--- loncom/homework/grades.pm	2005/08/12 22:14:12	1.279
+++ loncom/homework/grades.pm	2007/10/11 21:27:50	1.453
@@ -1,7 +1,7 @@
 # The LearningOnline Network with CAPA
 # The LON-CAPA Grading handler
 #
-# $Id: grades.pm,v 1.279 2005/08/12 22:14:12 albertel Exp $
+# $Id: grades.pm,v 1.453 2007/10/11 21:27:50 banghart Exp $
 #
 # Copyright Michigan State University Board of Trustees
 #
@@ -36,40 +36,114 @@ use Apache::lonhtmlcommon;
 use Apache::lonnavmaps;
 use Apache::lonhomework;
 use Apache::loncoursedata;
-use Apache::lonmsg qw(:user_normal_msg);
+use Apache::lonmsg();
 use Apache::Constants qw(:common);
 use Apache::lonlocal;
+use Apache::lonenc;
 use String::Similarity;
+use LONCAPA;
+
+use POSIX qw(floor);
+
 
-my %oldessays=();
 my %perm=();
+my %bubble_lines_per_response = ();     # no. bubble lines for each response.
+                                   # index is "symb.part_id"
+
+my %first_bubble_line = ();	# First bubble line no. for each bubble.
+
+# Save and restore the bubble lines array to the form env.
+
+
+sub save_bubble_lines {
+    &Apache::lonnet::logthis("Saving bubble_lines...");
+    foreach my $line (keys(%bubble_lines_per_response)) {
+	&Apache::lonnet::logthis("Saving form.scantron.bubblelines.$line value: $bubble_lines_per_response{$line}");
+	$env{"form.scantron.bubblelines.$line"}  = $bubble_lines_per_response{$line};
+	$env{"form.scantron.first_bubble_line.$line"} =
+	    $first_bubble_line{$line};
+    }
+}
+
+
+sub restore_bubble_lines {
+    my $line = 0;
+    %bubble_lines_per_response = ();
+    while ($env{"form.scantron.bubblelines.$line"}) {
+	my $value = $env{"form.scantron.bubblelines.$line"};
+	&Apache::lonnet::logthis("Restoring form.scantron.bubblelines.$line value: $value");
+	$bubble_lines_per_response{$line} = $value;
+	$first_bubble_line{$line}  =
+	    $env{"form.scantron.first_bubble_line.$line"};
+	$line++;
+    }
+
+}
+
+#  Given the parsed scanline, get the response for 
+#  'answer' number n:
+
+sub get_response_bubbles {
+    my ($parsed_line, $response)  = @_;
+
+    my $bubble_line = $first_bubble_line{$response};
+    my $bubble_lines= $bubble_lines_per_response{$response};
+    my $selected = "";
+
+    for (my $bline = 0; $bline < $bubble_lines; $bline++) {
+	$selected .= $$parsed_line{"scantron.$bubble_line.answer"};
+	$bubble_line++;
+    }
+    return $selected;
+}
+
 
 # ----- These first few routines are general use routines.----
+
+# Return the number of occurences of a pattern in a string.
+
+sub occurence_count {
+    my ($string, $pattern) = @_;
+
+    my @matches = ($string =~ /$pattern/g);
+
+    return scalar(@matches);
+}
+
+
+# Take a string known to have digits and convert all the
+# digits into letters in the range J,A..I.
+
+sub digits_to_letters {
+    my ($input) = @_;
+
+    my @alphabet = ('J', 'A'..'I');
+
+    my @input    = split(//, $input);
+    my $output ='';
+    for (my $i = 0; $i < scalar(@input); $i++) {
+	if ($input[$i] =~ /\d/) {
+	    $output .= $alphabet[$input[$i]];
+	} else {
+	    $output .= $input[$i];
+	}
+    }
+    return $output;
+}
+
 #
 # --- Retrieve the parts from the metadata file.---
 sub getpartlist {
-    my ($url,$symb) = @_;
-    my $partorder = &Apache::lonnet::metadata($url, 'partorder');
-    my @parts;
-    if ($partorder) {
-	for my $part (split (/,/,$partorder)) {
-	    if (!&Apache::loncommon::check_if_partid_hidden($part,$symb)) {
-		push(@parts, $part);
-	    }
-	}	    
-    } else {
-	my $metadata = &Apache::lonnet::metadata($url, 'packages');
-	foreach (split(/\,/,$metadata)) {
-	    if ($_ =~ /^part_(.*)$/) {
-		if (!&Apache::loncommon::check_if_partid_hidden($1,$symb)) {
-		    push(@parts, $1);
-		}
-	    }
-	}
-    }
+    my ($symb) = @_;
+
+    my $navmap   = Apache::lonnavmaps::navmap->new();
+    my $res      = $navmap->getBySymb($symb);
+    my $partlist = $res->parts();
+    my $url      = $res->src();
+    my @metakeys = split(/,/,&Apache::lonnet::metadata($url,'keys'));
+
     my @stores;
-    foreach my $part (@parts) {
-	my (@metakeys) = split(/,/,&Apache::lonnet::metadata($url,'keys'));
+    foreach my $part (@{ $partlist }) {
 	foreach my $key (@metakeys) {
 	    if ($key =~ m/^stores_\Q$part\E_/) { push(@stores,$key); }
 	}
@@ -78,7 +152,7 @@ sub getpartlist {
 }
 
 # --- Get the symbolic name of a problem and the url
-sub get_symb_and_url {
+sub get_symb {
     my ($request,$silent) = @_;
     (my $url=$env{'form.url'}) =~ s-^http://($ENV{'SERVER_NAME'}|$ENV{'HTTP_HOST'})--;
     my $symb=($env{'form.symb'} ne '' ? $env{'form.symb'} : (&Apache::lonnet::symbread($url)));
@@ -88,7 +162,8 @@ sub get_symb_and_url {
 	    return ();
 	}
     }
-    return ($symb,$url);
+    &Apache::lonenc::check_decrypt(\$symb);
+    return ($symb);
 }
 
 #--- Format fullname, username:domain if different for display
@@ -96,57 +171,56 @@ sub get_symb_and_url {
 sub nameUserString {
     my ($type,$fullname,$uname,$udom) = @_;
     if ($type eq 'header') {
-	return '<b>&nbsp;Fullname&nbsp;</b><font color="#999999">(Username)</font>';
+	return '<b>&nbsp;Fullname&nbsp;</b><span class="LC_internal_info">(Username)</span>';
     } else {
-	return '&nbsp;'.$fullname.'<font color="#999999">&nbsp;('.$uname.
-	    ($env{'user.domain'} eq $udom ? '' : ' ('.$udom.')').')</font>';
+	return '&nbsp;'.$fullname.'<span class="LC_internal_info">&nbsp;('.$uname.
+	    ($env{'user.domain'} eq $udom ? '' : ' ('.$udom.')').')</span>';
     }
 }
 
 #--- Get the partlist and the response type for a given problem. ---
 #--- Indicate if a response type is coded handgraded or not. ---
 sub response_type {
-    my ($url,$symb) = shift;
-    $symb=($env{'form.symb'} ne '' ? $env{'form.symb'} : (&Apache::lonnet::symbread($url))) if ($symb eq '');
-    my $allkeys = &Apache::lonnet::metadata($url,'keys');
-    my %vPart;
-    foreach my $partid (&Apache::loncommon::get_env_multiple('form.vPart')) {
-	$vPart{$partid}=1;
-    }
-    my %seen = ();
-    my (@partlist,%handgrade,%responseType);
-    foreach (split(/,/,&Apache::lonnet::metadata($url,'packages'))) {
-	if (/^\w+response_.*/) {
-	    my ($responsetype,$part) = split(/_/,$_,2);
-	    my ($partid,$respid) = split(/_/,$part);
-	    if (&Apache::loncommon::check_if_partid_hidden($partid,$symb)) {
-		next;
-	    }
-	    if (%vPart && !exists($vPart{$partid})) {
-		next;
-	    }
-	    $responsetype =~ s/response$//; # make it compatible w/ navmaps - should move to that!!
-	    my ($value) = &Apache::lonnet::EXT('resource.'.$part.'.handgrade',$symb);
-	    $handgrade{$part} = ($value eq 'yes' ? 'yes' : 'no'); 
-	    if (!exists($responseType{$partid})) { $responseType{$partid}={}; }
-	    $responseType{$partid}->{$respid}=$responsetype;
-	    next if ($seen{$partid} > 0);
-	    $seen{$partid}++;
-	    push @partlist,$partid;
-	}
-    }
-    return \@partlist,\%handgrade,\%responseType;
+    my ($symb) = shift;
+
+    my $navmap = Apache::lonnavmaps::navmap->new();
+    my $res = $navmap->getBySymb($symb);
+    my $partlist = $res->parts();
+    my %vPart = 
+	map { $_ => 1 } (&Apache::loncommon::get_env_multiple('form.vPart'));
+    my (%response_types,%handgrade);
+    foreach my $part (@{ $partlist }) {
+	next if (%vPart && !exists($vPart{$part}));
+
+	my @types = $res->responseType($part);
+	my @ids = $res->responseIds($part);
+	for (my $i=0; $i < scalar(@ids); $i++) {
+	    $response_types{$part}{$ids[$i]} = $types[$i];
+	    $handgrade{$part.'_'.$ids[$i]} = 
+		&Apache::lonnet::EXT('resource.'.$part.'_'.$ids[$i].
+				     '.handgrade',$symb);
+	}
+    }
+    return ($partlist,\%handgrade,\%response_types);
+}
+
+sub flatten_responseType {
+    my ($responseType) = @_;
+    my @part_response_id =
+	map { 
+	    my $part = $_;
+	    map {
+		[$part,$_]
+		} sort(keys(%{ $responseType->{$part} }));
+	} sort(keys(%$responseType));
+    return @part_response_id;
 }
 
 sub get_display_part {
-    my ($partID,$url,$symb)=@_;
-    if (!defined($symb) || $symb eq '') {
-	$symb=$env{'form.symb'};
-	if ($symb eq '') { $symb=&Apache::lonnet::symbread($url) }
-    }
+    my ($partID,$symb)=@_;
     my $display=&Apache::lonnet::EXT('resource.'.$partID.'.display',$symb);
     if (defined($display) and $display ne '') {
-	$display.= " (<font color=\"#999900\">id $partID</font>)";
+	$display.= " (<span class=\"LC_internal_info\">id $partID</span>)";
     } else {
 	$display=$partID;
     }
@@ -156,61 +230,95 @@ sub get_display_part {
 #--- Show resource title
 #--- and parts and response type
 sub showResourceInfo {
-    my ($url,$probTitle,$checkboxes) = @_;
+    my ($symb,$probTitle,$checkboxes) = @_;
     my $col=3;
     if ($checkboxes) { $col=4; }
-    my $result ='<table border="0">'.
-	'<tr><td colspan="'.$col.'"><font size="+1"><b>'.&mt('Current Resource').': </b>'.
-	$probTitle.'</font></td></tr>'."\n";
-    my ($partlist,$handgrade,$responseType) = &response_type($url);
+    my $result = '<h3>'.&mt('Current Resource').': '.$probTitle.'</h3>'."\n";
+    $result .='<table border="0">';
+    my ($partlist,$handgrade,$responseType) = &response_type($symb);
     my %resptype = ();
     my $hdgrade='no';
     my %partsseen;
-    for my $part_resID (sort keys(%$handgrade)) {
-	my $handgrade=$$handgrade{$part_resID};
-	my ($partID,$resID) = split(/_/,$part_resID);
-	my $responsetype = $responseType->{$partID}->{$resID};
-	$hdgrade = $handgrade if ($handgrade eq 'yes');
-	$result.='<tr>';
-	if ($checkboxes) {
-	    if (exists($partsseen{$partID})) {
-		$result.="<td>&nbsp;</td>";
-	    } else {
-		$result.="<td><input type='checkbox' name='vPart' value='$partID' checked='on' /></td>";
+    foreach my $partID (sort keys(%$responseType)) {
+	foreach my $resID (sort keys(%{ $responseType->{$partID} })) {
+	    my $handgrade=$$handgrade{$partID.'_'.$resID};
+	    my $responsetype = $responseType->{$partID}->{$resID};
+	    $hdgrade = $handgrade if ($handgrade eq 'yes');
+	    $result.='<tr>';
+	    if ($checkboxes) {
+		if (exists($partsseen{$partID})) {
+		    $result.="<td>&nbsp;</td>";
+		} else {
+		    $result.="<td><input type='checkbox' name='vPart' value='$partID' checked='checked' /></td>";
+		}
+		$partsseen{$partID}=1;
 	    }
-	    $partsseen{$partID}=1;
-	}
-	my $display_part=&get_display_part($partID,$url);
-	$result.='<td><b>Part: </b>'.$display_part.' <font color="#999999">'.
-	    $resID.'</font></td>'.
-	    '<td><b>Type: </b>'.$responsetype.'</td></tr>';
+	    my $display_part=&get_display_part($partID,$symb);
+	    $result.='<td><b>Part: </b>'.$display_part.' <span class="LC_internal_info">'.
+		$resID.'</span></td>'.
+		'<td><b>Type: </b>'.$responsetype.'</td></tr>';
 #	    '<td><b>Handgrade: </b>'.$handgrade.'</td></tr>';
+	}
     }
     $result.='</table>'."\n";
     return $result,$responseType,$hdgrade,$partlist,$handgrade;
 }
 
-
-sub get_order {
-    my ($partid,$respid,$symb,$uname,$udom)=@_;
-    my (undef,undef,$url)=&Apache::lonnet::decode_symb($symb);
-    $url=&Apache::lonnet::clutter($url);
-    my $subresult=&Apache::lonnet::ssi($url,
-				       ('grade_target' => 'analyze'),
-				       ('grade_domain' => $udom),
-				       ('grade_symb' => $symb),
-				       ('grade_courseid' => 
-					        $env{'request.course.id'}),
-				       ('grade_username' => $uname));
-    (undef,$subresult)=split(/_HASH_REF__/,$subresult,2);
-    my %analyze=&Apache::lonnet::str2hash($subresult);
-    return ($analyze{"$partid.$respid.shown"});
+sub reset_caches {
+    &reset_analyze_cache();
+    &reset_perm();
+}
+
+{
+    my %analyze_cache;
+
+    sub reset_analyze_cache {
+	undef(%analyze_cache);
+    }
+
+    sub get_analyze {
+	my ($symb,$uname,$udom)=@_;
+	my $key = "$symb\0$uname\0$udom";
+	return $analyze_cache{$key} if (exists($analyze_cache{$key}));
+
+	my (undef,undef,$url)=&Apache::lonnet::decode_symb($symb);
+	$url=&Apache::lonnet::clutter($url);
+	my $subresult=&Apache::lonnet::ssi($url,
+					   ('grade_target' => 'analyze'),
+					   ('grade_domain' => $udom),
+					   ('grade_symb' => $symb),
+					   ('grade_courseid' => 
+					    $env{'request.course.id'}),
+					   ('grade_username' => $uname));
+	(undef,$subresult)=split(/_HASH_REF__/,$subresult,2);
+	my %analyze=&Apache::lonnet::str2hash($subresult);
+	return $analyze_cache{$key} = \%analyze;
+    }
+
+    sub get_order {
+	my ($partid,$respid,$symb,$uname,$udom)=@_;
+	my $analyze = &get_analyze($symb,$uname,$udom);
+	return $analyze->{"$partid.$respid.shown"};
+    }
+
+    sub get_radiobutton_correct_foil {
+	my ($partid,$respid,$symb,$uname,$udom)=@_;
+	my $analyze = &get_analyze($symb,$uname,$udom);
+	foreach my $foil (@{&get_order($partid,$respid,$symb,$uname,$udom)}) {
+	    if ($analyze->{"$partid.$respid.foil.value.$foil"} eq 'true') {
+		return $foil;
+	    }
+	}
+    }
 }
+
 #--- Clean response type for display
-#--- Currently filters option/rank/radiobutton/match/essay response types only.
+#--- Currently filters option/rank/radiobutton/match/essay/Task
+#        response types only.
 sub cleanRecord {
-    my ($answer,$response,$symb,$partid,$respid,$record,$order,$version) = @_;
-    my $grayFont = '<font color="#999999">';
+    my ($answer,$response,$symb,$partid,$respid,$record,$order,$version,
+	$uname,$udom) = @_;
+    my $grayFont = '<span class="LC_internal_info">';
     if ($response =~ /^(option|rank)$/) {
 	my %answer=&Apache::lonnet::str2hash($answer);
 	my %grading=&Apache::lonnet::str2hash($record->{$version."resource.$partid.$respid.submissiongrading"});
@@ -221,11 +329,11 @@ sub cleanRecord {
 	    } else {
 		$toprow.='<td><i>'.$answer{$foil}.'&nbsp;</i></td>';
 	    }
-	    $bottomrow.='<td>'.$grayFont.$foil.'</font>&nbsp;</td>';
+	    $bottomrow.='<td>'.$grayFont.$foil.'</span>&nbsp;</td>';
 	}
 	return '<blockquote><table border="1">'.
 	    '<tr valign="top"><td>Answer</td>'.$toprow.'</tr>'.
-	    '<tr valign="top"><td>'.$grayFont.'Option ID</font></td>'.
+	    '<tr valign="top"><td>'.$grayFont.'Option ID</span></td>'.
 	    $grayFont.$bottomrow.'</tr>'.'</table></blockquote>';
     } elsif ($response eq 'match') {
 	my %answer=&Apache::lonnet::str2hash($answer);
@@ -236,27 +344,27 @@ sub cleanRecord {
 	    my $item=shift(@items);
 	    if ($grading{$foil} == 1) {
 		$toprow.='<td><b>'.$item.'&nbsp;</b></td>';
-		$middlerow.='<td><b>'.$grayFont.$answer{$foil}.'&nbsp;</font></b></td>';
+		$middlerow.='<td><b>'.$grayFont.$answer{$foil}.'&nbsp;</span></b></td>';
 	    } else {
 		$toprow.='<td><i>'.$item.'&nbsp;</i></td>';
-		$middlerow.='<td><i>'.$grayFont.$answer{$foil}.'&nbsp;</font></i></td>';
+		$middlerow.='<td><i>'.$grayFont.$answer{$foil}.'&nbsp;</span></i></td>';
 	    }
-	    $bottomrow.='<td>'.$grayFont.$foil.'</font>&nbsp;</td>';
+	    $bottomrow.='<td>'.$grayFont.$foil.'</span>&nbsp;</td>';
 	}
 	return '<blockquote><table border="1">'.
 	    '<tr valign="top"><td>Answer</td>'.$toprow.'</tr>'.
-	    '<tr valign="top"><td>'.$grayFont.'Item ID</font></td>'.
+	    '<tr valign="top"><td>'.$grayFont.'Item ID</span></td>'.
 	    $middlerow.'</tr>'.
-	    '<tr valign="top"><td>'.$grayFont.'Option ID</font></td>'.
+	    '<tr valign="top"><td>'.$grayFont.'Option ID</span></td>'.
 	    $bottomrow.'</tr>'.'</table></blockquote>';
     } elsif ($response eq 'radiobutton') {
 	my %answer=&Apache::lonnet::str2hash($answer);
 	my ($toprow,$bottomrow);
-	my $correct=($order->[0])+1;
-	for (my $i=1;$i<=$#$order;$i++) {
-	    my $foil=$order->[$i];
+	my $correct = 
+	    &get_radiobutton_correct_foil($partid,$respid,$symb,$uname,$udom);
+	foreach my $foil (@$order) {
 	    if (exists($answer{$foil})) {
-		if ($i == $correct) {
+		if ($foil eq $correct) {
 		    $toprow.='<td><b>true</b></td>';
 		} else {
 		    $toprow.='<td><i>true</i></td>';
@@ -264,11 +372,11 @@ sub cleanRecord {
 	    } else {
 		$toprow.='<td>false</td>';
 	    }
-	    $bottomrow.='<td>'.$grayFont.$foil.'</font>&nbsp;</td>';
+	    $bottomrow.='<td>'.$grayFont.$foil.'</span>&nbsp;</td>';
 	}
 	return '<blockquote><table border="1">'.
 	    '<tr valign="top"><td>Answer</td>'.$toprow.'</tr>'.
-	    '<tr valign="top"><td>'.$grayFont.'Option ID</font></td>'.
+	    '<tr valign="top"><td>'.$grayFont.'Option ID</span></td>'.
 	    $grayFont.$bottomrow.'</tr>'.'</table></blockquote>';
     } elsif ($response eq 'essay') {
 	if (! exists ($env{'form.'.$symb})) {
@@ -290,6 +398,40 @@ sub cleanRecord {
 	my $jme=$record->{$version."resource.$partid.$respid.molecule"};
 	$result.=&Apache::chemresponse::jme_img($jme,$answer,400);
 	return $result;
+    } elsif ( $response eq 'Task') {
+	if ( $answer eq 'SUBMITTED') {
+	    my $files = $record->{$version."resource.$respid.$partid.bridgetask.portfiles"};
+	    my $result = &Apache::bridgetask::file_list($files,$uname,$udom);
+	    return $result;
+	} elsif ( grep(/^\Q$version\E.*?\.instance$/, keys(%{$record})) ) {
+	    my @matches = grep(/^\Q$version\E.*?\.instance$/,
+			       keys(%{$record}));
+	    return join('<br />',($version,@matches));
+			       
+			       
+	} else {
+	    my $result =
+		'<p>'
+		.&mt('Overall result: [_1]',
+		     $record->{$version."resource.$respid.$partid.status"})
+		.'</p>';
+	    
+	    $result .= '<ul>';
+	    my @grade = grep(/^\Q${version}resource.$respid.$partid.\E[^.]*[.]status$/,
+			     keys(%{$record}));
+	    foreach my $grade (sort(@grade)) {
+		my ($dim) = ($grade =~/[.]([^.]+)[.]status$/);
+		$result.= '<li>'.&mt("Dimension: [_1], status [_2] ",
+				     $dim, $record->{$grade}).
+			  '</li>';
+	    }
+	    $result.='</ul>';
+	    return $result;
+	}
+    } elsif ( $response =~ m/(?:numerical|formula)/) {
+	$answer = 
+	    &Apache::loncommon::format_previous_attempt_value('submission',
+							      $answer);
     }
     return $answer;
 }
@@ -333,11 +475,31 @@ COMMONJSFUNCTIONS
 #--- Dumps the class list with usernames,list of sections,
 #--- section, ids and fullnames for each user.
 sub getclasslist {
-    my ($getsec,$filterlist) = @_;
-    $getsec = $getsec eq '' ? 'all' : $getsec;
-    my $classlist=&Apache::loncoursedata::get_classlist();
+    my ($getsec,$filterlist,$getgroup) = @_;
+    my @getsec;
+    my @getgroup;
+    my $stu_status = join(':',&Apache::loncommon::get_env_multiple('form.Status'));
+    if (!ref($getsec)) {
+	if ($getsec ne '' && $getsec ne 'all') {
+	    @getsec=($getsec);
+	}
+    } else {
+	@getsec=@{$getsec};
+    }
+    if (grep(/^all$/,@getsec)) { undef(@getsec); }
+    if (!ref($getgroup)) {
+	if ($getgroup ne '' && $getgroup ne 'all') {
+	    @getgroup=($getgroup);
+	}
+    } else {
+	@getgroup=@{$getgroup};
+    }
+    if (grep(/^all$/,@getgroup)) { undef(@getgroup); }
+
+    my ($classlist,$keylist)=&Apache::loncoursedata::get_classlist();
     # Bail out if we were unable to get the classlist
     return if (! defined($classlist));
+    &Apache::loncoursedata::get_group_memberships($classlist,$keylist);
     #
     my %sections;
     my %fullnames;
@@ -354,18 +516,40 @@ sub getclasslist {
             $classlist->{$student}->[&Apache::loncoursedata::CL_FULLNAME()];
         my $status   = 
             $classlist->{$student}->[&Apache::loncoursedata::CL_STATUS()];
+        my $group   = 
+            $classlist->{$student}->[&Apache::loncoursedata::CL_GROUP()];
 	# filter students according to status selected
-	if ($filterlist && $env{'form.Status'} ne 'Any') {
-	    if ($env{'form.Status'} ne $status) {
-		delete ($classlist->{$student});
+	if ($filterlist && (!($stu_status =~ /Any/))) {
+	    if (!($stu_status =~ $status)) {
+		delete($classlist->{$student});
 		next;
 	    }
 	}
+	# filter students according to groups selected
+	my @stu_groups = split(/,/,$group);
+	if (@getgroup) {
+	    my $exclude = 1;
+	    foreach my $grp(@getgroup) {
+	        foreach my $stu_group(@stu_groups) {
+	            if ($stu_group eq $grp) {
+	                $exclude = 0;
+    	            } 
+	        }
+    	        if (($grp eq 'none') && !$group) {
+        	        $exclude = 0;
+        	}
+	    }
+	    if ($exclude) {
+	        delete($classlist->{$student});
+	    }
+	}
 	$section = ($section ne '' ? $section : 'none');
 	if (&canview($section)) {
-	    if ($getsec eq 'all' || $getsec eq $section) {
+	    if (!@getsec || grep(/^\Q$section\E$/,@getsec)) {
 		$sections{$section}++;
-		$fullnames{$student}=$fullname;
+		if ($classlist->{$student}) {
+		    $fullnames{$student}=$fullname;
+		}
 	    } else {
 		delete($classlist->{$student});
 	    }
@@ -420,7 +604,7 @@ sub canview {
 
 #--- Retrieve the grade status of a student for all the parts
 sub student_gradeStatus {
-    my ($url,$symb,$udom,$uname,$partlist) = @_;
+    my ($symb,$udom,$uname,$partlist) = @_;
     my %record     = &Apache::lonnet::restore($symb,$env{'request.course.id'},$udom,$uname);
     my %partstatus = ();
     foreach (@$partlist) {
@@ -437,7 +621,8 @@ sub student_gradeStatus {
 # Use by verifyscript and viewgrades
 # Shows a student's view of problem and submission
 sub jscriptNform {
-    my ($url,$symb) = @_;
+    my ($symb) = @_;
+    my $stu_status = join(':',&Apache::loncommon::get_env_multiple('form.Status'));
     my $jscript='<script type="text/javascript" language="javascript">'."\n".
 	'    function viewOneStudent(user,domain) {'."\n".
 	'	document.onestudent.student.value = user;'."\n".
@@ -446,11 +631,10 @@ sub jscriptNform {
 	'    }'."\n".
 	'</script>'."\n";
     $jscript.= '<form action="/adm/grades" method="post" name="onestudent">'."\n".
-	'<input type="hidden" name="symb"    value="'.$symb.'" />'."\n".
-	'<input type="hidden" name="url"     value="'.$url.'" />'."\n".
+	'<input type="hidden" name="symb"    value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n".
 	'<input type="hidden" name="saveState" value="'.$env{'form.saveState'}.'" />'."\n".
 	'<input type="hidden" name="probTitle" value="'.$env{'form.probTitle'}.'" />'."\n".
-	'<input type="hidden" name="Status"  value="'.$env{'form.Status'}.'" />'."\n".
+	'<input type="hidden" name="Status"  value="'.$stu_status.'" />'."\n".
 	'<input type="hidden" name="command" value="submission" />'."\n".
 	'<input type="hidden" name="student" value="" />'."\n".
 	'<input type="hidden" name="userdom" value="" />'."\n".
@@ -458,6 +642,35 @@ sub jscriptNform {
     return $jscript;
 }
 
+
+
+# Given the score (as a number [0-1] and the weight) what is the final
+# point value? This function will round to the nearest tenth, third,
+# or quarter if one of those is within the tolerance of .00001.
+sub compute_points {
+    my ($score, $weight) = @_;
+    
+    my $tolerance = .00001;
+    my $points = $score * $weight;
+
+    # Check for nearness to 1/x.
+    my $check_for_nearness = sub {
+        my ($factor) = @_;
+        my $num = ($points * $factor) + $tolerance;
+        my $floored_num = floor($num);
+        if ($num - $floored_num < 2 * $tolerance * $factor) {
+            return $floored_num / $factor;
+        }
+        return $points;
+    };
+
+    $points = $check_for_nearness->(10);
+    $points = $check_for_nearness->(3);
+    $points = $check_for_nearness->(4);
+    
+    return $points;
+}
+
 #------------------ End of general use routines --------------------
 
 #
@@ -465,12 +678,16 @@ sub jscriptNform {
 #
 
 sub most_similar {
-    my ($uname,$udom,$uessay)=@_;
+    my ($uname,$udom,$uessay,$old_essays)=@_;
 
 # ignore spaces and punctuation
 
     $uessay=~s/\W+/ /gs;
 
+# ignore empty submissions (occuring when only files are sent)
+
+    unless ($uessay=~/\w+/) { return ''; }
+
 # these will be returned. Do not care if not at least 50 percent similar
     my $limit=0.6;
     my $sname='';
@@ -478,23 +695,22 @@ sub most_similar {
     my $scrsid='';
     my $sessay='';
 # go through all essays ...
-    foreach my $tkey (keys %oldessays) {
-	my ($tname,$tdom,$tcrsid)=split(/\./,$tkey);
+    foreach my $tkey (keys(%$old_essays)) {
+	my ($tname,$tdom,$tcrsid)=map {&unescape($_)} (split(/\./,$tkey));
 # ... except the same student
-        if (($tname ne $uname) || ($tdom ne $udom)) {
-	    my $tessay=$oldessays{$tkey};
-            $tessay=~s/\W+/ /gs;
+        next if (($tname eq $uname) && ($tdom eq $udom));
+	my $tessay=$old_essays->{$tkey};
+	$tessay=~s/\W+/ /gs;
 # String similarity gives up if not even limit
-            my $tsimilar=&String::Similarity::similarity($uessay,$tessay,$limit);
+	my $tsimilar=&String::Similarity::similarity($uessay,$tessay,$limit);
 # Found one
-            if ($tsimilar>$limit) {
-		$limit=$tsimilar;
-                $sname=$tname;
-                $sdom=$tdom;
-                $scrsid=$tcrsid;
-                $sessay=$oldessays{$tkey};
-            }
-        } 
+	if ($tsimilar>$limit) {
+	    $limit=$tsimilar;
+	    $sname=$tname;
+	    $sdom=$tdom;
+	    $scrsid=$tcrsid;
+	    $sessay=$old_essays->{$tkey};
+	}
     }
     if ($limit>0.6) {
        return ($sname,$sdom,$scrsid,$sessay,$limit);
@@ -515,30 +731,33 @@ sub verifyreceipt {
     my $receipt  = &Apache::lonnet::recprefix($courseid).'-'.
 	$env{'form.receipt'};
     $receipt     =~ s/[^\-\d]//g;
-    my $url      = $env{'form.url'};
-    my $symb     = $env{'form.symb'};
-    unless ($symb) {
-	$symb    = &Apache::lonnet::symbread($url);
-    }
+    my ($symb)   = &get_symb($request);
 
-    my $title.='<h3><font color="#339933">Verifying Submission Receipt '.
-	$receipt.'</h3></font>'."\n".
-	'<font size=+1><b>Resource: </b>'.$env{'form.probTitle'}.'</font><br><br>'."\n";
+    my $title.='<h3><span class="LC_info">Verifying Submission Receipt '.
+	$receipt.'</h3></span>'."\n".
+	'<h4><b>Resource: </b>'.$env{'form.probTitle'}.'</h4><br /><br />'."\n";
 
     my ($string,$contents,$matches) = ('','',0);
     my (undef,undef,$fullname) = &getclasslist('all','0');
     
     my $receiptparts=0;
-    if ($env{"course.$courseid.receiptalg"} eq 'receipt2') { $receiptparts=1; }
+    if ($env{"course.$courseid.receiptalg"} eq 'receipt2' ||
+	$env{"course.$courseid.receiptalg"} eq 'receipt3') { $receiptparts=1; }
     my $parts=['0'];
-    if ($receiptparts) { ($parts)=&response_type($url,$symb); }
-    foreach (sort {lc($$fullname{$a}) cmp lc($$fullname{$b}) } keys %$fullname) {
+    if ($receiptparts) { ($parts)=&response_type($symb); }
+    foreach (sort 
+	     {
+		 if (lc($$fullname{$a}) ne lc($$fullname{$b})) {
+		     return (lc($$fullname{$a}) cmp lc($$fullname{$b}));
+		 }
+		 return $a cmp $b;
+	     } (keys(%$fullname))) {
 	my ($uname,$udom)=split(/\:/);
 	foreach my $part (@$parts) {
 	    if ($receipt eq &Apache::lonnet::ireceipt($uname,$udom,$courseid,$symb,$part)) {
 		$contents.='<tr bgcolor="#ffffe6"><td>&nbsp;'."\n".
 		    '<a href="javascript:viewOneStudent(\''.$uname.'\',\''.$udom.
-		    '\')"; TARGET=_self>'.$$fullname{$_}.'</a>&nbsp;</td>'."\n".
+		    '\');" target="_self">'.$$fullname{$_}.'</a>&nbsp;</td>'."\n".
 		    '<td>&nbsp;'.$uname.'&nbsp;</td>'.
 		    '<td>&nbsp;'.$udom.'&nbsp;</td>';
 		if ($receiptparts) {
@@ -553,7 +772,7 @@ sub verifyreceipt {
     if ($matches == 0) {
 	$string = $title.'No match found for the above receipt.';
     } else {
-	$string = &jscriptNform($url,$symb).$title.
+	$string = &jscriptNform($symb).$title.
 	    'The above receipt matches the following student'.
 	    ($matches <= 1 ? '.' : 's.')."\n".
 	    '<table border="0"><tr><td bgcolor="#777777">'."\n".
@@ -567,7 +786,7 @@ sub verifyreceipt {
 	$string.='</tr>'."\n".$contents.
 	    '</table></td></tr></table>'."\n";
     }
-    return $string.&show_grading_menu_form($symb,$url);
+    return $string.&show_grading_menu_form($symb);
 }
 
 #--- This is called by a number of programs.
@@ -577,20 +796,20 @@ sub verifyreceipt {
 sub listStudents {
     my ($request) = shift;
 
-    my ($symb,$url) = &get_symb_and_url($request);
+    my ($symb) = &get_symb($request);
     my $cdom      = $env{"course.$env{'request.course.id'}.domain"};
     my $cnum      = $env{"course.$env{'request.course.id'}.num"};
     my $getsec    = $env{'form.section'} eq '' ? 'all' : $env{'form.section'};
+    my $getgroup  = $env{'form.group'} eq '' ? 'all' : $env{'form.group'};
     my $submitonly= $env{'form.submitonly'} eq '' ? 'all' : $env{'form.submitonly'};
-
     my $viewgrade = $env{'form.showgrading'} eq 'yes' ? 'View/Grade/Regrade' : 'View';
     $env{'form.probTitle'} = $env{'form.probTitle'} eq '' ? 
 	&Apache::lonnet::gettitle($symb) : $env{'form.probTitle'};
 
-    my $result='<h3><font color="#339933">&nbsp;'.$viewgrade.
-	' Submissions for a Student or a Group of Students</font></h3>';
+    my $result='<h3><span class="LC_info">&nbsp;'.$viewgrade.
+	' Submissions for a Student or a Group of Students</span></h3>';
 
-    my ($table,undef,$hdgrade,$partlist,$handgrade) = &showResourceInfo($url,$env{'form.probTitle'},($env{'form.showgrading'} eq 'yes'));
+    my ($table,undef,$hdgrade,$partlist,$handgrade) = &showResourceInfo($symb,$env{'form.probTitle'},($env{'form.showgrading'} eq 'yes'));
 
     $request->print(<<LISTJAVASCRIPT);
 <script type="text/javascript" language="javascript">
@@ -628,40 +847,44 @@ LISTJAVASCRIPT
     &commonJSfunctions($request);
     $request->print($result);
 
-    my $checkhdgrade = ($env{'form.handgrade'} eq 'yes' && scalar(@$partlist) > 1 ) ? 'checked' : '';
-    my $checklastsub = $checkhdgrade eq '' ? 'checked' : '';
+    my $checkhdgrade = ($env{'form.handgrade'} eq 'yes' && scalar(@$partlist) > 1 ) ? 'checked="checked"' : '';
+    my $checklastsub = $checkhdgrade eq '' ? 'checked="checked"' : '';
     my $gradeTable='<form action="/adm/grades" method="post" name="gradesub">'.
 	"\n".$table.
-	'&nbsp;<b>View Problem Text: </b><label><input type="radio" name="vProb" value="no" checked="on" /> no </label>'."\n".
+	'&nbsp;<b>View Problem Text: </b><label><input type="radio" name="vProb" value="no" checked="checked" /> no </label>'."\n".
 	'<label><input type="radio" name="vProb" value="yes" /> one student </label>'."\n".
 	'<label><input type="radio" name="vProb" value="all" /> all students </label><br />'."\n".
 	'&nbsp;<b>View Answer: </b><label><input type="radio" name="vAns" value="no"  /> no </label>'."\n".
 	'<label><input type="radio" name="vAns" value="yes" /> one student </label>'."\n".
-	'<label><input type="radio" name="vAns" value="all" checked="on" /> all students </label><br />'."\n".
+	'<label><input type="radio" name="vAns" value="all" checked="checked" /> all students </label><br />'."\n".
 	'&nbsp;<b>Submissions: </b>'."\n";
     if ($env{'form.handgrade'} eq 'yes' && scalar(@$partlist) > 1) {
 	$gradeTable.='<label><input type="radio" name="lastSub" value="hdgrade" '.$checkhdgrade.' /> essay part only </label>'."\n";
     }
-
-    my $saveStatus = $env{'form.Status'} eq '' ? 'Active' : $env{'form.Status'};
+    my $stu_status = join(':',&Apache::loncommon::get_env_multiple('form.Status'));
+    my $saveStatus = $stu_status eq '' ? 'Active' : $stu_status;
     $env{'form.Status'} = $saveStatus;
-
     $gradeTable.='<label><input type="radio" name="lastSub" value="lastonly" '.$checklastsub.' /> last submission only </label>'."\n".
 	'<label><input type="radio" name="lastSub" value="last" /> last submission & parts info </label>'."\n".
 	'<label><input type="radio" name="lastSub" value="datesub" /> by dates and submissions </label>'."\n".
-	'<label><input type="radio" name="lastSub" value="all" /> all details</label>'."\n".
-	'<input type="hidden" name="section"     value="'.$getsec.'" />'."\n".
+	'<label><input type="radio" name="lastSub" value="all" /> all details</label><br />'."\n".
+        '&nbsp;<b>Grading Increments:</b> <select name="increment">'.
+        '<option value="1">Whole Points</option>'.
+        '<option value=".5">Half Points</option>'.
+        '<option value=".25">Quarter Points</option>'.
+        '<option value=".1">Tenths of a Point</option>'.
+        '</select>'.
+        &build_section_inputs().
 	'<input type="hidden" name="submitonly"  value="'.$submitonly.'" />'."\n".
 	'<input type="hidden" name="handgrade"   value="'.$env{'form.handgrade'}.'" /><br />'."\n".
 	'<input type="hidden" name="showgrading" value="'.$env{'form.showgrading'}.'" /><br />'."\n".
 	'<input type="hidden" name="saveState"   value="'.$env{'form.saveState'}.'" />'."\n".
 	'<input type="hidden" name="probTitle"   value="'.$env{'form.probTitle'}.'" />'."\n".
-	'<input type="hidden" name="url"  value="'.$url.'" />'."\n".
-	'<input type="hidden" name="symb" value="'.$symb.'" />'."\n".
+	'<input type="hidden" name="symb" value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n".
 	'<input type="hidden" name="saveStatusOld" value="'.$saveStatus.'" />'."\n";
 
     if (exists($env{'form.gradingMenu'}) && exists($env{'form.Status'})) {
-	$gradeTable.='<input type="hidden" name="Status"   value="'.$env{'form.Status'}.'" />'."\n";
+	$gradeTable.='<input type="hidden" name="Status"   value="'.$stu_status.'" />'."\n";
     } else {
 	$gradeTable.='<b>Student Status:</b> '.
 	    &Apache::lonhtmlcommon::StatusOptions($saveStatus,undef,1,'javascript:reLoadList(this.form);').'<br />';
@@ -677,20 +900,24 @@ LISTJAVASCRIPT
 	'onClick="javascript:checkSelect(this.form.stuinfo);" '."\n".
 	'value="Next->" /> <br />'."\n";
     $gradeTable.=&check_buttons();
-    $gradeTable.='<label><input type="checkbox" name="checkPlag" checked="on" />Check For Plagiarism</label>';
-    my ($classlist, undef, $fullname) = &getclasslist($getsec,'1');
+    $gradeTable.='<label><input type="checkbox" name="checkPlag" checked="checked" />Check For Plagiarism</label>';
+    my ($classlist, undef, $fullname) = &getclasslist($getsec,'1',$getgroup);
     $gradeTable.='<table border="0"><tr><td bgcolor="#777777">'.
 	'<table border="0"><tr bgcolor="#e6ffff">';
     my $loop = 0;
     while ($loop < 2) {
 	$gradeTable.='<td><b>&nbsp;No.</b>&nbsp;</td><td><b>&nbsp;Select&nbsp;</b></td>'.
 	    '<td>'.&nameUserString('header').'&nbsp;Section/Group</td>';
-	if ($env{'form.showgrading'} eq 'yes' && $submitonly ne 'all') {
+	if ($env{'form.showgrading'} eq 'yes' 
+	    && $submitonly ne 'queued'
+	    && $submitonly ne 'all') {
 	    foreach (sort(@$partlist)) {
-		my $display_part=&get_display_part((split(/_/))[0],$url,$symb);
+		my $display_part=&get_display_part((split(/_/))[0],$symb);
 		$gradeTable.='<td><b>&nbsp;Part: '.$display_part.
 		    ' Status&nbsp;</b></td>';
 	    }
+	} elsif ($submitonly eq 'queued') {
+	    $gradeTable.='<td><b>&nbsp;'.&mt('Queue Status').'&nbsp;</b></td>';
 	}
 	$loop++;
 #	$gradeTable.='<td></td>' if ($loop%2 ==1);
@@ -698,11 +925,30 @@ LISTJAVASCRIPT
     $gradeTable.='</tr>'."\n";
 
     my $ctr = 0;
-    foreach my $student (sort {lc($$fullname{$a}) cmp lc($$fullname{$b}) } keys %$fullname) {
+    foreach my $student (sort 
+			 {
+			     if (lc($$fullname{$a}) ne lc($$fullname{$b})) {
+				 return (lc($$fullname{$a}) cmp lc($$fullname{$b}));
+			     }
+			     return $a cmp $b;
+			 }
+			 (keys(%$fullname))) {
 	my ($uname,$udom) = split(/:/,$student);
+
 	my %status = ();
-	if ($env{'form.showgrading'} eq 'yes' && $submitonly ne 'all') {
-	    (%status) =&student_gradeStatus($url,$symb,$udom,$uname,$partlist);
+
+	if ($submitonly eq 'queued') {
+	    my %queue_status = 
+		&Apache::bridgetask::get_student_status($symb,$cdom,$cnum,
+							$udom,$uname);
+	    next if (!defined($queue_status{'gradingqueue'}));
+	    $status{'gradingqueue'} = $queue_status{'gradingqueue'};
+	}
+
+	if ($env{'form.showgrading'} eq 'yes' 
+	    && $submitonly ne 'queued'
+	    && $submitonly ne 'all') {
+	    (%status) =&student_gradeStatus($symb,$udom,$uname,$partlist);
 	    my $submitted = 0;
 	    my $graded = 0;
 	    my $incorrect = 0;
@@ -730,7 +976,7 @@ LISTJAVASCRIPT
 
 	$ctr++;
 	my $section = $classlist->{$student}->[&Apache::loncoursedata::CL_SECTION()];
-
+        my $group = $classlist->{$student}->[&Apache::loncoursedata::CL_GROUP()];
 	if ( $perm{'vgr'} eq 'F' ) {
 	    $gradeTable.='<tr bgcolor="#ffffe6">' if ($ctr%2 ==1);
 	    $gradeTable.='<td align="right">'.$ctr.'&nbsp;</td>'.
@@ -738,7 +984,7 @@ LISTJAVASCRIPT
                $student.':'.$$fullname{$student}.':::SECTION'.$section.
 	       ')&nbsp;" />&nbsp;&nbsp;</label></td>'."\n".'<td>'.
 	       &nameUserString(undef,$$fullname{$student},$uname,$udom).
-	       '&nbsp;'.$section.'</td>'."\n";
+	       '&nbsp;'.$section.'/'.$group.'</td>'."\n";
 
 	    if ($env{'form.showgrading'} eq 'yes' && $submitonly ne 'all') {
 		foreach (sort keys(%status)) {
@@ -752,10 +998,14 @@ LISTJAVASCRIPT
     }
     if ($ctr%2 ==1) {
 	$gradeTable.='<td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td>';
-	    if ($env{'form.showgrading'} eq 'yes' && $submitonly ne 'all') {
+	    if ($env{'form.showgrading'} eq 'yes' 
+		&& $submitonly ne 'queued'
+		&& $submitonly ne 'all') {
 		foreach (@$partlist) {
 		    $gradeTable.='<td>&nbsp;</td>';
 		}
+	    } elsif ($submitonly eq 'queued') {
+		$gradeTable.='<td>&nbsp;</td>';
 	    }
 	$gradeTable.='</tr>';
     }
@@ -767,19 +1017,20 @@ LISTJAVASCRIPT
     if ($ctr == 0) {
 	my $num_students=(scalar(keys(%$fullname)));
 	if ($num_students eq 0) {
-	    $gradeTable='<br />&nbsp;<font color="red">There are no students currently enrolled.</font>';
+	    $gradeTable='<br />&nbsp;<span class="LC_warning">There are no students currently enrolled.</span>';
 	} else {
 	    my $submissions='submissions';
 	    if ($submitonly eq 'incorrect') { $submissions = 'incorrect submissions'; }
 	    if ($submitonly eq 'graded'   ) { $submissions = 'ungraded submissions'; }
-	    $gradeTable='<br />&nbsp;<font color="red">'.
+	    if ($submitonly eq 'queued'   ) { $submissions = 'queued submissions'; }
+	    $gradeTable='<br />&nbsp;<span class="LC_warning">'.
 		'No '.$submissions.' found for this resource for any students. ('.$num_students.
-		' students checked for '.$submissions.')</font><br />';
+		' students checked for '.$submissions.')</span><br />';
 	}
     } elsif ($ctr == 1) {
 	$gradeTable =~ s/type=checkbox/type=checkbox checked/;
     }
-    $gradeTable.=&show_grading_menu_form($symb,$url);
+    $gradeTable.=&show_grading_menu_form($symb);
     $request->print($gradeTable);
     return '';
 }
@@ -838,8 +1089,8 @@ sub processGroup {
     my @stuchecked = &Apache::loncommon::get_env_multiple('form.stuinfo');
     my $total      = scalar(@stuchecked)-1;
 
-    foreach (@stuchecked) {
-	my ($uname,$udom,$fullname) = split(/:/);
+    foreach my $student (@stuchecked) {
+	my ($uname,$udom,$fullname) = split(/:/,$student);
 	$env{'form.student'}        = $uname;
 	$env{'form.userdom'}        = $udom;
 	$env{'form.fullname'}       = $fullname;
@@ -1035,6 +1286,81 @@ sub sub_page_kw_js {
     my $request = shift;
     my $iconpath = $request->dir_config('lonIconsURL');
     &commonJSfunctions($request);
+
+    my $inner_js_msg_central=<<INNERJS;
+    <script text="text/javascript">
+    function checkInput() {
+      opener.document.SCORE.msgsub.value = opener.checkEntities(document.msgcenter.msgsub.value);
+      var nmsg   = opener.document.SCORE.savemsgN.value;
+      var usrctr = document.msgcenter.usrctr.value;
+      var newval = opener.document.SCORE["newmsg"+usrctr];
+      newval.value = opener.checkEntities(document.msgcenter.newmsg.value);
+
+      var msgchk = "";
+      if (document.msgcenter.subchk.checked) {
+         msgchk = "msgsub,";
+      }
+      var includemsg = 0;
+      for (var i=1; i<=nmsg; i++) {
+          var opnmsg = opener.document.SCORE["savemsg"+i];
+          var frmmsg = document.msgcenter["msg"+i];
+          opnmsg.value = opener.checkEntities(frmmsg.value);
+          var showflg = opener.document.SCORE["shownOnce"+i];
+          showflg.value = "1";
+          var chkbox = document.msgcenter["msgn"+i];
+          if (chkbox.checked) {
+             msgchk += "savemsg"+i+",";
+             includemsg = 1;
+          }
+      }
+      if (document.msgcenter.newmsgchk.checked) {
+         msgchk += "newmsg"+usrctr;
+         includemsg = 1;
+      }
+      imgformname = opener.document.SCORE["mailicon"+usrctr];
+      imgformname.src = "$iconpath/"+((includemsg) ? "mailto.gif" : "mailbkgrd.gif");
+      var includemsg = opener.document.SCORE["includemsg"+usrctr];
+      includemsg.value = msgchk;
+
+      self.close()
+
+    }
+    </script>
+INNERJS
+
+    my $inner_js_highlight_central=<<INNERJS;
+ <script type="text/javascript">
+    function updateChoice(flag) {
+      opener.document.SCORE.kwclr.value = opener.radioSelection(document.hlCenter.kwdclr);
+      opener.document.SCORE.kwsize.value = opener.radioSelection(document.hlCenter.kwdsize);
+      opener.document.SCORE.kwstyle.value = opener.radioSelection(document.hlCenter.kwdstyle);
+      opener.document.SCORE.refresh.value = "on";
+      if (opener.document.SCORE.keywords.value!=""){
+         opener.document.SCORE.submit();
+      }
+      self.close()
+    }
+</script>
+INNERJS
+
+    my $start_page_msg_central = 
+        &Apache::loncommon::start_page('Message Central',$inner_js_msg_central,
+				       {'js_ready'  => 1,
+					'only_body' => 1,
+					'bgcolor'   =>'#FFFFFF',});
+    my $end_page_msg_central = 
+	&Apache::loncommon::end_page({'js_ready' => 1});
+
+
+    my $start_page_highlight_central = 
+        &Apache::loncommon::start_page('Highlight Central',
+				       $inner_js_highlight_central,
+				       {'js_ready'  => 1,
+					'only_body' => 1,
+					'bgcolor'   =>'#FFFFFF',});
+    my $end_page_highlight_central = 
+	&Apache::loncommon::end_page({'js_ready' => 1});
+
     my $docopen=&Apache::lonhtmlcommon::javascript_docopen();
     $docopen=~s/^document\.//;
     $request->print(<<SUBJAVASCRIPT);
@@ -1150,55 +1476,11 @@ sub sub_page_kw_js {
     pWin.focus();
     pDoc = pWin.document;
     pDoc.$docopen;
-    pDoc.write("<html><head>");
-    pDoc.write("<title>Message Central</title>");
-
-    pDoc.write("<script language=javascript>");
-    pDoc.write("function checkInput() {");
-    pDoc.write("  opener.document.SCORE.msgsub.value = opener.checkEntities(document.msgcenter.msgsub.value);");
-    pDoc.write("  var nmsg   = opener.document.SCORE.savemsgN.value;");
-    pDoc.write("  var usrctr = document.msgcenter.usrctr.value;");
-    pDoc.write("  var newval = opener.document.SCORE[\\"newmsg\\"+usrctr];");
-    pDoc.write("  newval.value = opener.checkEntities(document.msgcenter.newmsg.value);");
-
-    pDoc.write("  var msgchk = \\"\\";");
-    pDoc.write("  if (document.msgcenter.subchk.checked) {");
-    pDoc.write("     msgchk = \\"msgsub,\\";");
-    pDoc.write("  }");
-    pDoc.write("  var includemsg = 0;");
-    pDoc.write("  for (var i=1; i<=nmsg; i++) {");
-    pDoc.write("      var opnmsg = opener.document.SCORE[\\"savemsg\\"+i];");
-    pDoc.write("      var frmmsg = document.msgcenter[\\"msg\\"+i];");
-    pDoc.write("      opnmsg.value = opener.checkEntities(frmmsg.value);");
-    pDoc.write("      var showflg = opener.document.SCORE[\\"shownOnce\\"+i];");
-    pDoc.write("      showflg.value = \\"1\\";");
-    pDoc.write("      var chkbox = document.msgcenter[\\"msgn\\"+i];");
-    pDoc.write("      if (chkbox.checked) {");
-    pDoc.write("         msgchk += \\"savemsg\\"+i+\\",\\";");
-    pDoc.write("         includemsg = 1;");
-    pDoc.write("      }");
-    pDoc.write("  }");
-    pDoc.write("  if (document.msgcenter.newmsgchk.checked) {");
-    pDoc.write("     msgchk += \\"newmsg\\"+usrctr;");
-    pDoc.write("     includemsg = 1;");
-    pDoc.write("  }");
-    pDoc.write("  imgformname = opener.document.SCORE[\\"mailicon\\"+usrctr];");
-    pDoc.write("  imgformname.src = \\"$iconpath/\\"+((includemsg) ? \\"mailto.gif\\" : \\"mailbkgrd.gif\\");");
-    pDoc.write("  var includemsg = opener.document.SCORE[\\"includemsg\\"+usrctr];");
-    pDoc.write("  includemsg.value = msgchk;");
-
-    pDoc.write("  self.close()");
-
-    pDoc.write("}");
-
-    pDoc.write("<");
-    pDoc.write("/script>");
-
-    pDoc.write("</head><body bgcolor=white>");
+    pDoc.write('$start_page_msg_central');
 
     pDoc.write("<form action=\\"inactive\\" name=\\"msgcenter\\">");
     pDoc.write("<input value=\\""+usrctr+"\\" name=\\"usrctr\\" type=\\"hidden\\">");
-    pDoc.write("<font color=\\"green\\" size=+1>&nbsp;Compose Message for \"+fullname+\"</font><br><br>");
+    pDoc.write("<h3><span class=\\"LC_info\\">&nbsp;Compose Message for \"+fullname+\"</span></h3><br /><br />");
 
     pDoc.write("<table border=0 width=100%><tr><td bgcolor=\\"#777777\\">");
     pDoc.write("<table border=0 width=100%><tr bgcolor=\\"#ddffff\\">");
@@ -1233,9 +1515,9 @@ sub sub_page_kw_js {
     pDoc.write("</table>");
     pDoc.write("</td></tr></table>&nbsp;");
     pDoc.write("<input type=\\"button\\" value=\\"Save\\" onClick=\\"javascript:checkInput()\\">&nbsp;&nbsp;");
-    pDoc.write("<input type=\\"button\\" value=\\"Cancel\\" onClick=\\"self.close()\\"><br><br>");
+    pDoc.write("<input type=\\"button\\" value=\\"Cancel\\" onClick=\\"self.close()\\"><br /><br />");
     pDoc.write("</form>");
-    pDoc.write("</body></html>");
+    pDoc.write('$end_page_msg_central');
     pDoc.close();
 }
 
@@ -1281,28 +1563,9 @@ sub sub_page_kw_js {
     hwdWin.focus();
     var hDoc = hwdWin.document;
     hDoc.$docopen;
-    hDoc.write("<html><head>");
-    hDoc.write("<title>Highlight Central</title>");
-
-    hDoc.write("<script language=javascript>");
-    hDoc.write("function updateChoice(flag) {");
-    hDoc.write("  opener.document.SCORE.kwclr.value = opener.radioSelection(document.hlCenter.kwdclr);");
-    hDoc.write("  opener.document.SCORE.kwsize.value = opener.radioSelection(document.hlCenter.kwdsize);");
-    hDoc.write("  opener.document.SCORE.kwstyle.value = opener.radioSelection(document.hlCenter.kwdstyle);");
-    hDoc.write("  opener.document.SCORE.refresh.value = \\"on\\";");
-    hDoc.write("  if (opener.document.SCORE.keywords.value!=\\"\\"){");
-    hDoc.write("     opener.document.SCORE.submit();");
-    hDoc.write("  }");
-    hDoc.write("  self.close()");
-    hDoc.write("}");
-
-    hDoc.write("<");
-    hDoc.write("/script>");
-
-    hDoc.write("</head><body bgcolor=white>");
-
+    hDoc.write('$start_page_highlight_central');
     hDoc.write("<form action=\\"inactive\\" name=\\"hlCenter\\">");
-    hDoc.write("<font color=\\"green\\" size=+1>&nbsp;Keyword Highlight Options</font><br><br>");
+    hDoc.write("<h3><span class=\\"LC_info\\">&nbsp;Keyword Highlight Options</span></h3><br /><br />");
 
     hDoc.write("<table border=0 width=100%><tr><td bgcolor=\\"#777777\\">");
     hDoc.write("<table border=0 width=100%><tr bgcolor=\\"#ddffff\\">");
@@ -1326,9 +1589,9 @@ sub sub_page_kw_js {
     hDoc.write("</table>");
     hDoc.write("</td></tr></table>&nbsp;");
     hDoc.write("<input type=\\"button\\" value=\\"Save\\" onClick=\\"javascript:updateChoice(1)\\">&nbsp;&nbsp;");
-    hDoc.write("<input type=\\"button\\" value=\\"Cancel\\" onClick=\\"self.close()\\"><br><br>");
+    hDoc.write("<input type=\\"button\\" value=\\"Cancel\\" onClick=\\"self.close()\\"><br /><br />");
     hDoc.write("</form>");
-    hDoc.write("</body></html>");
+    hDoc.write('$end_page_highlight_central');
     hDoc.close();
   }
 
@@ -1336,45 +1599,51 @@ sub sub_page_kw_js {
 SUBJAVASCRIPT
 }
 
+sub get_increment {
+    my $increment = $env{'form.increment'};
+    if ($increment != 1 && $increment != .5 && $increment != .25 &&
+        $increment != .1) {
+        $increment = 1;
+    }
+    return $increment;
+}
+
 #--- displays the grading box, used in essay type problem and grading by page/sequence
 sub gradeBox {
     my ($request,$symb,$uname,$udom,$counter,$partid,$record) = @_;
-
-    my $checkIcon = '<img src="'.$request->dir_config('lonIconsURL').
+    my $checkIcon = '<img alt="'.&mt('Check Mark').
+	'" src="'.$request->dir_config('lonIconsURL').
 	'/check.gif" height="16" border="0" />';
-
     my $wgt    = &Apache::lonnet::EXT('resource.'.$partid.'.weight',$symb,$udom,$uname);
     my $wgtmsg = ($wgt > 0 ? '(problem weight)' : 
-		  '<font color="red">problem weight assigned by computer</font>');
+		  '<span class="LC_info">problem weight assigned by computer</span>');
     $wgt       = ($wgt > 0 ? $wgt : '1');
     my $score  = ($$record{'resource.'.$partid.'.awarded'} eq '' ?
-		  '' : $$record{'resource.'.$partid.'.awarded'}*$wgt);
+		  '' : &compute_points($$record{'resource.'.$partid.'.awarded'},$wgt));
     my $result='<input type="hidden" name="WGT'.$counter.'_'.$partid.'" value="'.$wgt.'" />'."\n";
-
-    my $display_part=&get_display_part($partid,undef,$symb);
-
+    my $display_part=&get_display_part($partid,$symb);
     my %last_resets = &get_last_resets($symb,$env{'request.course.id'},
 				       [$partid]);
     my $aggtries = $$record{'resource.'.$partid.'.tries'};
     if ($last_resets{$partid}) {
         $aggtries = &get_num_tries($record,$last_resets{$partid},$partid);
     }
-
     $result.='<table border="0"><tr><td>'.
 	'<b>Part: </b>'.$display_part.' <b>Points: </b></td><td>'."\n";
-
     my $ctr = 0;
+    my $thisweight = 0;
+    my $increment = &get_increment();
     $result.='<table border="0"><tr>'."\n";  # display radio buttons in a nice table 10 across
-    while ($ctr<=$wgt) {
-	$result.= '<td><nobr><input type="radio" name="RADVAL'.$counter.'_'.$partid.'" '.
+    while ($thisweight<=$wgt) {
+	$result.= '<td><span style="white-space: nowrap;"><label><input type="radio" name="RADVAL'.$counter.'_'.$partid.'" '.
 	    'onclick="javascript:writeBox(this.form,\''.$counter.'_'.$partid.'\','.
-	    $ctr.')" value="'.$ctr.'" '.
-	    ($score eq $ctr ? 'checked':'').' /> '.$ctr."</nobr></td>\n";
+	    $thisweight.')" value="'.$thisweight.'" '.
+	    ($score eq $thisweight ? 'checked="checked"':'').' /> '.$thisweight."</label></span></td>\n";
 	$result.=(($ctr+1)%10 == 0 ? '</tr><tr>' : '');
+        $thisweight += $increment;
 	$ctr++;
     }
     $result.='</tr></table>';
-
     $result.='</td><td>&nbsp;<b>or</b>&nbsp;</td>'."\n";
     $result.='<td><input type="text" name="GD_BOX'.$counter.'_'.$partid.'"'.
 	($score ne ''? ' value = "'.$score.'"':'').' size="4" '.
@@ -1383,18 +1652,17 @@ sub gradeBox {
     $result.='<td>/'.$wgt.' '.$wgtmsg.
 	($$record{'resource.'.$partid.'.solved'} eq 'correct_by_student' ? '&nbsp;'.$checkIcon : '').
 	' </td><td>'."\n";
-
     $result.='<select name="GD_SEL'.$counter.'_'.$partid.'" '.
 	'onChange="javascript:clearRadBox(this.form,\''.$counter.'_'.$partid.'\')" >'."\n";
     if ($$record{'resource.'.$partid.'.solved'} eq 'excused') {
-	$result.='<option> </option>'.
-	    '<option selected="on">excused</option>';
+	$result.='<option></option>'.
+	    '<option selected="selected">excused</option>';
     } else {
-	$result.='<option selected="on"> </option>'.
+	$result.='<option selected="selected"></option>'.
 	    '<option>excused</option>';
     }
     $result.='<option>reset status</option></select>'."\n";
-    $result.="&nbsp&nbsp\n";
+    $result.="&nbsp;&nbsp;\n";
     $result.='<input type="hidden" name="stores'.$counter.'_'.$partid.'" value="" />'."\n".
 	'<input type="hidden" name="oldpts'.$counter.'_'.$partid.'" value="'.$score.'" />'."\n".
 	'<input type="hidden" name="solved'.$counter.'_'.$partid.'" value="'.
@@ -1404,25 +1672,67 @@ sub gradeBox {
         '<input type="hidden" name="aggtries'.$counter.'_'.$partid.'" value="'.
         $aggtries.'" />'."\n";
     $result.='</td></tr></table>'."\n";
+    $result.=&handback_box($symb,$uname,$udom,$counter,$partid,$record);
     return $result;
 }
 
+sub handback_box {
+    my ($symb,$uname,$udom,$counter,$partid,$record) = @_;
+    my ($partlist,$handgrade,$responseType) = &response_type($symb);
+    my (@respids);
+     my @part_response_id = &flatten_responseType($responseType);
+    foreach my $part_response_id (@part_response_id) {
+    	my ($part,$resp) = @{ $part_response_id };
+        if ($part eq $partid) {
+            push(@respids,$resp);
+        }
+    }
+    my $result;
+    foreach my $respid (@respids) {
+	my $prefix = $counter.'_'.$partid.'_'.$respid.'_';
+	my $files=&get_submitted_files($udom,$uname,$partid,$respid,$record);
+	next if (!@$files);
+	my $file_counter = 1;
+	foreach my $file (@$files) {
+	    if ($file =~ /\/portfolio\//) {
+    	        my ($file_path, $file_disp) = ($file =~ m|(.+/)(.+)$|);
+    	        my ($name,$version,$ext) = &file_name_version_ext($file_disp);
+    	        $file_disp = "$name.$ext";
+    	        $file = $file_path.$file_disp;
+    	        $result.=&mt('Return commented version of [_1] to student.',
+    			 '<span class="LC_filename">'.$file_disp.'</span>');
+    	        $result.='<input type="file"   name="'.$prefix.'returndoc'.$file_counter.'" />'."\n";
+    	        $result.='<input type="hidden" name="'.$prefix.'origdoc'.$file_counter.'" value="'.$file.'" /><br />';
+    	        $result.='(File will be uploaded when you click on Save & Next below.)<br />';
+    	        $file_counter++;
+	    }
+	}
+    }
+    return $result;    
+}
+
 sub show_problem {
-    my ($request,$symb,$uname,$udom,$removeform,$viewon,$mode) = @_;
+    my ($request,$symb,$uname,$udom,$removeform,$viewon,$mode,$form) = @_;
     my $rendered;
+    my %form = ((ref($form) eq 'HASH')? %{$form} : ());
+    &Apache::lonxml::remember_problem_counter();
     if ($mode eq 'both' or $mode eq 'text') {
 	$rendered=&Apache::loncommon::get_student_view($symb,$uname,$udom,
-					     $env{'request.course.id'});
+						       $env{'request.course.id'},
+						       undef,\%form);
     }
     if ($removeform) {
 	$rendered=~s|<form(.*?)>||g;
 	$rendered=~s|</form>||g;
-	$rendered=~s|name="submit"|name="would_have_been_submit"|g;
+	$rendered=~s|(<input[^>]*name\s*=\s*"?)(\w+)("?)|$1would_have_been_$2$3|g;
     }
     my $companswer;
     if ($mode eq 'both' or $mode eq 'answer') {
-	$companswer=&Apache::loncommon::get_student_answers($symb,$uname,$udom,
-						    $env{'request.course.id'});
+	&Apache::lonxml::restore_problem_counter();
+	$companswer=
+	    &Apache::loncommon::get_student_answers($symb,$uname,$udom,
+						    $env{'request.course.id'},
+						    %form);
     }
     if ($removeform) {
 	$companswer=~s|<form(.*?)>||g;
@@ -1453,24 +1763,71 @@ sub show_problem {
     return $result;
 }
 
+sub files_exist {
+    my ($r, $symb) = @_;
+    my @students = &Apache::loncommon::get_env_multiple('form.stuinfo');
+
+    foreach my $student (@students) {
+        my ($uname,$udom,$fullname) = split(/:/,$student);
+        my %record = &Apache::lonnet::restore($symb,$env{'request.course.id'},
+					      $udom,$uname);
+        my ($string,$timestamp)= &get_last_submission(\%record);
+        foreach my $submission (@$string) {
+            my ($partid,$respid) =
+		($submission =~ /^resource\.([^\.]*)\.([^\.]*)\.submission/);
+            my $files=&get_submitted_files($udom,$uname,$partid,$respid,
+					   \%record);
+            return 1 if (@$files);
+        }
+    }
+    return 0;
+}
+
+sub download_all_link {
+    my ($r,$symb) = @_;
+    my $all_students = 
+	join("\n", &Apache::loncommon::get_env_multiple('form.stuinfo'));
+
+    my $parts =
+	join("\n",&Apache::loncommon::get_env_multiple('form.vPart'));
+
+    my $identifier = &Apache::loncommon::get_cgi_id();
+    &Apache::lonnet::appenv('cgi.'.$identifier.'.students' => $all_students,
+                            'cgi.'.$identifier.'.symb' => $symb,
+                            'cgi.'.$identifier.'.parts' => $parts,);
+    $r->print('<a href="/cgi-bin/multidownload.pl?'.$identifier.'">'.
+	      &mt('Download All Submitted Documents').'</a>');
+    return
+}
+
+sub build_section_inputs {
+    my $section_inputs;
+    if ($env{'form.section'} eq '') {
+        $section_inputs .= '<input type="hidden" name="section" value="all" />'."\n";
+    } else {
+        my @sections = &Apache::loncommon::get_env_multiple('form.section');
+        foreach my $section (@sections) {
+            $section_inputs .= '<input type="hidden" name="section" value="'.$section.'" />'."\n";
+        }
+    }
+    return $section_inputs;
+}
+
 # --------------------------- show submissions of a student, option to grade 
 sub submission {
     my ($request,$counter,$total) = @_;
-
-    (my $url=$env{'form.url'})=~s-^http://($ENV{'SERVER_NAME'}|$ENV{'HTTP_HOST'})--;
     my ($uname,$udom)     = ($env{'form.student'},$env{'form.userdom'});
     $udom = ($udom eq '' ? $env{'user.domain'} : $udom); #has form.userdom changed for a student?
     my $usec = &Apache::lonnet::getsection($udom,$uname,$env{'request.course.id'});
     $env{'form.fullname'} = &Apache::loncommon::plainname($uname,$udom,'lastname') if $env{'form.fullname'} eq '';
-
-    my $symb=($env{'form.symb'} ne '' ? $env{'form.symb'} : (&Apache::lonnet::symbread($url)));
-    if ($symb eq '') { $request->print("Unable to handle ambiguous references:$url:."); return ''; }
+    my $symb = &get_symb($request); 
+    if ($symb eq '') { $request->print("Unable to handle ambiguous references:."); return ''; }
 
     if (!&canview($usec)) {
-	$request->print('<font color="red">Unable to view requested student.('.
-			$uname.'@'.$udom.' in section '.$usec.' in course id '.
-			$env{'request.course.id'}.')</font>');
-	$request->print(&show_grading_menu_form($symb,$url));
+	$request->print('<span class="LC_warning">Unable to view requested student.('.
+			$uname.':'.$udom.' in section '.$usec.' in course id '.
+			$env{'request.course.id'}.')</span>');
+	$request->print(&show_grading_menu_form($symb));
 	return;
     }
 
@@ -1478,18 +1835,22 @@ sub submission {
     if (!$env{'form.vProb'}) { $env{'form.vProb'} = 'yes'; }
     if (!$env{'form.vAns'}) { $env{'form.vAns'} = 'yes'; }
     my $last = ($env{'form.lastSub'} eq 'last' ? 'last' : '');
-    my $checkIcon = '<img src="'.$request->dir_config('lonIconsURL').
+    my $checkIcon = '<img alt="'.&mt('Check Mark').
+	'" src="'.$request->dir_config('lonIconsURL').
 	'/check.gif" height="16" border="0" />';
 
+    my %old_essays;
     # header info
     if ($counter == 0) {
 	&sub_page_js($request);
 	&sub_page_kw_js($request) if ($env{'form.handgrade'} eq 'yes');
 	$env{'form.probTitle'} = $env{'form.probTitle'} eq '' ? 
 	    &Apache::lonnet::gettitle($symb) : $env{'form.probTitle'};
-
-	$request->print('<h3>&nbsp;<font color="#339933">Submission Record</font></h3>'."\n".
-			'<font size=+1>&nbsp;<b>Resource: </b>'.$env{'form.probTitle'}.'</font>'."\n");
+	if ($env{'form.handgrade'} eq 'yes' && &files_exist($request, $symb)) {
+	    &download_all_link($request, $symb);
+	}
+	$request->print('<h3>&nbsp;<span class="LC_info">Submission Record</span></h3>'."\n".
+			'<h4>&nbsp;<b>Resource: </b>'.$env{'form.probTitle'}.'</h4>'."\n");
 
 	if ($env{'form.handgrade'} eq 'no') {
 	    my $checkMark='<br /><br />&nbsp;<b>Note:</b> Part(s) graded correct by the computer is marked with a '.
@@ -1508,9 +1869,10 @@ sub submission {
 	    } elsif ($env{'form.vAns'} eq 'yes') {
 		$mode='answer';
 	    }
+	    &Apache::lonxml::clear_problem_counter();
 	    $request->print(&show_problem($request,$symb,$uname,$udom,0,1,$mode));
 	}
-	
+
 	# kwclr is the only variable that is guaranteed to be non blank 
         # if this subroutine has been called once.
 	my %keyhash = ();
@@ -1529,25 +1891,24 @@ sub submission {
 	    $env{'form.savemsgN'} = $keyhash{$symb.'_savemsgN'} ne '' ? $keyhash{$symb.'_savemsgN'} : '0';
 	}
 	my $overRideScore = $env{'form.overRideScore'} eq '' ? 'no' : $env{'form.overRideScore'};
-
-	$request->print('<form action="/adm/grades" method="post" name="SCORE">'."\n".
+	my $stu_status = join(':',&Apache::loncommon::get_env_multiple('form.Status'));
+	$request->print('<form action="/adm/grades" method="post" name="SCORE" enctype="multipart/form-data">'."\n".
 			'<input type="hidden" name="command"    value="handgrade" />'."\n".
 			'<input type="hidden" name="saveState"  value="'.$env{'form.saveState'}.'" />'."\n".
-			'<input type="hidden" name="Status"     value="'.$env{'form.Status'}.'" />'."\n".
+			'<input type="hidden" name="Status"     value="'.$stu_status.'" />'."\n".
 			'<input type="hidden" name="overRideScore" value="'.$overRideScore.'" />'."\n".
 			'<input type="hidden" name="probTitle"  value="'.$env{'form.probTitle'}.'" />'."\n".
 			'<input type="hidden" name="refresh"    value="off" />'."\n".
 			'<input type="hidden" name="studentNo"  value="" />'."\n".
 			'<input type="hidden" name="gradeOpt"   value="" />'."\n".
-			'<input type="hidden" name="symb"       value="'.$symb.'" />'."\n".
-			'<input type="hidden" name="url"        value="'.$url.'" />'."\n".
+			'<input type="hidden" name="symb"       value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n".
 			'<input type="hidden" name="showgrading" value="'.$env{'form.showgrading'}.'" />'."\n".
 			'<input type="hidden" name="vProb"      value="'.$env{'form.vProb'}.'" />'."\n".
 			'<input type="hidden" name="vAns"       value="'.$env{'form.vAns'}.'" />'."\n".
 			'<input type="hidden" name="lastSub"    value="'.$env{'form.lastSub'}.'" />'."\n".
-			'<input type="hidden" name="section"    value="'.$env{'form.section'}.'">'."\n".
-			'<input type="hidden" name="submitonly" value="'.$env{'form.submitonly'}.'">'."\n".
-			'<input type="hidden" name="handgrade"  value="'.$env{'form.handgrade'}.'">'."\n".
+			&build_section_inputs().
+			'<input type="hidden" name="submitonly" value="'.$env{'form.submitonly'}.'" />'."\n".
+			'<input type="hidden" name="handgrade"  value="'.$env{'form.handgrade'}.'" />'."\n".
 			'<input type="hidden" name="NCT"'.
 			' value="'.($env{'form.NTSTU'} ne '' ? $env{'form.NTSTU'} : $total+1).'" />'."\n");
 	if ($env{'form.handgrade'} eq 'yes') {
@@ -1581,24 +1942,29 @@ sub submission {
 #
 	    $request->print(<<KEYWORDS);
 &nbsp;<b>Keyword Options:</b>&nbsp;
-<a href="javascript:keywords(document.SCORE)"; TARGET=_self>List</a>&nbsp; &nbsp;
+<a href="javascript:keywords(document.SCORE);" target="_self">List</a>&nbsp; &nbsp;
 <a href="#" onMouseDown="javascript:getSel(); return false"
  CLASS="page">Paste Selection to List</a>&nbsp; &nbsp;
-<a href="javascript:kwhighlight()"; TARGET=_self>Highlight Attribute</a><br /><br />
+<a href="javascript:kwhighlight();" target="_self">Highlight Attribute</a><br /><br />
 KEYWORDS
 #
 # Load the other essays for similarity check
 #
-            my $essayurl=&Apache::lonnet::declutter($url);
-	    my ($adom,$aname,$apath)=($essayurl=~/^(\w+)\/(\w+)\/(.*)$/);
-	    $apath=&Apache::lonnet::escape($apath);
+            my (undef,undef,$essayurl) = &Apache::lonnet::decode_symb($symb);
+	    my ($adom,$aname,$apath)=($essayurl=~/^($LONCAPA::domain_re)\/($LONCAPA::username_re)\/(.*)$/);
+	    $apath=&escape($apath);
 	    $apath=~s/\W/\_/gs;
-	    %oldessays=&Apache::lonnet::dump('nohist_essay_'.$apath,$adom,$aname);
+	    %old_essays=&Apache::lonnet::dump('nohist_essay_'.$apath,$adom,$aname);
         }
     }
 
+# This is where output for one specific student would start
+    my $bgcolor='#DDEEDD';
+    if (int($counter/2) eq $counter) { $bgcolor='#DDDDEE'; }
+    $request->print("\n\n".
+                    '<p><table border="2"><tr><th bgcolor="'.$bgcolor.'">'.$env{'form.fullname'}.'</th></tr><tr><td bgcolor="'.$bgcolor.'">');
+
     if ($env{'form.vProb'} eq 'all' or $env{'form.vAns'} eq 'all') {
-	$request->print('<br /><br /><br />') if ($counter > 0);
 	my $mode;
 	if ($env{'form.vProb'} eq 'all' && $env{'form.vAns'} eq 'all') {
 	    $mode='both';
@@ -1607,16 +1973,17 @@ KEYWORDS
 	} elsif ($env{'form.vAns'} eq 'all') {
 	    $mode='answer';
 	}
+	&Apache::lonxml::clear_problem_counter();
 	$request->print(&show_problem($request,$symb,$uname,$udom,1,1,$mode));
     }
 
     my %record = &Apache::lonnet::restore($symb,$env{'request.course.id'},$udom,$uname);
-    my ($partlist,$handgrade,$responseType) = &response_type($url,$symb);
+    my ($partlist,$handgrade,$responseType) = &response_type($symb);
 
     # Display student info
     $request->print(($counter == 0 ? '' : '<br />'));
-    my $result='<table border="0" width=100%><tr><td bgcolor="#777777">'."\n".
-	'<table border="0" width=100%><tr bgcolor="#edffff"><td>'."\n";
+    my $result='<table border="0" width="100%"><tr><td bgcolor="#777777">'."\n".
+	'<table border="0" width="100%"><tr bgcolor="#edffff"><td>'."\n";
 
     $result.='<b>Fullname: </b>'.&nameUserString(undef,$env{'form.fullname'},$uname,$udom).'<br />'."\n";
     $result.='<input type="hidden" name="name'.$counter.
@@ -1695,9 +2062,13 @@ KEYWORDS
 	    $lastsubonly.='<tr><td bgcolor="#ffffe6">'.$$string[0]; 
 	} else {
 	    my %seenparts;
-	    for my $part (sort keys(%$handgrade)) {
-		my ($partid,$respid) = split(/_/,$part);
-		my $display_part=&get_display_part($partid,$url,$symb);
+	    my @part_response_id = &flatten_responseType($responseType);
+	    foreach my $part (@part_response_id) {
+		next if ($env{'form.lastSub'} eq 'hdgrade' 
+			 && $$handgrade{$$part[0].'_'.$$part[1]} ne 'yes');
+
+		my ($partid,$respid) = @{ $part };
+		my $display_part=&get_display_part($partid,$symb);
 		if ($env{"form.$uname:$udom:$partid:submitted_by"}) {
 		    if (exists($seenparts{$partid})) { next; }
 		    $seenparts{$partid}=1;
@@ -1705,7 +2076,7 @@ KEYWORDS
 			' <b>Collaborative submission by:</b> '.
 			'<a href="javascript:viewSubmitter(\''.
 			$env{"form.$uname:$udom:$partid:submitted_by"}.
-			'\')"; TARGET=_self>'.
+			'\');" target="_self">'.
 			$$fullname{$env{"form.$uname:$udom:$partid:submitted_by"}}.'</a><br />';
 		    $request->print($submitby);
 		    next;
@@ -1713,26 +2084,35 @@ KEYWORDS
 		my $responsetype = $responseType->{$partid}->{$respid};
 		if (!exists($record{"resource.$partid.$respid.submission"})) {
 		    $lastsubonly.='<tr><td bgcolor="#ffffe6"><b>Part:</b> '.
-			$display_part.' <font color="#999999">( ID '.$respid.
-			' )</font>&nbsp; &nbsp;'.
-			'<font color="red">Nothing submitted - no attempts</font><br /><br />';
+			$display_part.' <span class="LC_internal_info">( ID '.$respid.
+			' )</span>&nbsp; &nbsp;'.
+			'<span class="LC_warning">Nothing submitted - no attempts</span><br /><br />';
 		    next;
 		}
 		foreach (@$string) {
 		    my ($partid,$respid) = /^resource\.([^\.]*)\.([^\.]*)\.submission/;
-		    if ($part ne ($partid.'_'.$respid)) { next; }
+		    if (join('_',@{$part}) ne ($partid.'_'.$respid)) { next; }
 		    my ($ressub,$subval) = split(/:/,$_,2);
 		    # Similarity check
 		    my $similar='';
 		    if($env{'form.checkPlag'}){
 			my ($oname,$odom,$ocrsid,$oessay,$osim)=
-			    &most_similar($uname,$udom,$subval);
+			    &most_similar($uname,$udom,$subval,\%old_essays);
 			if ($osim) {
 			    $osim=int($osim*100.0);
-			    $similar="<hr /><h3><font color=\"#FF0000\">Essay".
-				" is $osim% similar to an essay by ".
-				&Apache::loncommon::plainname($oname,$odom).
-				'</font></h3><blockquote><i>'.
+			    my %old_course_desc = 
+				&Apache::lonnet::coursedescription($ocrsid,
+								   {'one_time' => 1});
+
+			    $similar="<hr /><h3><span class=\"LC_warning\">".
+				&mt('Essay is [_1]% similar to an essay by [_2] ([_3]:[_4]) in course [_5] (course id [_6]:[_7])',
+				    $osim,
+				    &Apache::loncommon::plainname($oname,$odom),
+				    $oname,$odom,
+				    $old_course_desc{'description'},
+				    $old_course_desc{'num'},
+				    $old_course_desc{'domain'}).
+				'</span></h3><blockquote><i>'.
 				&keywords_highlight($oessay).
 				'</i></blockquote><hr />';
 			}
@@ -1740,29 +2120,19 @@ KEYWORDS
 		    my $order=&get_order($partid,$respid,$symb,$uname,$udom);
 		    if ($env{'form.lastSub'} eq 'lastonly' || 
 			($env{'form.lastSub'} eq 'hdgrade' && 
-			 $$handgrade{$part} eq 'yes')) {
-			my $display_part=&get_display_part($partid,$url,$symb);
+			 $$handgrade{$$part[0].'_'.$$part[1]} eq 'yes')) {
+			my $display_part=&get_display_part($partid,$symb);
 			$lastsubonly.='<tr><td bgcolor="#ffffe6"><b>Part:</b> '.
-			    $display_part.' <font color="#999999">( ID '.$respid.
-			    ' )</font>&nbsp; &nbsp;';
-			my @files;
-			if ($record{"resource.$partid.$respid.portfiles"}) {
-			    my $file_url = '/uploaded/'.$udom.'/'.$uname.'/portfolio';
-			    foreach my $file (split(',',$record{"resource.$partid.$respid.portfiles"})) {
-				push(@files,$file_url.$file);
-			    
-				&Apache::lonnet::logthis("found a portfolio file".$record{"resource.$partid.$respid.portfiles"});
-				&Apache::lonnet::logthis("uploaded URL file".$record{"resource.$partid.$respid.uploadedurl"});
-			    }
-			}
-			if ($record{"resource.$partid.$respid.uploadedurl"}) {
-			    push(@files,$record{"resource.$partid.$respid.uploadedurl"});
-			}
-			if (@files) {
-			    $lastsubonly.='<br /><font color="red" size="1">Like all files provided by users, this file may contain virusses</font><br />';
-			    foreach my $file (@files) {
+			    $display_part.' <span class="LC_internal_info">( ID '.$respid.
+			    ' )</span>&nbsp; &nbsp;';
+			my $files=&get_submitted_files($udom,$uname,$partid,$respid,\%record);
+			if (@$files) {
+			    $lastsubonly.='<br /><span class="LC_warning">Like all files provided by users, this file may contain virusses</span><br />';
+			    my $file_counter = 0;
+			    foreach my $file (@$files) {
+			        $file_counter ++;
 				&Apache::lonnet::allowuploaded('/adm/grades',$file);
-				$lastsubonly.='<br /><a href="'.$file.'" target="lonGRDs"><img src="'.&Apache::loncommon::icon($file).'" border=0"> '.$file.'</a>';
+				$lastsubonly.='<br /><a href="'.$file.'?rawmode=1" target="lonGRDs"><img src="'.&Apache::loncommon::icon($file).'" border=0"> '.$file.'</a>';
 			    }
 			    $lastsubonly.='<br />';
 			}
@@ -1777,7 +2147,7 @@ KEYWORDS
 	$lastsubonly.='</td></tr><tr bgcolor="#ffffff"><td>'."\n";
 	$request->print($lastsubonly);
     } elsif ($env{'form.lastSub'} eq 'datesub') {
-	my (undef,$responseType,undef,$parts) = &showResourceInfo($url);
+	my (undef,$responseType,undef,$parts) = &showResourceInfo($symb);
 	$request->print(&displaySubByDates($symb,\%record,$parts,$responseType,$checkIcon,$uname,$udom));
     } elsif ($env{'form.lastSub'} =~ /^(last|all)$/) {
 	$request->print(&Apache::loncommon::get_previous_attempt($symb,$uname,$udom,
@@ -1793,11 +2163,11 @@ KEYWORDS
     if ($env{'form.showgrading'} eq '' || (!&canmodify($usec))) {
 	my $toGrade.='<input type="button" value="Grade Student" '.
 	    'onClick="javascript:checksubmit(this.form,\'Grade Student\',\''
-	    .$counter.'\');" TARGET=_self> &nbsp;'."\n" if (&canmodify($usec));
+	    .$counter.'\');" target="_self" /> &nbsp;'."\n" if (&canmodify($usec));
 	$toGrade.='</td></tr></table></td></tr></table>'."\n";
 	if (($env{'form.command'} eq 'submission') || 
 	    ($env{'form.command'} eq 'processGroup' && $counter == $total)) {
-	    $toGrade.='</form>'.&show_grading_menu_form($symb,$url) 
+	    $toGrade.='</form>'.&show_grading_menu_form($symb); 
 	}
 	$request->print($toGrade);
 	return;
@@ -1817,26 +2187,39 @@ KEYWORDS
 	$result='<input type="hidden" name="includemsg'.$counter.'" value="" />'."\n".
 	    '<input type="hidden" name="newmsg'.$counter.'" value="" />'."\n";
 	$result.='&nbsp;<a href="javascript:msgCenter(document.SCORE,'.$counter.
-	    ',\''.$msgfor.'\')"; TARGET=_self>'.
-	    'Compose Message to student'.(scalar(@col_fullnames) >= 1 ? 's' : '').'</a> &nbsp;'.
+	    ',\''.$msgfor.'\');" target="_self">'.
+	    &mt('Compose message to student').(scalar(@col_fullnames) >= 1 ? 's' : '').'</a><label> ('.
+	    &mt('incl. grades').' <input type="checkbox" name="withgrades'.$counter.'" /></label>)'.
 	    '<img src="'.$request->dir_config('lonIconsURL').
 	    '/mailbkgrd.gif" width="14" height="10" name="mailicon'.$counter.'" />'."\n".
-	    '<br />&nbsp;(Message will be sent when you click on Save & Next below.)'."\n" 
-	    if ($env{'form.handgrade'} eq 'yes');
+	    '<br />&nbsp;('.
+	    &mt('Message will be sent when you click on Save & Next below.').")\n";
 	$request->print($result);
     }
+    if ($perm{'vgr'}) {
+	$request->print('<br />'.
+	    &Apache::loncommon::track_student_link(&mt('View recent activity'),
+						   $uname,$udom,'check'));
+    }
+    if ($perm{'opa'}) {
+	$request->print('<br />'.
+	    &Apache::loncommon::pprmlink(&mt('Set/Change parameters'),
+					 $uname,$udom,$symb,'check'));
+    }
 
     my %seen = ();
     my @partlist;
     my @gradePartRespid;
-    for (sort keys(%$handgrade)) {
-	my ($partid,$respid) = split(/_/);
+    my @part_response_id = &flatten_responseType($responseType);
+    foreach my $part_response_id (@part_response_id) {
+    	my ($partid,$respid) = @{ $part_response_id };
+	my $part_resp = join('_',@{ $part_response_id });
 	next if ($seen{$partid} > 0);
 	$seen{$partid}++;
-	next if ($$handgrade{$_} =~ /:no$/ && $env{'form.lastSub'} =~ /^(hdgrade)$/);
+	next if ($$handgrade{$part_resp} ne 'yes' 
+		 && $env{'form.lastSub'} eq 'hdgrade');
 	push @partlist,$partid;
 	push @gradePartRespid,$partid.'.'.$respid;
-
 	$request->print(&gradeBox($request,$symb,$uname,$udom,$counter,$partid,\%record));
     }
     $result='<input type="hidden" name="partlist'.$counter.
@@ -1851,26 +2234,33 @@ KEYWORDS
     }
     $request->print($result.'</td></tr></table></td></tr></table>'."\n");
 
+# Done with printing info for one student
+
+    $request->print('</td></tr></table></p>');
+
+
     # print end of form
     if ($counter == $total) {
 	my $endform='<table border="0"><tr><td>'."\n";
 	$endform.='<input type="button" value="Save & Next" '.
 	    'onClick="javascript:checksubmit(this.form,\'Save & Next\','.
-	    $total.','.scalar(@partlist).');" TARGET=_self> &nbsp;'."\n";
+	    $total.','.scalar(@partlist).');" target="_self" /> &nbsp;'."\n";
 	my $ntstu ='<select name="NTSTU">'.
 	    '<option>1</option><option>2</option>'.
 	    '<option>3</option><option>5</option>'.
 	    '<option>7</option><option>10</option></select>'."\n";
 	my $nsel = ($env{'form.NTSTU'} ne '' ? $env{'form.NTSTU'} : '1');
-	$ntstu =~ s/<option>$nsel</<option selected="on">$nsel</;
+	$ntstu =~ s/<option>$nsel</<option selected="selected">$nsel</;
 	$endform.=$ntstu.'student(s) &nbsp;&nbsp;';
 	$endform.='<input type="button" value="Previous" '.
-	    'onClick="javascript:checksubmit(this.form,\'Previous\');" TARGET=_self> &nbsp;'."\n".
+	    'onClick="javascript:checksubmit(this.form,\'Previous\');" target="_self" /> &nbsp;'."\n".
 	    '<input type="button" value="Next" '.
-	    'onClick="javascript:checksubmit(this.form,\'Next\');" TARGET=_self> &nbsp;';
+	    'onClick="javascript:checksubmit(this.form,\'Next\');" target="_self" /> &nbsp;';
 	$endform.='(Next and Previous (student) do not save the scores.)'."\n" ;
+        $endform.="<input type='hidden' value='".&get_increment().
+            "' name='increment' />";
 	$endform.='</td><tr></table></form>';
-	$endform.=&show_grading_menu_form($symb,$url);
+	$endform.=&show_grading_menu_form($symb);
 	$request->print($endform);
     }
     return '';
@@ -1884,22 +2274,27 @@ sub get_last_submission {
 	my %lasthash=();
 	my ($version);
 	for ($version=1;$version<=$$returnhash{'version'};$version++) {
-	    foreach (sort(split(/\:/,$$returnhash{$version.':keys'}))) {
-		$lasthash{$_}=$$returnhash{$version.':'.$_};
-		   $timestamp = scalar(localtime($$returnhash{$version.':timestamp'}));
+	    foreach my $key (sort(split(/\:/,
+					$$returnhash{$version.':keys'}))) {
+		$lasthash{$key}=$$returnhash{$version.':'.$key};
+		$timestamp = 
+		    scalar(localtime($$returnhash{$version.':timestamp'}));
 	    }
 	}
-	foreach ((keys %lasthash)) {
-	    if ($_ =~ /\.submission$/) {
-		my ($partid,$foo) = split(/submission$/,$_);
-		my $draft  = $lasthash{$partid.'awarddetail'} eq 'DRAFT' ?
-		    '<font color="red">Draft Copy</font> ' : '';
-		push @string, (join(':',$_,$draft.$lasthash{$_}));
-	    }
+	foreach my $key (keys(%lasthash)) {
+	    next if ($key !~ /\.submission$/);
+
+	    my ($partid,$foo) = split(/submission$/,$key);
+	    my $draft  = $lasthash{$partid.'awarddetail'} eq 'DRAFT' ?
+		'<span class="LC_warning">Draft Copy</span> ' : '';
+	    push(@string, join(':', $key, $draft.$lasthash{$key}));
 	}
     }
-    @string = $string[0] eq '' ? '<font color="red">Nothing submitted - no attempts.</font>' : @string;
-    return \@string,\$timestamp;
+    if (!@string) {
+	$string[0] =
+	    '<span class="LC_warning">Nothing submitted - no attempts.</span>';
+    }
+    return (\@string,\$timestamp);
 }
 
 #--- High light keywords, with style choosen by user.
@@ -1909,8 +2304,8 @@ sub keywords_highlight {
     my $styleon   = $env{'form.kwstyle'} eq ''  ? '' : $env{'form.kwstyle'};
     (my $styleoff = $styleon) =~ s/\</\<\//;
     my @keylist   = split(/[,\s+]/,$env{'form.keywords'});
-    foreach (@keylist) {
-	$string =~ s/\b\Q$_\E(\b|\.)/<font color\=$env{'form.kwclr'} $size\>$styleon$_$styleoff<\/font>/gi;
+    foreach my $keyword (@keylist) {
+	$string =~ s/\b\Q$keyword\E(\b|\.)/<font color\=$env{'form.kwclr'} $size\>$styleon$keyword$styleoff<\/font>/gi;
     }
     return $string;
 }
@@ -1918,57 +2313,78 @@ sub keywords_highlight {
 #--- Called from submission routine
 sub processHandGrade {
     my ($request) = shift;
-    my $url    = $env{'form.url'};
-    my $symb   = $env{'form.symb'};
+    my $symb   = &get_symb($request);
+    my (undef,undef,$url) = &Apache::lonnet::decode_symb($symb);
     my $button = $env{'form.gradeOpt'};
     my $ngrade = $env{'form.NCT'};
     my $ntstu  = $env{'form.NTSTU'};
+    my $cdom   = $env{'course.'.$env{'request.course.id'}.'.domain'};
+    my $cnum   = $env{'course.'.$env{'request.course.id'}.'.num'};
+
     if ($button eq 'Save & Next') {
 	my $ctr = 0;
 	while ($ctr < $ngrade) {
 	    my ($uname,$udom) = split(/:/,$env{'form.unamedom'.$ctr});
-	    my ($errorflag,$pts,$wgt) = &saveHandGrade($request,$url,$symb,$uname,$udom,$ctr);
+	    my ($errorflag,$pts,$wgt) = &saveHandGrade($request,$symb,$uname,$udom,$ctr);
 	    if ($errorflag eq 'no_score') {
 		$ctr++;
 		next;
 	    }
 	    if ($errorflag eq 'not_allowed') {
-		$request->print("<font color=\"red\">Not allowed to modify grades for $uname:$udom</font>");
+		$request->print("<span class=\"LC_warning\">Not allowed to modify grades for $uname:$udom</span>");
 		$ctr++;
 		next;
 	    }
 	    my $includemsg = $env{'form.includemsg'.$ctr};
 	    my ($subject,$message,$msgstatus) = ('','','');
+	    my $restitle = &Apache::lonnet::gettitle($symb);
+            my ($feedurl,$showsymb) =
+		&get_feedurl_and_symb($symb,$uname,$udom);
+	    my $messagetail;
 	    if ($includemsg =~ /savemsg|newmsg\Q$ctr\E/) {
-		$subject = $env{'form.msgsub'} if ($includemsg =~ /^msgsub/);
+		$subject = $env{'form.msgsub'} if ($includemsg =~ /msgsub/);
+		unless ($subject=~/\w/) { $subject=&mt('Grading Feedback'); }
+		$subject.=' ['.$restitle.']';
 		my (@msgnum) = split(/,/,$includemsg);
 		foreach (@msgnum) {
 		    $message.=$env{'form.'.$_} if ($_ =~ /savemsg|newmsg/ && $_ ne '');
 		}
 		$message =&Apache::lonfeedback::clear_out_html($message);
-		$message.="\n\nPoint".($pts > 1 ? 's':'').' awarded = '.$pts.' out of '.$wgt;
-		$message.=" for <a href=\"".
-		    &Apache::lonnet::clutter($url).
-		    "?symb=$symb\">$env{'form.probTitle'}</a>";
-		$msgstatus = &Apache::lonmsg::user_normal_msg ($uname,$udom,
-							       $env{'form.msgsub'},$message);
+		if ($env{'form.withgrades'.$ctr}) {
+		    $message.="\n\nPoint".($pts > 1 ? 's':'').' awarded = '.$pts.' out of '.$wgt;
+		    $messagetail = " for <a href=\"".
+		                   $feedurl."?symb=$showsymb\">$env{'form.probTitle'}</a>";
+		}
+		$msgstatus = 
+                    &Apache::lonmsg::user_normal_msg($uname,$udom,$subject,
+						     $message.$messagetail,
+                                                     undef,$feedurl,undef,
+                                                     undef,undef,$showsymb,
+                                                     $restitle);
+		$request->print('<br />'.&mt('Sending message to [_1]:[_2]',$uname,$udom).': '.
+				$msgstatus);
 	    }
 	    if ($env{'form.collaborator'.$ctr}) {
 		my @collabstrs=&Apache::loncommon::get_env_multiple("form.collaborator$ctr");
 		foreach my $collabstr (@collabstrs) {
 		    my ($part,@collaborators) = split(/:/,$collabstr);
-		    foreach (@collaborators) {
+		    foreach my $collaborator (@collaborators) {
 			my ($errorflag,$pts,$wgt) = 
-			    &saveHandGrade($request,$url,$symb,$_,$udom,$ctr,
+			    &saveHandGrade($request,$symb,$collaborator,$udom,$ctr,
 					   $env{'form.unamedom'.$ctr},$part);
 			if ($errorflag eq 'not_allowed') {
-			    $request->print("<font color=\"red\">Not allowed to modify grades for $_:$udom</font>");
+			    $request->print("<span class=\"LC_error\">".&mt('Not allowed to modify grades for [_1]',"$collaborator:$udom")."</span>");
 			    next;
-			} else {
-			    if ($message ne '') {
-				$msgstatus = &Apache::lonmsg::user_normal_msg($_,$udom,$env{'form.msgsub'},$message);
+			} elsif ($message ne '') {
+			    my ($baseurl,$showsymb) = 
+				&get_feedurl_and_symb($symb,$collaborator,
+						      $udom);
+			    if ($env{'form.withgrades'.$ctr}) {
+				$messagetail = " for <a href=\"".
+                                    $baseurl."?symb=$showsymb\">$env{'form.probTitle'}</a>";
 			    }
-			    
+			    $msgstatus = 
+				&Apache::lonmsg::user_normal_msg($collaborator,$udom,$subject,$message.$messagetail,undef,$baseurl,undef,undef,undef,$showsymb,$restitle);
 			}
 		    }
 		}
@@ -2014,9 +2430,7 @@ sub processHandGrade {
 	$env{'form.savemsgN'} = --$idx;
 	$keyhash{$symb.'_savemsgN'} = $env{'form.savemsgN'};
 	my $putresult = &Apache::lonnet::put
-	    ('nohist_handgrade',\%keyhash,
-	     $env{'course.'.$env{'request.course.id'}.'.domain'},
-	     $env{'course.'.$env{'request.course.id'}.'.num'});
+	    ('nohist_handgrade',\%keyhash,$cdom,$cnum);
     }
     # Called by Save & Refresh from Highlight Attribute Window
     my (undef,undef,$fullname) = &getclasslist($env{'form.section'},'1');
@@ -2040,7 +2454,7 @@ sub processHandGrade {
 
 # Go directly to grade student - from submission or link from chart page
     if ($button eq 'Grade Student') {
-	(undef,undef,$env{'form.handgrade'},undef,undef) = &showResourceInfo($url);
+	(undef,undef,$env{'form.handgrade'},undef,undef) = &showResourceInfo($symb);
 	my $processUser = $env{'form.unamedom'.$env{'form.studentNo'}};
 	($env{'form.student'},$env{'form.userdom'}) = split(/:/,$processUser);
 	$env{'form.fullname'} = $$fullname{$processUser};
@@ -2060,7 +2474,13 @@ sub processHandGrade {
 
     my (@parsedlist,@nextlist);
     my ($nextflg) = 0;
-    foreach (sort {lc($$fullname{$a}) cmp lc($$fullname{$b}) } keys %$fullname) {
+    foreach (sort 
+	     {
+		 if (lc($$fullname{$a}) ne lc($$fullname{$b})) {
+		     return (lc($$fullname{$a}) cmp lc($$fullname{$b}));
+		 }
+		 return $a cmp $b;
+	     } (keys(%$fullname))) {
 	if ($nextflg == 1 && $button =~ /Next$/) {
 	    push @parsedlist,$_;
 	}
@@ -2072,13 +2492,21 @@ sub processHandGrade {
     }
     $ctr = 0;
     @parsedlist = reverse @parsedlist if ($button eq 'Previous');
-    my ($partlist) = &response_type($url);
+    my ($partlist) = &response_type($symb);
     foreach my $student (@parsedlist) {
 	my $submitonly=$env{'form.submitonly'};
 	my ($uname,$udom) = split(/:/,$student);
+	
+	if ($submitonly eq 'queued') {
+	    my %queue_status = 
+		&Apache::bridgetask::get_student_status($symb,$cdom,$cnum,
+							$udom,$uname);
+	    next if (!defined($queue_status{'gradingqueue'}));
+	}
+
 	if ($submitonly =~ /^(yes|graded|incorrect)$/) {
 #	    my %record = &Apache::lonnet::restore($symb,$env{'request.course.id'},$udom,$uname);
-	    my %status=&student_gradeStatus($url,$symb,$udom,$uname,$partlist);
+	    my %status=&student_gradeStatus($symb,$udom,$uname,$partlist);
 	    my $submitted = 0;
 	    my $ungraded = 0;
 	    my $incorrect = 0;
@@ -2114,10 +2542,10 @@ sub processHandGrade {
 	$ctr++;
     }
     if ($total < 0) {
-	my $the_end = '<h3><font color="red">LON-CAPA User Message</font></h3><br />'."\n";
+	my $the_end = '<h3><span class="LC_info">LON-CAPA User Message</span></h3><br />'."\n";
 	$the_end.='<b>Message: </b> No more students for this section or class.<br /><br />'."\n";
 	$the_end.='Click on the button below to return to the grading menu.<br /><br />'."\n";
-	$the_end.=&show_grading_menu_form ($symb,$url);
+	$the_end.=&show_grading_menu_form($symb);
 	$request->print($the_end);
     }
     return '';
@@ -2125,19 +2553,20 @@ sub processHandGrade {
 
 #---- Save the score and award for each student, if changed
 sub saveHandGrade {
-    my ($request,$url,$symb,$stuname,$domain,$newflg,$submitter,$part) = @_;
-    my @v_flag;
+    my ($request,$symb,$stuname,$domain,$newflg,$submitter,$part) = @_;
+    my @version_parts;
     my $usec = &Apache::lonnet::getsection($domain,$stuname,
 					   $env{'request.course.id'});
     if (!&canmodify($usec)) { return('not_allowed'); }
-    my %record     = &Apache::lonnet::restore($symb,$env{'request.course.id'},$domain,$stuname);
+    my %record = &Apache::lonnet::restore($symb,$env{'request.course.id'},$domain,$stuname);
     my @parts_graded;
     my %newrecord  = ();
     my ($pts,$wgt) = ('','');
     my %aggregate = ();
     my $aggregateflag = 0;
-    foreach my $new_part (split(/:/,$env{'form.partlist'.$newflg})) {
-	#collaborator may vary for different parts
+    my @parts = split(/:/,$env{'form.partlist'.$newflg});
+    foreach my $new_part (@parts) {
+	#collaborator ($submi may vary for different parts
 	if ($submitter && $new_part ne $part) { next; }
 	my $dropMenu = $env{'form.GD_SEL'.$newflg.'_'.$new_part};
 	if ($dropMenu eq 'excused') {
@@ -2146,7 +2575,7 @@ sub saveHandGrade {
 		if (exists($record{'resource.'.$new_part.'.awarded'})) {
 		    $newrecord{'resource.'.$new_part.'.awarded'} = '';
 		}
-	    $newrecord{'resource.'.$new_part.'.regrader'}="$env{'user.name'}:$env{'user.domain'}";
+	        $newrecord{'resource.'.$new_part.'.regrader'}="$env{'user.name'}:$env{'user.domain'}";
 	    }
 	} elsif ($dropMenu eq 'reset status'
 		 && exists($record{'resource.'.$new_part.'.solved'})) { #don't bother if no old records -> no attempts
@@ -2167,7 +2596,7 @@ sub saveHandGrade {
 
             my $solvedstatus = $record{'resource.'.$new_part.'.solved'};
             if ($aggtries > 0) {
-                &decrement($symb,$new_part,\%aggregate,$aggtries,$totaltries,$solvedstatus);
+                &decrement_aggs($symb,$new_part,\%aggregate,$aggtries,$totaltries,$solvedstatus);
                 $aggregateflag = 1;
             }
 	} elsif ($dropMenu eq '') {
@@ -2182,6 +2611,7 @@ sub saveHandGrade {
 	    my $partial= $pts/$wgt;
 	    if ($partial eq $record{'resource.'.$new_part.'.awarded'}) {
 		#do not update score for part if not changed.
+                &handback_files($request,$symb,$stuname,$domain,$newflg,$new_part,\%newrecord);
 		next;
 	    } else {
 	        push @parts_graded, $new_part;
@@ -2207,23 +2637,145 @@ sub saveHandGrade {
 		"$env{'user.name'}:$env{'user.domain'}";
 	}
 	# unless problem has been graded, set flag to version the submitted files
-	unless ($record{'resource.'.$new_part.'.solved'} =~ /^correct_/  || $record{'resource.'.$new_part.'.solved'} eq 'incorrect_by_override') {
-	    push (@v_flag,$new_part);
+	unless ($record{'resource.'.$new_part.'.solved'} =~ /^correct_/  || 
+	        $record{'resource.'.$new_part.'.solved'} eq 'incorrect_by_override' ||
+	        $dropMenu eq 'reset status')
+	   {
+	    push (@version_parts,$new_part);
 	}
     }
-    if (scalar(keys(%newrecord)) > 0) {
-        if (scalar(@v_flag)) {
-            &version_portfiles(\%record, \@parts_graded, $env{'request.course.id'}, $symb, $domain, $stuname, \@v_flag);
+    my $cdom = $env{'course.'.$env{'request.course.id'}.'.domain'};
+    my $cnum = $env{'course.'.$env{'request.course.id'}.'.num'};
+
+    if (%newrecord) {
+        if (@version_parts) {
+            my @changed_keys = &version_portfiles(\%record, \@parts_graded, 
+                                $env{'request.course.id'}, $symb, $domain, $stuname, \@version_parts);
+	    @newrecord{@changed_keys} = @record{@changed_keys};
+	    foreach my $new_part (@version_parts) {
+		&handback_files($request,$symb,$stuname,$domain,$newflg,
+				$new_part,\%newrecord);
+	    }
         }
 	&Apache::lonnet::cstore(\%newrecord,$symb,
 				$env{'request.course.id'},$domain,$stuname);
+	&check_and_remove_from_queue(\@parts,\%record,\%newrecord,$symb,
+				     $cdom,$cnum,$domain,$stuname);
     }
     if ($aggregateflag) {
         &Apache::lonnet::cinc('nohist_resourcetracker',\%aggregate,
-                  $env{'course.'.$env{'request.course.id'}.'.domain'},
-                  $env{'course.'.$env{'request.course.id'}.'.num'});
+			      $cdom,$cnum);
+    }
+    return ('',$pts,$wgt);
+}
+
+sub check_and_remove_from_queue {
+    my ($parts,$record,$newrecord,$symb,$cdom,$cnum,$domain,$stuname) = @_;
+    my @ungraded_parts;
+    foreach my $part (@{$parts}) {
+	if (    $record->{   'resource.'.$part.'.awarded'} eq ''
+	     && $record->{   'resource.'.$part.'.solved' } ne 'excused'
+	     && $newrecord->{'resource.'.$part.'.awarded'} eq ''
+	     && $newrecord->{'resource.'.$part.'.solved' } ne 'excused'
+		) {
+	    push(@ungraded_parts, $part);
+	}
+    }
+    if ( !@ungraded_parts ) {
+	&Apache::bridgetask::remove_from_queue('gradingqueue',$symb,$cdom,
+					       $cnum,$domain,$stuname);
+    }
+}
+
+sub handback_files {
+    my ($request,$symb,$stuname,$domain,$newflg,$new_part,$newrecord) = @_;
+    my $portfolio_root = &propath($domain,$stuname).'/userfiles/portfolio';
+    my ($partlist,$handgrade,$responseType) = &response_type($symb);
+
+    my @part_response_id = &flatten_responseType($responseType);
+    foreach my $part_response_id (@part_response_id) {
+    	my ($part_id,$resp_id) = @{ $part_response_id };
+	my $part_resp = join('_',@{ $part_response_id });
+            if (($env{'form.'.$newflg.'_'.$part_resp.'_returndoc1'}) && ($new_part == $part_id)) {
+                # if multiple files are uploaded names will be 'returndoc2','returndoc3'
+                my $file_counter = 1;
+		my $file_msg;
+                while ($env{'form.'.$newflg.'_'.$part_resp.'_returndoc'.$file_counter}) {
+                    my $fname=$env{'form.'.$newflg.'_'.$part_resp.'_returndoc'.$file_counter.'.filename'};
+                    my ($directory,$answer_file) = 
+                        ($env{'form.'.$newflg.'_'.$part_resp.'_origdoc'.$file_counter} =~ /^(.*?)([^\/]*)$/);
+                    my ($answer_name,$answer_ver,$answer_ext) =
+		        &file_name_version_ext($answer_file);
+		    my ($portfolio_path) = ($directory =~ /^.+$stuname\/portfolio(.*)/);
+		    my @dir_list = &Apache::lonnet::dirlist($portfolio_path,$domain,$stuname,$portfolio_root);
+		    my $version = &get_next_version($answer_name, $answer_ext, \@dir_list);
+                    # fix file name
+                    my ($save_file_name) = (($directory.$answer_name.".$version.".$answer_ext) =~ /^.+\/${stuname}\/(.*)/);
+                    my $result=&Apache::lonnet::finishuserfileupload($stuname,$domain,
+            	                                $newflg.'_'.$part_resp.'_returndoc'.$file_counter,
+            	                                $save_file_name);
+                    if ($result !~ m|^/uploaded/|) {
+                        $request->print('<span class="LC_error">An error occurred ('.$result.
+                        ') while trying to upload '.$newflg.'_'.$part_resp.'_returndoc'.$file_counter.'</span><br />');
+                    } else {
+                        # mark the file as read only
+                        my @files = ($save_file_name);
+                        my @what = ($symb,$env{'request.course.id'},'handback');
+                        &Apache::lonnet::mark_as_readonly($domain,$stuname,\@files,\@what);
+			if (exists($$newrecord{"resource.$new_part.$resp_id.handback"})) {
+			    $$newrecord{"resource.$new_part.$resp_id.handback"}.=',';
+			}
+                        $$newrecord{"resource.$new_part.$resp_id.handback"} .= $save_file_name;
+			$file_msg.= "\n".'<br /><span class="LC_filename"><a href="/uploaded/'."$domain/$stuname/".$save_file_name.'">'.$save_file_name."</a></span><br />";
+
+                    }
+                    $request->print("<br />".$fname." will be the uploaded file name");
+                    $request->print(" ".$env{'form.'.$newflg.'_'.$part_resp.'_origdoc'.$file_counter});
+                    $file_counter++;
+                }
+		my $subject = "File Handed Back by Instructor ";
+		my $message = "A file has been returned that was originally submitted in reponse to: <br />";
+		$message .= "<strong>".&Apache::lonnet::gettitle($symb)."</strong><br />";
+		$message .= ' The returned file(s) are named: '. $file_msg;
+		$message .= " and can be found in your portfolio space.";
+		my ($feedurl,$showsymb) = 
+		    &get_feedurl_and_symb($symb,$domain,$stuname);
+                my $restitle = &Apache::lonnet::gettitle($symb);
+		my $msgstatus = 
+                   &Apache::lonmsg::user_normal_msg($stuname,$domain,$subject.
+			 ' (File Returned) ['.$restitle.']',$message,undef,
+                         $feedurl,undef,undef,undef,$showsymb,$restitle);
+            }
+        }
+    return;
+}
+
+sub get_feedurl_and_symb {
+    my ($symb,$uname,$udom) = @_;
+    my (undef,undef,$url) = &Apache::lonnet::decode_symb($symb);
+    $url = &Apache::lonnet::clutter($url);
+    my $encrypturl=&Apache::lonnet::EXT('resource.0.encrypturl',
+					$symb,$udom,$uname);
+    if ($encrypturl =~ /^yes$/i) {
+	&Apache::lonenc::encrypted(\$url,1);
+	&Apache::lonenc::encrypted(\$symb,1);
+    }
+    return ($url,$symb);
+}
+
+sub get_submitted_files {
+    my ($udom,$uname,$partid,$respid,$record) = @_;
+    my @files;
+    if ($$record{"resource.$partid.$respid.portfiles"}) {
+        my $file_url = '/uploaded/'.$udom.'/'.$uname.'/portfolio';
+        foreach my $file (split(',',$$record{"resource.$partid.$respid.portfiles"})) {
+    	    push(@files,$file_url.$file);
+        }
+    }
+    if ($$record{"resource.$partid.$respid.uploadedurl"}) {
+        push(@files,$$record{"resource.$partid.$respid.uploadedurl"});
     }
-    return '',$pts,$wgt;
+    return (\@files);
 }
 
 # ----------- Provides number of tries since last reset.
@@ -2287,58 +2839,92 @@ sub get_last_resets {
 
 # ----------- Handles creating versions for portfolio files as answers
 sub version_portfiles {
-    my ($record, $parts_graded, $courseid, $symb, $domain, $stuname, $v_flag) = @_;
+    my ($record, $parts_graded, $courseid, $symb, $domain, $stu_name, $v_flag) = @_;
     my $version_parts = join('|',@$v_flag);
+    my @returned_keys;
     my $parts = join('|', @$parts_graded);
-    my $portfolio_root = &Apache::loncommon::propath($domain,
-						 $stuname).
-						'/userfiles/portfolio';
+    my $portfolio_root = &propath($domain,$stu_name).
+	'/userfiles/portfolio';
     foreach my $key (keys(%$record)) {
         my $new_portfiles;
-	
         if ($key =~ /^resource\.($version_parts)\./ && $key =~ /\.portfiles$/ ) {
-            my @v_portfiles;
-            my @portfiles = split(/,/,$$record{$key});
-            &Apache::lonnet::logthis("should be unmarking and remarking $key",@portfiles);
+            my @versioned_portfiles;
+            my @portfiles = split(/\s*,\s*/,$$record{$key});
             foreach my $file (@portfiles) {
-                &Apache::lonnet::unmark_as_readonly($domain,$stuname,[$symb,$env{'request.course.id'}],$file);
-                my ($directory,$answer_file) =($file =~ /^(.*?)([^\/]*$)/);
-                my $version = 0;
-                my @answer_file_parts = split(/\./, $answer_file);
-                my @dir_list = &Apache::lonnet::dirlist($directory,$domain,$stuname,$portfolio_root);
-                my @file_names;
-                my @file_name_parts;
-                foreach my $row (@dir_list) {
-                    @file_names = split(/\&/,$row,2);
-                    @file_name_parts = split(/\./, $file_names[0]);
-                    # ($file_name_parts[scalar @file_name_parts] eq $answer_file_parts[scalar @answer_file_parts])
-                    if (($file_name_parts[0] eq $answer_file_parts[0]) && 
-                        ($file_name_parts[-1] eq $answer_file_parts[-1])) {
-                        # gets here if filename and extension match, regardless of version
-                        if (scalar @file_name_parts == 3) { # a versioned file is found
-                            # so save it for later
-                            if ($file_name_parts[1] > $version) {$version = $file_name_parts[1]};
-                        }
-                    }
-                }
-                $version++;
-                $env{'form.copy'} = &Apache::lonnet::getfile("/uploaded/$domain/$stuname/portfolio$directory$answer_file");
-                if($env{'form.copy'} eq '-1') {
-                    &Apache::lonnet::logthis('problem getting file '.$directory.$answer_file);
-                } else {
-                   my $copy_result = &Apache::lonnet::finishuserfileupload($stuname,$domain,'copy',
-                                    '/portfolio'.$directory.$answer_file_parts[0].'.'.$version.'.'.$answer_file_parts[-1]);
-                    push(@v_portfiles, $answer_file_parts[0].'.'.$version.'.'.$answer_file_parts[-1]);
-                    &Apache::lonnet::mark_as_readonly($domain,$stuname,
-                                ['/portfolio'.$directory.$answer_file_parts[0].'.'.$version.'.'.$answer_file_parts[-1]],
-                                [$symb,$env{'request.course.id'},'graded']);
+                &Apache::lonnet::unmark_as_readonly($domain,$stu_name,[$symb,$env{'request.course.id'}],$file);
+                my ($directory,$answer_file) =($file =~ /^(.*?)([^\/]*)$/);
+		my ($answer_name,$answer_ver,$answer_ext) =
+		    &file_name_version_ext($answer_file);
+                my @dir_list = &Apache::lonnet::dirlist($directory,$domain,$stu_name,$portfolio_root);
+                my $version = &get_next_version($answer_name, $answer_ext, \@dir_list);
+                my $new_answer = &version_selected_portfile($domain, $stu_name, $directory, $answer_file, $version);
+                if ($new_answer ne 'problem getting file') {
+                    push(@versioned_portfiles, $directory.$new_answer);
+                    &Apache::lonnet::mark_as_readonly($domain,$stu_name,
+                        [$directory.$new_answer],
+                        [$symb,$env{'request.course.id'},'graded']);
                 }
             }
-            $$record{$key} = join(',',@v_portfiles);
+            $$record{$key} = join(',',@versioned_portfiles);
+            push(@returned_keys,$key);
         }
     } 
-    return 'ok';   
-    
+    return (@returned_keys);   
+}
+
+sub get_next_version {
+    my ($answer_name, $answer_ext, $dir_list) = @_;
+    my $version;
+    foreach my $row (@$dir_list) {
+        my ($file) = split(/\&/,$row,2);
+        my ($file_name,$file_version,$file_ext) =
+	    &file_name_version_ext($file);
+        if (($file_name eq $answer_name) && 
+	    ($file_ext eq $answer_ext)) {
+                # gets here if filename and extension match, regardless of version
+                if ($file_version ne '') {
+                # a versioned file is found  so save it for later
+                if ($file_version > $version) {
+		    $version = $file_version;
+	        }
+            }
+        }
+    } 
+    $version ++;
+    return($version);
+}
+
+sub version_selected_portfile {
+    my ($domain,$stu_name,$directory,$file_name,$version) = @_;
+    my ($answer_name,$answer_ver,$answer_ext) =
+        &file_name_version_ext($file_name);
+    my $new_answer;
+    $env{'form.copy'} = &Apache::lonnet::getfile("/uploaded/$domain/$stu_name/portfolio$directory$file_name");
+    if($env{'form.copy'} eq '-1') {
+        $new_answer = 'problem getting file';
+    } else {
+        $new_answer = $answer_name.'.'.$version.'.'.$answer_ext;
+        my $copy_result = &Apache::lonnet::finishuserfileupload(
+                            $stu_name,$domain,'copy',
+		        '/portfolio'.$directory.$new_answer);
+    }    
+    return ($new_answer);
+}
+
+sub file_name_version_ext {
+    my ($file)=@_;
+    my @file_parts = split(/\./, $file);
+    my ($name,$version,$ext);
+    if (@file_parts > 1) {
+	$ext=pop(@file_parts);
+	if (@file_parts > 1 && $file_parts[-1] =~ /^\d+$/) {
+	    $version=pop(@file_parts);
+	}
+	$name=join('.',@file_parts);
+    } else {
+	$name=join('.',@file_parts);
+    }
+    return($name,$version,$ext);
 }
 
 #--------------------------------------------------------------------------------------
@@ -2390,6 +2976,7 @@ sub viewgrades_js {
 	}
 	for (i=0;i<document.classgrade.total.value;i++) {
 	    var user = document.classgrade["ctr"+i].value;
+	    user = user.replace(new RegExp(':', 'g'),"_");
 	    var scorename = document.classgrade["GD_"+user+"_"+partid+"_awarded"];
 	    var saveval   = document.classgrade["GD_"+user+"_"+partid+"_solved_s"].value;
 	    var selname   = document.classgrade["GD_"+user+"_"+partid+"_solved"];
@@ -2417,6 +3004,7 @@ sub viewgrades_js {
 
 	    for (i=0;i<document.classgrade.total.value;i++) {
 		var user = document.classgrade["ctr"+i].value;
+		user = user.replace(new RegExp(':', 'g'),"_");
 		var scorename = document.classgrade["GD_"+user+"_"+partid+"_awarded"];
 		var saveval   = document.classgrade["GD_"+user+"_"+partid+"_solved_s"].value;
 		var selname   = document.classgrade["GD_"+user+"_"+partid+"_solved"];
@@ -2434,6 +3022,7 @@ sub viewgrades_js {
 	} else {
 	    for (i=0;i<document.classgrade.total.value;i++) {
 		var user = document.classgrade["ctr"+i].value;
+		user = user.replace(new RegExp(':', 'g'),"_");
 		var scorename = document.classgrade["GD_"+user+"_"+partid+"_awarded"];
 		var saveval   = document.classgrade["GD_"+user+"_"+partid+"_solved_s"].value;
 		var selname   = document.classgrade["GD_"+user+"_"+partid+"_solved"];
@@ -2492,6 +3081,7 @@ sub viewgrades_js {
 
 	    for (i=0;i<document.classgrade.total.value;i++) {
 		var user = document.classgrade["ctr"+i].value;
+		user = user.replace(new RegExp(':', 'g'),"_");
 		var resetscore = document.classgrade["GD_"+user+"_"+partid+"_awarded"];
 		resetscore.value = document.classgrade["GD_"+user+"_"+partid+"_awarded_s"].value;
 		var resettries = document.classgrade["GD_"+user+"_"+partid+"_tries"];
@@ -2516,7 +3106,7 @@ sub viewgrades {
     my ($request) = shift;
     &viewgrades_js($request);
 
-    my ($symb,$url) = ($env{'form.symb'},$env{'form.url'}); 
+    my ($symb) = &get_symb($request);
     #need to make sure we have the correct data for later EXT calls, 
     #thus invalidate the cache
     &Apache::lonnet::devalidatecourseresdata(
@@ -2524,45 +3114,48 @@ sub viewgrades {
                  $env{'course.'.$env{'request.course.id'}.'.domain'});
     &Apache::lonnet::clear_EXT_cache_status();
 
-    my $result='<h3><font color="#339933">'.&mt('Manual Grading').'</font></h3>';
-    $result.='<font size=+1><b>Current Resource: </b>'.$env{'form.probTitle'}.'</font>'."\n";
+    my $result='<h3><span class="LC_info">'.&mt('Manual Grading').'</span></h3>';
+    $result.='<h4><b>Current Resource: </b>'.$env{'form.probTitle'}.'</h4>'."\n";
 
     #view individual student submission form - called using Javascript viewOneStudent
-    $result.=&jscriptNform($url,$symb);
+    $result.=&jscriptNform($symb);
 
     #beginning of class grading form
+    my $stu_status = join(':',&Apache::loncommon::get_env_multiple('form.Status'));
     $result.= '<form action="/adm/grades" method="post" name="classgrade">'."\n".
-	'<input type="hidden" name="symb"    value="'.$symb.'" />'."\n".
-	'<input type="hidden" name="url"     value="'.$url.'" />'."\n".
+	'<input type="hidden" name="symb"    value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n".
 	'<input type="hidden" name="command" value="editgrades" />'."\n".
-	'<input type="hidden" name="section" value="'.$env{'form.section'}.'" />'."\n".
+	&build_section_inputs().
 	'<input type="hidden" name="saveState" value="'.$env{'form.saveState'}.'" />'."\n".
-	'<input type="hidden" name="Status" value="'.$env{'form.Status'}.'" />'."\n".
+	'<input type="hidden" name="Status" value="'.$env{'stu_status'}.'" />'."\n".
 	'<input type="hidden" name="probTitle" value="'.$env{'form.probTitle'}.'" />'."\n";
 
     my $sectionClass;
+    my $section_display = join (", ",&Apache::loncommon::get_env_multiple('form.section'));
     if ($env{'form.section'} eq 'all') {
 	$sectionClass='Class </h3>';
     } elsif ($env{'form.section'} eq 'none') {
-	$sectionClass='Students in no Section </h3>';
+	$sectionClass=&mt('Students in no Section').'</h3>';
     } else {
-	$sectionClass='Students in Section '.$env{'form.section'}.'</h3>';
+	$sectionClass=&mt('Students in Section(s) [_1]',$section_display).'</h3>';
     }
-    $result.='<h3>Assign Common Grade To '.$sectionClass;
+    $result.='<h3>'.&mt('Assign Common Grade To [_1]',$sectionClass);
     $result.= '<table border=0><tr><td bgcolor="#777777">'."\n".
 	'<table border=0><tr bgcolor="#ffffdd"><td>';
     #radio buttons/text box for assigning points for a section or class.
     #handles different parts of a problem
-    my ($partlist,$handgrade) = &response_type($url,$symb);
+    my ($partlist,$handgrade,$responseType) = &response_type($symb);
     my %weight = ();
     my $ctsparts = 0;
     $result.='<table border="0">';
     my %seen = ();
-    for (sort keys(%$handgrade)) {
-	my ($partid,$respid) = split (/_/,$_,2);
+    my @part_response_id = &flatten_responseType($responseType);
+    foreach my $part_response_id (@part_response_id) {
+    	my ($partid,$respid) = @{ $part_response_id };
+	my $part_resp = join('_',@{ $part_response_id });
 	next if $seen{$partid};
 	$seen{$partid}++;
-	my $handgrade=$$handgrade{$_};
+	my $handgrade=$$handgrade{$part_resp};
 	my $wgt = &Apache::lonnet::EXT('resource.'.$partid.'.weight',$symb);
 	$weight{$partid} = $wgt eq '' ? '1' : $wgt;
 
@@ -2570,14 +3163,14 @@ sub viewgrades {
 	    $ctsparts.'" value="'.$partid.'" />'."\n";
 	$result.='<input type="hidden" name="weight_'.
 	    $partid.'" value="'.$weight{$partid}.'" />'."\n";
-	my $display_part=&get_display_part($partid,$url,$symb);
+	my $display_part=&get_display_part($partid,$symb);
 	$result.='<tr><td><b>Part:</b> '.$display_part.'&nbsp; &nbsp;<b>Point:</b> </td><td>';
 	$result.='<table border="0"><tr>';  
 	my $ctr = 0;
 	while ($ctr<=$weight{$partid}) { # display radio buttons in a nice table 10 across
-	    $result.= '<td><input type="radio" name="RADVAL_'.$partid.'" '.
+	    $result.= '<td><label><input type="radio" name="RADVAL_'.$partid.'" '.
 		'onclick="javascript:writePoint(\''.$partid.'\','.$weight{$partid}.
-		','.$ctr.')" />'.$ctr."</td>\n";
+		','.$ctr.')" />'.$ctr."</label></td>\n";
 	    $result.=(($ctr+1)%10 == 0 ? '</tr><tr>' : '');
 	    $ctr++;
 	}
@@ -2589,7 +3182,7 @@ sub viewgrades {
 	$result.= '</td><td><select name="SELVAL_'.$partid.'"'.
 	    'onChange="javascript:writeRadText(\''.$partid.'\','.
 		$weight{$partid}.')"> '.
-	    '<option selected="on"> </option>'.
+	    '<option selected="selected"> </option>'.
 	    '<option>excused</option>'.
 	    '<option>reset status</option></select></td>'.
             '<td><label><input type="checkbox" name="FORCE_'.$partid.'" /> Override "Correct"</label></td></tr>'."\n";
@@ -2597,8 +3190,8 @@ sub viewgrades {
     }
     $result.='</table>'.'</td></tr></table>'.'</td></tr></table>'."\n".
 	'<input type="hidden" name="totalparts" value="'.$ctsparts.'" />';
-    $result.='<input type="button" value="Reset" '.
-	'onClick="javascript:resetEntry('.$ctsparts.');" TARGET=_self>';
+    $result.='<input type="button" value="Revert to Default" '.
+	'onClick="javascript:resetEntry('.$ctsparts.');" target="_self" />';
 
     #table listing all the students in a section/class
     #header of table
@@ -2606,7 +3199,8 @@ sub viewgrades {
     $result.= '<table border=0><tr><td bgcolor="#777777">'."\n".
 	'<table border=0><tr bgcolor="#deffff"><td>&nbsp;<b>No.</b>&nbsp;</td>'.
 	'<td>'.&nameUserString('header')."</td>\n";
-    my (@parts) = sort(&getpartlist($url,$symb));
+    my (@parts) = sort(&getpartlist($symb));
+    my (undef,undef,$url)=&Apache::lonnet::decode_symb($symb);
     my @partids = ();
     foreach my $part (@parts) {
 	my $display=&Apache::lonnet::metadata($url,$part.'.display');
@@ -2614,7 +3208,7 @@ sub viewgrades {
 	if  (!$display) { $display = &Apache::lonnet::metadata($url,$part.'.name'); }
 	my ($partid) = &split_part_type($part);
         push(@partids, $partid);
-	my $display_part=&get_display_part($partid,$url,$symb);
+	my $display_part=&get_display_part($partid,$symb);
 	if ($display =~ /^Partial Credit Factor/) {
 	    $result.='<td><b>Score Part:</b> '.$display_part.
 		' <br /><b>(weight = '.$weight{$partid}.')</b></td>'."\n";
@@ -2634,37 +3228,47 @@ sub viewgrades {
     #list all the students - with points and grade status
     my (undef,undef,$fullname) = &getclasslist($env{'form.section'},'1');
     my $ctr = 0;
-    foreach (sort {lc($$fullname{$a}) cmp lc($$fullname{$b}) } keys %$fullname) {
+    foreach (sort 
+	     {
+		 if (lc($$fullname{$a}) ne lc($$fullname{$b})) {
+		     return (lc($$fullname{$a}) cmp lc($$fullname{$b}));
+		 }
+		 return $a cmp $b;
+	     } (keys(%$fullname))) {
 	$ctr++;
-	$result.=&viewstudentgrade($url,$symb,$env{'request.course.id'},
+	$result.=&viewstudentgrade($symb,$env{'request.course.id'},
 				   $_,$$fullname{$_},\@parts,\%weight,$ctr,\%last_resets);
     }
     $result.='</table></td></tr></table>';
     $result.='<input type="hidden" name="total" value="'.$ctr.'" />'."\n";
     $result.='<input type="button" value="Save" '.
-	'onClick="javascript:submit();" TARGET=_self /></form>'."\n";
+	'onClick="javascript:submit();" target="_self" /></form>'."\n";
     if (scalar(%$fullname) eq 0) {
 	my $colspan=3+scalar(@parts);
-	$result='<font color="red">There are no students in section "'.$env{'form.section'}.
-	    '" with enrollment status "'.$env{'form.Status'}.'" to modify or grade.</font>';
+	my $section_display = join (", ",&Apache::loncommon::get_env_multiple('form.section'));
+        my $stu_status = join(' or ',&Apache::loncommon::get_env_multiple('form.Status'));
+	$result='<span class="LC_warning">'.
+	    &mt('There are no students in section(s) [_1] with enrollment status [_2] to modify or grade',
+	        $section_display, $stu_status).
+	    '</span>';
     }
-    $result.=&show_grading_menu_form($symb,$url);
+    $result.=&show_grading_menu_form($symb);
     return $result;
 }
 
 #--- call by previous routine to display each student
 sub viewstudentgrade {
-    my ($url,$symb,$courseid,$student,$fullname,$parts,$weight,$ctr,$last_resets) = @_;
+    my ($symb,$courseid,$student,$fullname,$parts,$weight,$ctr,$last_resets) = @_;
     my ($uname,$udom) = split(/:/,$student);
-    $student=~s/:/_/;
     my %record=&Apache::lonnet::restore($symb,$courseid,$udom,$uname);
     my %aggregates = (); 
     my $result='<tr bgcolor="#ffffdd"><td align="right">'.
 	'<input type="hidden" name="ctr'.($ctr-1).'" value="'.$student.'" />'.
 	"\n".$ctr.'&nbsp;</td><td>&nbsp;'.
 	'<a href="javascript:viewOneStudent(\''.$uname.'\',\''.$udom.
-	'\')"; TARGET=_self>'.$fullname.'</a> '.
-	'<font color="#999999">('.$uname.($env{'user.domain'} eq $udom ? '' : ':'.$udom).')</font></td>'."\n";
+	'\');" target="_self">'.$fullname.'</a> '.
+	'<span class="LC_internal_info">('.$uname.($env{'user.domain'} eq $udom ? '' : ':'.$udom).')</span></td>'."\n";
+    $student=~s/:/_/; # colon doen't work in javascript for names
     foreach my $apart (@$parts) {
 	my ($part,$type) = &split_part_type($apart);
 	my $score=$record{"resource.$part.$type"};
@@ -2685,7 +3289,7 @@ sub viewstudentgrade {
             $aggregates{$part} = 1;
         }
 	if ($type eq 'awarded') {
-	    my $pts = $score eq '' ? '' : $score*$$weight{$part};
+	    my $pts = $score eq '' ? '' : &compute_points($score,$$weight{$part});
 	    $result.='<input type="hidden" name="'.
 		'GD_'.$student.'_'.$part.'_awarded_s" value="'.$pts.'" />'."\n";
 	    $result.='<input type="text" name="'.
@@ -2700,8 +3304,8 @@ sub viewstudentgrade {
 	    $result.='&nbsp;<select name="'.
 		'GD_'.$student.'_'.$part.'_solved" '.
 		'onChange="javascript:changeOneScore(\''.$part.'\',\''.$student.'\')" >'."\n";
-	    $result.= (($status eq 'excused') ? '<option> </option><option selected="on">excused</option>' 
-		: '<option selected="on"> </option><option>excused</option>')."\n";
+	    $result.= (($status eq 'excused') ? '<option> </option><option selected="selected">excused</option>' 
+		: '<option selected="selected"> </option><option>excused</option>')."\n";
 	    $result.='<option>reset status</option>';
 	    $result.="</select>&nbsp;</td>\n";
 	} else {
@@ -2722,11 +3326,11 @@ sub viewstudentgrade {
 sub editgrades {
     my ($request) = @_;
 
-    my $symb=$env{'form.symb'};
-    my $url =$env{'form.url'};
-    my $title='<h3><font color="#339933">Current Grade Status</font></h3>';
-    $title.='<font size=+1><b>Current Resource: </b>'.$env{'form.probTitle'}.'</font><br />'."\n";
-    $title.='<font size=+1><b>Section: </b>'.$env{'form.section'}.'</font>'."\n";
+    my $symb=&get_symb($request);
+    my $section_display = join (", ",&Apache::loncommon::get_env_multiple('form.section'));
+    my $title='<h3><span class="LC_info">'.&mt('Current Grade Status').'</span></h3>';
+    $title.='<h4>'.&mt('<b>Current Resource: </b>[_1]',$env{'form.probTitle'}).'</h4><br />'."\n";
+    $title.='<h4>'.&mt('<b>Section: </b>[_1]',$section_display).'</h4>'."\n";
 
     my $result= '<table border="0"><tr><td bgcolor="#777777">'."\n";
     $result.= '<table border="0"><tr bgcolor="#deffff">'.
@@ -2747,7 +3351,7 @@ sub editgrades {
     my %columns = ();
     my ($i,$ctr,$count,$rec_update) = (0,0,0,0);
 
-    my (@parts) = sort(&getpartlist($url,$symb));
+    my (@parts) = sort(&getpartlist($symb));
     my $header;
     while ($ctr < $env{'form.totalparts'}) {
 	my $partid = $env{'form.partid_'.$ctr};
@@ -2755,6 +3359,7 @@ sub editgrades {
 	$weight{$partid} = $env{'form.weight_'.$partid};
 	$ctr++;
     }
+    my (undef,undef,$url) = &Apache::lonnet::decode_symb($symb);
     foreach my $partid (@partid) {
 	$header .= '<td align="center">&nbsp;<b>Old Score</b>&nbsp;</td>'.
 	    '<td align="center">&nbsp;<b>New Score</b>&nbsp;</td>';
@@ -2772,7 +3377,7 @@ sub editgrades {
 	}
     }
     foreach my $partid (@partid) {
-	my $display_part=&get_display_part($partid,$url,$symb);
+	my $display_part=&get_display_part($partid,$symb);
 	$result .= '<td colspan="'.$columns{$partid}.
 	    '" align="center"><b>Part:</b> '.$display_part.
 	    ' (Weight = '.$weight{$partid}.')</td>';
@@ -2786,20 +3391,19 @@ sub editgrades {
     for ($i=0; $i<$env{'form.total'}; $i++) {
 	my $line;
 	my $user = $env{'form.ctr'.$i};
-	my $usercolon = $user;
-	$usercolon =~s/_/:/;
-	my ($uname,$udom)=split(/_/,$user);
+	my ($uname,$udom)=split(/:/,$user);
 	my %newrecord;
 	my $updateflag = 0;
-	$line .= '<td>'.&nameUserString(undef,$$fullname{$usercolon},$uname,$udom).'</td>';
+	$line .= '<td>'.&nameUserString(undef,$$fullname{$user},$uname,$udom).'</td>';
 	my $usec=$classlist->{"$uname:$udom"}[5];
 	if (!&canmodify($usec)) {
 	    my $numcols=scalar(@partid)*4+2;
-	    $noupdate.=$line."<td colspan=\"$numcols\"><font color=\"red\">Not allowed to modify student</font></td></tr>";
+	    $noupdate.=$line."<td colspan=\"$numcols\"><span class=\"LC_warning\">Not allowed to modify student</span></td></tr>";
 	    next;
 	}
         my %aggregate = ();
         my $aggregateflag = 0;
+	$user=~s/:/_/; # colon doen't work in javascript for names
 	foreach (@partid) {
 	    my $old_aw    = $env{'form.GD_'.$user.'_'.$_.'_awarded_s'};
 	    my $old_part_pcr = $old_aw/($weight{$_} ne '0' ? $weight{$_}:1);
@@ -2819,13 +3423,14 @@ sub editgrades {
 	    my $dropMenu = $env{'form.GD_'.$user.'_'.$_.'_solved'};
 	    $score = 'excused' if (($dropMenu eq 'excused') && ($score ne 'excused'));
 
+	    $newrecord{'resource.'.$_.'.regrader'}=
+		"$env{'user.name'}:$env{'user.domain'}";
 	    if ($dropMenu eq 'reset status' &&
 		$old_score ne '') { # ignore if no previous attempts => nothing to reset
-		$newrecord{'resource.'.$_.'.tries'} = 0;
+		$newrecord{'resource.'.$_.'.tries'} = '';
 		$newrecord{'resource.'.$_.'.solved'} = '';
 		$newrecord{'resource.'.$_.'.award'} = '';
-		$newrecord{'resource.'.$_.'.awarded'} = 0;
-		$newrecord{'resource.'.$_.'.regrader'}="$env{'user.name'}:$env{'user.domain'}";
+		$newrecord{'resource.'.$_.'.awarded'} = '';
 		$updateflag = 1;
                 if ($env{'form.GD_'.$user.'_'.$_.'_aggtries'} > 0) {
                     my $aggtries = $env{'form.GD_'.$user.'_'.$_.'_aggtries'};
@@ -2863,10 +3468,38 @@ sub editgrades {
 	    }
 	}
 	$line.='</tr>'."\n";
+
+	my $cdom = $env{'course.'.$env{'request.course.id'}.'.domain'};
+	my $cnum = $env{'course.'.$env{'request.course.id'}.'.num'};
+
 	if ($updateflag) {
 	    $count++;
 	    &Apache::lonnet::cstore(\%newrecord,$symb,$env{'request.course.id'},
 				    $udom,$uname);
+
+	    if (&Apache::bridgetask::in_queue('gradingqueue',$symb,$cdom,
+					      $cnum,$udom,$uname)) {
+		# need to figure out if should be in queue.
+		my %record =  
+		    &Apache::lonnet::restore($symb,$env{'request.course.id'},
+					     $udom,$uname);
+		my $all_graded = 1;
+		my $none_graded = 1;
+		foreach my $part (@parts) {
+		    if ( $record{'resource.'.$part.'.awarded'} eq '' ) {
+			$all_graded = 0;
+		    } else {
+			$none_graded = 0;
+		    }
+		}
+
+		if ($all_graded || $none_graded) {
+		    &Apache::bridgetask::remove_from_queue('gradingqueue',
+							   $symb,$cdom,$cnum,
+							   $udom,$uname);
+		}
+	    }
+
 	    $result.='<tr bgcolor="#ffffde"><td align="right">&nbsp;'.$updateCtr.'&nbsp;</td>'.$line;
 	    $updateCtr++;
 	} else {
@@ -2875,8 +3508,7 @@ sub editgrades {
 	}
         if ($aggregateflag) {
             &Apache::lonnet::cinc('nohist_resourcetracker',\%aggregate,
-                      $env{'course.'.$env{'request.course.id'}.'.domain'},
-                      $env{'course.'.$env{'request.course.id'}.'.num'});
+				  $cdom,$cnum);
         }
     }
     if ($noupdate) {
@@ -2885,7 +3517,7 @@ sub editgrades {
 	$result .= '<tr bgcolor="#ffffff"><td align="center" colspan="'.$numcols.'">No Changes Occurred For the Students Below</td></tr><tr bgcolor="#ffffde">'.$noupdate;
     }
     $result .= '</table></td></tr></table>'."\n".
-	&show_grading_menu_form ($symb,$url);
+	&show_grading_menu_form ($symb);
     my $msg = '<br /><b>Number of records updated = '.$rec_update.
 	' for '.$count.' student'.($count <= 1 ? '' : 's').'.</b><br />'.
 	'<b>Total number of students = '.$env{'form.total'}.'</b><br />';
@@ -2896,7 +3528,7 @@ sub split_part_type {
     my ($partstr) = @_;
     my ($temp,@allparts)=split(/_/,$partstr);
     my $type=pop(@allparts);
-    my $part=join('.',@allparts);
+    my $part=join('_',@allparts);
     return ($part,$type);
 }
 
@@ -2988,7 +3620,7 @@ ENDPICK
 }
 
 sub csvuploadmap_header {
-    my ($request,$symb,$url,$datatoken,$distotal)= @_;
+    my ($request,$symb,$datatoken,$distotal)= @_;
     my $javascript;
     if ($env{'form.upfile_associate'} eq 'reverse') {
 	$javascript=&csvupload_javascript_reverse_associate();
@@ -2996,14 +3628,15 @@ sub csvuploadmap_header {
 	$javascript=&csvupload_javascript_forward_associate();
     }
 
-    my ($result) = &showResourceInfo($url,$env{'form.probTitle'});
+    my ($result) = &showResourceInfo($symb,$env{'form.probTitle'});
     my $checked=(($env{'form.noFirstLine'})?' checked="checked"':'');
     my $ignore=&mt('Ignore First Line');
+    $symb = &Apache::lonenc::check_encrypt($symb);
     $request->print(<<ENDPICK);
 <form method="post" enctype="multipart/form-data" action="/adm/grades" name="gradesupload">
-<h3><font color="#339933">Uploading Class Grades</font></h3>
+<h3><span class="LC_info">Uploading Class Grades</span></h3>
 $result
-<hr>
+<hr />
 <h3>Identify fields</h3>
 Total number of records found in file: $distotal <hr />
 Enter as many fields as you can. The system will inform you and bring you back
@@ -3018,7 +3651,6 @@ to this page if the data selected is ins
 <input type="hidden" name="upfile_associate" 
                                        value="$env{'form.upfile_associate'}" />
 <input type="hidden" name="symb"       value="$symb" />
-<input type="hidden" name="url"        value="$url" />
 <input type="hidden" name="saveState"  value="$env{'form.saveState'}" />
 <input type="hidden" name="probTitle"  value="$env{'form.probTitle'}" />
 <input type="hidden" name="command"    value="csvuploadoptions" />
@@ -3032,11 +3664,12 @@ ENDPICK
 }
 
 sub csvupload_fields {
-    my ($url,$symb) = @_;
-    my (@parts) = &getpartlist($url,$symb);
+    my ($symb) = @_;
+    my (@parts) = &getpartlist($symb);
     my @fields=(['ID','Student ID'],
 		['username','Student Username'],
 		['domain','Student Domain']);
+    my (undef,undef,$url) = &Apache::lonnet::decode_symb($symb);
     foreach my $part (sort(@parts)) {
 	my @datum;
 	my $display=&Apache::lonnet::metadata($url,$part.'.display');
@@ -3062,10 +3695,7 @@ sub csvuploadmap_footer {
 ENDPICK
 }
 
-sub upcsvScores_form {
-    my ($request) = shift;
-    my ($symb,$url)=&get_symb_and_url($request);
-    if (!$symb) {return '';}
+sub checkforfile_js {
     my $result =<<CSVFORMJS;
 <script type="text/javascript" language="javascript">
     function checkUpload(formname) {
@@ -3077,38 +3707,49 @@ sub upcsvScores_form {
     }
     </script>
 CSVFORMJS
+    return $result;
+}
+
+sub upcsvScores_form {
+    my ($request) = shift;
+    my ($symb)=&get_symb($request);
+    if (!$symb) {return '';}
+    my $result=&checkforfile_js();
     $env{'form.probTitle'} = &Apache::lonnet::gettitle($symb);
-    my ($table) = &showResourceInfo($url,$env{'form.probTitle'});
+    my ($table) = &showResourceInfo($symb,$env{'form.probTitle'});
     $result.=$table;
-    $result.='<br /><table width=100% border=0><tr><td bgcolor="#777777">'."\n";
-    $result.='<table width=100% border=0><tr bgcolor="#e6ffff"><td>'."\n";
-    $result.='&nbsp;<b>Specify a file containing the class scores for current resource'.
+    $result.='<br /><table width="100%" border="0"><tr><td bgcolor="#777777">'."\n";
+    $result.='<table width="100%" border="0"><tr bgcolor="#e6ffff"><td>'."\n";
+    $result.='&nbsp;<b>'.&mt('Specify a file containing the class scores for current resource').
 	'.</b></td></tr>'."\n";
     $result.='<tr bgcolor=#ffffe6><td>'."\n";
+    my $upload=&mt("Upload Scores");
     my $upfile_select=&Apache::loncommon::upfile_select_html();
     my $ignore=&mt('Ignore First Line');
+    $symb = &Apache::lonenc::check_encrypt($symb);
     $result.=<<ENDUPFORM;
 <form method="post" enctype="multipart/form-data" action="/adm/grades" name="gradesupload">
 <input type="hidden" name="symb" value="$symb" />
-<input type="hidden" name="url" value="$url" />
 <input type="hidden" name="command" value="csvuploadmap" />
 <input type="hidden" name="probTitle" value="$env{'form.probTitle'}" />
 <input type="hidden" name="saveState"  value="$env{'form.saveState'}" />
 $upfile_select
-<br /><input type="button" onClick="javascript:checkUpload(this.form);" value="Upload Scores" />
-<label><input type="checkbox" name="noFirstLine" />$ignore</lable>
+<br /><input type="button" onClick="javascript:checkUpload(this.form);" value="$upload" />
+<label><input type="checkbox" name="noFirstLine" />$ignore</label>
 </form>
 ENDUPFORM
-    $result.='</td></tr></table>'."\n";
+    $result.=&Apache::loncommon::help_open_topic("Course_Convert_To_CSV",
+                           &mt("How do I create a CSV file from a spreadsheet"))
+    .'</td></tr></table>'."\n";
     $result.='</td></tr></table><br /><br />'."\n";
-    $result.=&show_grading_menu_form($symb,$url);
+    $result.=&show_grading_menu_form($symb);
     return $result;
 }
 
 
 sub csvuploadmap {
     my ($request)= @_;
-    my ($symb,$url)=&get_symb_and_url($request);
+    my ($symb)=&get_symb($request);
     if (!$symb) {return '';}
 
     my $datatoken;
@@ -3120,10 +3761,10 @@ sub csvuploadmap {
     }
     my @records=&Apache::loncommon::upfile_record_sep();
     if ($env{'form.noFirstLine'}) { shift(@records); }
-    &csvuploadmap_header($request,$symb,$url,$datatoken,$#records+1);
+    &csvuploadmap_header($request,$symb,$datatoken,$#records+1);
     my ($i,$keyfields);
     if (@records) {
-	my @fields=&csvupload_fields($url,$symb);
+	my @fields=&csvupload_fields($symb);
 
 	if ($env{'form.upfile_associate'} eq 'reverse') {	
 	    &Apache::loncommon::csv_print_samples($request,\@records);
@@ -3135,32 +3776,38 @@ sub csvuploadmap {
 	    unshift(@fields,['none','']);
 	    $i=&Apache::loncommon::csv_samples_select_table($request,\@records,
 							    \@fields);
-	    my %sone=&Apache::loncommon::record_sep($records[0]);
-	    $keyfields=join(',',sort(keys(%sone)));
+            foreach my $rec (@records) {
+                my %temp = &Apache::loncommon::record_sep($rec);
+                if (%temp) {
+                    $keyfields=join(',',sort(keys(%temp)));
+                    last;
+                }
+            }
 	}
     }
     &csvuploadmap_footer($request,$i,$keyfields);
-    $request->print(&show_grading_menu_form($symb,$url));
+    $request->print(&show_grading_menu_form($symb));
 
     return '';
 }
 
 sub csvuploadoptions {
     my ($request)= @_;
-    my ($symb,$url)=&get_symb_and_url($request);
+    my ($symb)=&get_symb($request);
     my $checked=(($env{'form.noFirstLine'})?'1':'0');
     my $ignore=&mt('Ignore First Line');
     $request->print(<<ENDPICK);
 <form method="post" enctype="multipart/form-data" action="/adm/grades" name="gradesupload">
-<h3><font color="#339933">Uploading Class Grade Options</font></h3>
+<h3><span class="LC_info">Uploading Class Grade Options</span></h3>
 <input type="hidden" name="command"    value="csvuploadassign" />
-<input type="submit" value="Assign Grades" /><br />
+<!--
 <p>
 <label>
    <input type="checkbox" name="show_full_results" />
    Show a table of all changes
 </label>
 </p>
+-->
 <p>
 <label>
    <input type="checkbox" name="overwite_scores" checked="checked" />
@@ -3182,8 +3829,9 @@ ENDPICK
     }
     # FIXME do a check for any duplicated user ids...
     # FIXME do a check for any invalid user ids?...
-    $request->print("<hr /></form>\n");
-    $request->print(&show_grading_menu_form($symb,$url));
+    $request->print('<input type="submit" value="Assign Grades" /><br />
+<hr /></form>'."\n");
+    $request->print(&show_grading_menu_form($symb));
     return '';
 }
 
@@ -3206,8 +3854,9 @@ sub get_fields {
 
 sub csvuploadassign {
     my ($request)= @_;
-    my ($symb,$url)=&get_symb_and_url($request);
+    my ($symb)=&get_symb($request);
     if (!$symb) {return '';}
+    my $error_msg = '';
     &Apache::loncommon::load_tmp_file($request);
     my @gradedata = &Apache::loncommon::upfile_record_sep();
     if ($env{'form.noFirstLine'}) { shift(@gradedata); }
@@ -3260,12 +3909,20 @@ sub csvuploadassign {
 		my $part=$1;
 		my $wgt =&Apache::lonnet::EXT('resource.'.$part.'.weight',
 					      $symb,$domain,$username);
-		$entries{$fields{$dest}}=~s/\s//g;
-		my $pcr=$entries{$fields{$dest}} / $wgt;
-		my $award='correct_by_override';
-		$grades{"resource.$part.awarded"}=$pcr;
-		$grades{"resource.$part.solved"}=$award;
-		$points{$part}=1;
+                if ($wgt) {
+                    $entries{$fields{$dest}}=~s/\s//g;
+                    my $pcr=$entries{$fields{$dest}} / $wgt;
+                    my $award='correct_by_override';
+                    $grades{"resource.$part.awarded"}=$pcr;
+                    $grades{"resource.$part.solved"}=$award;
+                    $points{$part}=1;
+                } else {
+                    $error_msg = "<br />" .
+                        &mt("Some point values were assigned"
+                            ." for problems with a weight "
+                            ."of zero. These values were "
+                            ."ignored.");
+                }
 	    } else {
 		if ($dest=~/stores_(.*)_awarded/) { if ($points{$1}) {next;} }
 		if ($dest=~/stores_(.*)_solved/)  { if ($points{$1}) {next;} }
@@ -3275,27 +3932,36 @@ sub csvuploadassign {
 		$grades{$store_key}=$entries{$fields{$dest}};
 	    }
 	}
-	if (! %grades) { push(@skipped,"$username:$domain no data to store"); }
+	if (! %grades) { push(@skipped,"$username:$domain no data to save"); }
 	$grades{"resource.regrader"}="$env{'user.name'}:$env{'user.domain'}";
-#	&Apache::lonnet::logthis(" storing ".(join('-',%grades)));
-	&Apache::lonnet::cstore(\%grades,$symb,$env{'request.course.id'},
-				$domain,$username);
-	$request->print('.');
+	my $result=&Apache::lonnet::cstore(\%grades,$symb,
+					   $env{'request.course.id'},
+					   $domain,$username);
+	if ($result eq 'ok') {
+	    $request->print('.');
+	} else {
+	    $request->print("<p>
+                              <span class=\"LC_error\">
+                                 Failed to save student $username:$domain.
+                                 Message when trying to save was ($result)
+                              </span>
+                             </p>" );
+	}
 	$request->rflush();
 	$countdone++;
     }
-    $request->print("<br />Stored $countdone students\n");
+    $request->print("<br />Saved $countdone students\n");
     if (@skipped) {
-	$request->print('<p<font size="+1"><b>Skipped Students</b></font></p>');
+	$request->print('<p><h4><b>Skipped Students</b></h4></p>');
 	foreach my $student (@skipped) { $request->print("$student<br />\n"); }
     }
     if (@notallowed) {
-	$request->print('<p><font size="+1" color="red"><b>Students Not Allowed to Modify</b></font></p>');
+	$request->print('<p><span class="LC_error">Students Not Allowed to Modify</span></p>');
 	foreach my $student (@notallowed) { $request->print("$student<br />\n"); }
     }
     $request->print("<br />\n");
-    $request->print(&show_grading_menu_form($symb,$url));
-    return '';
+    $request->print(&show_grading_menu_form($symb));
+    return $error_msg;
 }
 #------------- end of section for handling csv file upload ---------
 #
@@ -3324,17 +3990,17 @@ function checkPickOne(formname) {
 </script>
 LISTJAVASCRIPT
     &commonJSfunctions($request);
-    my ($symb,$url) = &get_symb_and_url($request);
+    my ($symb) = &get_symb($request);
     my $cdom      = $env{"course.$env{'request.course.id'}.domain"};
     my $cnum      = $env{"course.$env{'request.course.id'}.num"};
     my $getsec    = $env{'form.section'} eq '' ? 'all' : $env{'form.section'};
 
-    my $result='<h3><font color="#339933">&nbsp;'.
-	'Manual Grading by Page or Sequence</font></h3>';
+    my $result='<h3><span class="LC_info">&nbsp;'.
+	'Manual Grading by Page or Sequence</span></h3>';
 
     $result.='<form action="/adm/grades" method="post" name="displayPage">'."\n";
     $result.='&nbsp;<b>Problems from:</b> <select name="selectpage">'."\n";
-    my ($titles,$symbx) = &getSymbMap($request);
+    my ($titles,$symbx) = &getSymbMap();
     my ($curpage) =&Apache::lonnet::decode_symb($symb); 
 #    my ($curpage,$mapId) =&Apache::lonnet::decode_symb($symb); 
 #    my $type=($curpage =~ /\.(page|sequence)/);
@@ -3342,11 +4008,11 @@ LISTJAVASCRIPT
     foreach (@$titles) {
 	my ($minder,$showtitle) = ($_ =~ /(\d+)\.(.*)/);
 	$result.='<option value="'.$ctr.'" '.
-	    ($$symbx{$_} =~ /$curpage$/ ? 'selected="on"' : '').
+	    ($$symbx{$_} =~ /$curpage$/ ? 'selected="selected"' : '').
 	    '>'.$showtitle.'</option>'."\n";
 	$ctr++;
     }
-    $result.= '</select>'."<br>\n";
+    $result.= '</select>'."<br />\n";
     $ctr=0;
     foreach (@$titles) {
 	my ($minder,$showtitle) = ($_ =~ /(\d+)\.(.*)/);
@@ -3357,27 +4023,30 @@ LISTJAVASCRIPT
     $result.='<input type="hidden" name="page" />'."\n".
 	'<input type="hidden" name="title" />'."\n";
 
-    $result.='&nbsp;<b>View Problems Text: </b><input type="radio" name="vProb" value="no" checked="on" /> no '."\n".
-	'<input type="radio" name="vProb" value="yes" /> yes '."<br>\n";
+    $result.='&nbsp;<b>View Problems Text: </b><label><input type="radio" name="vProb" value="no" checked="checked" /> no </label>'."\n".
+	'<label><input type="radio" name="vProb" value="yes" /> yes </label>'."<br />\n";
 
     $result.='&nbsp;<b>Submission Details: </b>'.
-	'<input type="radio" name="lastSub" value="none" /> none'."\n".
-	'<input type="radio" name="lastSub" value="datesub" checked /> by dates and submissions'."\n".
-	'<input type="radio" name="lastSub" value="all" /> all details'."\n";
-
-    $result.='<input type="hidden" name="section"     value="'.$getsec.'" />'."\n".
-	'<input type="hidden" name="Status"  value="'.$env{'form.Status'}.'" />'."\n".
+	'<label><input type="radio" name="lastSub" value="none" /> none</label>'."\n".
+	'<label><input type="radio" name="lastSub" value="datesub" checked="checked" /> by dates and submissions</label>'."\n".
+	'<label><input type="radio" name="lastSub" value="all" /> all details</label>'."\n";
+    
+    $result.=&build_section_inputs();
+    my $stu_status = join(':',&Apache::loncommon::get_env_multiple('form.Status'));
+    $result.='<input type="hidden" name="Status"  value="'.$stu_status.'" />'."\n".
 	'<input type="hidden" name="command" value="displayPage" />'."\n".
-	'<input type="hidden" name="url"     value="'.$url.'" />'."\n".
-	'<input type="hidden" name="symb"    value="'.$symb.'" />'."\n".
+	'<input type="hidden" name="symb"    value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n".
 	'<input type="hidden" name="saveState" value="'.$env{'form.saveState'}.'" />'."<br />\n";
 
+    $result.='&nbsp;<b>'.&mt('Use CODE:').' </b>'.
+	'<input type="text" name="CODE" value="" /><br />'."\n";
+
     $result.='&nbsp;<input type="button" '.
 	'onClick="javascript:checkPickOne(this.form);"value="Next->" /><br />'."\n";
 
     $request->print($result);
 
-    my $studentTable.='&nbsp;<b>Select a student you wish to grade and then click on the Next button.</b><br>'.
+    my $studentTable.='&nbsp;<b>Select a student you wish to grade and then click on the Next button.</b><br />'.
 	'<table border="0"><tr><td bgcolor="#777777">'.
 	'<table border="0"><tr bgcolor="#e6ffff">'.
 	'<td align="right">&nbsp;<b>No.</b></td>'.
@@ -3387,28 +4056,33 @@ LISTJAVASCRIPT
  
     my (undef,undef,$fullname) = &getclasslist($getsec,'1');
     my $ptr = 1;
-    foreach my $student (sort {lc($$fullname{$a}) cmp lc($$fullname{$b}) } keys %$fullname) {
+    foreach my $student (sort 
+			 {
+			     if (lc($$fullname{$a}) ne lc($$fullname{$b})) {
+				 return (lc($$fullname{$a}) cmp lc($$fullname{$b}));
+			     }
+			     return $a cmp $b;
+			 } (keys(%$fullname))) {
 	my ($uname,$udom) = split(/:/,$student);
 	$studentTable.=($ptr%2 == 1 ? '<tr bgcolor="#ffffe6">' : '</td>');
 	$studentTable.='<td align="right">'.$ptr.'&nbsp;</td>';
-	$studentTable.='<td>&nbsp;<input type="radio" name="student" value="'.$student.'" /> '
-	    .&nameUserString(undef,$$fullname{$student},$uname,$udom)."\n";
+	$studentTable.='<td>&nbsp;<label><input type="radio" name="student" value="'.$student.'" /> '
+	    .&nameUserString(undef,$$fullname{$student},$uname,$udom)."</label>\n";
 	$studentTable.=($ptr%2 == 0 ? '</td></tr>' : '');
 	$ptr++;
     }
-    $studentTable.='</td><td>&nbsp;</td><td>&nbsp;' if ($ptr%2 == 0);
-    $studentTable.='</td></tr></table></td></tr></table>'."\n";
+    $studentTable.='</td><td>&nbsp;</td><td>&nbsp;</td></tr>' if ($ptr%2 == 0);
+    $studentTable.='</table></td></tr></table>'."\n";
     $studentTable.='<input type="button" '.
 	'onClick="javascript:checkPickOne(this.form);"value="Next->" /></form>'."\n";
 
-    $studentTable.=&show_grading_menu_form($symb,$url);
+    $studentTable.=&show_grading_menu_form($symb);
     $request->print($studentTable);
 
     return '';
 }
 
 sub getSymbMap {
-    my ($request) = @_;
     my $navmap = Apache::lonnavmaps::navmap->new();
 
     my %symbx = ();
@@ -3420,9 +4094,10 @@ sub getSymbMap {
 					       1,0,1);
     for my $sequence ($navmap->getById('0.0'), @sequences) {
 	if ($navmap->hasResource($sequence, sub { shift->is_problem(); }, 0) ) {
-	    my $title = $minder.'.'.$sequence->compTitle();
-	    push @titles, $title; # minder in case two titles are identical
-	    $symbx{$title} = $sequence->symb();
+	    my $title = $minder.'.'.
+		&HTML::Entities::encode($sequence->compTitle(),'"\'&');
+	    push(@titles, $title); # minder in case two titles are identical
+	    $symbx{$title} = &HTML::Entities::encode($sequence->symb(),'"\'&');
 	    $minder++;
 	}
     }
@@ -3434,7 +4109,7 @@ sub getSymbMap {
 sub displayPage {
     my ($request) = shift;
 
-    my ($symb,$url) = &get_symb_and_url($request);
+    my ($symb) = &get_symb($request);
     my $cdom      = $env{"course.$env{'request.course.id'}.domain"};
     my $cnum      = $env{"course.$env{'request.course.id'}.num"};
     my $getsec    = $env{'form.section'} eq '' ? 'all' : $env{'form.section'};
@@ -3451,20 +4126,29 @@ sub displayPage {
     &Apache::lonnet::clear_EXT_cache_status();
 
     if (!&canview($usec)) {
-	$request->print('<font color="red">Unable to view requested student.('.$env{'form.student'}.')</font>');
-	$request->print(&show_grading_menu_form($symb,$url));
+	$request->print('<span class="LC_warning">Unable to view requested student.('.$env{'form.student'}.')</span>');
+	$request->print(&show_grading_menu_form($symb));
 	return;
     }
-    my $result='<h3><font color="#339933">&nbsp;'.$env{'form.title'}.'</font></h3>';
+    my $result='<h3><span class="LC_info">&nbsp;'.$env{'form.title'}.'</span></h3>';
     $result.='<h3>&nbsp;Student: '.&nameUserString(undef,$$fullname{$env{'form.student'}},$uname,$udom).
 	'</h3>'."\n";
+    if (&Apache::lonnet::validCODE($env{'form.CODE'})) {
+	$result.='<h3>&nbsp;CODE: '.$env{'form.CODE'}.'</h3>'."\n";
+    } else {
+	delete($env{'form.CODE'});
+    }
     &sub_page_js($request);
     $request->print($result);
 
     my $navmap = Apache::lonnavmaps::navmap->new();
     my ($mapUrl, $id, $resUrl)=&Apache::lonnet::decode_symb($env{'form.page'});
     my $map = $navmap->getResourceByUrl($resUrl); # add to navmaps
-
+    if (!$map) {
+	$request->print('<span class="LC_warning">Unable to view requested sequence. ('.$resUrl.')</span>');
+	$request->print(&show_grading_menu_form($symb));
+	return; 
+    }
     my $iterator = $navmap->getIterator($map->map_start(),
 					$map->map_finish());
 
@@ -3474,12 +4158,16 @@ sub displayPage {
 	'<input type="hidden" name="student" value="'.$env{'form.student'}.'" />'."\n".
 	'<input type="hidden" name="page"    value="'.$pageTitle.'" />'."\n".
 	'<input type="hidden" name="title"   value="'.$env{'form.title'}.'" />'."\n".
-	'<input type="hidden" name="url"     value="'.$url.'" />'."\n".
-	'<input type="hidden" name="symb"    value="'.$symb.'" />'."\n".
+	'<input type="hidden" name="symb"    value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n".
 	'<input type="hidden" name="overRideScore" value="no" />'."\n".
 	'<input type="hidden" name="saveState" value="'.$env{'form.saveState'}.'" />'."\n";
 
-    my $checkIcon = '<img src="'.$request->dir_config('lonIconsURL').
+    if (defined($env{'form.CODE'})) {
+	$studentTable.=
+	    '<input type="hidden" name="CODE" value="'.$env{'form.CODE'}.'" />'."\n";
+    }
+    my $checkIcon = '<img alt="'.&mt('Check Mark').
+	'" src="'.$request->dir_config('lonIconsURL').
 	'/check.gif" height="16" border="0" />';
 
     $studentTable.='&nbsp;<b>Note:</b> Problems graded correct by the computer are marked with a '.$checkIcon.
@@ -3489,6 +4177,7 @@ sub displayPage {
 	'<td align="center"><b>&nbsp;Prob.&nbsp;</b></td>'.
 	'<td><b>&nbsp;'.($env{'form.vProb'} eq 'no' ? 'Title' : 'Problem Text').'/Grade</b></td></tr>';
 
+    &Apache::lonxml::clear_problem_counter();
     my ($depth,$question,$prob) = (1,1,1);
     $iterator->next(); # skip the first BEGIN_MAP
     my $curRes = $iterator->next(); # for "current resource"
@@ -3496,33 +4185,34 @@ sub displayPage {
         if($curRes == $iterator->BEGIN_MAP) { $depth++; }
         if($curRes == $iterator->END_MAP) { $depth--; }
 
-        if (ref($curRes) && $curRes->is_problem() && !$curRes->randomout) {
+        if (ref($curRes) && $curRes->is_problem()) {
 	    my $parts = $curRes->parts();
             my $title = $curRes->compTitle();
 	    my $symbx = $curRes->symb();
 	    $studentTable.='<tr bgcolor="#ffffe6"><td align="center" valign="top" >'.$prob.
-		(scalar(@{$parts}) == 1 ? '' : '<br>('.scalar(@{$parts}).'&nbsp;parts)').'</td>';
+		(scalar(@{$parts}) == 1 ? '' : '<br />('.scalar(@{$parts}).'&nbsp;parts)').'</td>';
 	    $studentTable.='<td valign="top">';
+	    my %form = ('CODE' => $env{'form.CODE'},);
 	    if ($env{'form.vProb'} eq 'yes' ) {
 		$studentTable.=&show_problem($request,$symbx,$uname,$udom,1,
-					     undef,'both');
+					     undef,'both',\%form);
 	    } else {
-		my $companswer = &Apache::loncommon::get_student_answers($symbx,$uname,$udom,$env{'request.course.id'});
+		my $companswer = &Apache::loncommon::get_student_answers($symbx,$uname,$udom,$env{'request.course.id'},%form);
 		$companswer =~ s|<form(.*?)>||g;
 		$companswer =~ s|</form>||g;
 #		while ($companswer =~ /(<a href\=\"javascript:newWindow.*?Script Vars<\/a>)/s) { #<a href="javascript:newWindow</a>
 #		    $companswer =~ s/$1/ /ms;
-#		    $request->print('match='.$1."<br>\n");
+#		    $request->print('match='.$1."<br />\n");
 #		}
 #		$companswer =~ s|<table border=\"1\">|<table border=\"0\">|g;
-		$studentTable.='&nbsp;<b>'.$title.'</b>&nbsp;<br>&nbsp;<b>Correct answer:</b><br>'.$companswer;
+		$studentTable.='&nbsp;<b>'.$title.'</b>&nbsp;<br />&nbsp;<b>Correct answer:</b><br />'.$companswer;
 	    }
 
 	    my %record = &Apache::lonnet::restore($symbx,$env{'request.course.id'},$udom,$uname);
 
 	    if ($env{'form.lastSub'} eq 'datesub') {
 		if ($record{'version'} eq '') {
-		    $studentTable.='<br />&nbsp;<font color="red">No recorded submission for this problem</font><br />';
+		    $studentTable.='<br />&nbsp;<span class="LC_warning">No recorded submission for this problem</span><br />';
 		} else {
 		    my %responseType = ();
 		    foreach my $partid (@{$parts}) {
@@ -3558,11 +4248,11 @@ sub displayPage {
         $curRes = $iterator->next();
     }
 
-    $studentTable.='</td></tr></table></td></tr></table>'."\n".
+    $studentTable.='</table></td></tr></table>'."\n".
 	'<input type="button" value="Save" '.
-	'onClick="javascript:checkSubmitPage(this.form,'.$question.');" TARGET=_self />'.
+	'onClick="javascript:checkSubmitPage(this.form,'.$question.');" />'.
 	'</form>'."\n";
-    $studentTable.=&show_grading_menu_form($symb,$url);
+    $studentTable.=&show_grading_menu_form($symb);
     $request->print($studentTable);
 
     return '';
@@ -3571,6 +4261,7 @@ sub displayPage {
 sub displaySubByDates {
     my ($symb,$record,$parts,$responseType,$checkIcon,$uname,$udom) = @_;
     my $isCODE=0;
+    my $isTask = ($symb =~/\.task$/);
     if (exists($record->{'resource.CODE'})) { $isCODE=1; }
     my $studentTable='<table border="0" width="100%"><tr><td bgcolor="#777777">'.
 	'<table border="0" width="100%"><tr bgcolor="#e6ffff">'.
@@ -3583,10 +4274,18 @@ sub displaySubByDates {
     my %orders;
     $mark{'correct_by_student'} = $checkIcon;
     if (!exists($$record{'1:timestamp'})) {
-	return '<br />&nbsp;<font color="red">Nothing submitted - no attempts</font><br />';
+	return '<br />&nbsp;<span class="LC_warning">Nothing submitted - no attempts</span><br />';
     }
+
+    my $interaction;
     for ($version=1;$version<=$$record{'version'};$version++) {
 	my $timestamp = scalar(localtime($$record{$version.':timestamp'}));
+	if (exists($$record{$version.':resource.0.version'})) {
+	    $interaction = $$record{$version.':resource.0.version'};
+	}
+
+	my $where = ($isTask ? "$version:resource.$interaction"
+		             : "$version:resource");
 	$studentTable.='<tr bgcolor="#ffffff" valign="top"><td>'.$timestamp.'</td>';
 	if ($isCODE) {
 	    $studentTable.='<td>'.$record->{$version.':resource.CODE'}.'</td>';
@@ -3594,40 +4293,56 @@ sub displaySubByDates {
 	my @versionKeys = split(/\:/,$$record{$version.':keys'});
 	my @displaySub = ();
 	foreach my $partid (@{$parts}) {
-	    my @matchKey = sort(grep /^resource\.\Q$partid\E\..*?\.submission$/,@versionKeys);
+	    my @matchKey = ($isTask ? sort(grep /^resource\.\d+\.\Q$partid\E\.award$/,@versionKeys)
+			            : sort(grep /^resource\.\Q$partid\E\..*?\.submission$/,@versionKeys));
+	    
+
 #	    next if ($$record{"$version:resource.$partid.solved"} eq '');
-	    my $display_part=&get_display_part($partid,undef,$symb);
+	    my $display_part=&get_display_part($partid,$symb);
 	    foreach my $matchKey (@matchKey) {
 		if (exists($$record{$version.':'.$matchKey}) &&
 		    $$record{$version.':'.$matchKey} ne '') {
-		    my ($responseId)=($matchKey=~ /^resource\.\Q$partid\E\.(.*?)\.submission$/);
+
+		    my ($responseId)= ($isTask ? ($matchKey=~ /^resource\.(.*?)\.\Q$partid\E\.award$/)
+				               : ($matchKey=~ /^resource\.\Q$partid\E\.(.*?)\.submission$/));
 		    $displaySub[0].='<b>Part:</b>&nbsp;'.$display_part.'&nbsp;';
-		    $displaySub[0].='<font color="#999999">(ID&nbsp;'.
-			$responseId.')</font>&nbsp;<b>';
-		    if ($$record{"$version:resource.$partid.tries"} eq '') {
+		    $displaySub[0].='<span class="LC_internal_info">(ID&nbsp;'.
+			$responseId.')</span>&nbsp;<b>';
+		    if ($$record{"$where.$partid.tries"} eq '') {
 			$displaySub[0].='Trial&nbsp;not&nbsp;counted';
 		    } else {
 			$displaySub[0].='Trial&nbsp;'.
-			    $$record{"$version:resource.$partid.tries"};
+			    $$record{"$where.$partid.tries"};
 		    }
-		    my $responseType=$responseType->{$partid}->{$responseId};
+		    my $responseType=($isTask ? 'Task'
+                                              : $responseType->{$partid}->{$responseId});
 		    if (!exists($orders{$partid})) { $orders{$partid}={}; }
 		    if (!exists($orders{$partid}->{$responseId})) {
 			$orders{$partid}->{$responseId}=
 			    &get_order($partid,$responseId,$symb,$uname,$udom);
 		    }
 		    $displaySub[0].='</b>&nbsp; '.
-			&cleanRecord($$record{$version.':'.$matchKey},$responseType,$symb,$partid,$responseId,$record,$orders{$partid}->{$responseId},"$version:").'<br />';
+			&cleanRecord($$record{$version.':'.$matchKey},$responseType,$symb,$partid,$responseId,$record,$orders{$partid}->{$responseId},"$version:",$uname,$udom).'<br />';
 		}
 	    }
-	    if (exists $$record{"$version:resource.$partid.award"}) {
+	    if (exists($$record{"$where.$partid.checkedin"})) {
+		$displaySub[1].='Checked in by '.
+		    $$record{"$where.$partid.checkedin"}.' into slot '.
+		    $$record{"$where.$partid.checkedin.slot"}.
+		    '<br />';
+	    }
+	    if (exists $$record{"$where.$partid.award"}) {
 		$displaySub[1].='<b>Part:</b>&nbsp;'.$display_part.' &nbsp;'.
-		    lc($$record{"$version:resource.$partid.award"}).' '.
-		    $mark{$$record{"$version:resource.$partid.solved"}}.
+		    lc($$record{"$where.$partid.award"}).' '.
+		    $mark{$$record{"$where.$partid.solved"}}.
 		    '<br />';
 	    }
-	    if (exists $$record{"$version:resource.$partid.regrader"}) {
-		$displaySub[2].=$$record{"$version:resource.$partid.regrader"}.
+	    if (exists $$record{"$where.$partid.regrader"}) {
+		$displaySub[2].=$$record{"$where.$partid.regrader"}.
+		    ' (<b>'.&mt('Part').':</b> '.$display_part.')';
+	    } elsif ($$record{"$version:resource.$partid.regrader"} =~ /\S/) {
+		$displaySub[2].=
+		    $$record{"$version:resource.$partid.regrader"}.
 		    ' (<b>'.&mt('Part').':</b> '.$display_part.')';
 	    }
 	}
@@ -3657,11 +4372,11 @@ sub updateGradeByPage {
     my ($uname,$udom) = split(/:/,$env{'form.student'});
     my $usec=$classlist->{$env{'form.student'}}[5];
     if (!&canmodify($usec)) {
-	$request->print('<font color="red">Unable to modify requested student.('.$env{'form.student'}.'</font>');
-	$request->print(&show_grading_menu_form($env{'form.symb'},$env{'form.url'}));
+	$request->print('<span class="LC_warning">Unable to modify requested student.('.$env{'form.student'}.'</span>');
+	$request->print(&show_grading_menu_form($env{'form.symb'}));
 	return;
     }
-    my $result='<h3><font color="#339933">&nbsp;'.$env{'form.title'}.'</font></h3>';
+    my $result='<h3><span class="LC_info">&nbsp;'.$env{'form.title'}.'</span></h3>';
     $result.='<h3>&nbsp;Student: '.&nameUserString(undef,$env{'form.fullname'},$uname,$udom).
 	'</h3>'."\n";
 
@@ -3670,7 +4385,12 @@ sub updateGradeByPage {
     my $navmap = Apache::lonnavmaps::navmap->new();
     my ($mapUrl, $id, $resUrl) = &Apache::lonnet::decode_symb( $env{'form.page'});
     my $map = $navmap->getResourceByUrl($resUrl); # add to navmaps
-
+    if (!$map) {
+	$request->print('<span class="LC_warning">Unable to grade requested sequence. ('.$resUrl.')</span>');
+	my ($symb)=&get_symb($request);
+	$request->print(&show_grading_menu_form($symb));
+	return; 
+    }
     my $iterator = $navmap->getIterator($map->map_start(),
 					$map->map_finish());
 
@@ -3688,12 +4408,12 @@ sub updateGradeByPage {
         if($curRes == $iterator->BEGIN_MAP) { $depth++; }
         if($curRes == $iterator->END_MAP) { $depth--; }
 
-        if (ref($curRes) && $curRes->is_problem() && !$curRes->randomout) {
+        if (ref($curRes) && $curRes->is_problem()) {
 	    my $parts = $curRes->parts();
             my $title = $curRes->compTitle();
 	    my $symbx = $curRes->symb();
 	    $studentTable.='<tr bgcolor="#ffffe6"><td align="center" valign="top" >'.$prob.
-		(scalar(@{$parts}) == 1 ? '' : '<br>('.scalar(@{$parts}).'&nbsp;parts)').'</td>';
+		(scalar(@{$parts}) == 1 ? '' : '<br />('.scalar(@{$parts}).'&nbsp;parts)').'</td>';
 	    $studentTable.='<td valign="top">&nbsp;<b>'.$title.'</b>&nbsp;</td>';
 
 	    my %newrecord=();
@@ -3735,18 +4455,16 @@ sub updateGradeByPage {
                         $aggregateflag = 1;
                     }
 		}
-		my $display_part=&get_display_part($partid,undef,
-						   $curRes->symb());
+		my $display_part=&get_display_part($partid,$curRes->symb());
 		my $oldstatus = $env{'form.solved'.$question.'_'.$partid};
 		$displayPts[0].='&nbsp;<b>Part:</b> '.$display_part.' = '.
 		    (($oldstatus eq 'excused') ? 'excused' : $oldpts).
-		    '&nbsp;<br>';
+		    '&nbsp;<br />';
 		$displayPts[1].='&nbsp;<b>Part:</b> '.$display_part.' = '.
 		     (($score eq 'excused') ? 'excused' : $newpts).
-		    '&nbsp;<br>';
-
+		    '&nbsp;<br />';
 		$question++;
-		next if ($dropMenu eq 'reset status' || ($newpts == $oldpts && $score ne 'excused'));
+		next if ($dropMenu eq 'reset status' || ($newpts eq $oldpts && $score ne 'excused'));
 
 		$newrecord{'resource.'.$partid.'.awarded'}  = $partial if $partial ne '';
 		$newrecord{'resource.'.$partid.'.solved'}   = $score if $score ne '';
@@ -3756,9 +4474,24 @@ sub updateGradeByPage {
 		$changeflag++;
 	    }
 	    if (scalar(keys(%newrecord)) > 0) {
+		my %record = 
+		    &Apache::lonnet::restore($symbx,$env{'request.course.id'},
+					     $udom,$uname);
+
+		if (&Apache::lonnet::validCODE($env{'form.CODE'})) {
+		    $newrecord{'resource.CODE'} = $env{'form.CODE'};
+		} elsif (&Apache::lonnet::validCODE($record{'resource.CODE'})) {
+		    $newrecord{'resource.CODE'} = '';
+		}
 		&Apache::lonnet::cstore(\%newrecord,$symbx,$env{'request.course.id'},
 					$udom,$uname);
+		%record = &Apache::lonnet::restore($symbx,
+						   $env{'request.course.id'},
+						   $udom,$uname);
+		&check_and_remove_from_queue($parts,\%record,undef,$symbx,
+					     $cdom,$cnum,$udom,$uname);
 	    }
+	    
             if ($aggregateflag) {
                 &Apache::lonnet::cinc('nohist_resourcetracker',\%aggregate,
                       $env{'course.'.$env{'request.course.id'}.'.domain'},
@@ -3775,7 +4508,7 @@ sub updateGradeByPage {
     }
 
     $studentTable.='</td></tr></table></td></tr></table>';
-    $studentTable.=&show_grading_menu_form($env{'form.symb'},$env{'form.url'});
+    $studentTable.=&show_grading_menu_form($env{'form.symb'});
     my $grademsg=($changeflag == 0 ? 'No score was changed or updated.' :
 		  'The scores were changed for '.
 		  $changeflag.' problem'.($changeflag == 1 ? '.' : 's.'));
@@ -3792,25 +4525,94 @@ sub updateGradeByPage {
 #
 #------ start of section for handling grading by page/sequence ---------
 
+=pod
+
+=head1 Bubble sheet grading routines
+
+  For this documentation:
+
+   'scanline' refers to the full line of characters
+   from the file that we are parsing that represents one entire sheet
+
+   'bubble line' refers to the data
+   representing the line of bubbles that are on the physical bubble sheet
+
+
+The overall process is that a scanned in bubble sheet data is uploaded
+into a course. When a user wants to grade, they select a
+sequence/folder of resources, a file of bubble sheet info, and pick
+one of the predefined configurations for what each scanline looks
+like.
+
+Next each scanline is checked for any errors of either 'missing
+bubbles' (it's an error because it may have been mis-scanned
+because too light bubbling), 'double bubble' (each bubble line should
+have no more that one letter picked), invalid or duplicated CODE,
+invalid student ID
+
+If the CODE option is used that determines the randomization of the
+homework problems, either way the student ID is looked up into a
+username:domain.
+
+During the validation phase the instructor can choose to skip scanlines. 
+
+After the validation phase, there are now 3 bubble sheet files
+
+  scantron_original_filename (unmodified original file)
+  scantron_corrected_filename (file where the corrected information has replaced the original information)
+  scantron_skipped_filename (contains the exact text of scanlines that where skipped)
+
+Also there is a separate hash nohist_scantrondata that contains extra
+correction information that isn't representable in the bubble sheet
+file (see &scantron_getfile() for more information)
+
+After all scanlines are either valid, marked as valid or skipped, then
+foreach line foreach problem in the picked sequence, an ssi request is
+made that simulates a user submitting their selected letter(s) against
+the homework problem.
+
+=over 4
+
+
+
+=item defaultFormData
+
+  Returns html hidden inputs used to hold context/default values.
+
+ Arguments:
+  $symb - $symb of the current resource 
+
+=cut
+
 sub defaultFormData {
-    my ($symb,$url)=@_;
-    return '
-      <input type="hidden" name="symb"    value="'.$symb.'" />'."\n".
-     '<input type="hidden" name="url"     value="'.$url.'" />'."\n".
+    my ($symb)=@_;
+    return '<input type="hidden" name="symb"    value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n".
      '<input type="hidden" name="saveState" value="'.$env{'form.saveState'}.'" />'."\n".
      '<input type="hidden" name="probTitle" value="'.$env{'form.probTitle'}.'" />'."\n";
 }
 
+
+=pod 
+
+=item getSequenceDropDown
+
+   Return html dropdown of possible sequences to grade
+ 
+ Arguments:
+   $symb - $symb of the current resource 
+
+=cut
+
 sub getSequenceDropDown {
-    my ($request,$symb)=@_;
+    my ($symb)=@_;
     my $result='<select name="selectpage">'."\n";
-    my ($titles,$symbx) = &getSymbMap($request);
+    my ($titles,$symbx) = &getSymbMap();
     my ($curpage)=&Apache::lonnet::decode_symb($symb); 
     my $ctr=0;
     foreach (@$titles) {
 	my ($minder,$showtitle) = ($_ =~ /(\d+)\.(.*)/);
 	$result.='<option value="'.$$symbx{$_}.'" '.
-	    ($$symbx{$_} =~ /$curpage$/ ? 'selected="on"' : '').
+	    ($$symbx{$_} =~ /$curpage$/ ? 'selected="selected"' : '').
 	    '>'.$showtitle.'</option>'."\n";
 	$ctr++;
     }
@@ -3818,11 +4620,20 @@ sub getSequenceDropDown {
     return $result;
 }
 
+
+=pod 
+
+=item scantron_filenames
+
+   Returns a list of the scantron files in the current course 
+
+=cut
+
 sub scantron_filenames {
     my $cdom=$env{'course.'.$env{'request.course.id'}.'.domain'};
     my $cname=$env{'course.'.$env{'request.course.id'}.'.num'};
     my @files=&Apache::lonnet::dirlist('userfiles',$cdom,$cname,
-				    &Apache::loncommon::propath($cdom,$cname));
+				    &propath($cdom,$cname));
     my @possiblenames;
     foreach my $filename (sort(@files)) {
 	($filename)=split(/&/,$filename);
@@ -3833,17 +4644,37 @@ sub scantron_filenames {
     return @possiblenames;
 }
 
+=pod 
+
+=item scantron_uploads
+
+   Returns  html drop-down list of scantron files in current course.
+
+ Arguments:
+   $file2grade - filename to set as selected in the dropdown
+
+=cut
+
 sub scantron_uploads {
     my ($file2grade) = @_;
     my $result=	'<select name="scantron_selectfile">';
     $result.="<option></option>";
     foreach my $filename (sort(&scantron_filenames())) {
-	$result.="<option".($filename eq $file2grade ? ' selected="on"':'').">$filename</option>\n";
+	$result.="<option".($filename eq $file2grade ? ' selected="selected"':'').">$filename</option>\n";
     }
     $result.="</select>";
     return $result;
 }
 
+=pod 
+
+=item scantron_scantab
+
+  Returns html drop down of the scantron formats in the scantronformat.tab
+  file.
+
+=cut
+
 sub scantron_scantab {
     my $fh=Apache::File->new($Apache::lonnet::perlvar{'lonTabDir'}.'/scantronformat.tab');
     my $result='<select name="scantron_format">'."\n";
@@ -3858,6 +4689,15 @@ sub scantron_scantab {
     return $result;
 }
 
+=pod 
+
+=item scantron_CODElist
+
+  Returns html drop down of the saved CODE lists from current course,
+  generated from earlier printings.
+
+=cut
+
 sub scantron_CODElist {
     my $cdom = $env{'course.'.$env{'request.course.id'}.'.domain'};
     my $cnum = $env{'course.'.$env{'request.course.id'}.'.num'};
@@ -3872,32 +4712,58 @@ sub scantron_CODElist {
     return $namechoice;
 }
 
+=pod 
+
+=item scantron_CODEunique
+
+  Returns the html for "Each CODE to be used once" radio.
+
+=cut
+
 sub scantron_CODEunique {
-    my $result='<nobr>
+    my $result='<span style="white-space: nowrap;">
                  <label><input type="radio" name="scantron_CODEunique"
-                        value="Yes" checked="on" /> Yes </label>
-                </nobr>
-                <nobr>
+                        value="yes" checked="checked" />'.&mt('Yes').' </label>
+                </span>
+                <span style="white-space: nowrap;">
                  <label><input type="radio" name="scantron_CODEunique"
-                        value="No" /> No </label>
-                </nobr>';
+                        value="no" />'.&mt('No').' </label>
+                </span>';
     return $result;
 }
 
+=pod 
+
+=item scantron_selectphase
+
+  Generates the initial screen to start the bubble sheet process.
+  Allows for - starting a grading run.
+             - downloading existing scan data (original, corrected
+                                                or skipped info)
+
+             - uploading new scan data
+
+ Arguments:
+  $r          - The Apache request object
+  $file2grade - name of the file that contain the scanned data to score
+
+=cut
+
 sub scantron_selectphase {
     my ($r,$file2grade) = @_;
-    my ($symb,$url)=&get_symb_and_url($r);
+    my ($symb)=&get_symb($r);
     if (!$symb) {return '';}
-    my $sequence_selector=&getSequenceDropDown($r,$symb);
-    my $default_form_data=&defaultFormData($symb,$url);
-    my $grading_menu_button=&show_grading_menu_form($symb,$url);
+    my $sequence_selector=&getSequenceDropDown($symb);
+    my $default_form_data=&defaultFormData($symb);
+    my $grading_menu_button=&show_grading_menu_form($symb);
     my $file_selector=&scantron_uploads($file2grade);
     my $format_selector=&scantron_scantab();
     my $CODE_selector=&scantron_CODElist();
     my $CODE_unique=&scantron_CODEunique();
     my $result;
-    #FIXME allow instructor to be able to download the scantron file
-    # and to upload it,
+
+    # Chunk of form to prompt for a file to grade and how:
+
     $result.= <<SCANTRONFORM;
     <table width="100%" border="0">
     <tr>
@@ -3930,7 +4796,8 @@ sub scantron_selectphase {
 	    <td> Options: </td>
             <td>
 	       <label><input type="checkbox" name="scantron_options_redo" value="redo_skipped"/> Do only previously skipped records</label> <br />
-               <label><input type="checkbox" name="scantron_options_ignore" value="ignore_corrections"/> Remove all exisiting corrections</label>
+               <label><input type="checkbox" name="scantron_options_ignore" value="ignore_corrections"/> Remove all existing corrections</label> <br />
+               <label><input type="checkbox" name="scantron_options_hidden" value="ignore_hidden"/> Skip hidden resources when grading</label>
 	    </td>
           </tr>
           <tr bgcolor="#ffffe6">
@@ -3949,6 +4816,8 @@ SCANTRONFORM
     if (&Apache::lonnet::allowed('usc',$env{'request.role.domain'}) ||
         &Apache::lonnet::allowed('usc',$env{'request.course.id'})) {
 
+	# Chunk of form to prompt for a scantron file upload.
+
         $r->print(<<SCANTRONFORM);
     <tr>
       <td bgcolor="#777777">
@@ -3961,7 +4830,7 @@ SCANTRONFORM
           <tr bgcolor="#ffffe6">
             <td>
 SCANTRONFORM
-    my $default_form_data=&defaultFormData(&get_symb_and_url($r,1));
+    my $default_form_data=&defaultFormData(&get_symb($r,1));
     my $cdom= $env{'course.'.$env{'request.course.id'}.'.domain'};
     my $cnum= $env{'course.'.$env{'request.course.id'}.'.num'};
     $r->print(<<UPLOAD);
@@ -3994,10 +4863,15 @@ UPLOAD
     </tr>
 SCANTRONFORM
     }
+
+    # Chunk of the form that prompts to view a scoring office file,
+    # corrected file, skipped records in a file.
+
     $r->print(<<SCANTRONFORM);
     <tr>
       <form action='/adm/grades' name='scantron_download'>
         <td bgcolor="#777777">
+	  $default_form_data
           <input type="hidden" name="command" value="scantron_download" />
           <table width="100%" border="0">
             <tr bgcolor="#e6ffff">
@@ -4010,7 +4884,7 @@ SCANTRONFORM
             </tr>
             <tr bgcolor="#ffffe6">
               <td colspan="2">
-                <input type="submit" value="Show List of Files" />
+                <input type="submit" value="Download: Show List of Associated Files" />
               </td>
             </tr>
           </table>
@@ -4027,6 +4901,63 @@ SCANTRONFORM
     return
 }
 
+=pod
+
+=item get_scantron_config
+
+   Parse and return the scantron configuration line selected as a
+   hash of configuration file fields.
+
+ Arguments:
+    which - the name of the configuration to parse from the file.
+
+
+ Returns:
+            If the named configuration is not in the file, an empty
+            hash is returned.
+    a hash with the fields
+      name         - internal name for the this configuration setup
+      description  - text to display to operator that describes this config
+      CODElocation - if 0 or the string 'none'
+                          - no CODE exists for this config
+                     if -1 || the string 'letter'
+                          - a CODE exists for this config and is
+                            a string of letters
+                     Unsupported value (but planned for future support)
+                          if a positive integer
+                               - The CODE exists as the first n items from
+                                 the question section of the form
+                          if the string 'number'
+                               - The CODE exists for this config and is
+                                 a string of numbers
+      CODEstart   - (only matter if a CODE exists) column in the line where
+                     the CODE starts
+      CODElength  - length of the CODE
+      IDstart     - column where the student ID number starts
+      IDlength    - length of the student ID info
+      Qstart      - column where the information from the bubbled
+                    'questions' start
+      Qlength     - number of columns comprising a single bubble line from
+                    the sheet. (usually either 1 or 10)
+      Qon         - either a single character representing the character used
+                    to signal a bubble was chosen in the positional setup, or
+                    the string 'letter' if the letter of the chosen bubble is
+                    in the final, or 'number' if a number representing the
+                    chosen bubble is in the file (1->A 0->J)
+      Qoff        - the character used to represent that a bubble was
+                    left blank
+      PaperID     - if the scanning process generates a unique number for each
+                    sheet scanned the column that this ID number starts in
+      PaperIDlength - number of columns that comprise the unique ID number
+                      for the sheet of paper
+      FirstName   - column that the first name starts in
+      FirstNameLength - number of columns that the first name spans
+ 
+      LastName    - column that the last name starts in
+      LastNameLength - number of columns that the last name spans
+
+=cut
+
 sub get_scantron_config {
     my ($which) = @_;
     my $fh=Apache::File->new($Apache::lonnet::perlvar{'lonTabDir'}.'/scantronformat.tab');
@@ -4059,6 +4990,25 @@ sub get_scantron_config {
     return %config;
 }
 
+=pod 
+
+=item username_to_idmap
+
+    creates a hash keyed by student id with values of the corresponding
+    student username:domain.
+
+  Arguments:
+
+    $classlist - reference to the class list hash. This is a hash
+                 keyed by student name:domain  whose elements are references
+                 to arrays containing various chunks of information
+                 about the student. (See loncoursedata for more info).
+
+  Returns
+    %idmap - the constructed hash
+
+=cut
+
 sub username_to_idmap {
     my ($classlist)= @_;
     my %idmap;
@@ -4069,8 +5019,50 @@ sub username_to_idmap {
     return %idmap;
 }
 
+=pod
+
+=item scantron_fixup_scanline
+
+   Process a requested correction to a scanline.
+
+  Arguments:
+    $scantron_config   - hash from &get_scantron_config()
+    $scan_data         - hash of correction information 
+                          (see &scantron_getfile())
+    $line              - existing scanline
+    $whichline         - line number of the passed in scanline
+    $field             - type of change to process 
+                         (either 
+                          'ID'     -> correct the student ID number
+                          'CODE'   -> correct the CODE
+                          'answer' -> fixup the submitted answers)
+    
+   $args               - hash of additional info,
+                          - 'ID' 
+                               'newid' -> studentID to use in replacement
+                                          of existing one
+                          - 'CODE' 
+                               'CODE_ignore_dup' - set to true if duplicates
+                                                   should be ignored.
+	                       'CODE' - is new code or 'use_unfound'
+                                        if the existing unfound code should
+                                        be used as is
+                          - 'answer'
+                               'response' - new answer or 'none' if blank
+                               'question' - the bubble line to change
+
+  Returns:
+    $line - the modified scanline
+
+  Side effects: 
+    $scan_data - may be updated
+
+=cut
+
+
 sub scantron_fixup_scanline {
     my ($scantron_config,$scan_data,$line,$whichline,$field,$args)=@_;
+
     if ($field eq 'ID') {
 	if (length($args->{'newid'}) > $$scantron_config{'IDlength'}) {
 	    return ($line,1,'New value too large');
@@ -4114,6 +5106,7 @@ sub scantron_fixup_scanline {
 		$answer=$alphabet[$args->{'response'}];
 	    } elsif ($on eq 'number') {
 		$answer=$args->{'response'}+1;
+		if ($answer == 10) { $answer = '0'; }
 	    } else {
 		substr($answer,$args->{'response'},1)=$on;
 	    }
@@ -4126,6 +5119,25 @@ sub scantron_fixup_scanline {
     return $line;
 }
 
+=pod
+
+=item scan_data
+
+    Edit or look up  an item in the scan_data hash.
+
+  Arguments:
+    $scan_data  - The hash (see scantron_getfile)
+    $key        - shorthand of the key to edit (actual key is
+                  scantronfilename_key).
+    $data        - New value of the hash entry.
+    $delete      - If true, the entry is removed from the hash.
+
+  Returns:
+    The new value of the hash table field (undefined if deleted).
+
+=cut
+
+
 sub scan_data {
     my ($scan_data,$key,$value,$delete)=@_;
     my $filename=$env{'form.scantron_selectfile'};
@@ -4136,11 +5148,68 @@ sub scan_data {
     return $scan_data->{$filename.'_'.$key};
 }
 
+=pod 
+
+=item scantron_parse_scanline
+
+  Decodes a scanline from the selected scantron file
+
+ Arguments:
+    line             - The text of the scantron file line to process
+    whichline        - Line number
+    scantron_config  - Hash describing the format of the scantron lines.
+    scan_data        - Hash of extra information about the scanline
+                       (see scantron_getfile for more information)
+    just_header      - True if should not process question answers but only
+                       the stuff to the left of the answers.
+ Returns:
+   Hash containing the result of parsing the scanline
+
+   Keys are all proceeded by the string 'scantron.'
+
+       CODE    - the CODE in use for this scanline
+       useCODE - 1 if the CODE is invalid but it usage has been forced
+                 by the operator
+       CODE_ignore_dup - 1 if the CODE is a duplicated use when unique
+                            CODEs were selected, but the usage has been
+                            forced by the operator
+       ID  - student ID
+       PaperID - if used, the ID number printed on the sheet when the 
+                 paper was scanned
+       FirstName - first name from the sheet
+       LastName  - last name from the sheet
+
+     if just_header was not true these key may also exist
+
+       missingerror - a list of bubble ranges that are considered to be answers
+                      to a single question that don't have any bubbles filled in.
+                      Of the form questionnumber:firstbubblenumber:count.
+       doubleerror  - a list of bubble ranges that are considered to be answers
+                      to a single question that have more than one bubble filled in.
+                      Of the form questionnumber::firstbubblenumber:count
+   
+                In the above, count is the number of bubble responses in the
+                input line needed to represent the possible answers to the question.
+                e.g. a radioresponse with 15 choices in an answer sheet with 10 choices
+                per line would have count = 2.
+
+       maxquest     - the number of the last bubble line that was parsed
+
+       (<number> starts at 1)
+       <number>.answer - zero or more letters representing the selected
+                         letters from the scanline for the bubble line 
+                         <number>.
+                         if blank there was either no bubble or there where
+                         multiple bubbles, (consult the keys missingerror and
+                         doubleerror if this is an error condition)
+
+=cut
+
 sub scantron_parse_scanline {
-    my ($line,$whichline,$scantron_config,$scan_data,$justHeader)=@_;
+    my ($line,$whichline,$scantron_config,$scan_data,$just_header)=@_;
     my %record;
-    my $questions=substr($line,$$scantron_config{'Qstart'}-1);
-    my $data=substr($line,0,$$scantron_config{'Qstart'}-1);
+    my $questions=substr($line,$$scantron_config{'Qstart'}-1);  # Answers
+    my $data=substr($line,0,$$scantron_config{'Qstart'}-1);     # earlier stuff
     if (!($$scantron_config{'CODElocation'} eq 0 ||
 	  $$scantron_config{'CODElocation'} eq 'none')) {
 	if ($$scantron_config{'CODElocation'} < 0 ||
@@ -4170,62 +5239,153 @@ sub scantron_parse_scanline {
     $record{'scantron.LastName'}=
 	substr($data,$$scantron_config{'LastName'}-1,
 	       $$scantron_config{'LastNamelength'});
-    if ($justHeader) { return \%record; }
+    if ($just_header) { return \%record; }
 
     my @alphabet=('A'..'Z');
     my $questnum=0;
+    my $ansnum  =1;		# Multiple 'answer lines'/question.
+
     while ($questions) {
+	my $answers_needed = $bubble_lines_per_response{$questnum};
+	my $answer_length  = $$scantron_config{'Qlength'} * $answers_needed;
+
+
+
 	$questnum++;
-	my $currentquest=substr($questions,0,$$scantron_config{'Qlength'});
-	substr($questions,0,$$scantron_config{'Qlength'})='';
-	if (length($currentquest) < $$scantron_config{'Qlength'}) { next; }
+	my $currentquest = substr($questions,0,$answer_length);
+	$questions       = substr($questions,0,$answer_length)='';
+	if (length($currentquest) < $answer_length) { next; }
+
+	# Qon letter implies for each slot in currentquest we have:
+	#    ? or * for doubles a letter in A-Z for a bubble and
+        #    about anything else (esp. a value of Qoff for missing
+	#    bubbles.
+
+
 	if ($$scantron_config{'Qon'} eq 'letter') {
-	    if ($currentquest eq '?') {
+
+	    if ($currentquest =~ /\?/
+		|| $currentquest =~ /\*/
+		|| (&occurence_count($currentquest, "[A-Z]") > 1)) {
 		push(@{$record{'scantron.doubleerror'}},$questnum);
-		$record{"scantron.$questnum.answer"}='';
-	    } elsif (!$currentquest 
-		     || $currentquest eq $$scantron_config{'Qoff'}
-		     || $currentquest !~ /^[A-Z]$/) {
-		$record{"scantron.$questnum.answer"}='';
+		for (my $ans = 0; $ans < $answers_needed; $ans++) { 
+		    $record{"scantron.$ansnum.answer"}='';
+		    $ansnum++;
+		}
+
+	    } elsif (!defined($currentquest)
+		     || (&occurence_count($currentquest, $$scantron_config{'Qoff'}) == length($currentquest))
+		     || (&occurence_count($currentquest, "[A-Z]") == 0)) {
+		for (my $ans = 0; $ans < $answers_needed; $ans++ ) {
+		    $record{"scantron.$ansnum.answer"}='';
+		    $ansnum++;
+
+		}
 		if (!&scan_data($scan_data,"$whichline.no_bubble.$questnum")) {
 		    push(@{$record{"scantron.missingerror"}},$questnum);
+		    $ansnum += $answers_needed;
 		}
+
 	    } else {
-		$record{"scantron.$questnum.answer"}=$currentquest;
+		for (my $ans = 0; $ans < $answers_needed; $ans++) {
+		    $record{"scantron.$ansnum.answer"} = substr($currentquest, $ans, 1);
+		    $ansnum++;
+		}
 	    }
+
+	# Qon 'number' implies each slot gives a digit that indexes the
+	#    the bubbles filled or Qoff or a non number for unbubbled lines.
+        #    and *? for double bubbles on a line.
+	#    these answers are also stored as letters.
+
 	} elsif ($$scantron_config{'Qon'} eq 'number') {
-	    if ($currentquest eq '?') {
+	    if ($currentquest =~ /\?/
+		|| $currentquest =~ /\*/
+		|| (&occurence_count($currentquest, '\d') > 1)) {
 		push(@{$record{'scantron.doubleerror'}},$questnum);
-		$record{"scantron.$questnum.answer"}='';
-		} elsif (!$currentquest 
-			 || $currentquest eq $$scantron_config{'Qoff'} 
-			 || $currentquest !~ /^\d$/) {
-		$record{"scantron.$questnum.answer"}='';
+		for (my $ans = 0; $ans < $answers_needed; $ans++) {
+		    $record{"scantron.$ansnum.answer"}='';
+		    $ansnum++;
+		}
+
+	    } elsif (!defined($currentquest)
+		     || (&occurence_count($currentquest,$$scantron_config{'Qoff'}) == length($currentquest)) 
+		     || (&occurence_count($currentquest, '\d') == 0)) {
+		for (my $ans = 0; $ans < $answers_needed; $ans++ ) {
+		    $record{"scantron.$ansnum.answer"}='';
+		    $ansnum++;
+
+		}
 		if (!&scan_data($scan_data,"$whichline.no_bubble.$questnum")) {
 		    push(@{$record{"scantron.missingerror"}},$questnum);
+		    $ansnum += $answers_needed;
 		}
+
 	    } else {
-		$record{"scantron.$questnum.answer"}=
-		    $alphabet[$currentquest-1];
+		$currentquest = &digits_to_letters($currentquest);
+		for (my $ans =0; $ans < $answers_needed; $ans++) {
+		    $record{"scantron.$ansnum.answer"} = substr($currentquest, $ans, 1);
+		    $ansnum++;
+		}
 	    }
 	} else {
+
+	    # Otherwise there's a positional notation;
+	    # each bubble line requires Qlength items, and there are filled in
+	    # bubbles for each case where there 'Qon' characters.
+	    #
+
 	    my @array=split($$scantron_config{'Qon'},$currentquest,-1);
-	    if (length($array[0]) eq $$scantron_config{'Qlength'}) {
-		$record{"scantron.$questnum.answer"}='';
+
+	    # If the split only  giveas us one element.. the full length of the
+	    # answser string, no bubbles are filled in:
+
+	    if (length($array[0]) eq $$scantron_config{'Qlength'}*$answers_needed) {
+		for (my $ans = 0; $ans < $answers_needed; $ans++ ) {
+		    $record{"scantron.$ansnum.answer"}='';
+		    $ansnum++;
+
+		}
 		if (!&scan_data($scan_data,"$whichline.no_bubble.$questnum")) {
 		    push(@{$record{"scantron.missingerror"}},$questnum);
 		}
-	    } else {
-		$record{"scantron.$questnum.answer"}=
-		    $alphabet[length($array[0])];
+	    } elsif (scalar(@array) lt 2) {
+
+		my $location      = [length($array[0])];
+		my $line_num      = $location / $$scantron_config{'Qlength'};
+		my $bubble        = $alphabet[$location % $$scantron_config{'Qlength'}];
+
+		for (my $ans = 0; $ans < $answers_needed; $ans++) {
+		    if ($ans eq $line_num) {
+			$record{"scantron.$ansnum.answer"} = $bubble;
+		    } else {
+			$record{"scantron.$ansnum.answer"} = ' ';
+		    }
+		    $ansnum++;
+		}
 	    }
-	    if (scalar(@array) gt 2) {
+	    #  If there's more than one instance of a bubble character
+	    #  That's a double bubble; with positional notation we can
+	    #  record all the bubbles filled in as well as the 
+	    #  fact this response consists of multiple bubbles.
+	    #
+	    else {
 		push(@{$record{'scantron.doubleerror'}},$questnum);
+
+		my $first_answer = $ansnum;
+		for (my $ans =0; $ans < $answers_needed; $ans++) {
+		    $record{"scantron.$ansnum.answer"} = '';
+		    $ans++;
+		}
+
 		my @ans=@array;
 		my $i=length($ans[0]);shift(@ans);
 		while ($#ans) {
 		    $i+=length($ans[0])+1;
-		    $record{"scantron.$questnum.answer"}.=$alphabet[$i];
+		    my $line   = $i/$$scantron_config{'Qlength'} + $first_answer;
+		    my $bubble = $i%$$scantron_config{'Qlength'};
+
+		    $record{"scantron.$line.answer"}.=$alphabet[$bubble];
 		    shift(@ans);
 		}
 	    }
@@ -4235,6 +5395,24 @@ sub scantron_parse_scanline {
     return \%record;
 }
 
+=pod
+
+=item scantron_add_delay
+
+   Adds an error message that occurred during the grading phase to a
+   queue of messages to be shown after grading pass is complete
+
+ Arguments:
+   $delayqueue  - arrary ref of hash ref of error messages
+   $scanline    - the scanline that caused the error
+   $errormesage - the error message
+   $errorcode   - a numeric code for the error
+
+ Side Effects:
+   updates the $delayqueue to have a new hash ref of the error
+
+=cut
+
 sub scantron_add_delay {
     my ($delayqueue,$scanline,$errormessage,$errorcode)=@_;
     push(@$delayqueue,
@@ -4243,6 +5421,24 @@ sub scantron_add_delay {
 	 );
 }
 
+=pod
+
+=item scantron_find_student
+
+   Finds the username for the current scanline
+
+  Arguments:
+   $scantron_record - hash result from scantron_parse_scanline
+   $scan_data       - hash of correction information 
+                      (see &scantron_getfile() form more information)
+   $idmap           - hash from &username_to_idmap()
+   $line            - number of current scanline
+ 
+  Returns:
+   Either 'username:domain' or undef if unknown
+
+=cut
+
 sub scantron_find_student {
     my ($scantron_record,$scan_data,$idmap,$line)=@_;
     my $scanID=$$scantron_record{'scantron.ID'};
@@ -4257,15 +5453,40 @@ sub scantron_find_student {
     return undef;
 }
 
+=pod
+
+=item scantron_filter
+
+   Filter sub for lonnavmaps, filters out hidden resources if ignore
+   hidden resources was selected
+
+=cut
+
 sub scantron_filter {
     my ($curres)=@_;
-                        # randomout is dysfunctional at best for this purpose
-    if (ref($curres) && $curres->is_problem()) { #&& !$curres->randomout) {
+
+    if (ref($curres) && $curres->is_problem()) {
+	# if the user has asked to not have either hidden
+	# or 'randomout' controlled resources to be graded
+	# don't include them
+	if ($env{'form.scantron_options_hidden'} eq 'ignore_hidden'
+	    && $curres->randomout) {
+	    return 0;
+	}
 	return 1;
     }
     return 0;
 }
 
+=pod
+
+=item scantron_process_corrections
+
+   Gets correction information out of submitted form data and corrects
+   the scanline
+
+=cut
+
 sub scantron_process_corrections {
     my ($r) = @_;
     my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
@@ -4316,37 +5537,80 @@ sub scantron_process_corrections {
 	}
     }
     if ($err) {
-	$r->print("Unable to accept last correction, an error occurred :$errmsg:");
+	$r->print("<span class=\"LC_warning\">Unable to accept last correction, an error occurred :$errmsg:</span>");
     } else {
 	&scantron_put_line($scanlines,$scan_data,$which,$line,$skip);
 	&scantron_putfile($scanlines,$scan_data);
     }
 }
 
+=pod
+
+=item reset_skipping_status
+
+   Forgets the current set of remember skipped scanlines (and thus
+   reverts back to considering all lines in the
+   scantron_skipped_<filename> file)
+
+=cut
+
 sub reset_skipping_status {
     my ($scanlines,$scan_data)=&scantron_getfile();
     &scan_data($scan_data,'remember_skipping',undef,1);
     &scantron_putfile(undef,$scan_data);
 }
 
-sub allow_skipping {
+=pod
+
+=item start_skipping
+
+   Marks a scanline to be skipped. 
+
+=cut
+
+sub start_skipping {
     my ($scan_data,$i)=@_;
     my %remembered=split(':',&scan_data($scan_data,'remember_skipping'));
-    delete($remembered{$i});
+    if ($env{'form.scantron_options_redo'} =~ /^redo_/) {
+	$remembered{$i}=2;
+    } else {
+	$remembered{$i}=1;
+    }
     &scan_data($scan_data,'remember_skipping',join(':',%remembered));
 }
 
+=pod
+
+=item should_be_skipped
+
+   Checks whether a scanline should be skipped.
+
+=cut
+
 sub should_be_skipped {
-    my ($scan_data,$i)=@_;
+    my ($scanlines,$scan_data,$i)=@_;
     if ($env{'form.scantron_options_redo'} !~ /^redo_/) {
 	# not redoing old skips
+	if ($scanlines->{'skipped'}[$i]) { return 1; }
 	return 0;
     }
     my %remembered=split(':',&scan_data($scan_data,'remember_skipping'));
-    if (exists($remembered{$i})) { return 0; }
+
+    if (exists($remembered{$i}) && $remembered{$i} != 2 ) {
+	return 0;
+    }
     return 1;
 }
 
+=pod
+
+=item remember_current_skipped
+
+   Discovers what scanlines are in the scantron_skipped_<filename>
+   file and remembers them into scan_data for later use.
+
+=cut
+
 sub remember_current_skipped {
     my ($scanlines,$scan_data)=&scantron_getfile();
     my %to_remember;
@@ -4355,31 +5619,61 @@ sub remember_current_skipped {
 	    $to_remember{$i}=1;
 	}
     }
-    &Apache::lonnet::logthis('remembering '.join(':',%to_remember));
+
     &scan_data($scan_data,'remember_skipping',join(':',%to_remember));
     &scantron_putfile(undef,$scan_data);
 }
 
+=pod
+
+=item check_for_error
+
+    Checks if there was an error when attempting to remove a specific
+    scantron_.. bubble sheet data file. Prints out an error if
+    something went wrong.
+
+=cut
+
 sub check_for_error {
     my ($r,$result)=@_;
     if ($result ne 'ok' && $result ne 'not_found' ) {
-	$r->print("An error occured ($result) when trying to Remove the existing corrections.");
+	$r->print("An error occurred ($result) when trying to Remove the existing corrections.");
     }
 }
 
+=pod
+
+=item scantron_warning_screen
+
+   Interstitial screen to make sure the operator has selected the
+   correct options before we start the validation phase.
+
+=cut
+
 sub scantron_warning_screen {
     my ($button_text)=@_;
     my $title=&Apache::lonnet::gettitle($env{'form.selectpage'});
+    my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
+    my $CODElist;
+    if ($scantron_config{'CODElocation'} &&
+	$scantron_config{'CODEstart'} &&
+	$scantron_config{'CODElength'}) {
+	$CODElist=$env{'form.scantron_CODElist'};
+	if ($env{'form.scantron_CODElist'} eq '') { $CODElist='<span class="LC_warning">None</span>'; }
+	$CODElist=
+	    '<tr><td><b>List of CODES to validate against:</b></td><td><tt>'.
+	    $env{'form.scantron_CODElist'}.'</tt></td></tr>';
+    }
     return (<<STUFF);
 <p>
-<font color="red">Please double check the information
-                 below before clicking on '$button_text'</font>
+<span class="LC_warning">Please double check the information
+                 below before clicking on '$button_text'</span>
 </p>
 <table>
-<tr><td><b>Sequence To be Graded:</b></td><td>$title</td></tr>
+<tr><td><b>Sequence to be Graded:</b></td><td>$title</td></tr>
 <tr><td><b>Data File that will be used:</b></td><td><tt>$env{'form.scantron_selectfile'}</tt></td></tr>
+$CODElist
 </table>
-</font>
 <br />
 <p> If this information is correct, please click on '$button_text'.</p>
 <p> If something is incorrect, please click the 'Grading Menu' button to start over.</p>
@@ -4388,24 +5682,33 @@ sub scantron_warning_screen {
 STUFF
 }
 
+=pod
+
+=item scantron_do_warning
+
+   Check if the operator has picked something for all required
+   fields. Error out if something is missing.
+
+=cut
+
 sub scantron_do_warning {
     my ($r)=@_;
-    my ($symb,$url)=&get_symb_and_url($r);
+    my ($symb)=&get_symb($r);
     if (!$symb) {return '';}
-    my $default_form_data=&defaultFormData($symb,$url);
+    my $default_form_data=&defaultFormData($symb);
     $r->print(&scantron_form_start().$default_form_data);
     if ( $env{'form.selectpage'} eq '' ||
 	 $env{'form.scantron_selectfile'} eq '' ||
 	 $env{'form.scantron_format'} eq '' ) {
 	$r->print("<p>You have forgetten to specify some information. Please go Back and try again.</p>");
 	if ( $env{'form.selectpage'} eq '') {
-	    $r->print('<p><font color="red">You have not selected a Sequence to grade</font></p>');
+	    $r->print('<p><span class="LC_error">You have not selected a Sequence to grade</span></p>');
 	} 
 	if ( $env{'form.scantron_selectfile'} eq '') {
-	    $r->print('<p><font color="red">You have not selected a file that contains the student\'s response data.</font></p>');
+	    $r->print('<p><span class="LC_error">You have not selected a file that contains the student\'s response data.</span></p>');
 	} 
 	if ( $env{'form.scantron_format'} eq '') {
-	    $r->print('<p><font color="red">You have not selected a the format of the student\'s response data.</font></p>');
+	    $r->print('<p><span class="LC_error">You have not selected a the format of the student\'s response data.</span></p>');
 	} 
     } else {
 	my $warning=&scantron_warning_screen('Grading: Validate Records');
@@ -4415,10 +5718,18 @@ $warning
 <input type="hidden" name="command" value="scantron_validate" />
 STUFF
     }
-    $r->print("</form><br />".&show_grading_menu_form($symb,$url)."</body></html>");
+    $r->print("</form><br />".&show_grading_menu_form($symb));
     return '';
 }
 
+=pod
+
+=item scantron_form_start
+
+    html hidden input for remembering all selected grading options
+
+=cut
+
 sub scantron_form_start {
     my ($max_bubble)=@_;
     my $result= <<SCANTRONFORM;
@@ -4431,24 +5742,47 @@ sub scantron_form_start {
   <input type="hidden" name="scantron_CODEunique" value="$env{'form.scantron_CODEunique'}" />
   <input type="hidden" name="scantron_options_redo" value="$env{'form.scantron_options_redo'}" />
   <input type="hidden" name="scantron_options_ignore" value="$env{'form.scantron_options_ignore'}" />
+  <input type="hidden" name="scantron_options_hidden" value="$env{'form.scantron_options_hidden'}" />
 SCANTRONFORM
+
+  my $line = 0;
+    while (defined($env{"form.scantron.bubblelines.$line"})) {
+	&Apache::lonnet::logthis("Saving chunk for $line");
+       my $chunk =
+	   '<input type="hidden" name="scantron.bubblelines.'.$line.'" value="'.$env{"form.scantron.bubblelines.$line"}.'" />'."\n";
+       $chunk .=
+	   '<input type="hidden" name="scantron.first_bubble_line.'.$line.'" value="'.$env{"form.scantron.first_bubble_line.$line"}.'" />'."\n";
+       $result .= $chunk;
+       $line++;
+   }
     return $result;
 }
 
+=pod
+
+=item scantron_validate_file
+
+    Dispatch routine for doing validation of a bubble sheet data file.
+
+    Also processes any necessary information resets that need to
+    occur before validation begins (ignore previous corrections,
+    restarting the skipped records processing)
+
+=cut
+
 sub scantron_validate_file {
     my ($r) = @_;
-    my ($symb,$url)=&get_symb_and_url($r);
+    my ($symb)=&get_symb($r);
     if (!$symb) {return '';}
-    my $default_form_data=&defaultFormData($symb,$url);
+    my $default_form_data=&defaultFormData($symb);
     
     # do the detection of only doing skipped records first befroe we delete
-    # them  when doing the corrections reset
+    # them when doing the corrections reset
     if ($env{'form.scantron_options_redo'} ne 'redo_skipped_ready') {
 	&reset_skipping_status();
     }
     if ($env{'form.scantron_options_redo'} eq 'redo_skipped') {
 	&remember_current_skipped();
-	&scantron_remove_file('skipped');
 	$env{'form.scantron_options_redo'}='redo_skipped_ready';
     }
 
@@ -4462,14 +5796,15 @@ sub scantron_validate_file {
     if ($env{'form.scantron_corrections'}) {
 	&scantron_process_corrections($r);
     }
-    $r->print("<p>Gathering neccessary info.</p>");$r->rflush();
+    $r->print("<p>Gathering necessary info.</p>");$r->rflush();
     #get the student pick code ready
     $r->print(&Apache::loncommon::studentbrowser_javascript());
-    my $max_bubble=&scantron_get_maxbubble($r);
+    my $max_bubble=&scantron_get_maxbubble();
     my $result=&scantron_form_start($max_bubble).$default_form_data;
     $r->print($result);
     
-    my @validate_phases=( 'ID',
+    my @validate_phases=( 'sequence',
+			  'ID',
 			  'CODE',
 			  'doublebubble',
 			  'missingbubbles');
@@ -4478,6 +5813,8 @@ sub scantron_validate_file {
     }
     my $currentphase=$env{'form.validatepass'};
 
+    &Apache::lonnet::logthis("Phase: $currentphase");
+
     my $stop=0;
     while (!$stop && $currentphase < scalar(@validate_phases)) {
 	$r->print("<p> Validating ".$validate_phases[$currentphase]."</p>");
@@ -4502,16 +5839,33 @@ STUFF
 	$r->print("<input type='hidden' name='validatepass' value='".$currentphase."' />");
     }
     if ($stop) {
-	$r->print('<input type="submit" name="submit" value="Continue ->" />');
-	$r->print(' using corrected info <br />');
-	$r->print("<input type='submit' value='Skip' name='scantron_skip_record' />");
-	$r->print(" this scanline saving it for later.");
+	if ($validate_phases[$currentphase] eq 'sequence') {
+	    $r->print('<input type="submit" name="submit" value="Ignore -> " />');
+	    $r->print(' this error <br />');
+
+	    $r->print(" <p>Or click the 'Grading Menu' button to start over.</p>");
+	} else {
+	    $r->print('<input type="submit" name="submit" value="Continue ->" />');
+	    $r->print(' using corrected info <br />');
+	    $r->print("<input type='submit' value='Skip' name='scantron_skip_record' />");
+	    $r->print(" this scanline saving it for later.");
+	}
     }
-    $r->print(" </form><br />".&show_grading_menu_form($symb,$url).
-	      "</body></html>");
+    $r->print(" </form><br />".&show_grading_menu_form($symb));
     return '';
 }
 
+
+=pod
+
+=item scantron_remove_file
+
+   Removes the requested bubble sheet data file, makes sure that
+   scantron_original_<filename> is never removed
+
+
+=cut
+
 sub scantron_remove_file {
     my ($which)=@_;
     my $cname=$env{'course.'.$env{'request.course.id'}.'.num'};
@@ -4526,6 +5880,18 @@ sub scantron_remove_file {
     return &Apache::lonnet::removeuserfile($cname,$cdom,$file);
 }
 
+
+=pod
+
+=item scantron_remove_scan_data
+
+   Removes all scan_data correction for the requested bubble sheet
+   data file.  (In the case that both the are doing skipped records we need
+   to remember the old skipped lines for the time being so that element
+   persists for a while.)
+
+=cut
+
 sub scantron_remove_scan_data {
     my $cname=$env{'course.'.$env{'request.course.id'}.'.num'};
     my $cdom=$env{'course.'.$env{'request.course.id'}.'.domain'};
@@ -4548,6 +5914,51 @@ sub scantron_remove_scan_data {
     return $result;
 }
 
+
+=pod
+
+=item scantron_getfile
+
+    Fetches the requested bubble sheet data file (all 3 versions), and
+    the scan_data hash
+  
+  Arguments:
+    None
+
+  Returns:
+    2 hash references
+
+     - first one has 
+         orig      -
+         corrected -
+         skipped   -  each of which points to an array ref of the specified
+                      file broken up into individual lines
+         count     - number of scanlines
+ 
+     - second is the scan_data hash possible keys are
+       ($number refers to scanline numbered $number and thus the key affects
+        only that scanline
+        $bubline refers to the specific bubble line element and the aspects
+        refers to that specific bubble line element)
+
+       $number.user - username:domain to use
+       $number.CODE_ignore_dup 
+                    - ignore the duplicate CODE error 
+       $number.useCODE
+                    - use the CODE in the scanline as is
+       $number.no_bubble.$bubline
+                    - it is valid that there is no bubbled in bubble
+                      at $number $bubline
+       remember_skipping
+                    - a frozen hash containing keys of $number and values
+                      of either 
+                        1 - we are on a 'do skipped records pass' and plan
+                            on processing this line
+                        2 - we are on a 'do skipped records pass' and this
+                            scanline has been marked to skip yet again
+
+=cut
+
 sub scantron_getfile {
     #FIXME really would prefer a scantron directory
     my $cname=$env{'course.'.$env{'request.course.id'}.'.num'};
@@ -4580,6 +5991,21 @@ sub scantron_getfile {
     return (\%scanlines,\%scan_data);
 }
 
+=pod
+
+=item lonnet_putfile
+
+   Wrapper routine to call &Apache::lonnet::finishuserfileupload
+
+ Arguments:
+   $contents - data to store
+   $filename - filename to store $contents into
+
+ Returns:
+   result value from &Apache::lonnet::finishuserfileupload
+
+=cut
+
 sub lonnet_putfile {
     my ($contents,$filename)=@_;
     my $docuname=$env{'course.'.$env{'request.course.id'}.'.num'};
@@ -4589,6 +6015,22 @@ sub lonnet_putfile {
 
 }
 
+=pod
+
+=item scantron_putfile
+
+    Stores the current version of the bubble sheet data files, and the
+    scan_data hash. (Does not modify the original version only the
+    corrected and skipped versions.
+
+ Arguments:
+    $scanlines - hash ref that looks like the first return value from
+                 &scantron_getfile()
+    $scan_data - hash ref that looks like the second return value from
+                 &scantron_getfile()
+
+=cut
+
 sub scantron_putfile {
     my ($scanlines,$scan_data) = @_;
     #FIXME really would prefer a scantron directory
@@ -4609,14 +6051,53 @@ sub scantron_putfile {
     &Apache::lonnet::put('nohist_scantrondata',$scan_data,$cdom,$cname);
 }
 
+=pod
+
+=item scantron_get_line
+
+   Returns the correct version of the scanline
+
+ Arguments:
+    $scanlines - hash ref that looks like the first return value from
+                 &scantron_getfile()
+    $scan_data - hash ref that looks like the second return value from
+                 &scantron_getfile()
+    $i         - number of the requested line (starts at 0)
+
+ Returns:
+   A scanline, (either the original or the corrected one if it
+   exists), or undef if the requested scanline should be
+   skipped. (Either because it's an skipped scanline, or it's an
+   unskipped scanline and we are not doing a 'do skipped scanlines'
+   pass.
+
+=cut
+
 sub scantron_get_line {
     my ($scanlines,$scan_data,$i)=@_;
-    if (&should_be_skipped($scan_data,$i)) { return undef; }
-    if ($scanlines->{'skipped'}[$i]) { return undef; }
+    if (&should_be_skipped($scanlines,$scan_data,$i)) { return undef; }
+    #if ($scanlines->{'skipped'}[$i]) { return undef; }
     if ($scanlines->{'corrected'}[$i]) {return $scanlines->{'corrected'}[$i];}
     return $scanlines->{'orig'}[$i]; 
 }
 
+=pod
+
+=item scantron_todo_count
+
+    Counts the number of scanlines that need processing.
+
+ Arguments:
+    $scanlines - hash ref that looks like the first return value from
+                 &scantron_getfile()
+    $scan_data - hash ref that looks like the second return value from
+                 &scantron_getfile()
+
+ Returns:
+    $count - number of scanlines to process
+
+=cut
+
 sub get_todo_count {
     my ($scanlines,$scan_data)=@_;
     my $count=0;
@@ -4628,16 +6109,125 @@ sub get_todo_count {
     return $count;
 }
 
+=pod
+
+=item scantron_put_line
+
+    Updates the 'corrected' or 'skipped' versions of the bubble sheet
+    data file.
+
+ Arguments:
+    $scanlines - hash ref that looks like the first return value from
+                 &scantron_getfile()
+    $scan_data - hash ref that looks like the second return value from
+                 &scantron_getfile()
+    $i         - line number to update
+    $newline   - contents of the updated scanline
+    $skip      - if true make the line for skipping and update the
+                 'skipped' file
+
+=cut
+
 sub scantron_put_line {
     my ($scanlines,$scan_data,$i,$newline,$skip)=@_;
     if ($skip) {
 	$scanlines->{'skipped'}[$i]=$newline;
-	&allow_skipping($scan_data,$i);
+	&start_skipping($scan_data,$i);
 	return;
     }
     $scanlines->{'corrected'}[$i]=$newline;
 }
 
+=pod
+
+=item scantron_clear_skip
+
+   Remove a line from the 'skipped' file
+
+ Arguments:
+    $scanlines - hash ref that looks like the first return value from
+                 &scantron_getfile()
+    $scan_data - hash ref that looks like the second return value from
+                 &scantron_getfile()
+    $i         - line number to update
+
+=cut
+
+sub scantron_clear_skip {
+    my ($scanlines,$scan_data,$i)=@_;
+    if (exists($scanlines->{'skipped'}[$i])) {
+	undef($scanlines->{'skipped'}[$i]);
+	return 1;
+    }
+    return 0;
+}
+
+=pod
+
+=item scantron_filter_not_exam
+
+   Filter routine used by &Apache::lonnavmaps::retrieveResources(), to
+   filter out resources that are not marked as 'exam' mode
+
+=cut
+
+sub scantron_filter_not_exam {
+    my ($curres)=@_;
+    
+    if (ref($curres) && $curres->is_problem() && !$curres->is_exam()) {
+	# if the user has asked to not have either hidden
+	# or 'randomout' controlled resources to be graded
+	# don't include them
+	if ($env{'form.scantron_options_hidden'} eq 'ignore_hidden'
+	    && $curres->randomout) {
+	    return 0;
+	}
+	return 1;
+    }
+    return 0;
+}
+
+=pod
+
+=item scantron_validate_sequence
+
+    Validates the selected sequence, checking for resource that are
+    not set to exam mode.
+
+=cut
+
+sub scantron_validate_sequence {
+    my ($r,$currentphase) = @_;
+
+    my $navmap=Apache::lonnavmaps::navmap->new();
+    my (undef,undef,$sequence)=
+	&Apache::lonnet::decode_symb($env{'form.selectpage'});
+
+    my $map=$navmap->getResourceByUrl($sequence);
+
+    $r->print('<input type="hidden" name="validate_sequence_exam"
+                                    value="ignore" />');
+    if ($env{'form.validate_sequence_exam'} ne 'ignore') {
+	my @resources=
+	    $navmap->retrieveResources($map,\&scantron_filter_not_exam,1,0);
+	if (@resources) {
+	    $r->print("<p>".&mt('Some resources in the sequence currently are not set to exam mode. Grading these resources currently may not work correctly.')."</p>");
+	    return (1,$currentphase);
+	}
+    }
+
+    return (0,$currentphase+1);
+}
+
+=pod
+
+=item scantron_validate_ID
+
+   Validates all scanlines in the selected file to not have any
+   invalid or underspecified student IDs
+
+=cut
+
 sub scantron_validate_ID {
     my ($r,$currentphase) = @_;
     
@@ -4648,6 +6238,8 @@ sub scantron_validate_ID {
     #get scantron line setup
     my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
     my ($scanlines,$scan_data)=&scantron_getfile();
+    
+    &scantron_get_maxbubble();	# parse needs the bubble_lines.. array.
 
     my %found=('ids'=>{},'usernames'=>{});
     for (my $i=0;$i<=$scanlines->{'count'};$i++) {
@@ -4700,6 +6292,36 @@ sub scantron_validate_ID {
     return (0,$currentphase+1);
 }
 
+=pod
+
+=item scantron_get_correction
+
+   Builds the interface screen to interact with the operator to fix a
+   specific error condition in a specific scanline
+
+ Arguments:
+    $r           - Apache request object
+    $i           - number of the current scanline
+    $scan_record - hash ref as returned from &scantron_parse_scanline()
+    $scan_config - hash ref as returned from &get_scantron_config()
+    $line        - full contents of the current scanline
+    $error       - error condition, valid values are
+                   'incorrectCODE', 'duplicateCODE',
+                   'doublebubble', 'missingbubble',
+                   'duplicateID', 'incorrectID'
+    $arg         - extra information needed
+       For errors:
+         - duplicateID   - paper number that this studentID was seen before on
+         - duplicateCODE - array ref of the paper numbers this CODE was
+                           seen on before
+         - incorrectCODE - current incorrect CODE 
+         - doublebubble  - array ref of the bubble lines that have double
+                           bubble errors
+         - missingbubble - array ref of the bubble lines that have missing
+                           bubble errors
+
+=cut
+
 sub scantron_get_correction {
     my ($r,$i,$scan_record,$scan_config,$line,$error,$arg)=@_;
 
@@ -4708,7 +6330,7 @@ sub scantron_get_correction {
 #the previous one or the current one
 
     $r->print("<p><b>An error was detected ($error)</b>");
-    if ( defined($$scan_record{'scantron.PaperID'}) ) {
+    if ( $$scan_record{'scantron.PaperID'} =~ /\S/) {
 	$r->print(" for PaperID <tt>".
 		  $$scan_record{'scantron.PaperID'}."</tt> \n");
     } else {
@@ -4759,7 +6381,7 @@ sub scantron_get_correction {
 	    if ($closest > 0) {
 		foreach my $testcode (@{$closest}) {
 		    my $checked='';
-		    if (!$i) { $checked=' checked="on" '; }
+		    if (!$i) { $checked=' checked="checked" '; }
 		    $r->print("<label><input type='radio' name='scantron_CODE_resolution' value='use_closest_$i' $checked /> Use the similar CODE <b><tt>".$testcode."</tt></b> instead.</label><input type='hidden' name='scantron_CODE_closest_$i' value='$testcode' />");
 		    $r->print("\n<br />");
 		    $i++;
@@ -4767,7 +6389,7 @@ sub scantron_get_correction {
 	    }
 	}
 	if ($$scan_record{'scantron.CODE'}=~/\S/ ) {
-	    my $checked; if (!$i) { $checked=' checked="on" '; }
+	    my $checked; if (!$i) { $checked=' checked="checked" '; }
 	    $r->print("<label><input type='radio' name='scantron_CODE_resolution' value='use_unfound' $checked /> Use the CODE <b><tt>".$$scan_record{'scantron.CODE'}."</tt></b> that is was on the paper, ignoring the error.</label>");
 	    $r->print("\n<br />");
 	}
@@ -4784,13 +6406,15 @@ function change_radio(field) {
 </script>
 ENDSCRIPT
 	my $href="/adm/pickcode?".
-	   "form=".&Apache::lonnet::escape("scantronupload").
-	   "&scantron_format=".&Apache::lonnet::escape($env{'form.scantron_format'}).
-	   "&scantron_CODElist=".&Apache::lonnet::escape($env{'form.scantron_CODElist'}).
-	   "&curCODE=".&Apache::lonnet::escape($$scan_record{'scantron.CODE'}).
-	   "&scantron_selectfile=".&Apache::lonnet::escape($env{'form.scantron_selectfile'});
-	$r->print("<label><input type='radio' name='scantron_CODE_resolution' value='use_found' /> <a target='_blank' href='$href'>Select</a> a CODE from the list of all CODEs and use it.</label> Selected CODE is <input readonly='true' type='text' size='8' name='scantron_CODE_selectedvalue' onfocus=\"javascript:change_radio('use_found')\" onchange=\"javascript:change_radio('use_found')\" />");
-	$r->print("\n<br />");
+	   "form=".&escape("scantronupload").
+	   "&scantron_format=".&escape($env{'form.scantron_format'}).
+	   "&scantron_CODElist=".&escape($env{'form.scantron_CODElist'}).
+	   "&curCODE=".&escape($$scan_record{'scantron.CODE'}).
+	   "&scantron_selectfile=".&escape($env{'form.scantron_selectfile'});
+	if ($env{'form.scantron_CODElist'} =~ /\S/) { 
+	    $r->print("<label><input type='radio' name='scantron_CODE_resolution' value='use_found' /> <a target='_blank' href='$href'>Select</a> a CODE from the list of all CODEs and use it.</label> Selected CODE is <input readonly='true' type='text' size='8' name='scantron_CODE_selectedvalue' onfocus=\"javascript:change_radio('use_found')\" onchange=\"javascript:change_radio('use_found')\" />");
+	    $r->print("\n<br />");
+	}
 	$r->print("<label><input type='radio' name='scantron_CODE_resolution' value='use_typed' /> Use </label><input type='text' size='8' name='scantron_CODE_newvalue' onfocus=\"javascript:change_radio('use_typed')\" onkeypress=\"javascript:change_radio('use_typed')\" /> as the CODE.");
 	$r->print("\n<br /><br />");
     } elsif ($error eq 'doublebubble') {
@@ -4800,8 +6424,10 @@ ENDSCRIPT
 	$r->print($message);
 	$r->print("<p>Please indicate which bubble should be used for grading</p>");
 	foreach my $question (@{$arg}) {
-	    my $selected=$$scan_record{"scantron.$question.answer"};
-	    &scantron_bubble_selector($r,$scan_config,$question,split('',$selected));
+
+	    my $selected  = &get_response_bubbles($scan_record, $question);
+	    &scantron_bubble_selector($r,$scan_config,$question,
+				      split('',$selected));
 	}
     } elsif ($error eq 'missingbubble') {
 	$r->print("<p>There have been <b>no</b> bubbles scanned for some question(s)</p>\n");
@@ -4811,7 +6437,7 @@ ENDSCRIPT
 	$r->print('<input type="hidden" name="scantron_questions" value="'.
 		  join(',',@{$arg}).'" />');
 	foreach my $question (@{$arg}) {
-	    my $selected=$$scan_record{"scantron.$question.answer"};
+	    my $selected = &get_response_bubbles($scan_record, $question);
 	    &scantron_bubble_selector($r,$scan_config,$question);
 	}
     } else {
@@ -4821,32 +6447,100 @@ ENDSCRIPT
 
 }
 
+=pod
+
+=item scantron_bubble_selector
+  
+   Generates the html radiobuttons to correct a single bubble line
+   possibly showing the existing the selected bubbles if known
+
+ Arguments:
+    $r           - Apache request object
+    $scan_config - hash from &get_scantron_config()
+    $quest       - number of the bubble line to make a corrector for
+    $selected    - array of letters of previously selected bubbles
+
+=cut
+
 sub scantron_bubble_selector {
     my ($r,$scan_config,$quest,@selected)=@_;
     my $max=$$scan_config{'Qlength'};
 
     my $scmode=$$scan_config{'Qon'};
+
+
     if ($scmode eq 'number' || $scmode eq 'letter') { $max=10; }	     
 
+    my $response = $quest-1;
+    my $lines = $bubble_lines_per_response{$response};
+    &Apache::lonnet::logthis("Question $quest, lines: $lines");
+
+    my $total_lines = $lines*2;
     my @alphabet=('A'..'Z');
-    $r->print("<table border='1'><tr><td rowspan='2'>$quest</td>");
-    for (my $i=0;$i<$max+1;$i++) {
-	$r->print("\n".'<td align="center">');
-	if ($selected[0] eq $alphabet[$i]) { $r->print('X'); shift(@selected) }
-	else { $r->print('&nbsp;'); }
-	$r->print('</td>');
-    }
-    $r->print('</tr><tr>');
-    for (my $i=0;$i<$max;$i++) {
-	$r->print("\n".
-		  '<td><label><input type="radio" name="scantron_correct_Q_'.
-		  $quest.'" value="'.$i.'" />'.$alphabet[$i]."</label></td>");
-    }
-    $r->print('<td><label><input type="radio" name="scantron_correct_Q_'.
+    $r->print("<table border='1'><tr><td rowspan='".$total_lines."'>$quest</td>");
+
+    for (my $l = 0; $l < $lines; $l++) {
+	if ($l != 0) {
+	    $r->print('<tr>');
+	}
+
+	# FIXME:  This loop probably has to be considerably more clever for
+	#  multiline bubbles: User can multibubble by having bubbles in
+	#  several lines.  User can skip lines legitimately etc. etc.
+
+	for (my $i=0;$i<$max;$i++) {
+	    $r->print("\n".'<td align="center">');
+	    if ($selected[0] eq $alphabet[$i]) { 
+		$r->print('X'); 
+		shift(@selected) ;
+	    } else { 
+		$r->print('&nbsp;'); 
+	    }
+	    $r->print('</td>');
+	    
+	}
+
+	if ($l == 0) {
+	    my $lspan = $total_lines * 2;   #  2 table rows per bubble line.
+
+	    $r->print('<td rowspan='.$lspan.'><label><input type="radio" name="scantron_correct_Q_'.
 	      $quest.'" value="none" /> No bubble </label></td>');
-    $r->print('</tr></table>');
+	
+	}
+
+	$r->print('</tr><tr>');
+
+	# FIXME: This may have to be a bit more clever for
+	#        multiline questions (different values e.g..).
+
+	for (my $i=0;$i<$max;$i++) {
+	    $r->print("\n".
+		      '<td><label><input type="radio" name="scantron_correct_Q_'.
+		      $quest.'" value="'.$i.'" />'.$alphabet[$i]."</label></td>");
+	}
+	$r->print('</tr>');
+
+	    
+    }
+    $r->print('</table>');
 }
 
+=pod
+
+=item num_matches
+
+   Counts the number of characters that are the same between the two arguments.
+
+ Arguments:
+   $orig - CODE from the scanline
+   $code - CODE to match against
+
+ Returns:
+   $count - integer count of the number of same characters between the
+            two arguments
+
+=cut
+
 sub num_matches {
     my ($orig,$code) = @_;
     my @code=split(//,$code);
@@ -4858,6 +6552,26 @@ sub num_matches {
     return $same;
 }
 
+=pod
+
+=item scantron_get_closely_matching_CODEs
+
+   Cycles through all CODEs and finds the set that has the greatest
+   number of same characters as the provided CODE
+
+ Arguments:
+   $allcodes - hash ref returned by &get_codes()
+   $CODE     - CODE from the current scanline
+
+ Returns:
+   2 element list
+    - first elements is number of how closely matching the best fit is 
+      (5 means best set has 5 matching characters)
+    - second element is an arrary ref containing the set of valid CODEs
+      that best fit the passed in CODE
+
+=cut
+
 sub scantron_get_closely_matching_CODEs {
     my ($allcodes,$CODE)=@_;
     my @CODEs;
@@ -4868,10 +6582,34 @@ sub scantron_get_closely_matching_CODEs
     return ($#CODEs,$CODEs[-1]);
 }
 
+=pod
+
+=item get_codes
+
+   Builds a hash which has keys of all of the valid CODEs from the selected
+   set of remembered CODEs.
+
+ Arguments:
+  $old_name - name of the set of remembered CODEs
+  $cdom     - domain of the course
+  $cnum     - internal course name
+
+ Returns:
+  %allcodes - keys are the valid CODEs, values are all 1
+
+=cut
+
 sub get_codes {
-    my $old_name=$env{'form.scantron_CODElist'};
-    my $cdom =$env{'course.'.$env{'request.course.id'}.'.domain'};
-    my $cnum =$env{'course.'.$env{'request.course.id'}.'.num'};
+    my ($old_name, $cdom, $cnum) = @_;
+    if (!$old_name) {
+	$old_name=$env{'form.scantron_CODElist'};
+    }
+    if (!$cdom) {
+	$cdom =$env{'course.'.$env{'request.course.id'}.'.domain'};
+    }
+    if (!$cnum) {
+	$cnum =$env{'course.'.$env{'request.course.id'}.'.num'};
+    }
     my %result=&Apache::lonnet::get('CODEs',[$old_name,"type\0$old_name"],
 				    $cdom,$cnum);
     my %allcodes;
@@ -4883,6 +6621,16 @@ sub get_codes {
     return %allcodes;
 }
 
+=pod
+
+=item scantron_validate_CODE
+
+   Validates all scanlines in the selected file to not have any
+   invalid or underspecified CODEs and that none of the codes are
+   duplicated if this was requested.
+
+=cut
+
 sub scantron_validate_CODE {
     my ($r,$currentphase) = @_;
     my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
@@ -4900,6 +6648,8 @@ sub scantron_validate_CODE {
 
     my %allcodes=&get_codes();
 
+    &scantron_get_maxbubble();	# parse needs the lines per response array.
+
     my ($scanlines,$scan_data)=&scantron_getfile();
     for (my $i=0;$i<=$scanlines->{'count'};$i++) {
 	my $line=&scantron_get_line($scanlines,$scan_data,$i);
@@ -4934,6 +6684,15 @@ sub scantron_validate_CODE {
     return (0,$currentphase+1);
 }
 
+=pod
+
+=item scantron_validate_doublebubble
+
+   Validates all scanlines in the selected file to not have any
+   bubble lines with multiple bubbles marked.
+
+=cut
+
 sub scantron_validate_doublebubble {
     my ($r,$currentphase) = @_;
     #get student info
@@ -4943,6 +6702,9 @@ sub scantron_validate_doublebubble {
     #get scantron line setup
     my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
     my ($scanlines,$scan_data)=&scantron_getfile();
+
+    &scantron_get_maxbubble();	# parse needs the bubble line array.
+
     for (my $i=0;$i<=$scanlines->{'count'};$i++) {
 	my $line=&scantron_get_line($scanlines,$scan_data,$i);
 	if ($line=~/^[\s\cz]*$/) { next; }
@@ -4957,31 +6719,103 @@ sub scantron_validate_doublebubble {
     return (0,$currentphase+1);
 }
 
-sub scantron_get_maxbubble {
-    my ($r)=@_;
+=pod
+
+=item scantron_get_maxbubble
+
+   Returns the maximum number of bubble lines that are expected to
+   occur. Does this by walking the selected sequence rendering the
+   resource and then checking &Apache::lonxml::get_problem_counter()
+   for what the current value of the problem counter is.
+
+   Caches the results to $env{'form.scantron_maxbubble'},
+   $env{'form.scantron.bubble_lines.n'} and 
+   $env{'form.scantron.first_bubble_line.n'}
+   which are the total number of bubble, lines, the number of bubble
+   lines for reponse n and number of the first bubble line for response n.
+
+=cut
+
+sub scantron_get_maxbubble {    
+    &Apache::lonnet::logthis("get_max_bubble");
     if (defined($env{'form.scantron_maxbubble'}) &&
 	$env{'form.scantron_maxbubble'}) {
+	&Apache::lonnet::logthis("cached");
+	&restore_bubble_lines();
 	return $env{'form.scantron_maxbubble'};
     }
-    my $navmap=Apache::lonnavmaps::navmap->new();
-    my (undef,undef,$sequence)=
+    &Apache::lonnet::logthis("computing");
+
+    my (undef, undef, $sequence) =
 	&Apache::lonnet::decode_symb($env{'form.selectpage'});
+
+    my $navmap=Apache::lonnavmaps::navmap->new();
     my $map=$navmap->getResourceByUrl($sequence);
     my @resources=$navmap->retrieveResources($map,\&scantron_filter,1,0);
-    &Apache::lonnet::delenv('form.counter');
+
+    &Apache::lonxml::clear_problem_counter();
+
+    my $uname       = $env{'form.student'};
+    my $udom        = $env{'form.userdom'};
+    my $cid         = $env{'request.course.id'};
+    my $total_lines = 0;
+    %bubble_lines_per_response = ();
+    %first_bubble_line         = ();
+
+  
+    my $response_number = 0;
+    my $bubble_line     = 0;
     foreach my $resource (@resources) {
-	my $result=&Apache::lonnet::ssi($resource->src().'?symb='.&Apache::lonnet::escape($resource->symb()));
+	my $symb = $resource->symb();
+	&Apache::lonxml::clear_bubble_lines_for_part();
+	my $result=&Apache::lonnet::ssi($resource->src(),
+					('symb' => $resource->symb()),
+					('grade_target' => 'analyze'),
+					('grade_courseid' => $cid),
+					('grade_domain' => $udom),
+					('grade_username' => $uname));
+	my (undef, $an) =
+	    split(/_HASH_REF__/,$result, 2);
+
+	my %analysis = &Apache::lonnet::str2hash($an);
+
+
+
+	foreach my $part_id (@{$analysis{'parts'}}) {
+	    my ($trash, $part) = split(/\./, $part_id);
+
+	    my $lines = $analysis{"$part_id.bubble_lines"}[0];
+
+	    # TODO - make this a persistent hash not an array.
+
+
+	    $first_bubble_line{$response_number}           = $bubble_line;
+	    $bubble_lines_per_response{$response_number}   = $lines;
+	    $response_number++;
+
+	    $bubble_line +=  $lines;
+	    $total_lines +=  $lines;
+	}
+
     }
     &Apache::lonnet::delenv('scantron\.');
-    my $envfile=$env{'user.environment'};
-    $envfile=~/\/([^\/]+)\.id$/;
-    $envfile=$1;
-    &Apache::lonnet::transfer_profile_to_env($r->dir_config('lonIDsDir'),
-					     $envfile);
-    $env{'form.scantron_maxbubble'}=$env{'form.counter'}-1;
+
+    &save_bubble_lines();
+    $env{'form.scantron_maxbubble'} =
+	$total_lines;
     return $env{'form.scantron_maxbubble'};
 }
 
+=pod
+
+=item scantron_validate_missingbubbles
+
+   Validates all scanlines in the selected file to not have any
+    answers that don't have bubbles that have not been verified
+    to be bubble free.
+
+=cut
+
 sub scantron_validate_missingbubbles {
     my ($r,$currentphase) = @_;
     #get student info
@@ -5014,12 +6848,36 @@ sub scantron_validate_missingbubbles {
     return (0,$currentphase+1);
 }
 
+=pod
+
+=item scantron_process_students
+
+   Routine that does the actual grading of the bubble sheet information.
+
+   The parsed scanline hash is added to %env 
+
+   Then foreach unskipped scanline it does an &Apache::lonnet::ssi()
+   foreach resource , with the form data of
+
+	'submitted'     =>'scantron' 
+	'grade_target'  =>'grade',
+	'grade_username'=> username of student
+	'grade_domain'  => domain of student
+	'grade_courseid'=> of course
+	'grade_symb'    => symb of resource to grade
+
+    This triggers a grading pass. The problem grading code takes care
+    of converting the bubbled letter information (now in %env) into a
+    valid submission.
+
+=cut
+
 sub scantron_process_students {
     my ($r) = @_;
     my (undef,undef,$sequence)=&Apache::lonnet::decode_symb($env{'form.selectpage'});
-    my ($symb,$url)=&get_symb_and_url($r);
+    my ($symb)=&get_symb($r);
     if (!$symb) {return '';}
-    my $default_form_data=&defaultFormData($symb,$url);
+    my $default_form_data=&defaultFormData($symb);
 
     my %scantron_config=&get_scantron_config($env{'form.scantron_format'});
     my ($scanlines,$scan_data)=&scantron_getfile();
@@ -5048,6 +6906,9 @@ SCANTRONFORM
     my $start=&Time::HiRes::time();
     my $i=-1;
     my ($uname,$udom,$started);
+
+    &scantron_get_maxbubble();	# Need the bubble lines array to parse.
+
     while ($i<$scanlines->{'count'}) {
  	($uname,$udom)=('','');
  	$i++;
@@ -5072,8 +6933,13 @@ SCANTRONFORM
  	    next;
  	}
   	($uname,$udom)=split(/:/,$uname);
-  	&Apache::lonnet::delenv('form.counter');
+
+	&Apache::lonxml::clear_problem_counter();
   	&Apache::lonnet::appenv(%$scan_record);
+
+	if (&scantron_clear_skip($scanlines,$scan_data,$i)) {
+	    &scantron_putfile($scanlines,$scan_data);
+	}
 	
 	my $i=0;
 	foreach my $resource (@resources) {
@@ -5084,23 +6950,22 @@ SCANTRONFORM
 		      'grade_domain'  =>$udom,
 		      'grade_courseid'=>$env{'request.course.id'},
 		      'grade_symb'    =>$resource->symb());
-	    if (exists($scan_record->{'scantron.CODE'}) &&
-		$scan_record->{'scantron.CODE'}) {
+	    if (exists($scan_record->{'scantron.CODE'})
+		&& 
+		&Apache::lonnet::validCODE($scan_record->{'scantron.CODE'})) {
 		$form{'CODE'}=$scan_record->{'scantron.CODE'};
 	    } else {
 		$form{'CODE'}='';
 	    }
 	    my $result=&Apache::lonnet::ssi($resource->src(),%form);
 	    if ($result ne '') {
-		&Apache::lonnet::logthis("scantron grading error -> $result");
-		&Apache::lonnet::logthis("scantron grading error info name $uname domain $udom course $env{'request.course.id'} url ".$resource->src());
 	    }
 	    if (&Apache::loncommon::connection_aborted($r)) { last; }
 	}
 	$completedstudents{$uname}={'line'=>$line};
 	if (&Apache::loncommon::connection_aborted($r)) { last; }
     } continue {
-	&Apache::lonnet::delenv('form.counter');
+	&Apache::lonxml::clear_problem_counter();
 	&Apache::lonnet::delenv('scantron\.');
     }
     &Apache::lonhtmlcommon::Close_PrgWin($r,\%prog_state);
@@ -5108,10 +6973,18 @@ SCANTRONFORM
 #    $r->print("<p>took $lasttime</p>");
 
     $r->print("</form>");
-    $r->print(&show_grading_menu_form($symb,$url));
+    $r->print(&show_grading_menu_form($symb));
     return '';
 }
 
+=pod
+
+=item scantron_upload_scantron_data
+
+    Creates the screen for adding a new bubble sheet data file to a course.
+
+=cut
+
 sub scantron_upload_scantron_data {
     my ($r)=@_;
     $r->print(&Apache::loncommon::coursebrowser_javascript($env{'request.role.domain'}));
@@ -5120,7 +6993,7 @@ sub scantron_upload_scantron_data {
 							  'coursename');
     my $domsel=&Apache::loncommon::select_dom_form($env{'request.role.domain'},
 						   'domainid');
-    my $default_form_data=&defaultFormData(&get_symb_and_url($r,1));
+    my $default_form_data=&defaultFormData(&get_symb($r,1));
     $r->print(<<UPLOAD);
 <script type="text/javascript" language="javascript">
     function checkUpload(formname) {
@@ -5148,9 +7021,18 @@ UPLOAD
     return '';
 }
 
+=pod
+
+=item scantron_upload_scantron_data_save
+
+   Adds a provided bubble information data file to the course if user
+   has the correct privileges to do so.  
+
+=cut
+
 sub scantron_upload_scantron_data_save {
     my($r)=@_;
-    my ($symb,$url)=&get_symb_and_url($r,1);
+    my ($symb)=&get_symb($r,1);
     my $doanotherupload=
 	'<br /><form action="/adm/grades" method="post">'."\n".
 	'<input type="hidden" name="command" value="scantronupload" />'."\n".
@@ -5161,7 +7043,7 @@ sub scantron_upload_scantron_data_save {
 			    $env{'form.domainid'}.'_'.$env{'form.courseid'})) {
 	$r->print("You are not allowed to upload Scantron data to the requested course.<br />");
 	if ($symb) {
-	    $r->print(&show_grading_menu_form($symb,$url));
+	    $r->print(&show_grading_menu_form($symb));
 	} else {
 	    $r->print($doanotherupload);
 	}
@@ -5186,13 +7068,13 @@ sub scantron_upload_scantron_data_save {
     my $uploadedfile=$fname;
     $fname='scantron_orig_'.$fname;
     if (length($env{'form.upfile'}) < 2) {
-	$r->print("<font color='red'>Error:</font> The file you attempted to upload, <tt>".&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"')."</tt>, contained no information. Please check that you entered the correct filename.");
+	$r->print("<span class=\"LC_error\">Error:</span> The file you attempted to upload, <tt>".&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"')."</tt>, contained no information. Please check that you entered the correct filename.");
     } else {
 	my $result=&Apache::lonnet::finishuserfileupload($env{'form.courseid'},$env{'form.domainid'},'upfile',$fname);
 	if ($result =~ m|^/uploaded/|) {
-	    $r->print("<font color='green'>Success:</font> Successfully uploaded ".(length($env{'form.upfile'})-1)." bytes of data into location <tt>".$result."</tt>");
+	    $r->print("<span class=\"LC_success\">Success:</span> Successfully uploaded ".(length($env{'form.upfile'})-1)." bytes of data into location <tt>".$result."</tt>");
 	} else {
-	    $r->print("<font color='red'>Error:</font> An error (".$result.") occurred when attempting to upload the file, <tt>".&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"')."</tt>");
+	    $r->print("<span class=\"LC_error\">Error:</span> An error (".$result.") occurred when attempting to upload the file, <tt>".&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"')."</tt>");
 	}
     }
     if ($symb) {
@@ -5203,18 +7085,35 @@ sub scantron_upload_scantron_data_save {
     return '';
 }
 
+=pod
+
+=item valid_file
+
+   Validates that the requested bubble data file exists in the course.
+
+=cut
+
 sub valid_file {
     my ($requested_file)=@_;
     foreach my $filename (sort(&scantron_filenames())) {
-	&Apache::lonnet::logthis("$requested_file  $filename");
 	if ($requested_file eq $filename) { return 1; }
     }
     return 0;
 }
 
+=pod
+
+=item scantron_download_scantron_data
+
+   Shows a list of the three internal files (original, corrected,
+   skipped) for a specific bubble sheet data file that exists in the
+   course.
+
+=cut
+
 sub scantron_download_scantron_data {
     my ($r)=@_;
-    my $default_form_data=&defaultFormData(&get_symb_and_url($r,1));
+    my $default_form_data=&defaultFormData(&get_symb($r,1));
     my $cname=$env{'course.'.$env{'request.course.id'}.'.num'};
     my $cdom=$env{'course.'.$env{'request.course.id'}.'.domain'};
     my $file=$env{'form.scantron_selectfile'};
@@ -5224,7 +7123,7 @@ sub scantron_download_scantron_data {
 	    The requested file name was invalid.
         </p>
 ERROR
-	$r->print(&show_grading_menu_form(&get_symb_and_url($r,1)));
+	$r->print(&show_grading_menu_form(&get_symb($r,1)));
 	return;
     }
     my $orig='/uploaded/'.$cdom.'/'.$cname.'/scantron_orig_'.$file;
@@ -5244,10 +7143,16 @@ ERROR
 	<a href="$skipped">Skipped</a>, a file of records that were skipped.
     </p>
 DOWNLOAD
-    $r->print(&show_grading_menu_form(&get_symb_and_url($r,1)));
+    $r->print(&show_grading_menu_form(&get_symb($r,1)));
     return '';
 }
 
+=pod
+
+=back
+
+=cut
+
 #-------- end of section for handling grading scantron forms -------
 #
 #-------------------------------------------------------------------
@@ -5256,10 +7161,9 @@ DOWNLOAD
 #
 #--- Show a Grading Menu button - Calls the next routine ---
 sub show_grading_menu_form {
-    my ($symb,$url)=@_;
+    my ($symb)=@_;
     my $result.='<br /><form action="/adm/grades" method="post">'."\n".
-	'<input type="hidden" name="symb" value="'.$symb.'" />'."\n".
-	'<input type="hidden" name="url" value="'.$url.'" />'."\n".
+	'<input type="hidden" name="symb" value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n".
 	'<input type="hidden" name="saveState"  value="'.$env{'form.saveState'}.'" />'."\n".
 	'<input type="hidden" name="command" value="gradingmenu" />'."\n".
 	'<input type="submit" name="submit" value="Grading Menu" />'."\n".
@@ -5279,10 +7183,201 @@ sub savedState {
     return \%savedState;
 }
 
-#--- Displays the main menu page -------
-sub gradingmenu {
+sub grading_menu {
+    my ($request) = @_;
+    my ($symb)=&get_symb($request);
+    if (!$symb) {return '';}
+    my $probTitle = &Apache::lonnet::gettitle($symb);
+    my ($table,undef,$hdgrade) = &showResourceInfo($symb,$probTitle);
+
+    #
+    # Define menu data
+    $env{'form.probTitle'} = &Apache::lonnet::gettitle($symb);
+    my ($table) = &showResourceInfo($symb,$env{'form.probTitle'});
+    $request->print($table);
+    my %fields = ('symb'=>&Apache::lonenc::check_encrypt($symb),
+                  'handgrade'=>$hdgrade,
+                  'probTitle'=>$probTitle,
+                  'command'=>'submit_options',
+                  'saveState'=>"",
+                  'gradingMenu'=>1,
+                  'showgrading'=>"yes");
+    my $url = &Apache::lonhtmlcommon::build_url('grades/',\%fields);
+    my @menu = ({ url => $url,
+                     name => &mt('Manual Grading/View Submissions'),
+                     short_description => 
+    &mt('Start the process of hand grading submissions.'),
+                 });
+    $fields{'command'} = 'csvform';
+    $url = &Apache::lonhtmlcommon::build_url('grades/',\%fields);
+    push (@menu, { url => $url,
+                   name => &mt('Upload Scores'),
+                   short_description => 
+            &mt('Specify a file containing the class scores for current resource.')});
+    $fields{'command'} = 'processclicker';
+    $url = &Apache::lonhtmlcommon::build_url('grades/',\%fields);
+    push (@menu, { url => $url,
+                   name => &mt('Process Clicker'),
+                   short_description => 
+            &mt('Specify a file containing the clicker information for this resource.')});
+    $fields{'command'} = 'scantron_selectphase';
+    $url = &Apache::lonhtmlcommon::build_url('grades/',\%fields);
+    push (@menu, { url => $url,
+                   name => &mt('Grade Scantron Forms'),
+                   short_description => 
+            &mt('')});
+    $fields{'command'} = 'verify';
+    $url = &Apache::lonhtmlcommon::build_url('grades/',\%fields);
+    push (@menu, { url => "",
+                   jscript => ' onClick="javascript:checkChoice2(document.forms.gradingMenu,\'5\',\'verify\')" ',
+                   name => &mt('Verify Receipt'),
+                   short_description => 
+            &mt('')});
+    $fields{'command'} = 'manage';
+    $url = &Apache::lonhtmlcommon::build_url('/adm/helper/resettimes.helper',\%fields);
+    push (@menu, { url => $url,
+                   name => &mt('Manage Access Times'),
+                   short_description => 
+            &mt('')});
+    $fields{'command'} = 'view';
+    $url = &Apache::lonhtmlcommon::build_url('/adm/pickcode',\%fields);
+    push (@menu, { url => $url,
+                   name => &mt('View Saved CODEs'),
+                   short_description => 
+            &mt('')});
+
+    #
+    # Create the menu
+    my $Str;
+    # $Str .= '<h2>'.&mt('Please select a grading task').'</h2>';
+    $Str .= '<form method="post" action="" name="gradingMenu">';
+    $Str .= '<input type="hidden" name="command" value="" />'.
+    	'<input type="hidden" name="symb"        value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n".
+	'<input type="hidden" name="handgrade"   value="'.$hdgrade.'" />'."\n".
+	'<input type="hidden" name="probTitle"   value="'.$probTitle.'" ue="" />'."\n".
+	'<input type="hidden" name="saveState"   value="" />'."\n".
+	'<input type="hidden" name="gradingMenu" value="1" />'."\n".
+	'<input type="hidden" name="showgrading" value="yes" />'."\n";
+
+    foreach my $menudata (@menu) {
+        if ($menudata->{'name'} ne &mt('Verify Receipt')) {
+            $Str .='    <h3><a '.
+                $menudata->{'jscript'}.
+                ' href="'.
+                $menudata->{'url'}.'" >'.
+                $menudata->{'name'}."</a></h3>\n";
+        } else {
+            $Str .='    <h3><a '.
+                $menudata->{'jscript'}.
+                ' href="javascript:checkChoice2(document.forms.gradingMenu,\'5\',\'verify\')" >'.
+                $menudata->{'name'}."</a></h3>\n";
+            $Str .= ('&nbsp;'x8).
+                    ' receipt: '.&Apache::lonnet::recprefix($env{'request.course.id'}).
+                    '-<input type="text" name="receipt" size="4" onChange="javascript:checkReceiptNo(this.form,\'OK\')" />';
+        }
+        $Str .= '    '.('&nbsp;'x8).$menudata->{'short_description'}.
+            "\n";
+    }
+    $Str .="</dl>\n";
+    $Str .="</form>\n";
+    $request->print(<<GRADINGMENUJS);
+<script type="text/javascript" language="javascript">
+    function checkChoice(formname,val,cmdx) {
+	if (val <= 2) {
+	    var cmd = radioSelection(formname.radioChoice);
+	    var cmdsave = cmd;
+	} else {
+	    cmd = cmdx;
+	    cmdsave = 'submission';
+	}
+	formname.command.value = cmd;
+	formname.saveState.value = "saveCmd="+cmdsave+":saveSec="+pullDownSelection(formname.section)+
+	    ":saveSub="+pullDownSelection(formname.submitonly)+":saveStatus="+pullDownSelection(formname.Status);
+	if (val < 5) formname.submit();
+	if (val == 5) {
+	    if (!checkReceiptNo(formname,'notOK')) { return false;}
+	    formname.submit();
+	}
+	if (val < 7) formname.submit();
+    }
+    function checkChoice2(formname,val,cmdx) {
+	if (val <= 2) {
+	    var cmd = radioSelection(formname.radioChoice);
+	    var cmdsave = cmd;
+	} else {
+	    cmd = cmdx;
+	    cmdsave = 'submission';
+	}
+	formname.command.value = cmd;
+	if (val < 5) formname.submit();
+	if (val == 5) {
+	    if (!checkReceiptNo(formname,'notOK')) { return false;}
+	    formname.submit();
+	}
+	if (val < 7) formname.submit();
+    }
+
+    function checkReceiptNo(formname,nospace) {
+	var receiptNo = formname.receipt.value;
+	var checkOpt = false;
+	if (nospace == "OK" && isNaN(receiptNo)) {checkOpt = true;}
+	if (nospace == "notOK" && (isNaN(receiptNo) || receiptNo == "")) {checkOpt = true;}
+	if (checkOpt) {
+	    alert("Please enter a receipt number given by a student in the receipt box.");
+	    formname.receipt.value = "";
+	    formname.receipt.focus();
+	    return false;
+	}
+	return true;
+    }
+</script>
+GRADINGMENUJS
+    &commonJSfunctions($request);
+    my $result='<h3>&nbsp;<span class="LC_info">Manual Grading/View Submission</span></h3>';
+    $result.=$table;
+    my (undef,$sections) = &getclasslist('all','0');
+    my $savedState = &savedState();
+    my $saveCmd = ($$savedState{'saveCmd'} eq '' ? 'submission' : $$savedState{'saveCmd'});
+    my $saveSec = ($$savedState{'saveSec'} eq '' ? 'all' : $$savedState{'saveSec'});
+    my $saveSub = ($$savedState{'saveSub'} eq '' ? 'all' : $$savedState{'saveSub'});
+    my $saveStatus = ($$savedState{'saveStatus'} eq '' ? 'Active' : $$savedState{'saveStatus'});
+
+    $result.='<form action="/adm/grades" method="post" name="gradingMenu">'."\n".
+	'<input type="hidden" name="symb"        value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n".
+	'<input type="hidden" name="handgrade"   value="'.$hdgrade.'" />'."\n".
+	'<input type="hidden" name="probTitle"   value="'.$probTitle.'" ue="" />'."\n".
+	'<input type="hidden" name="saveState"   value="" />'."\n".
+	'<input type="hidden" name="gradingMenu" value="1" />'."\n".
+	'<input type="hidden" name="showgrading" value="yes" />'."\n";
+
+    $result.='<table width="100%" border="0"><tr><td bgcolor=#777777>'."\n".
+	'<table width="100%" border="0"><tr bgcolor="#e6ffff"><td colspan="2">'."\n".
+	'&nbsp;<b>Select a Grading/Viewing Option</b></td></tr>'."\n".
+	'<tr bgcolor="#ffffe6" valign="top"><td>'."\n";
+
+    $result.='<table width="100%" border="0">';
+    $result.='<tr bgcolor="#ffffe6" valign="top">'."\n";
+    $result.='<td><b>'.&mt('Sections').'</b></td>';
+#    $result.='<td>Groups</td>';
+    $result.='<td><b>'.&mt('Access Status').'</td>'."\n";
+    $result.='</tr>';
+    $result.='<tr bgcolor="#ffffe6" valign="top"><td>'."\n".
+	'&nbsp;<select name="section" multiple="multiple" size="3">'."\n";
+    if (ref($sections)) {
+	foreach (sort (@$sections)) {
+	    $result.='<option value="'.$_.'" '.
+		($saveSec eq $_ ? 'selected="selected"':'').'>'.$_.'</option>'."\n";
+	}
+    }
+    $result.= '<option value="all" '.($saveSec eq 'all' ? 'selected="selected"' : ''). '>all</option></select> &nbsp; ';
+    return $Str;    
+}
+
+
+#--- Displays the submissions first page -------
+sub submit_options {
     my ($request) = @_;
-    my ($symb,$url)=&get_symb_and_url($request);
+    my ($symb)=&get_symb($request);
     if (!$symb) {return '';}
     my $probTitle = &Apache::lonnet::gettitle($symb);
 
@@ -5323,8 +7418,8 @@ sub gradingmenu {
 </script>
 GRADINGMENUJS
     &commonJSfunctions($request);
-    my $result='<h3>&nbsp;<font color="#339933">Manual Grading/View Submission</font></h3>';
-    my ($table,undef,$hdgrade) = &showResourceInfo($url,$probTitle);
+    my $result='<h3>&nbsp;<span class="LC_info">Manual Grading/View Submission</span></h3>';
+    my ($table,undef,$hdgrade) = &showResourceInfo($symb,$probTitle);
     $result.=$table;
     my (undef,$sections) = &getclasslist('all','0');
     my $savedState = &savedState();
@@ -5334,8 +7429,7 @@ GRADINGMENUJS
     my $saveStatus = ($$savedState{'saveStatus'} eq '' ? 'Active' : $$savedState{'saveStatus'});
 
     $result.='<form action="/adm/grades" method="post" name="gradingMenu">'."\n".
-	'<input type="hidden" name="symb"        value="'.$symb.'" />'."\n".
-	'<input type="hidden" name="url"         value="'.$url.'" />'."\n".
+	'<input type="hidden" name="symb"        value="'.&Apache::lonenc::check_encrypt($symb).'" />'."\n".
 	'<input type="hidden" name="handgrade"   value="'.$hdgrade.'" />'."\n".
 	'<input type="hidden" name="probTitle"   value="'.$probTitle.'" />'."\n".
 	'<input type="hidden" name="command"     value="" />'."\n".
@@ -5343,89 +7437,607 @@ GRADINGMENUJS
 	'<input type="hidden" name="gradingMenu" value="1" />'."\n".
 	'<input type="hidden" name="showgrading" value="yes" />'."\n";
 
-    $result.='<table width="100%" border=0><tr><td bgcolor=#777777>'."\n".
-	'<table width=100% border=0><tr bgcolor="#e6ffff"><td colspan="2">'."\n".
+    $result.='<table border="0"><tr><td bgcolor=#777777>'."\n".
+	'<table width="100%" border="0"><tr bgcolor="#e6ffff"><td>'."\n".
 	'&nbsp;<b>Select a Grading/Viewing Option</b></td></tr>'."\n".
 	'<tr bgcolor="#ffffe6" valign="top"><td>'."\n";
 
-    $result.='<table width="100%" border=0>';
+    $result.='<table width="100%" border="0">';
+    $result.='<tr bgcolor="#ffffe6" valign="top">'."\n";
+    $result.='<td><b>'.&mt('Sections').'</b></td>';
+    $result.='<td><b>'.&mt('Groups').'</b></td>';
+    $result.='<td><b>'.&mt('Access Status').'</td>'."\n";
+    $result.='</tr>';
     $result.='<tr bgcolor="#ffffe6" valign="top"><td>'."\n".
-	'&nbsp;'.&mt('Select Section').': <select name="section">'."\n";
+	'&nbsp;<select name="section" multiple="multiple" size="3">'."\n";
     if (ref($sections)) {
 	foreach (sort (@$sections)) {
 	    $result.='<option value="'.$_.'" '.
-		($saveSec eq $_ ? 'selected="on"':'').'>'.$_.'</option>'."\n";
+		($saveSec eq $_ ? 'selected="selected"':'').'>'.$_.'</option>'."\n";
 	}
     }
-    $result.= '<option value="all" '.($saveSec eq 'all' ? 'selected="on"' : ''). '>all</option></select> &nbsp; ';
-
-    $result.=&mt('Student Status').':</b>'.&Apache::lonhtmlcommon::StatusOptions($saveStatus,undef,1,undef);
+    $result.= '<option value="all" '.($saveSec eq 'all' ? 'selected="selected"' : ''). '>all</option></select> &nbsp; ';
+    $result.= '</td><td>'."\n";
+    $result.= &Apache::lonstatistics::GroupSelect('group','multiple',3);
+    $result.='</td><td>'."\n";
+    $result.=&Apache::lonhtmlcommon::StatusOptions($saveStatus,undef,3,undef,'mult');
 
     $result.='</td></tr>';
 
-    $result.='<tr bgcolor="#ffffe6"valign="top"><td>'.
+    $result.='<tr bgcolor="#ffffe6"valign="top"><td colspan="3"><label>'.
 	'<input type="radio" name="radioChoice" value="submission" '.
-	($saveCmd eq 'submission' ? 'checked' : '').'> '.'<b>'.&mt('Current Resource').':</b> '.&mt('For one or more students').
-	' <select name="submitonly">'.
+	($saveCmd eq 'submission' ? 'checked="checked"' : '').' /> '.'<b>'.&mt('Current Resource').':</b> '.&mt('For one or more students').
+	'</label> <select name="submitonly">'.
 	'<option value="yes" '.
-	($saveSub eq 'yes' ? 'selected="on"' : '').'>with submissions</option>'.
+	($saveSub eq 'yes' ? 'selected="selected"' : '').'>'.&mt('with submissions').'</option>'.
+	'<option value="queued" '.
+	($saveSub eq 'queued' ? 'selected="selected"' : '').'>'.&mt('in grading queue').'</option>'.
 	'<option value="graded" '.
-	($saveSub eq 'graded' ? 'selected="on"' : '').'>with ungraded submissions</option>'.
+	($saveSub eq 'graded' ? 'selected="selected"' : '').'>'.&mt('with ungraded submissions').'</option>'.
 	'<option value="incorrect" '.
-	($saveSub eq 'incorrect' ? 'selected="on"' : '').'>with incorrect submissions</option>'.
+	($saveSub eq 'incorrect' ? 'selected="selected"' : '').'>'.&mt('with incorrect submissions').'</option>'.
 	'<option value="all" '.
-	($saveSub eq 'all' ? 'selected="on"' : '').'>with any status</option></select></td></tr>'."\n";
+	($saveSub eq 'all' ? 'selected="selected"' : '').'>'.&mt('with any status').'</option></select></td></tr>'."\n";
 
-    $result.='<tr bgcolor="#ffffe6"valign="top"><td>'.
-	'<input type="radio" name="radioChoice" value="viewgrades" '.
-	($saveCmd eq 'viewgrades' ? 'checked' : '').'> '.
-	'<b>Current Resource:</b> For all students in selected section or course</td></tr>'."\n";
-
-    $result.='<tr bgcolor="#ffffe6" valign="top"><td>'.
-	'<input type="radio" name="radioChoice" value="pickStudentPage" '.
-	($saveCmd eq 'pickStudentPage' ? 'checked' : '').'> '.
-	'The <b>complete</b> set/page/sequence: For one student</td></tr>'."\n";
+    $result.='<tr bgcolor="#ffffe6"valign="top"><td colspan="2">'.
+	'<label><input type="radio" name="radioChoice" value="viewgrades" '.
+	($saveCmd eq 'viewgrades' ? 'checked="checked"' : '').' /> '.
+	'<b>Current Resource:</b> For all students in selected section or course</label></td></tr>'."\n";
+
+    $result.='<tr bgcolor="#ffffe6" valign="top"><td colspan="2">'.
+	'<label><input type="radio" name="radioChoice" value="pickStudentPage" '.
+	($saveCmd eq 'pickStudentPage' ? 'checked="checked"' : '').' /> '.
+	'The <b>complete</b> set/page/sequence: For one student</label></td></tr>'."\n";
 
-    $result.='<tr bgcolor="#ffffe6"><td><br />'.
+    $result.='<tr bgcolor="#ffffe6"><td colspan="2"><br />'.
 	'<input type="button" onClick="javascript:checkChoice(this.form,\'2\');" value="Next->" />'.
 	'</td></tr></table>'."\n";
 
-    $result.='</td><td valign="top">';
+    $result.='</td>'; #<td valign="top">';
 
-    $result.='<table width="100%" border=0>';
-    $result.='<tr bgcolor="#ffffe6"><td>'.
-	'<input type="button" onClick="javascript:checkChoice(this.form,\'3\',\'csvform\');" value="'.&mt('Upload').'" />'.
-	' '.&mt('scores from file').' </td></tr>'."\n";
+#    $result.='<table width="100%" border="0">';
+#    $result.='<tr bgcolor="#ffffe6"><td>'.
+#	'<input type="button" onClick="javascript:checkChoice(this.form,\'3\',\'csvform\');" value="'.&mt('Upload').'" />'.
+#	' '.&mt('scores from file').' </td></tr>'."\n";
+#
+#    $result.='<tr bgcolor="#ffffe6"><td>'.
+#        '<input type="button" onClick="javascript:checkChoice(this.form,\'6\',\'processclicker\');" value="'.&mt('Process').'" />'.
+#        ' '.&mt('clicker file').' </td></tr>'."\n";
+#
+#    $result.='<tr bgcolor="#ffffe6"valign="top"><td colspan="2">'.
+#	'<input type="button" onClick="javascript:checkChoice(this.form,\'4\',\'scantron_selectphase\');'.
+#	'" value="'.&mt('Grade').'" /> scantron forms</td></tr>'."\n";
+#
+#    if ((&Apache::lonnet::allowed('mgr',$env{'request.course.id'})) && ($symb)) {
+#	$result.='<tr bgcolor="#ffffe6"valign="top"><td>'.
+#	    '<input type="button" onClick="javascript:checkChoice(this.form,\'5\',\'verify\');" value="'.&mt('Verify').'" />'.
+#	    ' '.&mt('receipt').': '.
+#	    &Apache::lonnet::recprefix($env{'request.course.id'}).
+#	    '-<input type="text" name="receipt" size="4" onChange="javascript:checkReceiptNo(this.form,\'OK\')" />'.
+#	    '</td></tr>'."\n";
+#    } 
+#    $result.='<tr bgcolor="#ffffe6"valign="top"><td colspan="2">'.
+#	'<input type="button" onClick="javascript:this.form.action=\'/adm/helper/resettimes.helper\';this.form.submit();'.
+#	'" value="'.&mt('Manage').'" /> access times.</td></tr>'."\n";
+#    $result.='<tr bgcolor="#ffffe6"valign="top"><td colspan="2">'.
+#	'<input type="button" onClick="javascript:this.form.command.value=\'codelist\';this.form.action=\'/adm/pickcode\';this.form.submit();'.
+#	'" value="'.&mt('View').'" /> saved CODEs.</td></tr>'."\n";
+#
+#    $result.='</table>'."\n".'</td>';
+    $result.= '</tr></table>'."\n".
+	'</td></tr></table></form>'."\n";
+    return $result;
+}
 
-    $result.='<tr bgcolor="#ffffe6"valign="top"><td colspan="2">'.
-	'<input type="button" onClick="javascript:checkChoice(this.form,\'4\',\'scantron_selectphase\');'.
-	'" value="'.&mt('Grade').'" /> scantron forms</td></tr>'."\n";
+sub reset_perm {
+    undef(%perm);
+}
 
-    if ((&Apache::lonnet::allowed('mgr',$env{'request.course.id'})) && ($symb)) {
-	$result.='<tr bgcolor="#ffffe6"valign="top"><td>'.
-	    '<input type="button" onClick="javascript:checkChoice(this.form,\'5\',\'verify\');" value="'.&mt('Verify').'" />'.
-	    ' '.&mt('receipt').': '.
-	    &Apache::lonnet::recprefix($env{'request.course.id'}).
-	    '-<input type="text" name="receipt" size="4" onChange="javascript:checkReceiptNo(this.form,\'OK\')">'.
-	    '</td></tr>'."\n";
-    } 
-    $result.='<tr bgcolor="#ffffe6"valign="top"><td colspan="2">'.
-	'<input type="button" onClick="javascript:this.form.action=\'/adm/helper/resettimes.helper\';this.form.submit();'.
-	'" value="'.&mt('Manage').'" /> access times.</td></tr>'."\n";
-    $result.='<tr bgcolor="#ffffe6"valign="top"><td colspan="2">'.
-	'<input type="button" onClick="javascript:this.form.command.value=\'codelist\';this.form.action=\'/adm/pickcode\';this.form.submit();'.
-	'" value="'.&mt('View').'" /> saved CODEs.</td></tr>'."\n";
+sub init_perm {
+    &reset_perm();
+    foreach my $test_perm ('vgr','mgr','opa') {
+
+	my $scope = $env{'request.course.id'};
+	if (!($perm{$test_perm}=&Apache::lonnet::allowed($test_perm,$scope))) {
+
+	    $scope .= '/'.$env{'request.course.sec'};
+	    if ( $perm{$test_perm}=
+		 &Apache::lonnet::allowed($test_perm,$scope)) {
+		$perm{$test_perm.'_section'}=$env{'request.course.sec'};
+	    } else {
+		delete($perm{$test_perm});
+	    }
+	}
+    }
+}
 
-    $result.='</form></td></tr></table>'."\n".
-	'</td></tr></table>'."\n".
-	'</td></tr></table>'."\n";
+sub gather_clicker_ids {
+    my %clicker_ids;
+
+    my $classlist = &Apache::loncoursedata::get_classlist();
+
+    # Set up a couple variables.
+    my $username_idx = &Apache::loncoursedata::CL_SNAME();
+    my $domain_idx   = &Apache::loncoursedata::CL_SDOM();
+    my $status_idx   = &Apache::loncoursedata::CL_STATUS();
+
+    foreach my $student (keys(%$classlist)) {
+        if ($classlist->{$student}->[$status_idx] ne 'Active') { next; }
+        my $username = $classlist->{$student}->[$username_idx];
+        my $domain   = $classlist->{$student}->[$domain_idx];
+        my $clickers =
+	    (&Apache::lonnet::userenvironment($domain,$username,'clickers'))[1];
+        foreach my $id (split(/\,/,$clickers)) {
+            $id=~s/^[\#0]+//;
+            $id=~s/[\-\:]//g;
+            if (exists($clicker_ids{$id})) {
+		$clicker_ids{$id}.=','.$username.':'.$domain;
+            } else {
+		$clicker_ids{$id}=$username.':'.$domain;
+            }
+        }
+    }
+    return %clicker_ids;
+}
+
+sub gather_adv_clicker_ids {
+    my %clicker_ids;
+    my $cnum=$env{'course.'.$env{'request.course.id'}.'.num'};
+    my $cdom=$env{'course.'.$env{'request.course.id'}.'.domain'};
+    my %coursepersonnel=&Apache::lonnet::get_course_adv_roles($cdom.'/'.$cnum);
+    foreach my $element (sort(keys(%coursepersonnel))) {
+        foreach my $person (split(/\,/,$coursepersonnel{$element})) {
+            my ($puname,$pudom)=split(/\:/,$person);
+            my $clickers =
+		(&Apache::lonnet::userenvironment($pudom,$puname,'clickers'))[1];
+            foreach my $id (split(/\,/,$clickers)) {
+		$id=~s/^[\#0]+//;
+                $id=~s/[\-\:]//g;
+		if (exists($clicker_ids{$id})) {
+		    $clicker_ids{$id}.=','.$puname.':'.$pudom;
+		} else {
+		    $clicker_ids{$id}=$puname.':'.$pudom;
+		}
+            }
+        }
+    }
+    return %clicker_ids;
+}
+
+sub clicker_grading_parameters {
+    return ('gradingmechanism' => 'scalar',
+            'upfiletype' => 'scalar',
+            'specificid' => 'scalar',
+            'pcorrect' => 'scalar',
+            'pincorrect' => 'scalar');
+}
+
+sub process_clicker {
+    my ($r)=@_;
+    my ($symb)=&get_symb($r);
+    if (!$symb) {return '';}
+    my $result=&checkforfile_js();
+    $env{'form.probTitle'} = &Apache::lonnet::gettitle($symb);
+    my ($table) = &showResourceInfo($symb,$env{'form.probTitle'});
+    $result.=$table;
+    $result.='<br /><table width="100%" border="0"><tr><td bgcolor="#777777">'."\n";
+    $result.='<table width="100%" border="0"><tr bgcolor="#e6ffff"><td>'."\n";
+    $result.='&nbsp;<b>'.&mt('Specify a file containing the clicker information for this resource').
+        '.</b></td></tr>'."\n";
+    $result.='<tr bgcolor=#ffffe6><td>'."\n";
+# Attempt to restore parameters from last session, set defaults if not present
+    my %Saveable_Parameters=&clicker_grading_parameters();
+    &Apache::loncommon::restore_course_settings('grades_clicker',
+                                                 \%Saveable_Parameters);
+    if (!$env{'form.pcorrect'}) { $env{'form.pcorrect'}=100; }
+    if (!$env{'form.pincorrect'}) { $env{'form.pincorrect'}=100; }
+    if (!$env{'form.gradingmechanism'}) { $env{'form.gradingmechanism'}='attendance'; }
+    if (!$env{'form.upfiletype'}) { $env{'form.upfiletype'}='iclicker'; }
+
+    my %checked;
+    foreach my $gradingmechanism ('attendance','personnel','specific') {
+       if ($env{'form.gradingmechanism'} eq $gradingmechanism) {
+          $checked{$gradingmechanism}="checked='checked'";
+       }
+    }
+
+    my $upload=&mt("Upload File");
+    my $type=&mt("Type");
+    my $attendance=&mt("Award points just for participation");
+    my $personnel=&mt("Correctness determined from response by course personnel");
+    my $specific=&mt("Correctness determined from response with clicker ID(s)"); 
+    my $pcorrect=&mt("Percentage points for correct solution");
+    my $pincorrect=&mt("Percentage points for incorrect solution");
+    my $selectform=&Apache::loncommon::select_form($env{'form.upfiletype'},'upfiletype',
+						   ('iclicker' => 'i>clicker',
+                                                    'interwrite' => 'interwrite PRS'));
+    $symb = &Apache::lonenc::check_encrypt($symb);
+    $result.=<<ENDUPFORM;
+<script type="text/javascript">
+function sanitycheck() {
+// Accept only integer percentages
+   document.forms.gradesupload.pcorrect.value=Math.round(document.forms.gradesupload.pcorrect.value);
+   document.forms.gradesupload.pincorrect.value=Math.round(document.forms.gradesupload.pincorrect.value);
+// Find out grading choice
+   for (i=0; i<document.forms.gradesupload.gradingmechanism.length; i++) {
+      if (document.forms.gradesupload.gradingmechanism[i].checked) {
+         gradingchoice=document.forms.gradesupload.gradingmechanism[i].value;
+      }
+   }
+// By default, new choice equals user selection
+   newgradingchoice=gradingchoice;
+// Not good to give more points for false answers than correct ones
+   if (Math.round(document.forms.gradesupload.pcorrect.value)<Math.round(document.forms.gradesupload.pincorrect.value)) {
+      document.forms.gradesupload.pcorrect.value=document.forms.gradesupload.pincorrect.value;
+   }
+// If new choice is attendance only, and old choice was correctness-based, restore defaults
+   if ((gradingchoice=='attendance') && (document.forms.gradesupload.waschecked.value!='attendance')) {
+      document.forms.gradesupload.pcorrect.value=100;
+      document.forms.gradesupload.pincorrect.value=100;
+   }
+// If the values are different, cannot be attendance only
+   if ((Math.round(document.forms.gradesupload.pcorrect.value)!=Math.round(document.forms.gradesupload.pincorrect.value)) &&
+       (gradingchoice=='attendance')) {
+       newgradingchoice='personnel';
+   }
+// Change grading choice to new one
+   for (i=0; i<document.forms.gradesupload.gradingmechanism.length; i++) {
+      if (document.forms.gradesupload.gradingmechanism[i].value==newgradingchoice) {
+         document.forms.gradesupload.gradingmechanism[i].checked=true;
+      } else {
+         document.forms.gradesupload.gradingmechanism[i].checked=false;
+      }
+   }
+// Remember the old state
+   document.forms.gradesupload.waschecked.value=newgradingchoice;
+}
+</script>
+<form method="post" enctype="multipart/form-data" action="/adm/grades" name="gradesupload">
+<input type="hidden" name="symb" value="$symb" />
+<input type="hidden" name="command" value="processclickerfile" />
+<input type="hidden" name="probTitle" value="$env{'form.probTitle'}" />
+<input type="hidden" name="saveState"  value="$env{'form.saveState'}" />
+<input type="file" name="upfile" size="50" />
+<br /><label>$type: $selectform</label>
+<br /><label><input type="radio" name="gradingmechanism" value="attendance" $checked{'attendance'} onClick="sanitycheck()" />$attendance </label>
+<br /><label><input type="radio" name="gradingmechanism" value="personnel" $checked{'personnel'} onClick="sanitycheck()" />$personnel</label>
+<br /><label><input type="radio" name="gradingmechanism" value="specific" $checked{'specific'} onClick="sanitycheck()" />$specific </label>
+<input type="text" name="specificid" value="$env{'form.specificid'}" size="20" />
+<input type="hidden" name="waschecked" value="$env{'form.gradingmechanism'}" />
+<br /><label>$pcorrect: <input type="text" name="pcorrect" size="4" value="$env{'form.pcorrect'}" onChange="sanitycheck()" /></label>
+<br /><label>$pincorrect: <input type="text" name="pincorrect" size="4" value="$env{'form.pincorrect'}" onChange="sanitycheck()" /></label>
+<br /><input type="button" onClick="javascript:checkUpload(this.form);" value="$upload" />
+</form>
+ENDUPFORM
+    $result.='</td></tr></table>'."\n".
+             '</td></tr></table><br /><br />'."\n";
+    $result.=&show_grading_menu_form($symb);
     return $result;
 }
 
+sub process_clicker_file {
+    my ($r)=@_;
+    my ($symb)=&get_symb($r);
+    if (!$symb) {return '';}
+
+    my %Saveable_Parameters=&clicker_grading_parameters();
+    &Apache::loncommon::store_course_settings('grades_clicker',
+                                              \%Saveable_Parameters);
+
+    my ($result) = &showResourceInfo($symb,$env{'form.probTitle'});
+    if (($env{'form.gradingmechanism'} eq 'specific') && ($env{'form.specificid'}!~/\w/)) {
+	$result.='<span class="LC_error">'.&mt('You need to specify a clicker ID for the correct answer').'</span>';
+	return $result.&show_grading_menu_form($symb);
+    }
+    my %clicker_ids=&gather_clicker_ids();
+    my %correct_ids;
+    if ($env{'form.gradingmechanism'} eq 'personnel') {
+	%correct_ids=&gather_adv_clicker_ids();
+    }
+    if ($env{'form.gradingmechanism'} eq 'specific') {
+	foreach my $correct_id (split(/[\s\,]/,$env{'form.specificid'})) {;
+	   $correct_id=~tr/a-z/A-Z/;
+	   $correct_id=~s/\s//gs;
+	   $correct_id=~s/^[\#0]+//;
+           $correct_id=~s/[\-\:]//g;
+           if ($correct_id) {
+	      $correct_ids{$correct_id}='specified';
+           }
+        }
+    }
+    if ($env{'form.gradingmechanism'} eq 'attendance') {
+	$result.=&mt('Score based on attendance only');
+    } else {
+	my $number=0;
+	$result.='<p><b>'.&mt('Correctness determined by the following IDs').'</b>';
+	foreach my $id (sort(keys(%correct_ids))) {
+	    $result.='<br /><tt>'.$id.'</tt> - ';
+	    if ($correct_ids{$id} eq 'specified') {
+		$result.=&mt('specified');
+	    } else {
+		my ($uname,$udom)=split(/\:/,$correct_ids{$id});
+		$result.=&Apache::loncommon::plainname($uname,$udom);
+	    }
+	    $number++;
+	}
+        $result.="</p>\n";
+	if ($number==0) {
+	    $result.='<span class="LC_error">'.&mt('No IDs found to determine correct answer').'</span>';
+	    return $result.&show_grading_menu_form($symb);
+	}
+    }
+    if (length($env{'form.upfile'}) < 2) {
+        $result.=&mt('[_1] Error: [_2] The file you attempted to upload, [_3] contained no information. Please check that you entered the correct filename.',
+		     '<span class="LC_error">',
+		     '</span>',
+		     '<span class="LC_filename">'.&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"').'</span>');
+        return $result.&show_grading_menu_form($symb);
+    }
+
+# Were able to get all the info needed, now analyze the file
+
+    $result.=&Apache::loncommon::studentbrowser_javascript();
+    $symb = &Apache::lonenc::check_encrypt($symb);
+    my $heading=&mt('Scanning clicker file');
+    $result.=(<<ENDHEADER);
+<br /><table width="100%" border="0"><tr><td bgcolor="#777777">
+<table width="100%" border="0"><tr bgcolor="#e6ffff"><td>
+<b>$heading</b></td></tr><tr bgcolor=#ffffe6><td>
+<form method="post" action="/adm/grades" name="clickeranalysis">
+<input type="hidden" name="symb" value="$symb" />
+<input type="hidden" name="command" value="assignclickergrades" />
+<input type="hidden" name="probTitle" value="$env{'form.probTitle'}" />
+<input type="hidden" name="saveState"  value="$env{'form.saveState'}" />
+<input type="hidden" name="gradingmechanism" value="$env{'form.gradingmechanism'}" />
+<input type="hidden" name="pcorrect" value="$env{'form.pcorrect'}" />
+<input type="hidden" name="pincorrect" value="$env{'form.pincorrect'}" />
+ENDHEADER
+    my %responses;
+    my @questiontitles;
+    my $errormsg='';
+    my $number=0;
+    if ($env{'form.upfiletype'} eq 'iclicker') {
+	($errormsg,$number)=&iclicker_eval(\@questiontitles,\%responses);
+    }
+    if ($env{'form.upfiletype'} eq 'interwrite') {
+        ($errormsg,$number)=&interwrite_eval(\@questiontitles,\%responses);
+    }
+    $result.='<br />'.&mt('Found [_1] question(s)',$number).'<br />'.
+             '<input type="hidden" name="number" value="'.$number.'" />'.
+             &mt('Awarding [_1] percent for corrion(s)',$number).'<br />'.
+             '<input type="hidden" name="number" value="'.$number.'" />'.
+             &mt('Awarding [_1] percent for correct and [_2] percent for incorrect responses',
+                 $env{'form.pcorrect'},$env{'form.pincorrect'}).
+             '<br />';
+# Remember Question Titles
+# FIXME: Possibly need delimiter other than ":"
+    for (my $i=0;$i<$number;$i++) {
+        $result.='<input type="hidden" name="question:'.$i.'" value="'.
+                 &HTML::Entities::encode($questiontitles[$i],'"&<>').'" />';
+    }
+    my $correct_count=0;
+    my $student_count=0;
+    my $unknown_count=0;
+# Match answers with usernames
+# FIXME: Possibly need delimiter other than ":"
+    foreach my $id (keys(%responses)) {
+       if ($correct_ids{$id}) {
+          $result.="\n".'<input type="hidden" name="correct:'.$correct_count.':'.$correct_ids{$id}.'" value="'.$responses{$id}.'" />';
+          $correct_count++;
+       } elsif ($clicker_ids{$id}) {
+          if ($clicker_ids{$id}=~/\,/) {
+# More than one user with the same clicker!
+             $result.="\n<hr />".&mt('Clicker registered more than once').": <tt>".$id."</tt><br />";
+             $result.="\n".'<input type="hidden" name="unknown:'.$id.'" value="'.$responses{$id}.'" />'.
+                           "<select name='multi".$id."'>";
+             foreach my $reguser (sort(split(/\,/,$clicker_ids{$id}))) {
+                 $result.="<option value='".$reguser."'>".&Apache::loncommon::plainname(split(/\:/,$reguser)).' ('.$reguser.')</option>';
+             }
+             $result.='</select>';
+             $unknown_count++;
+          } else {
+# Good: found one and only one user with the right clicker
+             $result.="\n".'<input type="hidden" name="student:'.$clicker_ids{$id}.'" value="'.$responses{$id}.'" />';
+             $student_count++;
+          }
+       } else {
+          $result.="\n<hr />".&mt('Unregistered Clicker')." <tt>".$id."</tt><br />";
+          $result.="\n".'<input type="hidden" name="unknown:'.$id.'" value="'.$responses{$id}.'" />'.
+                   "\n".&mt("Username").": <input type='text' name='uname".$id."' />&nbsp;".
+                   "\n".&mt("Domain").": ".
+                   &Apache::loncommon::select_dom_form($env{'course.'.$env{'request.course.id'}.'.domain'},'udom'.$id).'&nbsp;'.
+                   &Apache::loncommon::selectstudent_link('clickeranalysis','uname'.$id,'udom'.$id);
+          $unknown_count++;
+       }
+    }
+    $result.='<hr />'.
+             &mt('Found [_1] registered and [_2] unregistered clickers.',$student_count,$unknown_count);
+    if ($env{'form.gradingmechanism'} ne 'attendance') {
+       if ($correct_count==0) {
+          $errormsg.="Found no correct answers answers for grading!";
+       } elsif ($correct_count>1) {
+          $result.='<br /><span class="LC_warning">'.&mt("Found [_1] entries for grading!",$correct_count).'</span>';
+       }
+    }
+    if ($number<1) {
+       $errormsg.="Found no questions.";
+    }
+    if ($errormsg) {
+       $result.='<br /><span class="LC_error">'.&mt($errormsg).'</span>';
+    } else {
+       $result.='<br /><input type="submit" name="finalize" value="'.&mt('Finalize Grading').'" />';
+    }
+    $result.='</form></td></tr></table>'."\n".
+             '</td></tr></table><br /><br />'."\n";
+    return $result.&show_grading_menu_form($symb);
+}
+
+sub iclicker_eval {
+    my ($questiontitles,$responses)=@_;
+    my $number=0;
+    my $errormsg='';
+    foreach my $line (split(/[\n\r]/,$env{'form.upfile'})) {
+        my %components=&Apache::loncommon::record_sep($line);
+        my @entries=map {$components{$_}} (sort(keys(%components)));
+	if ($entries[0] eq 'Question') {
+	    for (my $i=3;$i<$#entries;$i+=6) {
+		$$questiontitles[$number]=$entries[$i];
+		$number++;
+	    }
+	}
+	if ($entries[0]=~/^\#/) {
+	    my $id=$entries[0];
+	    my @idresponses;
+	    $id=~s/^[\#0]+//;
+	    for (my $i=0;$i<$number;$i++) {
+		my $idx=3+$i*6;
+		push(@idresponses,$entries[$idx]);
+	    }
+	    $$responses{$id}=join(',',@idresponses);
+	}
+    }
+    return ($errormsg,$number);
+}
+
+sub interwrite_eval {
+    my ($questiontitles,$responses)=@_;
+    my $number=0;
+    my $errormsg='';
+    my $skipline=1;
+    my $questionnumber=0;
+    my %idresponses=();
+    foreach my $line (split(/[\n\r]/,$env{'form.upfile'})) {
+        my %components=&Apache::loncommon::record_sep($line);
+        my @entries=map {$components{$_}} (sort(keys(%components)));
+        if ($entries[1] eq 'Time') { $skipline=0; next; }
+        if ($entries[1] eq 'Response') { $skipline=1; }
+        next if $skipline;
+        if ($entries[0]!=$questionnumber) {
+           $questionnumber=$entries[0];
+           $$questiontitles[$number]=&mt('Question [_1]',$questionnumber);
+           $number++;
+        }
+        my $id=$entries[4];
+        $id=~s/^[\#0]+//;
+        $id=~s/^v\d*\://i;
+        $id=~s/[\-\:]//g;
+        $idresponses{$id}[$number]=$entries[6];
+    }
+    foreach my $id (keys %idresponses) {
+       $$responses{$id}=join(',',@{$idresponses{$id}});
+       $$responses{$id}=~s/^\s*\,//;
+    }
+    return ($errormsg,$number);
+}
+
+sub assign_clicker_grades {
+    my ($r)=@_;
+    my ($symb)=&get_symb($r);
+    if (!$symb) {return '';}
+# See which part we are saving to
+    my ($partlist,$handgrade,$responseType) = &response_type($symb);
+# FIXME: This should probably look for the first handgradeable part
+    my $part=$$partlist[0];
+# Start screen output
+    my ($result) = &showResourceInfo($symb,$env{'form.probTitle'});
+
+    my $heading=&mt('Assigning grades based on clicker file');
+    $result.=(<<ENDHEADER);
+<br /><table width="100%" border="0"><tr><td bgcolor="#777777">
+<table width="100%" border="0"><tr bgcolor="#e6ffff"><td>
+<b>$heading</b></td></tr><tr bgcolor=#ffffe6><td>
+ENDHEADER
+# Get correct result
+# FIXME: Possibly need delimiter other than ":"
+    my @correct=();
+    my $gradingmechanism=$env{'form.gradingmechanism'};
+    my $number=$env{'form.number'};
+    if ($gradingmechanism ne 'attendance') {
+       foreach my $key (keys(%env)) {
+          if ($key=~/^form\.correct\:/) {
+             my @input=split(/\,/,$env{$key});
+             for (my $i=0;$i<=$#input;$i++) {
+                 if (($correct[$i]) && ($input[$i]) &&
+                     ($correct[$i] ne $input[$i])) {
+                    $result.='<br /><span class="LC_warning">'.
+                             &mt('More than one correct result given for question "[_1]": [_2] versus [_3].',
+                                 $env{'form.question:'.$i},$correct[$i],$input[$i]).'</span>';
+                 } elsif ($input[$i]) {
+                    $correct[$i]=$input[$i];
+                 }
+             }
+          }
+       }
+       for (my $i=0;$i<$number;$i++) {
+          if (!$correct[$i]) {
+             $result.='<br /><span class="LC_error">'.
+                      &mt('No correct result given for question "[_1]"!',
+                          $env{'form.question:'.$i}).'</span>';
+          }
+       }
+       $result.='<br />'.&mt("Correct answer: [_1]",join(', ',map { ($_?$_:'-') } @correct));
+    }
+# Start grading
+    my $pcorrect=$env{'form.pcorrect'};
+    my $pincorrect=$env{'form.pincorrect'};
+    my $storecount=0;
+    foreach my $key (keys(%env)) {
+       my $user='';
+       if ($key=~/^form\.student\:(.*)$/) {
+          $user=$1;
+       }
+       if ($key=~/^form\.unknown\:(.*)$/) {
+          my $id=$1;
+          if (($env{'form.uname'.$id}) && ($env{'form.udom'.$id})) {
+             $user=$env{'form.uname'.$id}.':'.$env{'form.udom'.$id};
+          } elsif ($env{'form.multi'.$id}) {
+             $user=$env{'form.multi'.$id};
+          }
+       }
+       if ($user) { 
+          my @answer=split(/\,/,$env{$key});
+          my $sum=0;
+          for (my $i=0;$i<$number;$i++) {
+             if ($answer[$i]) {
+                if ($gradingmechanism eq 'attendance') {
+                   $sum+=$pcorrect;
+                } else {
+                   if ($answer[$i] eq $correct[$i]) {
+                      $sum+=$pcorrect;
+                   } else {
+                      $sum+=$pincorrect;
+                   }
+                }
+             }
+          }
+          my $ave=$sum/(100*$number);
+# Store
+          my ($username,$domain)=split(/\:/,$user);
+          my %grades=();
+          $grades{"resource.$part.solved"}='correct_by_override';
+          $grades{"resource.$part.awarded"}=$ave;
+          $grades{"resource.regrader"}="$env{'user.name'}:$env{'user.domain'}";
+          my $returncode=&Apache::lonnet::cstore(\%grades,$symb,
+                                                 $env{'request.course.id'},
+                                                 $domain,$username);
+          if ($returncode ne 'ok') {
+             $result.="<br /><span class=\"LC_error\">Failed to save student $username:$domain. Message when trying to save was ($returncode)</span>";
+          } else {
+             $storecount++;
+          }
+       }
+    }
+# We are done
+    $result.='<br />'.&mt('Successfully stored grades for [_1] student(s).',$storecount).
+             '</td></tr></table>'."\n".
+             '</td></tr></table><br /><br />'."\n";
+    return $result.&show_grading_menu_form($symb);
+}
+
 sub handler {
     my $request=$_[0];
 
-    undef(%perm);
+    &reset_caches();
     if ($env{'browser.mathml'}) {
 	&Apache::loncommon::content_type($request,'text/xml');
     } else {
@@ -5434,20 +8046,17 @@ sub handler {
     $request->send_http_header;
     return '' if $request->header_only;
     &Apache::loncommon::get_unprocessed_cgi($ENV{'QUERY_STRING'});
-    my $url=$env{'form.url'};
-    my $symb=$env{'form.symb'};
+    my $symb=&get_symb($request,1);
     my @commands=&Apache::loncommon::get_env_multiple('form.command');
     my $command=$commands[0];
+
     if ($#commands > 0) {
 	&Apache::lonnet::logthis("grades got multiple commands ".join(':',@commands));
     }
-    if (!$url) {
-	my ($temp1,$temp2);
-	($temp1,$temp2,$env{'form.url'})=&Apache::lonnet::decode_symb($symb);
-	$url = $env{'form.url'};
-    }
-    &send_header($request);
-    if ($url eq '' && $symb eq '' && $command eq '') {
+
+
+    $request->print(&Apache::loncommon::start_page('Grading'));
+    if ($symb eq '' && $command eq '') {
 	if ($env{'user.adv'}) {
 	    if (($env{'form.codeone'}) && ($env{'form.codetwo'}) &&
 		($env{'form.codethree'})) {
@@ -5474,20 +8083,7 @@ sub handler {
 	    }
 	}
     } else {
-	if (!($perm{'vgr'}=&Apache::lonnet::allowed('vgr',$env{'request.course.id'}))) {
-	    if ($perm{'vgr'}=&Apache::lonnet::allowed('vgr',$env{'request.course.id'}.'/'.$env{'request.course.sec'})) {
-		$perm{'vgr_section'}=$env{'request.course.sec'};
-	    } else {
-		delete($perm{'vgr'});
-	    }
-	}
-	if (!($perm{'mgr'}=&Apache::lonnet::allowed('mgr',$env{'request.course.id'}))) {
-	    if ($perm{'mgr'}=&Apache::lonnet::allowed('mgr',$env{'request.course.id'}.'/'.$env{'request.course.sec'})) {
-		$perm{'mgr_section'}=$env{'request.course.sec'};
-	    } else {
-		delete($perm{'mgr'});
-	    }
-	}
+	&init_perm();
 	if ($command eq 'submission' && $perm{'vgr'}) {
 	    ($env{'form.student'} eq '' ? &listStudents($request) : &submission($request,0,0));
 	} elsif ($command eq 'pickStudentPage' && $perm{'vgr'}) {
@@ -5499,7 +8095,9 @@ sub handler {
 	} elsif ($command eq 'processGroup' && $perm{'vgr'}) {
 	    &processGroup($request);
 	} elsif ($command eq 'gradingmenu' && $perm{'vgr'}) {
-	    $request->print(&gradingmenu($request));
+	    $request->print(&grading_menu($request));
+	} elsif ($command eq 'submit_options' && $perm{'vgr'}) {
+	    $request->print(&submit_options($request));
 	} elsif ($command eq 'viewgrades' && $perm{'vgr'}) {
 	    $request->print(&viewgrades($request));
 	} elsif ($command eq 'handgrade' && $perm{'mgr'}) {
@@ -5508,6 +8106,12 @@ sub handler {
 	    $request->print(&editgrades($request));
 	} elsif ($command eq 'verify' && $perm{'vgr'}) {
 	    $request->print(&verifyreceipt($request));
+        } elsif ($command eq 'processclicker' && $perm{'mgr'}) {
+            $request->print(&process_clicker($request));
+        } elsif ($command eq 'processclickerfile' && $perm{'mgr'}) {
+            $request->print(&process_clicker_file($request));
+        } elsif ($command eq 'assignclickergrades' && $perm{'mgr'}) {
+            $request->print(&assign_clicker_grades($request));
 	} elsif ($command eq 'csvform' && $perm{'mgr'}) {
 	    $request->print(&upcsvScores_form($request));
 	} elsif ($command eq 'csvupload' && $perm{'mgr'}) {
@@ -5528,6 +8132,7 @@ sub handler {
 	} elsif ($command eq 'csvuploadassign' && $perm{'mgr'} ) {
 	    $request->print(&csvuploadassign($request));
 	} elsif ($command eq 'scantron_selectphase' && $perm{'mgr'}) {
+	    &Apache::lonnet::logthis("Selecting pyhase");
 	    $request->print(&scantron_selectphase($request));
  	} elsif ($command eq 'scantron_warning' && $perm{'mgr'}) {
  	    $request->print(&scantron_do_warning($request));
@@ -5550,27 +8155,11 @@ sub handler {
 	    $request->print("Access Denied ($command)");
 	}
     }
-    &send_footer($request);
+    $request->print(&Apache::loncommon::end_page());
+    &reset_caches();
     return '';
 }
 
-sub send_header {
-    my ($request)= @_;
-    $request->print(&Apache::lontexconvert::header());
-#  $request->print("
-#<script>
-#remotewindow=open('','homeworkremote');
-#remotewindow.close();
-#</script>"); 
-    $request->print(&Apache::loncommon::bodytag('Grading'));
-    $request->rflush();
-}
-
-sub send_footer {
-    my ($request)= @_;
-    $request->print('</body></html>');
-}
-
 1;
 
 __END__;