' ) {
+		    $studentTable.=&show_problem($request,$symbx,$uname,$udom,1,
+					         undef,'both',\%form);
+	        } else {
+		    my $companswer = &Apache::loncommon::get_student_answers($symbx,$uname,$udom,$env{'request.course.id'},%form);
+		    $companswer =~ s|<form(.*?)>||g;
+		    $companswer =~ s|</form>||g;
+#		    while ($companswer =~ /(<a href\=\"javascript:newWindow.*?Script Vars<\/a>)/s) { #<a href="javascript:newWindow</a>
+#		        $companswer =~ s/$1/ /ms;
+#		        $request->print('match='.$1."<br />\n");
+#		    }
+#		    $companswer =~ s|<table border=\"1\">|<table border=\"0\">|g;
+		    $studentTable.='&nbsp;<b>'.$title.'</b>&nbsp;<br />&nbsp;<b>'.&mt('Correct answer').':</b><br />'.$companswer;
+		}
 	    }
 
 	    my %record = &Apache::lonnet::restore($symbx,$env{'request.course.id'},$udom,$uname);
 
 	    if ($env{'form.lastSub'} eq 'datesub') {
 		if ($record{'version'} eq '') {
-		    $studentTable.='<br />&nbsp;<span class="LC_warning">'.&mt('No recorded submission for this problem.').'</span><br />';
+                    my $msg = &mt('No recorded submission for this problem.');
+                    if ($is_tool) {
+                        $msg = &mt('No recorded transactions for this external tool');
+                    }
+		    $studentTable.='<br />&nbsp;<span class="LC_warning">'.$msg.'</span><br />';
 		} else {
 		    my %responseType = ();
 		    foreach my $partid (@{$parts}) {
@@ -4720,13 +5214,14 @@ sub displayPage {
 			$responseType{$partid} = \%responseIds;
 		    }
 		    $studentTable.= &displaySubByDates($symbx,\%record,$parts,\%responseType,$checkIcon,$uname,$udom);
-
 		}
 	    } elsif ($env{'form.lastSub'} eq 'all') {
 		my $last = ($env{'form.lastSub'} eq 'last' ? 'last' : '');
+                my $identifier = (&canmodify($usec)? $prob : ''); 
 		$studentTable.=&Apache::loncommon::get_previous_attempt($symbx,$uname,$udom,
 									$env{'request.course.id'},
-									'','.submission');
+									'','.submission',undef,
+                                                                        $usec,$identifier);
  
 	    }
 	    if (&canmodify($usec)) {
@@ -4759,13 +5254,14 @@ sub displaySubByDates {
     my ($symb,$record,$parts,$responseType,$checkIcon,$uname,$udom) = @_;
     my $isCODE=0;
     my $isTask = ($symb =~/\.task$/);
+    my $is_tool = ($symb =~/\.tool$/);
     if (exists($record->{'resource.CODE'})) { $isCODE=1; }
     my $studentTable=&Apache::loncommon::start_data_table().
 	&Apache::loncommon::start_data_table_header_row().
 	'<th>'.&mt('Date/Time').'</th>'.
 	($isCODE?'<th>'.&mt('CODE').'</th>':'').
         ($isTask?'<th>'.&mt('Version').'</th>':'').
-	'<th>'.&mt('Submission').'</th>'.
+	'<th>'.($is_tool?&mt('Grade'):&mt('Submission')).'</th>'.
 	'<th>'.&mt('Status').'</th>'.
 	&Apache::loncommon::end_data_table_header_row();
     my ($version);
@@ -4773,12 +5269,16 @@ sub displaySubByDates {
     my %orders;
     $mark{'correct_by_student'} = $checkIcon;
     if (!exists($$record{'1:timestamp'})) {
-	return '<br />&nbsp;<span class="LC_warning">'.&mt('Nothing submitted - no attempts.').'</span><br />';
+        if ($is_tool) {
+            return '<br />&nbsp;<span class="LC_warning">'.&mt('No grade passed back.').'</span><br />';
+        } else {
+            return '<br />&nbsp;<span class="LC_warning">'.&mt('Nothing submitted - no attempts.').'</span><br />';
+        }
     }
 
     my $interaction;
     my $no_increment = 1;
-    my %lastrndseed;
+    my (%lastrndseed,%lasttype);
     for ($version=1;$version<=$$record{'version'};$version++) {
 	my $timestamp = 
 	    &Apache::lonlocal::locallocaltime($$record{$version.':timestamp'});
@@ -4806,54 +5306,64 @@ sub displaySubByDates {
             if (($type eq 'anonsurvey') || ($type eq 'anonsurveycred')) {
                 $hidden = 1;
             }
-	    my @matchKey = ($isTask ? sort(grep /^resource\.\d+\.\Q$partid\E\.award$/,@versionKeys)
-			            : sort(grep /^resource\.\Q$partid\E\..*?\.submission$/,@versionKeys));
-	    
+            my @matchKey;
+            if ($isTask) {
+                @matchKey = sort(grep /^resource\.\d+\.\Q$partid\E\.award$/,@versionKeys);
+            } elsif ($is_tool) {
+                @matchKey = sort(grep /^resource\.\Q$partid\E\.awarded$/,@versionKeys);
+            } else {
+                @matchKey = sort(grep /^resource\.\Q$partid\E\..*?\.submission$/,@versionKeys);
+            }
 #	    next if ($$record{"$version:resource.$partid.solved"} eq '');
 	    my $display_part=&get_display_part($partid,$symb);
 	    foreach my $matchKey (@matchKey) {
 		if (exists($$record{$version.':'.$matchKey}) &&
 		    $$record{$version.':'.$matchKey} ne '') {
-                    
-		    my ($responseId)= ($isTask ? ($matchKey=~ /^resource\.(.*?)\.\Q$partid\E\.award$/)
-				               : ($matchKey=~ /^resource\.\Q$partid\E\.(.*?)\.submission$/));
-                    $displaySub[0].='<span class="LC_nobreak">';
-                    $displaySub[0].='<b>'.&mt('Part: [_1]',$display_part).'</b>'
-                                   .' <span class="LC_internal_info">'
-                                   .'('.&mt('Response ID: [_1]',$responseId).')'
-                                   .'</span>'
-                                   .' <b>';
-                    if ($hidden) {
-                        $displaySub[0].= &mt('Anonymous Survey').'</b>';
+                    if ($is_tool) {
+                        $displaySub[0].=$$record{"$version:resource.$partid.awarded"};
                     } else {
-                        my ($trial,$rndseed,$newvariation);
-                        if ($type eq 'randomizetry') {
-                            $trial = $$record{"$where.$partid.tries"};
-                            $rndseed = $$record{"$where.$partid.rndseed"};
-                        }
-		        if ($$record{"$where.$partid.tries"} eq '') {
-			    $displaySub[0].=&mt('Trial not counted');
-		        } else {
-			    $displaySub[0].=&mt('Trial: [_1]',
-					    $$record{"$where.$partid.tries"});
-                            if ($rndseed || $lastrndseed{$partid}) {
-                                if ($rndseed ne $lastrndseed{$partid}) {
-                                    $newvariation = '&nbsp;('.&mt('New variation this try').')';
-                                }
+		        my ($responseId)= ($isTask ? ($matchKey=~ /^resource\.(.*?)\.\Q$partid\E\.award$/)
+				                   : ($matchKey=~ /^resource\.\Q$partid\E\.(.*?)\.submission$/));
+                        $displaySub[0].='<span class="LC_nobreak">';
+                        $displaySub[0].='<b>'.&mt('Part: [_1]',$display_part).'</b>'
+                                       .' <span class="LC_internal_info">'
+                                       .'('.&mt('Response ID: [_1]',$responseId).')'
+                                       .'</span>'
+                                       .' <b>';
+                        if ($hidden) {
+                            $displaySub[0].= &mt('Anonymous Survey').'</b>';
+                        } else {
+                            my ($trial,$rndseed,$newvariation);
+                            if ($type eq 'randomizetry') {
+                                $trial = $$record{"$where.$partid.tries"};
+                                $rndseed = $$record{"$where.$partid.rndseed"};
                             }
-                            $lastrndseed{$partid} = $rndseed;
-		        }
-		        my $responseType=($isTask ? 'Task'
+		            if ($$record{"$where.$partid.tries"} eq '') {
+			        $displaySub[0].=&mt('Trial not counted');
+		            } else {
+			        $displaySub[0].=&mt('Trial: [_1]',
+					        $$record{"$where.$partid.tries"});
+                                if (($rndseed ne '') && ($lastrndseed{$partid} ne '')) {
+                                    if (($rndseed ne $lastrndseed{$partid}) &&
+                                        (($type eq 'randomizetry') || ($lasttype{$partid} eq 'randomizetry'))) {
+                                        $newvariation = '&nbsp;('.&mt('New variation this try').')';
+                                    }
+                                }
+                                $lastrndseed{$partid} = $rndseed;
+                                $lasttype{$partid} = $type;
+		            }
+		            my $responseType=($isTask ? 'Task'
                                               : $responseType->{$partid}->{$responseId});
-		        if (!exists($orders{$partid})) { $orders{$partid}={}; }
-		        if ((!exists($orders{$partid}->{$responseId})) || ($trial)) {
-			    $orders{$partid}->{$responseId}=
-			        &get_order($partid,$responseId,$symb,$uname,$udom,
-                                           $no_increment,$type,$trial,$rndseed);
-		        }
-		        $displaySub[0].='</b>'.$newvariation.'</span>'; # /nobreak
-		        $displaySub[0].='&nbsp; '.
-			    &cleanRecord($$record{$version.':'.$matchKey},$responseType,$symb,$partid,$responseId,$record,$orders{$partid}->{$responseId},"$version:",$uname,$udom,$type,$trial,$rndseed).'<br />';
+		            if (!exists($orders{$partid})) { $orders{$partid}={}; }
+		            if ((!exists($orders{$partid}->{$responseId})) || ($trial)) {
+			        $orders{$partid}->{$responseId}=
+			            &get_order($partid,$responseId,$symb,$uname,$udom,
+                                               $no_increment,$type,$trial,$rndseed);
+		            }
+		            $displaySub[0].='</b>'.$newvariation.'</span>'; # /nobreak
+		            $displaySub[0].='&nbsp; '.
+			        &cleanRecord($$record{$version.':'.$matchKey},$responseType,$symb,$partid,$responseId,$record,$orders{$partid}->{$responseId},"$version:",$uname,$udom,$type,$trial,$rndseed).'<br />';
+                        }
                     }
 		}
 	    }
@@ -4868,14 +5378,22 @@ sub displaySubByDates {
 		    lc($$record{"$where.$partid.award"}).' '.
 		    $mark{$$record{"$where.$partid.solved"}}.
 		    '<br />';
+	    } elsif (($is_tool) && (exists($$record{"$version:resource.$partid.solved"}))) {
+		if ($$record{"$version:resource.$partid.solved"} =~ /^(in|)correct_by_passback$/) {
+		    $displaySub[1].=&mt('Grade passed back by external tool');
+		}
 	    }
 	    if (exists $$record{"$where.$partid.regrader"}) {
-		$displaySub[2].=$$record{"$where.$partid.regrader"}.
-		    ' (<b>'.&mt('Part').':</b> '.$display_part.')';
+		$displaySub[2].=$$record{"$where.$partid.regrader"};
+		unless ($is_tool) {
+		    $displaySub[2].=' (<b>'.&mt('Part').':</b> '.$display_part.')';
+		}
 	    } elsif ($$record{"$version:resource.$partid.regrader"} =~ /\S/) {
 		$displaySub[2].=
-		    $$record{"$version:resource.$partid.regrader"}.
-		    ' (<b>'.&mt('Part').':</b> '.$display_part.')';
+		    $$record{"$version:resource.$partid.regrader"};
+                unless ($is_tool) {
+		    $displaySub[2].=' (<b>'.&mt('Part').':</b> '.$display_part.')';
+                }
 	    }
 	}
 	# needed because old essay regrader has not parts info
@@ -4939,7 +5457,7 @@ sub updateGradeByPage {
 
     $iterator->next(); # skip the first BEGIN_MAP
     my $curRes = $iterator->next(); # for "current resource"
-    my ($depth,$question,$prob,$changeflag)= (1,1,1,0);
+    my ($depth,$question,$prob,$changeflag,$hideflag)= (1,1,1,0,0);
     while ($depth > 0) {
         if($curRes == $iterator->BEGIN_MAP) { $depth++; }
         if($curRes == $iterator->END_MAP) { $depth--; }
@@ -4960,6 +5478,12 @@ sub updateGradeByPage {
 	    my @displayPts=();
             my %aggregate = ();
             my $aggregateflag = 0;
+            if ($env{'form.HIDE'.$prob}) {
+                my %record = &Apache::lonnet::restore($symbx,$env{'request.course.id'},$udom,$uname);
+                my ($version,$parts) = split(/:/,$env{'form.HIDE'.$prob},2);
+                my $numchgs = &makehidden($version,$parts,\%record,$symbx,$udom,$uname,1);
+                $hideflag += $numchgs;
+            }
 	    foreach my $partid (@{$parts}) {
 		my $newpts = $env{'form.GD_BOX'.$question.'_'.$partid};
 		my $oldpts = $env{'form.oldpts'.$question.'_'.$partid};
@@ -5050,8 +5574,11 @@ sub updateGradeByPage {
     $studentTable.=&Apache::loncommon::end_data_table();
     my $grademsg=($changeflag == 0 ? &mt('No score was changed or updated.') :
 		  &mt('The scores were changed for [quant,_1,problem].',
-		  $changeflag));
-    $request->print($grademsg.$studentTable);
+		  $changeflag).'<br />');
+    my $hidemsg=($hideflag == 0 ? '' :
+                 &mt('Submissions were marked "hidden" for [quant,_1,transaction].',
+                     $hideflag).'<br />');
+    $request->print($hidemsg.$grademsg.$studentTable);
 
     return '';
 }
@@ -5086,7 +5613,7 @@ like.
 Next each scanline is checked for any errors of either 'missing
 bubbles' (it's an error because it may have been mis-scanned
 because too light bubbling), 'double bubble' (each bubble line should
-have no more that one letter picked), invalid or duplicated CODE,
+have no more than one letter picked), invalid or duplicated CODE,
 invalid student/employee ID
 
 If the CODE option is used that determines the randomization of the
@@ -5278,7 +5805,7 @@ sub scantron_uploads {
 sub scantron_scantab {
     my $result='<select name="scantron_format">'."\n";
     $result.='<option></option>'."\n";
-    my @lines = &get_scantronformat_file();
+    my @lines = &Apache::lonnet::get_scantronformat_file();
     if (@lines > 0) {
         foreach my $line (@lines) {
             next if (($line =~ /^\#/) || ($line eq ''));
@@ -5290,62 +5817,6 @@ sub scantron_scantab {
     return $result;
 }
 
-=pod
-
-=item get_scantronformat_file
-
-  Returns an array containing lines from the scantron format file for
-  the domain of the course.
-
-  If a url for a custom.tab file is listed in domain's configuration.db, 
-  lines are from this file.
-
-  Otherwise, if a default.tab has been published in RES space by the 
-  domainconfig user, lines are from this file.
-
-  Otherwise, fall back to getting lines from the legacy file on the
-  local server:  /home/httpd/lonTabs/default_scantronformat.tab    
-
-=cut
-
-sub get_scantronformat_file {
-    my $cdom= $env{'course.'.$env{'request.course.id'}.'.domain'};
-    my %domconfig = &Apache::lonnet::get_dom('configuration',['scantron'],$cdom);
-    my $gottab = 0;
-    my @lines;
-    if (ref($domconfig{'scantron'}) eq 'HASH') {
-        if ($domconfig{'scantron'}{'scantronformat'} ne '') {
-            my $formatfile = &Apache::lonnet::getfile($Apache::lonnet::perlvar{'lonDocRoot'}.$domconfig{'scantron'}{'scantronformat'});
-            if ($formatfile ne '-1') {
-                @lines = split("\n",$formatfile,-1);
-                $gottab = 1;
-            }
-        }
-    }
-    if (!$gottab) {
-        my $confname = $cdom.'-domainconfig';
-        my $default = $Apache::lonnet::perlvar{'lonDocRoot'}.'/res/'.$cdom.'/'.$confname.'/default.tab';
-        my $formatfile =  &Apache::lonnet::getfile($default);
-        if ($formatfile ne '-1') {
-            @lines = split("\n",$formatfile,-1);
-            $gottab = 1;
-        }
-    }
-    if (!$gottab) {
-        my @domains = &Apache::lonnet::current_machine_domains();
-        if (grep(/^\Q$cdom\E$/,@domains)) {
-            my $fh=Apache::File->new($Apache::lonnet::perlvar{'lonTabDir'}.'/scantronformat.tab');
-            @lines = <$fh>;
-            close($fh);
-        } else {
-            my $fh=Apache::File->new($Apache::lonnet::perlvar{'lonTabDir'}.'/default_scantronformat.tab');
-            @lines = <$fh>;
-            close($fh);
-        }
-    }
-    return @lines;
-}
-
 =pod 
 
 =item scantron_CODElist
@@ -5430,44 +5901,56 @@ sub scantron_selectphase {
 	# Chunk of form to prompt for a scantron file upload.
 
         $r->print('
-    <br />
-    '.&Apache::loncommon::start_data_table('LC_scantron_action').'
-       '.&Apache::loncommon::start_data_table_header_row().'
-            <th>
-              &nbsp;'.&mt('Specify a bubblesheet data file to upload.').'
-            </th>
-       '.&Apache::loncommon::end_data_table_header_row().'
-       '.&Apache::loncommon::start_data_table_row().'
-            <td>
-');
+    <br />');
     my $default_form_data=&defaultFormData($symb);
     my $cdom= $env{'course.'.$env{'request.course.id'}.'.domain'};
     my $cnum= $env{'course.'.$env{'request.course.id'}.'.num'};
+    my $alertmsg = &mt('Please use the browse button to select a file from your local directory.');
+    &js_escape(\$alertmsg);
+    my ($formatoptions,$formattitle,$formatjs) = &scantron_upload_dataformat($cdom);
     $r->print(&Apache::lonhtmlcommon::scripttag('
     function checkUpload(formname) {
 	if (formname.upfile.value == "") {
-	    alert("'.&mt('Please use the browse button to select a file from your local directory.').'");
+	    alert("'.$alertmsg.'");
 	    return false;
 	}
 	formname.submit();
-    }'));
+    }'."\n".$formatjs));
     $r->print('
               <form enctype="multipart/form-data" action="/adm/grades" name="rules" method="post">
                 '.$default_form_data.'
                 <input name="courseid" type="hidden" value="'.$cnum.'" />
                 <input name="domainid" type="hidden" value="'.$cdom.'" />
                 <input name="command" value="scantronupload_save" type="hidden" />
-                '.&mt('File to upload: [_1]','<input type="file" name="upfile" size="50" />').'
-                <br />
-                <input type="button" onclick="javascript:checkUpload(this.form);" value="'.&mt('Upload Bubblesheet Data').'" />
-              </form>
-');
+              '.&Apache::loncommon::start_data_table('LC_scantron_action').'
+              '.&Apache::loncommon::start_data_table_header_row().'
+                <th>
+                &nbsp;'.&mt('Specify a bubblesheet data file to upload.').'
+                </th>
+              '.&Apache::loncommon::end_data_table_header_row().'
+              '.&Apache::loncommon::start_data_table_row().'
+            <td>
+                '.&mt('File to upload: [_1]','<input type="file" name="upfile" size="50" />').'<br />'."\n");
+    if ($formatoptions) {
+        $r->print('</td>
+                 '.&Apache::loncommon::end_data_table_row().'
+                 '.&Apache::loncommon::start_data_table_row().'
+                 <td>'.$formattitle.('&nbsp;'x2).$formatoptions.'
+                 </td>
+                 '.&Apache::loncommon::end_data_table_row().'
+                 '.&Apache::loncommon::start_data_table_row().'
+                 <td>'
+        );
+    } else {
+        $r->print(' <br />');
+    }
+    $r->print('<input type="button" onclick="javascript:checkUpload(this.form);" value="'.&mt('Upload Bubblesheet Data').'" />
+              </td>
+             '.&Apache::loncommon::end_data_table_row().'
+             '.&Apache::loncommon::end_data_table().'
+             </form>'
+    );
 
-        $r->print('
-            </td>
-       '.&Apache::loncommon::end_data_table_row().'
-       '.&Apache::loncommon::end_data_table().'
-');
     }
 
     # Chunk of form to prompt for a file to grade and how:
@@ -5580,104 +6063,14 @@ sub scantron_selectphase {
     return;
 }
 
-=pod
-
-=item get_scantron_config
-
-   Parse and return the scantron configuration line selected as a
-   hash of configuration file fields.
-
- Arguments:
-    which - the name of the configuration to parse from the file.
-
-
- Returns:
-            If the named configuration is not in the file, an empty
-            hash is returned.
-    a hash with the fields
-      name         - internal name for the this configuration setup
-      description  - text to display to operator that describes this config
-      CODElocation - if 0 or the string 'none'
-                          - no CODE exists for this config
-                     if -1 || the string 'letter'
-                          - a CODE exists for this config and is
-                            a string of letters
-                     Unsupported value (but planned for future support)
-                          if a positive integer
-                               - The CODE exists as the first n items from
-                                 the question section of the form
-                          if the string 'number'
-                               - The CODE exists for this config and is
-                                 a string of numbers
-      CODEstart   - (only matter if a CODE exists) column in the line where
-                     the CODE starts
-      CODElength  - length of the CODE
-      IDstart     - column where the student/employee ID starts
-      IDlength    - length of the student/employee ID info
-      Qstart      - column where the information from the bubbled
-                    'questions' start
-      Qlength     - number of columns comprising a single bubble line from
-                    the sheet. (usually either 1 or 10)
-      Qon         - either a single character representing the character used
-                    to signal a bubble was chosen in the positional setup, or
-                    the string 'letter' if the letter of the chosen bubble is
-                    in the final, or 'number' if a number representing the
-                    chosen bubble is in the file (1->A 0->J)
-      Qoff        - the character used to represent that a bubble was
-                    left blank
-      PaperID     - if the scanning process generates a unique number for each
-                    sheet scanned the column that this ID number starts in
-      PaperIDlength - number of columns that comprise the unique ID number
-                      for the sheet of paper
-      FirstName   - column that the first name starts in
-      FirstNameLength - number of columns that the first name spans
- 
-      LastName    - column that the last name starts in
-      LastNameLength - number of columns that the last name spans
-      BubblesPerRow - number of bubbles available in each row used to 
-                      bubble an answer. (If not specified, 10 assumed).
-
-=cut
-
-sub get_scantron_config {
-    my ($which) = @_;
-    my @lines = &get_scantronformat_file();
-    my %config;
-    #FIXME probably should move to XML it has already gotten a bit much now
-    foreach my $line (@lines) {
-	my ($name,$descrip)=split(/:/,$line);
-	if ($name ne $which ) { next; }
-	chomp($line);
-	my @config=split(/:/,$line);
-	$config{'name'}=$config[0];
-	$config{'description'}=$config[1];
-	$config{'CODElocation'}=$config[2];
-	$config{'CODEstart'}=$config[3];
-	$config{'CODElength'}=$config[4];
-	$config{'IDstart'}=$config[5];
-	$config{'IDlength'}=$config[6];
-	$config{'Qstart'}=$config[7];
- 	$config{'Qlength'}=$config[8];
-	$config{'Qoff'}=$config[9];
-	$config{'Qon'}=$config[10];
-	$config{'PaperID'}=$config[11];
-	$config{'PaperIDlength'}=$config[12];
-	$config{'FirstName'}=$config[13];
-	$config{'FirstNamelength'}=$config[14];
-	$config{'LastName'}=$config[15];
-	$config{'LastNamelength'}=$config[16];
-        $config{'BubblesPerRow'}=$config[17];
-	last;
-    }
-    return %config;
-}
-
 =pod 
 
 =item username_to_idmap
 
     creates a hash keyed by student/employee ID with values of the corresponding
-    student username:domain.
+    student username:domain. If a single ID occurs for more than one student,
+    the status of the student is checked, and if Active, the value in the hash
+    will be set to the Active student.
 
   Arguments:
 
@@ -5695,8 +6088,17 @@ sub username_to_idmap {
     my ($classlist)= @_;
     my %idmap;
     foreach my $student (keys(%$classlist)) {
-	$idmap{$classlist->{$student}->[&Apache::loncoursedata::CL_ID]}=
-	    $student;
+        my $id = $classlist->{$student}->[&Apache::loncoursedata::CL_ID];
+        unless ($id eq '') {
+            if (!exists($idmap{$id})) {
+                $idmap{$id} = $student;
+            } else {
+                my $status = $classlist->{$student}->[&Apache::loncoursedata::CL_STATUS];
+                if ($status eq 'Active') {
+                    $idmap{$id} = $student;
+                }
+            }
+        }
     }
     return %idmap;
 }
@@ -5708,7 +6110,7 @@ sub username_to_idmap {
    Process a requested correction to a scanline.
 
   Arguments:
-    $scantron_config   - hash from &get_scantron_config()
+    $scantron_config   - hash from &Apache::lonnet::get_scantron_config()
     $scan_data         - hash of correction information 
                           (see &scantron_getfile())
     $line              - existing scanline
@@ -5868,12 +6270,12 @@ sub digits_to_letters {
 
 =item scantron_parse_scanline
 
-  Decodes a scanline from the selected scantron file
+  Decodes a scanline from the selected bubblesheet file
 
  Arguments:
-    line             - The text of the scantron file line to process
+    line             - The text of the bubblesheet file line to process
     whichline        - Line number
-    scantron_config  - Hash describing the format of the scantron lines.
+    scantron_config  - Hash describing the format of the bubblesheet lines.
     scan_data        - Hash of extra information about the scanline
                        (see scantron_getfile for more information)
     just_header      - True if should not process question answers but only
@@ -6391,7 +6793,7 @@ sub scantron_filter {
 
 sub scantron_process_corrections {
     my ($r) = @_;
-    my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
+    my %scantron_config=&Apache::lonnet::get_scantron_config($env{'form.scantron_format'});
     my ($scanlines,$scan_data)=&scantron_getfile();
     my $classlist=&Apache::loncoursedata::get_classlist();
     my $which=$env{'form.scantron_line'};
@@ -6440,7 +6842,11 @@ sub scantron_process_corrections {
 	}
     }
     if ($err) {
-	$r->print("<span class=\"LC_warning\">Unable to accept last correction, an error occurred :$errmsg:</span>");
+        $r->print(
+            '<p class="LC_error">'
+           .&mt('Unable to accept last correction, an error occurred: [_1]',
+                $errmsg)
+           .'</p>');
     } else {
 	&scantron_put_line($scanlines,$scan_data,$which,$line,$skip);
 	&scantron_putfile($scanlines,$scan_data);
@@ -6556,13 +6962,13 @@ sub check_for_error {
 sub scantron_warning_screen {
     my ($button_text,$symb)=@_;
     my $title=&Apache::lonnet::gettitle($env{'form.selectpage'});
-    my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
+    my %scantron_config=&Apache::lonnet::get_scantron_config($env{'form.scantron_format'});
     my $CODElist;
     if ($scantron_config{'CODElocation'} &&
 	$scantron_config{'CODEstart'} &&
 	$scantron_config{'CODElength'}) {
 	$CODElist=$env{'form.scantron_CODElist'};
-	if ($env{'form.scantron_CODElist'} eq '') { $CODElist='<span class="LC_warning">None</span>'; }
+	if ($env{'form.scantron_CODElist'} eq '') { $CODElist='<span class="LC_warning">'.&mt('None').'</span>'; }
 	$CODElist=
 	    '<tr><td><b>'.&mt('List of CODES to validate against:').'</b></td><td><tt>'.
 	    $env{'form.scantron_CODElist'}.'</tt></td></tr>';
@@ -6576,7 +6982,7 @@ sub scantron_warning_screen {
     return ('
 <p>
 <span class="LC_warning">
-'.&mt('Please double check the information below before clicking on \'[_1]\'',&mt($button_text)).'</span>
+'.&mt("Please double check the information below before clicking on '[_1]'",&mt($button_text)).'</span>
 </p>
 <table>
 <tr><td><b>'.&mt('Sequence to be Graded:').'</b></td><td>'.$title.'</td></tr>
@@ -6688,7 +7094,7 @@ sub scantron_validate_file {
     if (!$symb) {return '';}
     my $default_form_data=&defaultFormData($symb);
     
-    # do the detection of only doing skipped records first befroe we delete
+    # do the detection of only doing skipped records first before we delete
     # them when doing the corrections reset
     if ($env{'form.scantron_options_redo'} ne 'redo_skipped_ready') {
 	&reset_skipping_status();
@@ -6712,7 +7118,7 @@ sub scantron_validate_file {
     #get the student pick code ready
     $r->print(&Apache::loncommon::studentbrowser_javascript());
     my $nav_error;
-    my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
+    my %scantron_config=&Apache::lonnet::get_scantron_config($env{'form.scantron_format'});
     my $max_bubble=&scantron_get_maxbubble(\$nav_error,\%scantron_config);
     if ($nav_error) {
         $r->print(&navmap_errormsg());
@@ -7172,7 +7578,7 @@ sub scantron_validate_ID {
     my %idmap=&username_to_idmap($classlist);
 
     #get scantron line setup
-    my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
+    my %scantron_config=&Apache::lonnet::get_scantron_config($env{'form.scantron_format'});
     my ($scanlines,$scan_data)=&scantron_getfile();
 
     my $nav_error;
@@ -7418,6 +7824,7 @@ sub verify_bubbles_checked {
     my (@ansnums) = @_;
     my $ansnumstr = join('","',@ansnums);
     my $warning = &mt("A bubble or 'No bubble' selection has not been made for one or more lines.");
+    &js_escape(\$warning);
     my $output = &Apache::lonhtmlcommon::scripttag((<<ENDSCRIPT));
 function verify_bubble_radio(form) {
     var ansnumArray = new Array ("$ansnumstr");
@@ -7574,7 +7981,7 @@ sub prompt_for_corrections {
             }
         } else {
             $responsenum = $question-1;
-            $first = $first_bubble_line{$responsenum} + 1;
+            $first = $first_bubble_line{$responsenum};
         }
         $current_line = $first + 1 ;
         my @subans = split(/,/,$subdivided_bubble_lines{$responsenum});
@@ -7641,7 +8048,7 @@ sub prompt_for_corrections {
 
  Arguments:
     $r           - Apache request object
-    $scan_config - hash from &get_scantron_config()
+    $scan_config - hash from &Apache::lonnet::get_scantron_config()
     $line        - Number of the line being displayed.
     $questionnum - Question number (may include subquestion)
     $error       - Type of error.
@@ -7805,7 +8212,7 @@ sub get_codes {
 
 sub scantron_validate_CODE {
     my ($r,$currentphase) = @_;
-    my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
+    my %scantron_config=&Apache::lonnet::get_scantron_config($env{'form.scantron_format'});
     if ($scantron_config{'CODElocation'} &&
 	$scantron_config{'CODEstart'} &&
 	$scantron_config{'CODElength'}) {
@@ -7879,7 +8286,7 @@ sub scantron_validate_doublebubble {
         &Apache::lonnet::decode_symb($env{'form.selectpage'});
 
     #get scantron line setup
-    my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
+    my %scantron_config=&Apache::lonnet::get_scantron_config($env{'form.scantron_format'});
     my ($scanlines,$scan_data)=&scantron_getfile();
 
     my $navmap = Apache::lonnavmaps::navmap->new();
@@ -8061,7 +8468,7 @@ sub scantron_validate_missingbubbles {
         &Apache::lonnet::decode_symb($env{'form.selectpage'});
 
     #get scantron line setup
-    my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
+    my %scantron_config=&Apache::lonnet::get_scantron_config($env{'form.scantron_format'});
     my ($scanlines,$scan_data)=&scantron_getfile();
 
     my $navmap = Apache::lonnavmaps::navmap->new();
@@ -8190,12 +8597,12 @@ sub hand_bubble_option {
         }
     }
     if ($needs_hand_bubbles) {
-        my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
+        my %scantron_config=&Apache::lonnet::get_scantron_config($env{'form.scantron_format'});
         my $bubbles_per_row = &bubblesheet_bubbles_per_row(\%scantron_config);
         return &mt('The sequence to be graded contains response types which are handgraded.').'<p>'.
                &mt('If you have already graded these by bubbling sheets to indicate points awarded, [_1]what point value is assigned to a filled last bubble in each row?','<br />').
                '<label><input type="radio" name="scantron_lastbubblepoints" value="'.$bubbles_per_row.'" checked="checked" />'.&mt('[quant,_1,point]',$bubbles_per_row).'</label>&nbsp;'.&mt('or').'&nbsp;'.
-               '<label><input type="radio" name="scantron_lastbubblepoints" value="0"/>0 points</label></p>';
+               '<label><input type="radio" name="scantron_lastbubblepoints" value="0" />'.&mt('0 points').'</label></p>';
     }
     return;
 }
@@ -8209,7 +8616,7 @@ sub scantron_process_students {
     }
     my $default_form_data=&defaultFormData($symb);
 
-    my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
+    my %scantron_config=&Apache::lonnet::get_scantron_config($env{'form.scantron_format'});
     my $bubbles_per_row = &bubblesheet_bubbles_per_row(\%scantron_config); 
     my ($scanlines,$scan_data)=&scantron_getfile();
     my $classlist=&Apache::loncoursedata::get_classlist();
@@ -8277,7 +8684,7 @@ SCANTRONFORM
 	return '';		# Dunno why the other returns return '' rather than just returning.
     }
 
-    my %lettdig = &letter_to_digits();
+    my %lettdig = &Apache::lonnet::letter_to_digits();
     my $numletts = scalar(keys(%lettdig));
     my %orderedforcode;
 
@@ -8339,9 +8746,14 @@ SCANTRONFORM
             }
             if ((exists($grader_randomlists_by_symb{$ressymb})) ||
                 (ref($grader_partids_by_symb{$ressymb}) ne 'ARRAY')) {
+                my $currcode;
+                if (exists($grader_randomlists_by_symb{$ressymb})) {
+                    $currcode = $scancode;
+                }
                 my ($analysis,$parts) =
                     &scantron_partids_tograde($resource,$env{'request.course.id'},
-                                              $uname,$udom,undef,$bubbles_per_row);
+                                              $uname,$udom,undef,$bubbles_per_row,
+                                              $currcode);
                 $partids_by_symb{$ressymb} = $parts;
             } else {
                 $partids_by_symb{$ressymb} = $grader_partids_by_symb{$ressymb};
@@ -8444,11 +8856,11 @@ SCANTRONFORM
                               &Apache::loncommon::end_data_table_header_row()."\n".
                               &Apache::loncommon::start_data_table_row().
                               '<td>'.&mt('Bubblesheet').'</td>'.
-                              '<td><span class="LC_nobreak"><tt>'.$studentdata.'</tt></span></td>'.
+                              '<td><span class="LC_nobreak" style="white-space: pre;"><tt>'.$studentdata.'</tt></span></td>'.
                               &Apache::loncommon::end_data_table_row().
                               &Apache::loncommon::start_data_table_row().
                               '<td>'.&mt('Stored submissions').'</td>'.
-                              '<td><span class="LC_nobreak"><tt>'.$studentrecord.'</tt></span></td>'."\n".
+                              '<td><span class="LC_nobreak" style="white-space: pre;"><tt>'.$studentrecord.'</tt></span></td>'."\n".
                               &Apache::loncommon::end_data_table_row().
                               &Apache::loncommon::end_data_table().'</p>');
                 } else {
@@ -8599,6 +9011,7 @@ sub grade_student_bubbles {
 sub scantron_upload_scantron_data {
     my ($r,$symb)=@_;
     my $dom = $env{'request.role.domain'};
+    my ($formatoptions,$formattitle,$formatjs) = &scantron_upload_dataformat($dom);
     my $domdesc = &Apache::lonnet::domain($dom,'description');
     $r->print(&Apache::loncommon::coursebrowser_javascript($dom));
     my $select_link=&Apache::loncommon::selectcourse_link('rules','courseid',
@@ -8608,7 +9021,9 @@ sub scantron_upload_scantron_data {
                        ('&nbsp'x2).&mt('(shows course personnel)'); 
     my $default_form_data=&defaultFormData($symb);
     my $nofile_alert = &mt('Please use the browse button to select a file from your local directory.');
+    &js_escape(\$nofile_alert);
     my $nocourseid_alert = &mt("Please use the 'Select Course' link to open a separate window where you can search for a course to which a file can be uploaded.");
+    &js_escape(\$nocourseid_alert);
     $r->print(&Apache::lonhtmlcommon::scripttag('
     function checkUpload(formname) {
 	if (formname.upfile.value == "") {
@@ -8636,6 +9051,7 @@ sub scantron_upload_scantron_data {
         return;
     }
 
+    '.$formatjs.'
 '));
     $r->print('
 <h3>'.&mt('Send bubblesheet data to a course').'</h3>
@@ -8651,7 +9067,12 @@ sub scantron_upload_scantron_data {
   &Apache::lonhtmlcommon::row_closure().
   &Apache::lonhtmlcommon::row_title(&mt('Domain')).
   '<input name="domainid" type="hidden" />'.$domdesc.
-  &Apache::lonhtmlcommon::row_closure().
+  &Apache::lonhtmlcommon::row_closure());
+    if ($formatoptions) {
+        $r->print(&Apache::lonhtmlcommon::row_title($formattitle).$formatoptions.
+                  &Apache::lonhtmlcommon::row_closure());
+    }
+    $r->print(
   &Apache::lonhtmlcommon::row_title(&mt('File to upload')).
   '<input type="file" name="upfile" size="50" />'.
   &Apache::lonhtmlcommon::row_closure(1).
@@ -8664,6 +9085,84 @@ sub scantron_upload_scantron_data {
     return '';
 }
 
+sub scantron_upload_dataformat {
+    my ($dom) = @_;
+    my ($formatoptions,$formattitle,$formatjs);
+    $formatjs = <<'END';
+function toggleScantab(form) {
+   return;
+}
+END
+    my %domconfig = &Apache::lonnet::get_dom('configuration',['scantron'],$dom);
+    if (ref($domconfig{'scantron'}) eq 'HASH') {
+        if (ref($domconfig{'scantron'}{'config'}) eq 'HASH') {
+            if (keys(%{$domconfig{'scantron'}{'config'}}) > 1) {
+                if (($domconfig{'scantron'}{'config'}{'dat'}) &&
+                    (ref($domconfig{'scantron'}{'config'}{'csv'}) eq 'HASH')) {
+                    if (ref($domconfig{'scantron'}{'config'}{'csv'}{'fields'}) eq 'HASH') {  
+                        if (keys(%{$domconfig{'scantron'}{'config'}{'csv'}{'fields'}})) {
+                            my ($onclick,$formatextra,$singleline);
+                            my @lines = &Apache::lonnet::get_scantronformat_file();
+                            my $count = 0;
+                            foreach my $line (@lines) {
+                                next if ($line =~ /^#/);
+                                $singleline = $line;
+                                $count ++;
+                            }
+                            if ($count > 1) {
+                                $formatextra = '<div style="display:none" id="bubbletype">'.
+                                               '<span class="LC_nobreak">'.
+                                               &mt('Bubblesheet type:').'&nbsp;'.
+                                               &scantron_scantab().'</span></div>';
+                                $onclick = ' onclick="toggleScantab(this.form);"';
+                                $formatjs = <<"END";
+function toggleScantab(form) {
+    var divid = 'bubbletype';
+    if (document.getElementById(divid)) {
+        var radioname = 'fileformat';
+        var num = form.elements[radioname].length;
+        if (num) {
+            for (var i=0; i<num; i++) {
+                if (form.elements[radioname][i].checked) {
+                    var chosen = form.elements[radioname][i].value;
+                    if (chosen == 'dat') {
+                        document.getElementById(divid).style.display = 'none';
+                    } else if (chosen == 'csv') {
+                        document.getElementById(divid).style.display = 'block';
+                    }
+                }
+            }
+        }
+    }
+    return;
+}
+
+END
+                            } elsif ($count == 1) {
+                                my $formatname = (split(/:/,$singleline,2))[0];
+                                $formatextra = '<input type="hidden" name="scantron_format" value="'.$formatname.'" />';
+                            }
+                            $formattitle = &mt('File format');
+                            $formatoptions = '<label><input name="fileformat" type="radio" value="dat" checked="checked"'.$onclick.' />'.
+                                             &mt('Plain Text (no delimiters)').
+                                             '</label>'.('&nbsp;'x2).
+                                             '<label><input name="fileformat" type="radio" value="csv"'.$onclick.' />'.
+                                             &mt('Comma separated values').'</label>'.$formatextra;
+                        }
+                    }
+                }
+            } elsif (keys(%{$domconfig{'scantron'}{'config'}}) == 1) {
+                if (ref($domconfig{'scantron'}{'config'}{'csv'}{'fields'}) eq 'HASH') {
+                    if (keys(%{$domconfig{'scantron'}{'config'}{'csv'}{'fields'}})) {
+                        $formattitle = &mt('Bubblesheet type');
+                        $formatoptions = &scantron_scantab();
+                    }
+                }
+            }
+        }
+    }
+    return ($formatoptions,$formattitle,$formatjs);
+}
 
 sub scantron_upload_scantron_data_save {
     my($r,$symb)=@_;
@@ -8683,23 +9182,60 @@ sub scantron_upload_scantron_data_save {
     }
     my %coursedata=&Apache::lonnet::coursedescription($env{'form.domainid'}.'_'.$env{'form.courseid'});
     my $uploadedfile;
-    $r->print('<h3>'.&mt("Uploading file to [_1]",$coursedata{'description'}).'</h3>');
+    $r->print('<p>'.&mt('Uploading file to [_1]','"'.$coursedata{'description'}.'"').'</p>');
     if (length($env{'form.upfile'}) < 2) {
-        $r->print(&mt('[_1]Error:[_2] The file you attempted to upload, [_3] contained no information. Please check that you entered the correct filename.','<span class="LC_error">','</span>','<span class="LC_filename">'.&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"').'</span>'));
-    } else {
-        my $result = 
-            &Apache::lonnet::userfileupload('upfile','','scantron','','','',
+        $r->print(
+            &Apache::lonhtmlcommon::confirm_success(
+                &mt('The file: [_1] you attempted to upload contained no information. Please check that you entered the correct filename.',
+                        '<span class="LC_filename">'.&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"').'</span>'),1));
+    } else {
+        my %domconfig = &Apache::lonnet::get_dom('configuration',['scantron'],$env{'form.domainid'});
+        my $parser;
+        if (ref($domconfig{'scantron'}) eq 'HASH') {
+            if (ref($domconfig{'scantron'}{'config'}) eq 'HASH') {
+                my $is_csv;
+                my @possibles = keys(%{$domconfig{'scantron'}{'config'}});
+                if (@possibles > 1) {
+                    if ($env{'form.fileformat'} eq 'csv') {
+                        if (ref($domconfig{'scantron'}{'config'}{'csv'}) eq 'HASH') {
+                            if (ref($domconfig{'scantron'}{'config'}{'csv'}{'fields'}) eq 'HASH') {
+                                if (keys(%{$domconfig{'scantron'}{'config'}{'csv'}{'fields'}}) > 1) {
+                                    $is_csv = 1;
+                                }
+                            }
+                        }
+                    }
+                } elsif (@possibles == 1) {
+                    if (ref($domconfig{'scantron'}{'config'}{'csv'}) eq 'HASH') {
+                        if (ref($domconfig{'scantron'}{'config'}{'csv'}{'fields'}) eq 'HASH') {
+                            if (keys(%{$domconfig{'scantron'}{'config'}{'csv'}{'fields'}}) > 1) {
+                                $is_csv = 1;
+                            }
+                        }
+                    }
+                }
+                if ($is_csv) {
+                   $parser = $domconfig{'scantron'}{'config'}{'csv'};
+                }
+            }
+        }
+        my $result =
+            &Apache::lonnet::userfileupload('upfile','scantron','scantron',$parser,'','',
                                             $env{'form.courseid'},$env{'form.domainid'});
-	if ($result =~ m{^/uploaded/}) {
-	    $r->print(&mt('[_1]Success:[_2] Successfully uploaded [_3] bytes of data into location: [_4]',
-                          '<span class="LC_success">','</span>',(length($env{'form.upfile'})-1),
-			  '<span class="LC_filename">'.$result.'</span>'));
+        if ($result =~ m{^/uploaded/}) {
+            $r->print(
+                &Apache::lonhtmlcommon::confirm_success(&mt('Upload successful')).'<br />'.
+                &mt('Uploaded [_1] bytes of data into location: [_2]',
+                        (length($env{'form.upfile'})-1),
+                        '<span class="LC_filename">'.$result.'</span>'));
             ($uploadedfile) = ($result =~ m{/([^/]+)$});
             $r->print(&validate_uploaded_scantron_file($env{'form.domainid'},
                                                        $env{'form.courseid'},$uploadedfile));
-	} else {
-	    $r->print(&mt('[_1]Error:[_2] An error ([_3]) occurred when attempting to upload the file, [_4]',
-                          '<span class="LC_error">','</span>',$result,
+        } else {
+            $r->print(
+                &Apache::lonhtmlcommon::confirm_success(&mt('Upload failed'),1).'<br />'.
+                    &mt('An error ([_1]) occurred when attempting to upload the file: [_2]',
+                          $result,
 			  '<span class="LC_filename">'.&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"').'</span>'));
 	}
     }
@@ -8721,7 +9257,7 @@ sub validate_uploaded_scantron_file {
     my $output;
     if (@lines) {
         my (%counts,$max_match_format);
-        my ($max_match_count,$max_match_pct) = (0,0);
+        my ($found_match_count,$max_match_count,$max_match_pct) = (0,0,0);
         my $classlist = &Apache::loncoursedata::get_classlist($cdom,$cname);
         my %idmap = &username_to_idmap($classlist);
         foreach my $key (keys(%idmap)) {
@@ -8729,7 +9265,7 @@ sub validate_uploaded_scantron_file {
             $idmap{$lckey} = $idmap{$key};
         }
         my %unique_formats;
-        my @formatlines = &get_scantronformat_file();
+        my @formatlines = &Apache::lonnet::get_scantronformat_file();
         foreach my $line (@formatlines) {
             chomp($line);
             my @config = split(/:/,$line);
@@ -8764,6 +9300,7 @@ sub validate_uploaded_scantron_file {
                 if (($max_match_format eq '') || ($percent_match > $max_match_pct)) {
                     $max_match_pct = $percent_match;
                     $max_match_format = $key;
+                    $found_match_count = $counts{$key}{'found'};
                     $max_match_count = $counts{$key}{'total'};
                 }
             }
@@ -8782,17 +9319,40 @@ sub validate_uploaded_scantron_file {
                 }
             }
             my $showpct = sprintf("%.0f",$max_match_pct).'%';
-            $output .= '<br />'.&mt('Comparison of student IDs in the uploaded file with the course roster found matches for [_1] of the [_2] entries in the file (for the format defined for [_3]).','<b>'.$showpct.'</b>','<b>'.$max_match_count.'</b>',$format_descs).
-                       '<br />'.&mt('A low percentage of matches results from one of the following:').'<ul>'.
-                       '<li>'.&mt('The file was uploaded to the wrong course').'</li>'.
-                       '<li>'.&mt('The data are not in the format expected for the domain: [_1]',
-                                  '<i>'.$cdom.'</i>').'</li>'.
-                       '<li>'.&mt('Students did not bubble their IDs, or mis-bubbled them').'</li>'.
-                       '<li>'.&mt('The course roster is not up to date').'</li>'.
-                       '</ul>';
+            $output .= '<br />';
+            if ($found_match_count == $max_match_count) {
+                # 100% matching entries
+                $output .= &Apache::lonhtmlcommon::confirm_success(
+                     &mt('Comparison of student IDs: [_1] matching ([quant,_2,entry,entries])',
+                            '<b>'.$showpct.'</b>',$found_match_count)).'<br />'.
+                &mt('Comparison of student IDs in the uploaded file with'.
+                    ' the course roster found matches for [_1] of the [_2] entries'.
+                    ' in the file (for the format defined for [_3]).',
+                        '<b>'.$showpct.'</b>','<b>'.$max_match_count.'</b>',$format_descs);
+            } else {
+                # Not all entries matching? -> Show warning and additional info
+                $output .=
+                    &Apache::lonhtmlcommon::confirm_success(
+                        &mt('Comparison of student IDs: [_1] matching ([_2]/[quant,_3,entry,entries])',
+                                '<b>'.$showpct.'</b>',$found_match_count,$max_match_count).'<br />'.
+                        &mt('Not all entries could be matched!'),1).'<br />'.
+                    &mt('Comparison of student IDs in the uploaded file with'.
+                        ' the course roster found matches for [_1] of the [_2] entries'.
+                        ' in the file (for the format defined for [_3]).',
+                            '<b>'.$showpct.'</b>','<b>'.$max_match_count.'</b>',$format_descs).
+                    '<p class="LC_info">'.
+                    &mt('A low percentage of matches results from one of the following:').
+                    '</p><ul>'.
+                    '<li>'.&mt('The file was uploaded to the wrong course.').'</li>'.
+                    '<li>'.&mt('The data is not in the format expected for the domain: [_1]',
+                               '<i>'.$cdom.'</i>').'</li>'.
+                    '<li>'.&mt('Students did not bubble their IDs, or mis-bubbled them').'</li>'.
+                    '<li>'.&mt('The course roster is not up to date.').'</li>'.
+                    '</ul>';
+            }
         }
     } else {
-        $output = '<span class="LC_warning">'.&mt('Uploaded file contained no data').'</span>';
+        $output = '<p class="LC_warning">'.&mt('Uploaded file contained no data').'</p>';
     }
     return $output;
 }
@@ -8827,7 +9387,7 @@ sub scantron_download_scantron_data {
     &Apache::lonnet::allowuploaded('/adm/grades',$skipped);
     $r->print('
     <p>
-	'.&mt('[_1]Original[_2] file as uploaded by the scantron office.',
+	'.&mt('[_1]Original[_2] file as uploaded by the bubblesheet scanning office.',
 	      '<a href="'.$orig.'">','</a>').'
     </p>
     <p>
@@ -8846,14 +9406,14 @@ sub checkscantron_results {
     my ($r,$symb) = @_;
     if (!$symb) {return '';}
     my $cid = $env{'request.course.id'};
-    my %lettdig = &letter_to_digits();
+    my %lettdig = &Apache::lonnet::letter_to_digits();
     my $numletts = scalar(keys(%lettdig));
     my $cnum = $env{'course.'.$cid.'.num'};
     my $cdom = $env{'course.'.$cid.'.domain'};
     my (undef, undef, $sequence) = &Apache::lonnet::decode_symb($env{'form.selectpage'});
     my %record;
     my %scantron_config =
-        &Apache::grades::get_scantron_config($env{'form.scantron_format'});
+        &Apache::lonnet::get_scantron_config($env{'form.scantron_format'});
     my $bubbles_per_row = &bubblesheet_bubbles_per_row(\%scantron_config);
     my ($scanlines,$scan_data)=&Apache::grades::scantron_getfile();
     my $classlist=&Apache::loncoursedata::get_classlist();
@@ -8888,7 +9448,7 @@ sub checkscantron_results {
 
     my $count=&get_todo_count($scanlines,$scan_data);
     my %prog_state=&Apache::lonhtmlcommon::Create_PrgWin($r,$count);
-    my ($username,$domain,$started,%ordered);
+    my ($username,$domain,$started);
     &scantron_get_maxbubble(\$nav_error,\%scantron_config); # Need the bubble lines array to parse.
     if ($nav_error) {
         $r->print(&navmap_errormsg());
@@ -8963,10 +9523,14 @@ sub checkscantron_results {
             my $ressymb = $resource->symb();
             if ((exists($grader_randomlists_by_symb{$ressymb})) ||
                 (ref($grader_partids_by_symb{$ressymb}) ne 'ARRAY')) {
+                my $currcode;
+                if (exists($grader_randomlists_by_symb{$ressymb})) {
+                    $currcode = $scancode;
+                }
                 (my $analysis,$parts) =
                     &scantron_partids_tograde($resource,$env{'request.course.id'},
                                               $username,$domain,undef,
-                                              $bubbles_per_row);
+                                              $bubbles_per_row,$currcode);
             } else {
                 $parts = $grader_partids_by_symb{$ressymb};
             }
@@ -8998,14 +9562,14 @@ sub checkscantron_results {
 '<td>'.&mt('Bubblesheet').'</td><td>'.$showscandata.'</td><td rowspan="2">'.$last.'</td><td rowspan="2">'.$pid.'</td>'."\n".
 '</tr>'."\n".
 '<tr class="'.$css_class.'">'."\n".
-'<td>Submissions</td><td>'.$showrecord.'</td></tr>'."\n";
+'<td>'.&mt('Submissions').'</td><td>'.$showrecord.'</td></tr>'."\n";
                     $passed ++;
                 } else {
                     my $css_class = ($failed % 2)?'LC_odd_row':'LC_even_row';
                     $badstudents .= '<tr class="'.$css_class.'"><td>'.&mt('Bubblesheet').'</td><td><span class="LC_nobreak">'.$scandata{$pid}.'</span></td><td rowspan="2">'.$last.'</td><td rowspan="2">'.$pid.'</td>'."\n".
 '</tr>'."\n".
 '<tr class="'.$css_class.'">'."\n".
-'<td>Submissions</td><td><span class="LC_nobreak">'.$record{$pid}.'</span></td>'."\n".
+'<td>'.&mt('Submissions').'</td><td><span class="LC_nobreak">'.$record{$pid}.'</span></td>'."\n".
 '</tr>'."\n";
                     $failed ++;
                 }
@@ -9173,22 +9737,6 @@ sub verify_scantron_grading {
     return ($counter,$record);
 }
 
-sub letter_to_digits {
-    my %lettdig = (
-                    A => 1,
-                    B => 2,
-                    C => 3,
-                    D => 4,
-                    E => 5,
-                    F => 6,
-                    G => 7,
-                    H => 8,
-                    I => 9,
-                    J => 0,
-                  );
-    return %lettdig;
-}
-
 
 #-------- end of section for handling grading scantron forms -------
 #
@@ -9338,12 +9886,13 @@ sub submit_options_table {
     my ($request,$symb) = @_;
     if (!$symb) {return '';}
     &commonJSfunctions($request);
+    my $is_tool = ($symb =~ /ext\.tool$/);
     my $result;
 
     $result.='<form action="/adm/grades" method="post" name="gradingMenu">'."\n".
         '<input type="hidden" name="symb"        value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n";
 
-    $result.=&selectfield(0).
+    $result.=&selectfield(1,$is_tool).
             '<input type="hidden" name="command" value="viewgrades" />
             <div>
               <input type="submit" value="'.&mt('Next').' &rarr;" />
@@ -9357,14 +9906,15 @@ sub submit_options_download {
     my ($request,$symb) = @_;
     if (!$symb) {return '';}
 
+    my $is_tool = ($symb =~ /ext\.tool$/);
     &commonJSfunctions($request);
 
     my $result='<form action="/adm/grades" method="post" name="gradingMenu">'."\n".
         '<input type="hidden" name="symb"        value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n";
     $result.='
 <h2>
-  '.&mt('Select Students for Which to Download Submissions').'
-</h2>'.&selectfield(1).'
+  '.&mt('Select Students for whom to Download Submissions').'
+</h2>'.&selectfield(1,$is_tool).'
                 <input type="hidden" name="command" value="downloadfileslink" /> 
               <input type="submit" value="'.&mt('Next').' &rarr;" />
             </div>
@@ -9380,12 +9930,13 @@ sub submit_options {
     my ($request,$symb) = @_;
     if (!$symb) {return '';}
 
+    my $is_tool = ($symb =~ /ext\.tool$/);
     &commonJSfunctions($request);
     my $result;
 
     $result.='<form action="/adm/grades" method="post" name="gradingMenu">'."\n".
 	'<input type="hidden" name="symb"        value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n";
-    $result.=&selectfield(1).'
+    $result.=&selectfield(1,$is_tool).'
                 <input type="hidden" name="command" value="submission" /> 
 	      <input type="submit" value="'.&mt('Next').' &rarr;" />
             </div>
@@ -9397,15 +9948,17 @@ sub submit_options {
 }
 
 sub selectfield {
-   my ($full)=@_;
-   my %options = 
-          (&Apache::lonlocal::texthash(
-             'yes'       => 'with submissions',
-             'queued'    => 'in grading queue',
-             'graded'    => 'with ungraded submissions',
-             'incorrect' => 'with incorrect submissions',
-             'all'       => 'with any status'),
-             'select_form_order' => ['yes','queued','graded','incorrect','all']);
+   my ($full,$is_tool)=@_;
+   my %options;
+   if ($is_tool) {
+       %options =
+           (&transtatus_options,
+            'select_form_order' => ['yes','incorrect','all']);
+   } else {
+       %options = 
+           (&substatus_options,
+            'select_form_order' => ['yes','queued','graded','incorrect','all']);
+   }
    my $result='<div class="LC_columnSection">
   
     <fieldset>
@@ -9429,10 +9982,14 @@ sub selectfield {
       '.&Apache::lonhtmlcommon::StatusOptions(undef,undef,5,undef,'mult').'
     </fieldset>';
     if ($full) {
-       $result.='
+        my $heading = &mt('Submission Status');
+        if ($is_tool) {
+            $heading = &mt('Transaction Status');
+        }
+        $result.='
     <fieldset>
       <legend>
-        '.&mt('Submission Status').'
+        '.$heading.'
       </legend>'.
        &Apache::loncommon::select_form('all','submitonly',\%options).
    '</fieldset>';
@@ -9441,6 +9998,24 @@ sub selectfield {
     return $result;
 }
 
+sub substatus_options {
+    return &Apache::lonlocal::texthash(
+                                      'yes'       => 'with submissions',
+                                      'queued'    => 'in grading queue',
+                                      'graded'    => 'with ungraded submissions',
+                                      'incorrect' => 'with incorrect submissions',
+                                      'all'       => 'with any status',
+                                      );
+}
+
+sub transtatus_options {
+    return &Apache::lonlocal::texthash(
+                                       'yes'       => 'with score transactions',
+                                       'incorrect' => 'with less than full credit',
+                                       'all'       => 'with any status',
+                                      );
+}
+
 sub reset_perm {
     undef(%perm);
 }
@@ -9707,16 +10282,18 @@ sub process_clicker_file {
 	    $number++;
 	}
         $result.="</p>\n";
-	if ($number==0) {
-	    $result.='<span class="LC_error">'.&mt('No IDs found to determine correct answer').'</span>';
-	    return $result;
-	}
+        if ($number==0) {
+            $result .=
+                 &Apache::lonhtmlcommon::confirm_success(
+                     &mt('No IDs found to determine correct answer'),1);
+            return $result;
+        }
     }
     if (length($env{'form.upfile'}) < 2) {
-        $result.=&mt('[_1] Error: [_2] The file you attempted to upload, [_3] contained no information. Please check that you entered the correct filename.',
-		     '<span class="LC_error">',
-		     '</span>',
-		     '<span class="LC_filename">'.&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"').'</span>');
+        $result .=
+            &Apache::lonhtmlcommon::confirm_success(
+                &mt('The file: [_1] you attempted to upload contained no information. Please check that you entered the correct filename.',
+                        '<span class="LC_filename">'.&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"').'</span>'),1);
         return $result;
     }
 
@@ -10052,13 +10629,21 @@ sub navmap_errormsg {
 }
 
 sub startpage {
-    my ($r,$symb,$crumbs,$onlyfolderflag,$nodisplayflag,$stuvcurrent,$stuvdisp,$nomenu,$js) = @_;
+    my ($r,$symb,$crumbs,$onlyfolderflag,$nodisplayflag,$stuvcurrent,$stuvdisp,$nomenu,$js,$onload) = @_;
+    my %args;
+    if ($onload) {
+         my %loaditems = (
+                        'onload' => $onload,
+                      );
+         $args{'add_entries'} = \%loaditems;
+    }
     if ($nomenu) {
-        $r->print(&Apache::loncommon::start_page("Student's Version",$js,{'only_body' => '1'}));
+        $args{'only_body'} = 1; 
+        $r->print(&Apache::loncommon::start_page("Student's Version",$js,\%args);
     } else {
         unshift(@$crumbs,{href=>&href_symb_cmd($symb,'gradingmenu'),text=>"Grading"});
-        $r->print(&Apache::loncommon::start_page('Grading',$js,
-                                                 {'bread_crumbs' => $crumbs}));
+        $args{'bread_crumbs'} = $crumbs;
+        $r->print(&Apache::loncommon::start_page('Grading',$js,\%args));
         &Apache::lonquickgrades::startGradeScreen($r,($env{'form.symb'}?'probgrading':'grading'));
     }
     unless ($nodisplayflag) {
@@ -10069,7 +10654,7 @@ sub startpage {
 sub select_problem {
     my ($r)=@_;
     $r->print('<h3>'.&mt('Select the problem or one of the problems you want to grade').'</h3><form action="/adm/grades">');
-    $r->print(&Apache::lonstathelpers::problem_selector('.',undef,1));
+    $r->print(&Apache::lonstathelpers::problem_selector('.',undef,1,undef,undef,undef,undef,1));
     $r->print('<input type="hidden" name="command" value="gradingmenu" />');
     $r->print('<input type="submit" value="'.&mt('Next').' &rarr;" /></form>');
 }
@@ -10242,7 +10827,8 @@ sub handler {
             &startpage($request,$symb,[{href=>'', text=>'Upload Scores'}],1,1);
 	    $request->print(&csvuploadassign($request,$symb));
 	} elsif ($command eq 'scantron_selectphase' && $perm{'mgr'}) {
-            &startpage($request,$symb,[{href=>'', text=>'Grade/Manage/Review Bubblesheets'}],1,1);
+            &startpage($request,$symb,[{href=>'', text=>'Grade/Manage/Review Bubblesheets'}],1,1,
+                       undef,undef,undef,undef,'toggleScantab(document.rules);');
 	    $request->print(&scantron_selectphase($request,undef,$symb));
  	} elsif ($command eq 'scantron_warning' && $perm{'mgr'}) {
             &startpage($request,$symb,[{href=>'', text=>'Grade/Manage/Review Bubblesheets'}],1,1);
@@ -10256,7 +10842,8 @@ sub handler {
  	} elsif ($command eq 'scantronupload' && 
  		 (&Apache::lonnet::allowed('usc',$env{'request.role.domain'})||
 		  &Apache::lonnet::allowed('usc',$env{'request.course.id'}))) {
-            &startpage($request,$symb,[{href=>'', text=>'Grade/Manage/Review Bubblesheets'}],1,1);
+            &startpage($request,$symb,[{href=>'', text=>'Grade/Manage/Review Bubblesheets'}],1,1,
+                       undef,undef,undef,undef,'toggleScantab(document.rules);');
  	    $request->print(&scantron_upload_scantron_data($request,$symb)); 
  	} elsif ($command eq 'scantronupload_save' &&
  		 (&Apache::lonnet::allowed('usc',$env{'request.role.domain'})||
@@ -10276,7 +10863,7 @@ sub handler {
          } elsif ($command eq 'downloadfileslink' && $perm{'vgr'}) {
             &startpage($request,$symb,
    [{href=>&href_symb_cmd($symb,'downloadfilesselect'), text=>'Select which submissions to download'},
-    {href=>'', text=>'Download submissions'}]);
+    {href=>'', text=>'Download submitted files'}]);
             &submit_download_link($request,$symb);
 	} elsif ($command) {
             &startpage($request,$symb,[{href=>'', text=>'Access denied'}]);
@@ -10314,7 +10901,7 @@ described at http://www.lon-capa.org.
 =head1 OVERVIEW
 
 Do an ssi with retries:
-While I'd love to factor out this with the vesrion in lonprintout,
+While I'd love to factor out this with the version in lonprintout,
 that would either require a data coupling between modules, which I refuse to perpetuate (there's quite enough of that already), or would require the invention of another infrastructure
 I'm not quite ready to invent (e.g. an ssi_with_retry object).
 
@@ -10325,11 +10912,11 @@ At least the logic that drives this has
 ssi_with_retries - Does the server side include of a resource.
                      if the ssi call returns an error we'll retry it up to
                      the number of times requested by the caller.
-                     If we still have a proble, no text is appended to the
+                     If we still have a problem, no text is appended to the
                      output and we set some global variables.
                      to indicate to the caller an SSI error occurred.  
                      All of this is supposed to deal with the issues described
-                     in LonCAPA BZ 5631 see:
+                     in LON-CAPA BZ 5631 see:
                      http://bugs.lon-capa.org/show_bug.cgi?id=5631
                      by informing the user that this happened.