--- loncom/homework/grades.pm	2013/12/14 00:22:27	1.596.2.12.2.24
+++ loncom/homework/grades.pm	2016/10/14 17:33:34	1.596.2.12.2.37
@@ -1,7 +1,7 @@
 # The LearningOnline Network with CAPA
 # The LON-CAPA Grading handler
 #
-# $Id: grades.pm,v 1.596.2.12.2.24 2013/12/14 00:22:27 raeburn Exp $
+# $Id: grades.pm,v 1.596.2.12.2.37 2016/10/14 17:33:34 raeburn Exp $
 #
 # Copyright Michigan State University Board of Trustees
 #
@@ -391,6 +391,8 @@ sub cleanRecord {
     my $grayFont = '<span class="LC_internal_info">';
     if ($response =~ /^(option|rank)$/) {
 	my %answer=&Apache::lonnet::str2hash($answer);
+        my @answer = %answer;
+        %answer = map {&HTML::Entities::encode($_, '"<>&')} @answer;
 	my %grading=&Apache::lonnet::str2hash($record->{$version."resource.$partid.$respid.submissiongrading"});
 	my ($toprow,$bottomrow);
 	foreach my $foil (@$order) {
@@ -407,6 +409,8 @@ sub cleanRecord {
 	    $bottomrow.'</tr></table></blockquote>';
     } elsif ($response eq 'match') {
 	my %answer=&Apache::lonnet::str2hash($answer);
+        my @answer = %answer;
+        %answer = map {&HTML::Entities::encode($_, '"<>&')} @answer;
 	my %grading=&Apache::lonnet::str2hash($record->{$version."resource.$partid.$respid.submissiongrading"});
 	my @items=&Apache::lonnet::str2array($record->{$version."resource.$partid.$respid.submissionitems"});
 	my ($toprow,$middlerow,$bottomrow);
@@ -461,10 +465,10 @@ sub cleanRecord {
 	    $env{'form.kwstyle'}  = $keyhash{$loginuser.'_kwstyle'} ne '' ? $keyhash{$loginuser.'_kwstyle'} : '';
 	    $env{'form.'.$symb} = 1; # so that we don't have to read it from disk for multiple sub of the same prob.
 	}
-	$answer =~ s-\n-<br />-g;
 	return '<br /><br /><blockquote><tt>'.&keywords_highlight($answer).'</tt></blockquote>';
     } elsif ( $response eq 'organic') {
-	my $result='Smile representation: "<tt>'.$answer.'</tt>"';
+        my $result=&mt('Smile representation: [_1]',
+                           '"<tt>'.&HTML::Entities::encode($answer, '"<>&').'</tt>"');
 	my $jme=$record->{$version."resource.$partid.$respid.molecule"};
 	$result.=&Apache::chemresponse::jme_img($jme,$answer,400);
 	return $result;
@@ -498,12 +502,14 @@ sub cleanRecord {
 	    $result.='</ul>';
 	    return $result;
 	}
-    } elsif ( $response =~ m/(?:numerical|formula)/) {
+    } elsif ( $response =~ m/(?:numerical|formula|custom)/) {
+        # Respect multiple input fields, see Bug #5409 
 	$answer = 
 	    &Apache::loncommon::format_previous_attempt_value('submission',
 							      $answer);
+        return $answer;
     }
-    return $answer;
+    return &HTML::Entities::encode($answer, '"<>&');
 }
 
 #-- A couple of common js functions
@@ -908,10 +914,11 @@ sub listStudents {
 
     my ($table,undef,$hdgrade,$partlist,$handgrade) = &showResourceInfo($symb,$env{'form.probTitle'},($env{'form.showgrading'} eq 'yes'));
 
-    my %lt = &Apache::lonlocal::texthash (
+    my %js_lt = &Apache::lonlocal::texthash (
 		'multiple' => 'Please select a student or group of students before clicking on the Next button.',
 		'single'   => 'Please select the student before clicking on the Next button.',
 	     );
+    &js_escape(\%js_lt);
     $request->print(<<LISTJAVASCRIPT);
 <script type="text/javascript" language="javascript">
     function checkSelect(checkBox) {
@@ -923,12 +930,12 @@ sub listStudents {
 		    ctr++;
 		}
 	    }
-	    sense = '$lt{'multiple'}';
+	    sense = '$js_lt{'multiple'}';
 	} else {
 	    if (checkBox.checked) {
 		ctr = 1;
 	    }
-	    sense = '$lt{'single'}';
+	    sense = '$js_lt{'single'}';
 	}
 	if (ctr == 0) {
 	    alert(sense);
@@ -1247,7 +1254,8 @@ sub processGroup {
 #--- Javascript to handle the submission page functionality ---
 sub sub_page_js {
     my $request = shift;
-	    my $alertmsg = &mt('A number equal or greater than 0 is expected. Entered value = ');
+    my $alertmsg = &mt('A number equal or greater than 0 is expected. Entered value = ');
+    &js_escape(\$alertmsg);
     $request->print(<<SUBJAVASCRIPT);
 <script type="text/javascript" language="javascript">
     function updateRadio(formname,id,weight) {
@@ -1366,10 +1374,8 @@ sub sub_page_js {
 			    }
 			}
 		    }
-		    
 		}
 	    }
-	    
 	}
 	if (val == "Grade Student") {
 	    formname.showgrading.value = "yes";
@@ -1503,10 +1509,21 @@ INNERJS
 
     my $docopen=&Apache::lonhtmlcommon::javascript_docopen();
     $docopen=~s/^document\.//;
-    my %lt = &Apache::lonlocal::texthash(
+    my %js_lt = &Apache::lonlocal::texthash(
                 keyw => 'Keywords list, separated by a space. Add/delete to list if desired.',
                 plse => 'Please select a word or group of words from document and then click this link.',
                 adds => 'Add selection to keyword list? Edit if desired.',
+                col1 => 'red',
+                col2 => 'green',
+                col3 => 'blue',
+                siz1 => 'normal',
+                siz2 => '+1',
+                siz3 => '+2',
+                sty1 => 'normal',
+                sty2 => 'italic',
+                sty3 => 'bold',
+             );
+    my %html_js_lt = &Apache::lonlocal::texthash(
                 comp => 'Compose Message for: ',
                 incl => 'Include',
                 type => 'Type',
@@ -1520,12 +1537,15 @@ INNERJS
                 font => 'Font Size',
                 fnst => 'Font Style',
              );
+    &js_escape(\%js_lt);
+    &html_escape(\%html_js_lt);
+    &js_escape(\%html_js_lt);
     $request->print(<<SUBJAVASCRIPT);
 <script type="text/javascript" language="javascript">
 
 //===================== Show list of keywords ====================
   function keywords(formname) {
-    var nret = prompt("$lt{'keyw'}",formname.keywords.value);
+    var nret = prompt("$js_lt{'keyw'}",formname.keywords.value);
     if (nret==null) return;
     formname.keywords.value = nret;
 
@@ -1552,10 +1572,10 @@ INNERJS
     else return;
     var cleantxt = txt.replace(new RegExp('([\\f\\n\\r\\t\\v ])+', 'g')," ");
     if (cleantxt=="") {
-	alert("$lt{'plse'}");
+	alert("$js_lt{'plse'}");
 	return;
     }
-    var nret = prompt("$lt{'adds'}",cleantxt);
+    var nret = prompt("$js_lt{'adds'}",cleantxt);
     if (nret==null) return;
     document.SCORE.keywords.value = document.SCORE.keywords.value+" "+nret;
     if (document.SCORE.keywords.value != "") {
@@ -1635,16 +1655,16 @@ INNERJS
 
     pDoc.write("<form action=\\"inactive\\" name=\\"msgcenter\\">");
     pDoc.write("<input value=\\""+usrctr+"\\" name=\\"usrctr\\" type=\\"hidden\\">");
-    pDoc.write("<h3><span class=\\"LC_info\\">&nbsp;$lt{'comp'}\"+fullname+\"<\\/span><\\/h3><br /><br />");
+    pDoc.write("<h3><span class=\\"LC_info\\">&nbsp;$html_js_lt{'comp'}\"+fullname+\"<\\/span><\\/h3><br /><br />");
 
     pDoc.write('<table border="0" width="100%"><tr><td bgcolor="#777777">');
     pDoc.write('<table border="0" width="100%"><tr bgcolor="#DDFFFF">');
-    pDoc.write("<td><b>$lt{'type'}<\\/b><\\/td><td><b>$lt{'incl'}<\\/b><\\/td><td><b>$lt{'mesa'}<\\/td><\\/tr>");
+    pDoc.write("<td><b>$html_js_lt{'type'}<\\/b><\\/td><td><b>$html_js_lt{'incl'}<\\/b><\\/td><td><b>$html_js_lt{'mesa'}<\\/td><\\/tr>");
 }
     function displaySubject(msg,shwsel) {
     pDoc = pWin.document;
     pDoc.write("<tr bgcolor=\\"#ffffdd\\">");
-    pDoc.write("<td>$lt{'subj'}<\\/td>");
+    pDoc.write("<td>$html_js_lt{'subj'}<\\/td>");
     pDoc.write("<td align=\\"center\\"><input name=\\"subchk\\" type=\\"checkbox\\"" +shwsel+"><\\/td>");
     pDoc.write("<td><input name=\\"msgsub\\" type=\\"text\\" value=\\""+msg+"\\"size=\\"60\\" maxlength=\\"80\\"><\\/td><\\/tr>");
 }
@@ -1660,7 +1680,7 @@ INNERJS
   function newMsg(newmsg,shwsel) {
     pDoc = pWin.document;
     pDoc.write("<tr bgcolor=\\"#ffffdd\\">");
-    pDoc.write("<td align=\\"center\\">$lt{'new'}<\\/td>");
+    pDoc.write("<td align=\\"center\\">$html_js_lt{'new'}<\\/td>");
     pDoc.write("<td align=\\"center\\"><input name=\\"newmsgchk\\" type=\\"checkbox\\"" +shwsel+"><\\/td>");
     pDoc.write("<td><textarea name=\\"newmsg\\" cols=\\"60\\" rows=\\"3\\" onchange=\\"javascript:this.form.newmsgchk.checked=true\\" >"+newmsg+"<\\/textarea><\\/td><\\/tr>");
 }
@@ -1669,8 +1689,8 @@ INNERJS
     pDoc = pWin.document;
     pDoc.write("<\\/table>");
     pDoc.write("<\\/td><\\/tr><\\/table>&nbsp;");
-    pDoc.write("<input type=\\"button\\" value=\\"$lt{'save'}\\" onclick=\\"javascript:checkInput()\\">&nbsp;&nbsp;");
-    pDoc.write("<input type=\\"button\\" value=\\"$lt{'canc'}\\" onclick=\\"self.close()\\"><br /><br />");
+    pDoc.write("<input type=\\"button\\" value=\\"$html_js_lt{'save'}\\" onclick=\\"javascript:checkInput()\\">&nbsp;&nbsp;");
+    pDoc.write("<input type=\\"button\\" value=\\"$html_js_lt{'canc'}\\" onclick=\\"self.close()\\"><br /><br />");
     pDoc.write("<\\/form>");
     pDoc.write('$end_page_msg_central');
     pDoc.close();
@@ -1684,25 +1704,34 @@ INNERJS
     var redsel = "";
     var grnsel = "";
     var blusel = "";
-    if (kwclr=="red")   {var redsel="checked"};
-    if (kwclr=="green") {var grnsel="checked"};
-    if (kwclr=="blue")  {var blusel="checked"};
+    var txtcol1 = "$js_lt{'col1'}";
+    var txtcol2 = "$js_lt{'col2'}";
+    var txtcol3 = "$js_lt{'col3'}";
+    var txtsiz1 = "$js_lt{'siz1'}";
+    var txtsiz2 = "$js_lt{'siz2'}";
+    var txtsiz3 = "$js_lt{'siz3'}";
+    var txtsty1 = "$js_lt{'sty1'}";
+    var txtsty2 = "$js_lt{'sty2'}";
+    var txtsty3 = "$js_lt{'sty3'}";
+    if (kwclr=="red")   {var redsel="checked='checked'"};
+    if (kwclr=="green") {var grnsel="checked='checked'"};
+    if (kwclr=="blue")  {var blusel="checked='checked'"};
     var sznsel = "";
     var sz1sel = "";
     var sz2sel = "";
-    if (kwsize=="0")  {var sznsel="checked"};
-    if (kwsize=="+1") {var sz1sel="checked"};
-    if (kwsize=="+2") {var sz2sel="checked"};
+    if (kwsize=="0")  {var sznsel="checked='checked'"};
+    if (kwsize=="+1") {var sz1sel="checked='checked'"};
+    if (kwsize=="+2") {var sz2sel="checked='checked'"};
     var synsel = "";
     var syisel = "";
     var sybsel = "";
-    if (kwstyle=="")    {var synsel="checked"};
-    if (kwstyle=="<i>") {var syisel="checked"};
-    if (kwstyle=="<b>") {var sybsel="checked"};
+    if (kwstyle=="")    {var synsel="checked='checked'"};
+    if (kwstyle=="<i>") {var syisel="checked='checked'"};
+    if (kwstyle=="<b>") {var sybsel="checked='checked'"};
     highlightCentral();
-    highlightbody('red','red',redsel,'0','normal',sznsel,'','normal',synsel);
-    highlightbody('green','green',grnsel,'+1','+1',sz1sel,'<i>','italic',syisel);
-    highlightbody('blue','blue',blusel,'+2','+2',sz2sel,'<b>','bold',sybsel);
+    highlightbody('red',txtcol1,redsel,'0',txtsiz1,sznsel,'',txtsty1,synsel);
+    highlightbody('green',txtcol2,grnsel,'+1',txtsiz2,sz1sel,'<i>',txtsty2,syisel);
+    highlightbody('blue',txtcol3,blusel,'+2',txtsiz3,sz2sel,'<b>',txtsty3,sybsel);
     highlightend();
     return;
   }
@@ -1720,31 +1749,29 @@ INNERJS
     hDoc.$docopen;
     hDoc.write('$start_page_highlight_central');
     hDoc.write("<form action=\\"inactive\\" name=\\"hlCenter\\">");
-    hDoc.write("<h3><span class=\\"LC_info\\">&nbsp;$lt{'kehi'}<\\/span><\\/h3><br /><br />");
+    hDoc.write("<h1>$html_js_lt{'kehi'}<\\/h1>");
 
-    hDoc.write('<table border="0" width="100%"><tr><td bgcolor="#777777">');
-    hDoc.write('<table border="0" width="100%"><tr bgcolor="#DDFFFF">');
-    hDoc.write("<td><b>$lt{'txtc'}<\\/b><\\/td><td><b>$lt{'font'}<\\/b><\\/td><td><b>$lt{'fnst'}<\\/td><\\/tr>");
+    hDoc.write('<table border="0" width="100%"><tr style="background-color:#A1D676">');
+    hDoc.write("<th>$html_js_lt{'txtc'}<\\/th><th>$html_js_lt{'font'}<\\/th><th>$html_js_lt{'fnst'}<\\/th><\\/tr>");
   }
 
   function highlightbody(clrval,clrtxt,clrsel,szval,sztxt,szsel,syval,sytxt,sysel) { 
     var hDoc = hwdWin.document;
-    hDoc.write("<tr bgcolor=\\"#ffffdd\\">");
+    hDoc.write("<tr>");
     hDoc.write("<td align=\\"left\\">");
-    hDoc.write("<input name=\\"kwdclr\\" type=\\"radio\\" value=\\""+clrval+"\\" "+clrsel+">&nbsp;"+clrtxt+"<\\/td>");
+    hDoc.write("<input name=\\"kwdclr\\" type=\\"radio\\" value=\\""+clrval+"\\" "+clrsel+" \\/>&nbsp;"+clrtxt+"<\\/td>");
     hDoc.write("<td align=\\"left\\">");
-    hDoc.write("<input name=\\"kwdsize\\" type=\\"radio\\" value=\\""+szval+"\\" "+szsel+">&nbsp;"+sztxt+"<\\/td>");
+    hDoc.write("<input name=\\"kwdsize\\" type=\\"radio\\" value=\\""+szval+"\\" "+szsel+" \\/>&nbsp;"+sztxt+"<\\/td>");
     hDoc.write("<td align=\\"left\\">");
-    hDoc.write("<input name=\\"kwdstyle\\" type=\\"radio\\" value=\\""+syval+"\\" "+sysel+">&nbsp;"+sytxt+"<\\/td>");
+    hDoc.write("<input name=\\"kwdstyle\\" type=\\"radio\\" value=\\""+syval+"\\" "+sysel+" \\/>&nbsp;"+sytxt+"<\\/td>");
     hDoc.write("<\\/tr>");
   }
 
   function highlightend() { 
     var hDoc = hwdWin.document;
-    hDoc.write("<\\/table>");
-    hDoc.write("<\\/td><\\/tr><\\/table>&nbsp;");
-    hDoc.write("<input type=\\"button\\" value=\\"$lt{'save'}\\" onclick=\\"javascript:updateChoice(1)\\">&nbsp;&nbsp;");
-    hDoc.write("<input type=\\"button\\" value=\\"$lt{'canc'}\\" onclick=\\"self.close()\\"><br /><br />");
+    hDoc.write("<\\/table><br \\/>");
+    hDoc.write("<input type=\\"button\\" value=\\"$html_js_lt{'save'}\\" onclick=\\"javascript:updateChoice(1)\\" \\/>&nbsp;&nbsp;");
+    hDoc.write("<input type=\\"button\\" value=\\"$html_js_lt{'canc'}\\" onclick=\\"self.close()\\" \\/><br /><br />");
     hDoc.write("<\\/form>");
     hDoc.write('$end_page_highlight_central');
     hDoc.close();
@@ -2019,9 +2046,12 @@ sub submission {
     if ($symb eq '') { $request->print("Unable to handle ambiguous references:."); return ''; }
 
     if (!&canview($usec)) {
-	$request->print('<span class="LC_warning">Unable to view requested student.('.
-			$uname.':'.$udom.' in section '.$usec.' in course id '.
-			$env{'request.course.id'}.')</span>');
+        $request->print(
+            '<span class="LC_warning">'.
+            &mt('Unable to view requested student.').
+            ' '.&mt('([_1] in section [_2] in course id [_3])',
+                        $uname.':'.$udom,$usec,$env{'request.course.id'}).
+            '</span>');
 	$request->print(&show_grading_menu_form($symb));
 	return;
     }
@@ -2127,6 +2157,7 @@ sub submission {
 	if ($env{'form.handgrade'} eq 'yes' && $env{'form.showgrading'} eq 'yes') {
 
             my %lt = &Apache::lonlocal::texthash(
+                          keyh => 'Keyword Highlighting for Essays',
                           keyw => 'Keyword Options',
                           list => 'List',
                           past => 'Paste Selection to List',
@@ -2135,13 +2166,18 @@ sub submission {
 #
 # Print out the keyword options line
 #
-	    $request->print(<<KEYWORDS);
-&nbsp;<b>$lt{'keyw'}:</b>&nbsp;
-<a href="javascript:keywords(document.SCORE);" target="_self">$lt{'list'}</a>&nbsp; &nbsp;
-<a href="#" onmousedown="javascript:getSel(); return false"
- class="page">$lt{'past'}</a>&nbsp; &nbsp;
-<a href="javascript:kwhighlight();" target="_self">$lt{'high'}</a><br /><br />
-KEYWORDS
+            $request->print(
+                '<div class="LC_columnSection">'
+               .'<fieldset><legend>'.$lt{'keyh'}.'</legend>'
+               .&Apache::lonhtmlcommon::funclist_from_array(
+                    ['<a href="javascript:keywords(document.SCORE);" target="_self">'.$lt{'list'}.'</a>',
+                     '<a href="#" onmousedown="javascript:getSel(); return false"
+ class="page">'.$lt{'past'}.'</a>',
+                     '<a href="javascript:kwhighlight();" target="_self">'.$lt{'high'}.'</a>'],
+                    {legend => $lt{'keyw'}})
+               .'</fieldset></div>'
+            );
+
 #
 # Load the other essays for similarity check
 #
@@ -2276,7 +2312,7 @@ KEYWORDS
 		foreach my $submission (@$string) {
 		    my ($partid,$respid) = ($submission =~ /^resource\.([^\.]*)\.([^\.]*)\.submission/);
 		    if (join('_',@{$part}) ne ($partid.'_'.$respid)) { next; }
-		    my ($ressub,$hide,$subval) = split(/:/,$submission,3);
+		    my ($ressub,$hide,$draft,$subval) = split(/:/,$submission,4);
 		    # Similarity check
 		    my $similar='';
                     my ($type,$trial,$rndseed);
@@ -2345,9 +2381,17 @@ KEYWORDS
                         if ($hide eq 'anon') {
                             $lastsubonly.='<br /><b>'.&mt('Anonymous Survey').'</b>'; 
                         } else {
-			    $lastsubonly.='<br /><b>'.&mt('Submitted Answer:').' </b>'.
+			    $lastsubonly.='<br /><b>'.&mt('Submitted Answer:').' </b>';
+                            if ($draft) {
+                                $lastsubonly.= ' <span class="LC_warning">'.&mt('Draft Copy').'</span>';
+                            }
+                            $subval =
 			        &cleanRecord($subval,$responsetype,$symb,$partid,
 					     $respid,\%record,$order,undef,$uname,$udom,$type,$trial,$rndseed);
+                            if ($responsetype eq 'essay') {
+                                $subval =~ s{\n}{<br />}g;
+                            }
+                            $lastsubonly.=$subval."\n";
                         }
 			if ($similar) {$lastsubonly.="<br /><br />$similar\n";}
 			$lastsubonly.='</div>';
@@ -2362,10 +2406,12 @@ KEYWORDS
 	$request->print(&displaySubByDates($symb,\%record,$parts,$responseType,$checkIcon,$uname,$udom));
     }
     if ($env{'form.lastSub'} =~ /^(last|all)$/) {
+        my $identifier = (&canmodify($usec)? $counter : '');
 	$request->print(&Apache::loncommon::get_previous_attempt($symb,$uname,$udom,
 								 $env{'request.course.id'},
 								 $last,'.submission',
-								 'Apache::grades::keywords_highlight'));
+								 'Apache::grades::keywords_highlight',
+                                                                 $usec,$identifier));
     }
 
     $request->print('<input type="hidden" name="unamedom'.$counter.'" value="'.$uname.':'
@@ -2593,7 +2639,7 @@ sub get_last_submission {
             }
             unless ($hide) {
                 if (@randomize) {
-                    foreach my $id (@hidden) {
+                    foreach my $id (@randomize) {
                         if ($key =~ /^\Q$id\E/) {
                             $hide = 'rand';
                             last;
@@ -2602,9 +2648,10 @@ sub get_last_submission {
                 }
             }
 	    my ($partid,$foo) = split(/submission$/,$key);
-	    my $draft  = $lasthash{$partid.'awarddetail'} eq 'DRAFT' ?
-		'<span class="LC_warning">Draft Copy</span> ' : '';
-	    push(@string, join(':', $key, $hide, $draft.$lasthash{$key}));
+	    my $draft  = $lasthash{$partid.'awarddetail'} eq 'DRAFT' ? 1: 0;
+            push(@string, join(':', $key, $hide, $draft, (
+                ref($lasthash{$key}) eq 'ARRAY' ?
+                    join(',', @{$lasthash{$key}}) : $lasthash{$key}) ));
 	}
     }
     if (!@string) {
@@ -2632,16 +2679,20 @@ sub keywords_highlight {
 sub show_previous_task_version {
     my ($request,$symb) = @_;
     if ($symb eq '') {
-        $request->print("Unable to handle ambiguous references.");
-
+        $request->print(
+            '<span class="LC_error">'.
+            &mt('Unable to handle ambiguous references.').
+            '</span>');
         return '';
     }
     my ($uname,$udom) = ($env{'form.student'},$env{'form.userdom'});
     my $usec = &Apache::lonnet::getsection($udom,$uname,$env{'request.course.id'});
     if (!&canview($usec)) {
-        $request->print('<span class="LC_warning">Unable to view previous version for requested student.('.
-                        $uname.':'.$udom.' in section '.$usec.' in course id '.
-                        $env{'request.course.id'}.')</span>');
+        $request->print('<span class="LC_warning">'.
+                        &mt('Unable to view previous version for requested student.').
+                        ' '.&mt('([_1] in section [_2] in course id [_3])',
+                                $uname.':'.$udom,$usec,$env{'request.course.id'}).
+                        '</span>');
         return;
     }
     my $mode = 'both';
@@ -2819,16 +2870,26 @@ sub processHandGrade {
 	my $ctr = 0;
 	while ($ctr < $ngrade) {
 	    my ($uname,$udom) = split(/:/,$env{'form.unamedom'.$ctr});
-	    my ($errorflag,$pts,$wgt) = &saveHandGrade($request,$symb,$uname,$udom,$ctr);
+	    my ($errorflag,$pts,$wgt,$numhidden) = 
+                &saveHandGrade($request,$symb,$uname,$udom,$ctr);
 	    if ($errorflag eq 'no_score') {
 		$ctr++;
 		next;
 	    }
 	    if ($errorflag eq 'not_allowed') {
-		$request->print("<span class=\"LC_warning\">Not allowed to modify grades for $uname:$udom</span>");
+                $request->print(
+                    '<span class="LC_error">'
+                   .&mt('Not allowed to modify grades for [_1]',"$uname:$udom")
+                   .'</span>');
 		$ctr++;
 		next;
 	    }
+            if ($numhidden) {
+                $request->print(
+                    '<span class="LC_info">'
+                   .&mt('For [_1]: [quant,_2,transaction] hidden',"$uname:$udom",$numhidden)
+                   .'</span><br />');
+            }
 	    my $includemsg = $env{'form.includemsg'.$ctr};
 	    my ($subject,$message,$msgstatus) = ('','','');
 	    my $restitle = &Apache::lonnet::gettitle($symb);
@@ -3060,9 +3121,14 @@ sub saveHandGrade {
     my %record = &Apache::lonnet::restore($symb,$env{'request.course.id'},$domain,$stuname);
     my @parts_graded;
     my %newrecord  = ();
-    my ($pts,$wgt) = ('','');
+    my ($pts,$wgt,$totchg) = ('','',0);
     my %aggregate = ();
     my $aggregateflag = 0;
+    if ($env{'form.HIDE'.$newflg}) {
+        my ($version,$parts) = split(/:/,$env{'form.HIDE'.$newflg},2);
+        my $numchgs = &makehidden($version,$parts,\%record,$symb,$domain,$stuname,1);
+        $totchg += $numchgs;
+    }
     my @parts = split(/:/,$env{'form.partlist'.$newflg});
     foreach my $new_part (@parts) {
 	#collaborator ($submi may vary for different parts
@@ -3165,7 +3231,37 @@ sub saveHandGrade {
         &Apache::lonnet::cinc('nohist_resourcetracker',\%aggregate,
 			      $cdom,$cnum);
     }
-    return ('',$pts,$wgt);
+    return ('',$pts,$wgt,$totchg);
+}
+
+sub makehidden {
+    my ($version,$parts,$record,$symb,$domain,$stuname,$tolog) = @_;
+    return unless (ref($record) eq 'HASH');
+    my %modified;
+    my $numchanged = 0;
+    if (exists($record->{$version.':keys'})) {
+        my $partsregexp = $parts;
+        $partsregexp =~ s/,/|/g;
+        foreach my $key (split(/\:/,$record->{$version.':keys'})) {
+            if ($key =~ /^resource\.(?:$partsregexp)\.([^\.]+)$/) {
+                 my $item = $1;
+                 unless (($item eq 'solved') || ($item =~ /^award(|msg|ed)$/)) {
+                     $modified{$key} = $record->{$version.':'.$key};
+                 }
+            } elsif ($key =~ m{^(resource\.(?:$partsregexp)\.[^\.]+\.)(.+)$}) {
+                $modified{$1.'hidden'.$2} = $record->{$version.':'.$key};
+            } elsif ($key =~ /^(ip|timestamp|host)$/) {
+                $modified{$key} = $record->{$version.':'.$key};
+            }
+        }
+        if (keys(%modified)) {
+            if (&Apache::lonnet::putstore($env{'request.course.id'},$symb,$version,\%modified,
+                                          $domain,$stuname,$tolog) eq 'ok') {
+                $numchanged ++;
+            }
+        }
+    }
+    return $numchanged;
 }
 
 sub check_and_remove_from_queue {
@@ -3462,6 +3558,7 @@ sub viewgrades_js {
     my ($request) = shift;
 
     my $alertmsg = &mt('A number equal or greater than 0 is expected. Entered value = ');
+    &js_escape(\$alertmsg);
     $request->print(<<VIEWJAVASCRIPT);
 <script type="text/javascript" language="javascript">
    function writePoint(partid,weight,point) {
@@ -3657,19 +3754,67 @@ sub viewgrades {
 	'<input type="hidden" name="Status" value="'.$env{'stu_status'}.'" />'."\n".
 	'<input type="hidden" name="probTitle" value="'.$env{'form.probTitle'}.'" />'."\n";
 
-    my ($common_header,$specific_header);
-    if ($env{'form.section'} eq 'all') {
-	$common_header = &mt('Assign Common Grade to Class');
-        $specific_header = &mt('Assign Grade to Specific Students in Class');
-    } elsif ($env{'form.section'} eq 'none') {
-        $common_header = &mt('Assign Common Grade to Students in no Section');
-	$specific_header = &mt('Assign Grade to Specific Students in no Section');
-    } else {
-        my $section_display = join (", ",&Apache::loncommon::get_env_multiple('form.section'));
-        $common_header = &mt('Assign Common Grade to Students in Section(s) [_1]',$section_display);
-	$specific_header = &mt('Assign Grade to Specific Students in Section(s) [_1]',$section_display);
+    #retrieve selected groups
+    my (@groups,$group_display);
+    @groups = &Apache::loncommon::get_env_multiple(form.group');
+    if (grep(/^all$/,@groups)) {
+        @groups = ('all');
+    } elsif (grep(/^none$/,@groups)) {
+        @groups = ('none');
+    } elsif (@groups > 0) {
+        $group_display = join(', ',@groups);
+    }
+
+    my ($common_header,$specific_header,@sections,$section_display);
+    @sections = &Apache::loncommon::get_env_multiple('form.section');
+    if (grep(/^all$/,@sections)) {
+        @sections = ('all');
+        if ($group_display) {
+            $common_header = &mt('Assign Common Grade to Students in Group(s) [_1]',$group_display);
+            $specific_header = &mt('Assign Grade to Specific Students in Group(s) [_1]',$group_display);
+        } elsif (grep(/^none$/,@groups)) {
+            $common_header = &mt('Assign Common Grade to Students not assigned to any groups');
+            $specific_header = &mt('Assign Grade to Specific Students not assigned to any groups');
+        } else {
+            $common_header = &mt('Assign Common Grade to Class');
+            $specific_header = &mt('Assign Grade to Specific Students in Class');
+        }
+    } elsif (grep(/^none$/,@sections)) {
+        @sections = ('none');
+        if ($group_display) {
+            $common_header = &mt('Assign Common Grade to Students in no Section and in Group(s) [_1]',$group_display);
+            $specific_header = &mt('Assign Grade to Specific Students in no Section and in Group(s)',$group_display);
+        } elsif (grep(/^none$/,@groups)) {
+            $common_header = &mt('Assign Common Grade to Students in no Section and in no Group');
+            $specific_header = &mt('Assign Grade to Specific Students in no Section and in no Group');
+        } else {
+            $common_header = &mt('Assign Common Grade to Students in no Section');
+            $specific_header = &mt('Assign Grade to Specific Students in no Section');
+        }
+    } else {
+        $section_display = join (", ",@sections);
+        if ($group_display) {
+            $common_header = &mt('Assign Common Grade to Students in Section(s) [_1], and in Group(s) [_2]',
+                                 $section_display,$group_display);
+            $specific_header = &mt('Assign Grade to Specific Students in Section(s) [_1], and in Group(s) [_2]',
+                                   $section_display,$group_display);
+        } elsif (grep(/^none$/,@groups)) {
+            $common_header = &mt('Assign Common Grade to Students in Section(s) [_1] and no Group',$section_display);
+            $specific_header = &mt('Assign Grade to Specific Students in Section(s) [_1] and no Group',$section_display);
+        } else {
+            $common_header = &mt('Assign Common Grade to Students in Section(s) [_1]',$section_display);
+            $specific_header = &mt('Assign Grade to Specific Students in Section(s) [_1]',$section_display);
+        }
+    }
+    my %submit_types = &substatus_options();
+    my $submission_status = $submit_types{$env{'form.submitonly'}};
+
+    if ($env{'form.submitonly'} eq 'all') {
+        $result.= '<h3>'.$common_header.'</h3>';
+    } else {
+        $result.= '<h3>'.$common_header.'&nbsp;'.&mt('(submission status: "[_1]")',$submission_status).'</h3>'; 
     }
-    $result.= '<h3>'.$common_header.'</h3>'.&Apache::loncommon::start_data_table();
+    $result .= &Apache::loncommon::start_data_table();
     #radio buttons/text box for assigning points for a section or class.
     #handles different parts of a problem
     my $res_error;
@@ -3732,8 +3877,12 @@ sub viewgrades {
 
     #table listing all the students in a section/class
     #header of table
-    $result.= '<h3>'.$specific_header.'</h3>'.
-              &Apache::loncommon::start_data_table().
+    if ($env{'form.submitonly'} eq 'all') { 
+        $result.= '<h3>'.$specific_header.'</h3>';
+    } else {
+        $result.= '<h3>'.$specific_header.'&nbsp;'.&mt('(submission status: "[_1]")',$submission_status).'</h3>';
+    }
+    $result.= &Apache::loncommon::start_data_table().
 	      &Apache::loncommon::start_data_table_header_row().
 	      '<th>'.&mt('No.').'</th>'.
 	      '<th>'.&nameUserString('header')."</th>\n";
@@ -3776,7 +3925,7 @@ sub viewgrades {
 
     #get info for each student
     #list all the students - with points and grade status
-    my (undef,undef,$fullname) = &getclasslist($env{'form.section'},'1');
+    my (undef,undef,$fullname) = &getclasslist(\@sections,'1',\@groups);
     my $ctr = 0;
     foreach (sort 
 	     {
@@ -3785,36 +3934,143 @@ sub viewgrades {
 		 }
 		 return $a cmp $b;
 	     } (keys(%$fullname))) {
-	$ctr++;
 	$result.=&viewstudentgrade($symb,$env{'request.course.id'},
-				   $_,$$fullname{$_},\@parts,\%weight,$ctr,\%last_resets);
+				   $_,$$fullname{$_},\@parts,\%weight,\$ctr,\%last_resets);
     }
     $result.=&Apache::loncommon::end_data_table();
     $result.='<input type="hidden" name="total" value="'.$ctr.'" />'."\n";
     $result.='<input type="button" value="'.&mt('Save').'" '.
 	'onclick="javascript:submit();" target="_self" /></form>'."\n";
-    if (scalar(%$fullname) eq 0) {
-	my $colspan=3+scalar(@parts);
-	my $section_display = join (", ",&Apache::loncommon::get_env_multiple('form.section'));
+    if ($ctr == 0) {
         my $stu_status = join(' or ',&Apache::loncommon::get_env_multiple('form.Status'));
-	$result='<span class="LC_warning">'.
-	    &mt('There are no students in section(s) [_1] with enrollment status [_2] to modify or grade.',
-	        $section_display, $stu_status).
-	    '</span>';
+        $result='<h3><span class="LC_info">'.&mt('Manual Grading').'</span></h3>'.
+                '<span class="LC_warning">';
+        if ($env{'form.submitonly'} eq 'all') {
+            if (grep(/^all$/,@sections)) {
+                if (grep(/^all$/,@groups)) {
+                    $result .= &mt('There are no students with enrollment status [_1] to modify or grade.',
+                                   $stu_status);
+                } elsif (grep(/^none$/,@groups)) {
+                    $result .= &mt('There are no students with no group assigned and with enrollment status [_1] to modify or grade.',
+                                   $stu_status);
+                } else {
+                    $result .= &mt('There are no students in group(s) [_1] with enrollment status [_2] to modify or grade.',
+                                   $group_display,$stu_status);
+                }
+            } elsif (grep(/^none$/,@sections)) {
+                if (grep(/^all$/,@groups)) {
+                    $result .= &mt('There are no students in no section with enrollment status [_1] to modify or grade.',
+                                   $stu_status);
+                } elsif (grep(/^none$/,@groups)) {
+                    $result .= &mt('There are no students in no section and no group with enrollment status [_1] to modify or grade.',
+                                   $stu_status);
+                } else {
+                    $result .= &mt('There are no students in no section in group(s) [_1] with enrollment status [_2] to modify or grade.',
+                                   $group_display,$stu_status);
+                }
+            } else {
+                if (grep(/^all$/,@groups)) {
+                    $result .= &mt('There are no students in section(s) [_1] with enrollment status [_2] to modify or grade.',
+                                   $section_display,$stu_status);
+                } elsif (grep(/^none$/,@groups)) {
+                    $result .= &mt('There are no students in section(s) [_1] nd no group with enrollment status [_2] to modify or grade.',
+                                   $section_display,$stu_status);
+                } else {
+                    $result .= &mt('There are no students in section(s) [_1] and group(s) [_2] with enrollment status [_3] to modify or grade.',
+                                   $section_display,$group_display,$stu_status);
+                }
+            }
+        } else {
+            if (grep(/^all$/,@sections)) {
+                if (grep(/^all$/,@groups)) {
+                    $result .= &mt('There are no students with enrollment status [_1] and submission status "[_2]" to modify or grade.',
+                                   $stu_status,$submission_status);
+                } elsif (grep(/^none$/,@groups)) {
+                    $result .= &mt('There are no students with no group assigned with enrollment status [_1] and submission status "[_2]" to modify or grade.',
+                                   $stu_status,$submission_status);
+                } else {
+                    $result .= &mt('There are no students in group(s) [_1] with enrollment status [_2] and submission status "[_3]" to modify or grade.',
+                                   $group_display,$stu_status,$submission_status);
+                }
+            } elsif (grep(/^none$/,@sections)) {
+                if (grep(/^all$/,@groups)) {
+                    $result .= &mt('There are no students in no section with enrollment status [_1] and submission status "[_2]" to modify or grade.',
+                                   $stu_status,$submission_status);
+                } elsif (grep(/^none$/,@groups)) {
+                    $result .= &mt('There are no students in no section and no group with enrollment status [_1] and submission status "[_2]" to modify or grade.',
+                                   $stu_status,$submission_status);
+                } else {
+                    $result .= &mt('There are no students in no section in group(s) [_1] with enrollment status [_2] and submission status "[_3]" to modify or grade.',
+                                   $group_display,$stu_status,$submission_status);
+                }
+            } else {
+                if (grep(/^all$/,@groups)) {
+                    $result .= &mt('There are no students in section(s) [_1] with enrollment status [_2] and submission status "[_3]" to modify or grade.',
+                                   $section_display,$stu_status,$submission_status);
+                } elsif (grep(/^none$/,@groups)) {
+                    $result .= &mt('There are no students in section(s) [_1] and no group with enrollment status [_2] and submission status "[_3]" to modify or grade.',
+                                   $section_display,$stu_status,$submission_status);
+                } else {
+                    $result .= &mt('There are no students in section(s) [_1] and group(s) [_2] with enrollment status [_3] and submission status "[_4]" to modify or grade.',
+                                   $section_display,$group_display,$stu_status,$submission_status);
+                }
+            }
+	}
+	$result .= '</span><br />';
     }
     $result.=&show_grading_menu_form($symb);
     return $result;
 }
 
-#--- call by previous routine to display each student
+#--- call by previous routine to display each student who satisfies submission filter.
 sub viewstudentgrade {
     my ($symb,$courseid,$student,$fullname,$parts,$weight,$ctr,$last_resets) = @_;
     my ($uname,$udom) = split(/:/,$student);
     my %record=&Apache::lonnet::restore($symb,$courseid,$udom,$uname);
-    my %aggregates = (); 
+    my $submitonly = $env{'form.submitonly'};
+    unless (($submitonly eq 'all') || ($submitonly eq 'queued')) {
+        my %partstatus = ();
+        if (ref($parts) eq 'ARRAY') {
+            foreach my $apart (@{$parts}) {
+                my ($part,$type) = &split_part_type($apart);
+                my ($status,undef) = split(/_/,$record{"resource.$part.solved"},2);
+                $status = 'nothing' if ($status eq '');
+                $partstatus{$part}      = $status;
+                my $subkey = "resource.$part.submitted_by";
+                $partstatus{$subkey} = $record{$subkey} if ($record{$subkey} ne '');
+            }
+            my $submitted = 0;
+            my $graded = 0;
+            my $incorrect = 0;
+            foreach my $key (keys(%partstatus)) {
+                $submitted = 1 if ($partstatus{$key} ne 'nothing');
+                $graded = 1 if ($partstatus{$key} =~ /^ungraded/);
+                $incorrect = 1 if ($partstatus{$key} =~ /^incorrect/);
+
+                my $partid = (split(/\./,$key))[1];
+                if ($partstatus{'resource.'.$partid.'.'.$key.'.submitted_by'} ne '') {
+                    $submitted = 0;
+                }
+            }
+            return if (!$submitted && ($submitonly eq 'yes' ||
+                                       $submitonly eq 'incorrect' ||
+                                       $submitonly eq 'graded'));
+            return if (!$graded && ($submitonly eq 'graded'));
+            return if (!$incorrect && $submitonly eq 'incorrect');
+        }
+    }
+    if ($submitonly eq 'queued') {
+        my ($cdom,$cnum) = split(/_/,$courseid);
+        my %queue_status =
+            &Apache::bridgetask::get_student_status($symb,$cdom,$cnum,
+                                                    $udom,$uname);
+        return if (!defined($queue_status{'gradingqueue'}));
+    }
+    $$ctr++;
+    my %aggregates = ();
     my $result=&Apache::loncommon::start_data_table_row().'<td align="right">'.
-	'<input type="hidden" name="ctr'.($ctr-1).'" value="'.$student.'" />'.
-	"\n".$ctr.'&nbsp;</td><td>&nbsp;'.
+	'<input type="hidden" name="ctr'.($$ctr-1).'" value="'.$student.'" />'.
+	"\n".$$ctr.'&nbsp;</td><td>&nbsp;'.
 	'<a href="javascript:viewOneStudent(\''.$uname.'\',\''.$udom.
 	'\');" target="_self">'.$fullname.'</a> '.
 	'<span class="LC_internal_info">('.$uname.($env{'user.domain'} eq $udom ? '' : ':'.$udom).')</span></td>'."\n";
@@ -4118,6 +4374,8 @@ sub split_part_type {
 sub csvupload_javascript_reverse_associate {
     my $error1=&mt('You need to specify the username or the student/employee ID');
     my $error2=&mt('You need to specify at least one grading field');
+  &js_escape(\$error1);
+  &js_escape(\$error2);
   return(<<ENDPICK);
   function verify(vf) {
     var foundsomething=0;
@@ -4158,6 +4416,8 @@ ENDPICK
 sub csvupload_javascript_forward_associate {
     my $error1=&mt('You need to specify the username or the student/employee ID');
     my $error2=&mt('You need to specify at least one grading field');
+  &js_escape(\$error1);
+  &js_escape(\$error2);
   return(<<ENDPICK);
   function verify(vf) {
     var foundsomething=0;
@@ -4277,6 +4537,7 @@ ENDPICK
 
 sub checkforfile_js {
     my $alertmsg = &mt('Please use the browse button to select a file from your local directory.');
+    &js_escape(\$alertmsg);
     my $result =<<CSVFORMJS;
 <script type="text/javascript" language="javascript">
     function checkUpload(formname) {
@@ -4573,6 +4834,7 @@ sub pickStudentPage {
     my ($request) = shift;
 
     my $alertmsg = &mt('Please select the student you wish to grade.');
+    &js_escape(\$alertmsg);
     $request->print(<<LISTJAVASCRIPT);
 <script type="text/javascript" language="javascript">
 
@@ -4748,9 +5010,12 @@ sub displayPage {
     &Apache::lonnet::clear_EXT_cache_status();
 
     if (!&canview($usec)) {
-	$request->print('<span class="LC_warning">'.&mt('Unable to view requested student. ([_1])',$env{'form.student'}).'</span>');
-	$request->print(&show_grading_menu_form($symb));
-	return;
+	$request->print('<span class="LC_warning">'.
+                        &mt('Unable to view requested student. ([_1])',
+                            $env{'form.student'}).
+                        '</span>');
+        $request->print(&show_grading_menu_form($symb));
+        return;
     }
     my $result='<h3><span class="LC_info">&nbsp;'.$env{'form.title'}.'</span></h3>';
     $result.='<h3>&nbsp;'.&mt('Student: [_1]',&nameUserString(undef,$$fullname{$env{'form.student'}},$uname,$udom)).
@@ -4864,9 +5129,11 @@ sub displayPage {
 		}
 	    } elsif ($env{'form.lastSub'} eq 'all') {
 		my $last = ($env{'form.lastSub'} eq 'last' ? 'last' : '');
+                my $identifier = (&canmodify($usec)? $prob : '');
 		$studentTable.=&Apache::loncommon::get_previous_attempt($symbx,$uname,$udom,
 									$env{'request.course.id'},
-									'','.submission');
+									'','.submission',undef,
+                                                                        $usec,$identifier);
  
 	    }
 	    if (&canmodify($usec)) {
@@ -4919,7 +5186,7 @@ sub displaySubByDates {
 
     my $interaction;
     my $no_increment = 1;
-    my %lastrndseed;
+    my (%lastrndseed,%lasttype);
     for ($version=1;$version<=$$record{'version'};$version++) {
 	my $timestamp = 
 	    &Apache::lonlocal::locallocaltime($$record{$version.':timestamp'});
@@ -4977,11 +5244,14 @@ sub displaySubByDates {
 		        } else {
 			    $displaySub[0].=&mt('Trial: [_1]',
 					    $$record{"$where.$partid.tries"});
-                            if ($rndseed || $lastrndseed{$partid}) {
-                                if ($rndseed ne $lastrndseed{$partid}) {
+                            if (($rndseed ne '')  && ($lastrndseed{$partid} ne '')) {
+                                if (($rndseed ne $lastrndseed{$partid}) &&
+                                    (($type eq 'randomizetry') || ($lasttype{$partid} eq 'randomizetry'))) {
                                     $newvariation = '&nbsp;('.&mt('New variation this try').')';
                                 }
                             }
+                            $lastrndseed{$partid} = $rndseed;
+                            $lasttype{$partid} = $type;
 		        }
 		        my $responseType=($isTask ? 'Task'
                                               : $responseType->{$partid}->{$responseId});
@@ -5082,7 +5352,7 @@ sub updateGradeByPage {
 
     $iterator->next(); # skip the first BEGIN_MAP
     my $curRes = $iterator->next(); # for "current resource"
-    my ($depth,$question,$prob,$changeflag)= (1,1,1,0);
+    my ($depth,$question,$prob,$changeflag,$hideflag)= (1,1,1,0,0);
     while ($depth > 0) {
         if($curRes == $iterator->BEGIN_MAP) { $depth++; }
         if($curRes == $iterator->END_MAP) { $depth--; }
@@ -5103,6 +5373,12 @@ sub updateGradeByPage {
 	    my @displayPts=();
             my %aggregate = ();
             my $aggregateflag = 0;
+            if ($env{'form.HIDE'.$prob}) {
+                my %record = &Apache::lonnet::restore($symbx,$env{'request.course.id'},$udom,$uname);
+                my ($version,$parts) = split(/:/,$env{'form.HIDE'.$prob},2);
+                my $numchgs = &makehidden($version,$parts,\%record,$symbx,$udom,$uname,1);
+                $hideflag += $numchgs;
+            }
 	    foreach my $partid (@{$parts}) {
 		my $newpts = $env{'form.GD_BOX'.$question.'_'.$partid};
 		my $oldpts = $env{'form.oldpts'.$question.'_'.$partid};
@@ -5194,8 +5470,11 @@ sub updateGradeByPage {
     $studentTable.=&show_grading_menu_form($env{'form.symb'});
     my $grademsg=($changeflag == 0 ? &mt('No score was changed or updated.') :
 		  &mt('The scores were changed for [quant,_1,problem].',
-		  $changeflag));
-    $request->print($grademsg.$studentTable);
+		  $changeflag).'<br />');
+    my $hidemsg=($hideflag == 0 ? '' :
+                 &mt('Submissions were marked "hidden" for [quant,_1,transaction].',
+                     $hideflag).'<br />');
+    $request->print($hidemsg.$grademsg.$studentTable);
 
     return '';
 }
@@ -5591,11 +5870,13 @@ sub scantron_selectphase {
     my $default_form_data=&defaultFormData(&get_symb($r,1));
     my $cdom= $env{'course.'.$env{'request.course.id'}.'.domain'};
     my $cnum= $env{'course.'.$env{'request.course.id'}.'.num'};
+    my $alertmsg = &mt('Please use the browse button to select a file from your local directory.');
+    &js_escape(\$alertmsg);
     $r->print('
               <script type="text/javascript" language="javascript">
     function checkUpload(formname) {
         if (formname.upfile.value == "") {
-            alert("'.&mt('Please use the browse button to select a file from your local directory.').'");
+            alert("'.$alertmsg.'");
             return false;
         }
         formname.submit();
@@ -5844,8 +6125,17 @@ sub username_to_idmap {
     my ($classlist)= @_;
     my %idmap;
     foreach my $student (keys(%$classlist)) {
-	$idmap{$classlist->{$student}->[&Apache::loncoursedata::CL_ID]}=
-	    $student;
+        my $id = $classlist->{$student}->[&Apache::loncoursedata::CL_ID];
+        unless ($id eq '') {
+            if (!exists($idmap{$id})) {
+                $idmap{$id} = $student;
+            } else {
+                my $status = $classlist->{$student}->[&Apache::loncoursedata::CL_STATUS];
+                if ($status eq 'Active') {
+                    $idmap{$id} = $student;
+                }
+            }
+        }
     }
     return %idmap;
 }
@@ -6715,7 +7005,7 @@ sub scantron_warning_screen {
 	$scantron_config{'CODEstart'} &&
 	$scantron_config{'CODElength'}) {
 	$CODElist=$env{'form.scantron_CODElist'};
-	if ($env{'form.scantron_CODElist'} eq '') { $CODElist='<span class="LC_warning">None</span>'; }
+	if ($env{'form.scantron_CODElist'} eq '') { $CODElist='<span class="LC_warning">'.&mt('None').'</span>'; }
 	$CODElist=
 	    '<tr><td><b>'.&mt('List of CODES to validate against:').'</b></td><td><tt>'.
 	    $env{'form.scantron_CODElist'}.'</tt></td></tr>';
@@ -6729,7 +7019,7 @@ sub scantron_warning_screen {
     return ('
 <p>
 <span class="LC_warning">
-'.&mt('Please double check the information below before clicking on \'[_1]\'',&mt($button_text)).'</span>
+'.&mt("Please double check the information below before clicking on '[_1]'",&mt($button_text)).'</span>
 </p>
 <table>
 <tr><td><b>'.&mt('Sequence to be Graded:').'</b></td><td>'.$title.'</td></tr>
@@ -7575,6 +7865,7 @@ sub verify_bubbles_checked {
     my (@ansnums) = @_;
     my $ansnumstr = join('","',@ansnums);
     my $warning = &mt("A bubble or 'No bubble' selection has not been made for one or more lines.");
+    &js_escape(\$warning);
     my $output = (<<ENDSCRIPT);
 <script type="text/javascript">
 function verify_bubble_radio(form) {
@@ -7732,7 +8023,7 @@ sub prompt_for_corrections {
             }
         } else {
             $responsenum = $question-1;
-            $first = $first_bubble_line{$responsenum} + 1;
+            $first = $first_bubble_line{$responsenum};
         }
         $current_line = $first + 1 ;
         my @subans = split(/,/,$subdivided_bubble_lines{$responsenum});
@@ -8344,7 +8635,7 @@ sub hand_bubble_option {
         return &mt('The sequence to be graded contains response types which are handgraded.').'<p>'.
                &mt('If you have already graded these by bubbling sheets to indicate points awarded, [_1]what point value is assigned to a filled last bubble in each row?','<br />').
                '<label><input type="radio" name="scantron_lastbubblepoints" value="'.$bubbles_per_row.'" checked="checked" />'.&mt('[quant,_1,point]',$bubbles_per_row).'</label>&nbsp;'.&mt('or').'&nbsp;'.
-               '<label><input type="radio" name="scantron_lastbubblepoints" value="0"/>0 points</label></p>';
+               '<label><input type="radio" name="scantron_lastbubblepoints" value="0" />'.&mt('0 points').'</label></p>';
     }
     return;
 }
@@ -8765,7 +9056,9 @@ sub scantron_upload_scantron_data {
     my ($symb) = &get_symb($r,1);
     my $default_form_data=&defaultFormData($symb);
     my $nofile_alert = &mt('Please use the browse button to select a file from your local directory.');
+    &js_escape(\$nofile_alert);
     my $nocourseid_alert = &mt("Please use the 'Select Course' link to open a separate window where you can search for a course to which a file can be uploaded.");
+    &js_escape(\$nocourseid_alert);
     $r->print('
 <script type="text/javascript" language="javascript">
     function checkUpload(formname) {
@@ -8844,23 +9137,30 @@ sub scantron_upload_scantron_data_save {
     }
     my %coursedata=&Apache::lonnet::coursedescription($env{'form.domainid'}.'_'.$env{'form.courseid'});
     my $uploadedfile;
-    $r->print('<h3>'.&mt("Uploading file to [_1]",$coursedata{'description'}).'</h3>');
+    $r->print('<p>'.&mt("Uploading file to [_1]",$coursedata{'description'}).'</p>');
     if (length($env{'form.upfile'}) < 2) {
-        $r->print(&mt('[_1]Error:[_2] The file you attempted to upload, [_3] contained no information. Please check that you entered the correct filename.','<span class="LC_error">','</span>','<span class="LC_filename">'.&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"').'</span>'));
+        $r->print(
+            &Apache::lonhtmlcommon::confirm_success(
+                &mt('The file: [_1] you attempted to upload contained no information. Please check that you entered the correct filename.',
+                        '<span class="LC_filename">'.&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"').'</span>'),1));
     } else {
         my $result = 
             &Apache::lonnet::userfileupload('upfile','','scantron','','','',
                                             $env{'form.courseid'},$env{'form.domainid'});
 	if ($result =~ m{^/uploaded/}) {
-	    $r->print(&mt('[_1]Success:[_2] Successfully uploaded [_3] bytes of data into location: [_4]',
-                          '<span class="LC_success">','</span>',(length($env{'form.upfile'})-1),
-			  '<span class="LC_filename">'.$result.'</span>'));
+            $r->print(
+                &Apache::lonhtmlcommon::confirm_success(&mt('Upload successful')).'<br />'.
+                &mt('Uploaded [_1] bytes of data into location: [_2]',
+                        (length($env{'form.upfile'})-1),
+                        '<span class="LC_filename">'.$result.'</span>'));
             ($uploadedfile) = ($result =~ m{/([^/]+)$});
             $r->print(&validate_uploaded_scantron_file($env{'form.domainid'},
                                                        $env{'form.courseid'},$uploadedfile));
 	} else {
-	    $r->print(&mt('[_1]Error:[_2] An error ([_3]) occurred when attempting to upload the file, [_4]',
-                          '<span class="LC_error">','</span>',$result,
+            $r->print(
+                &Apache::lonhtmlcommon::confirm_success(&mt('Upload failed'),1).'<br />'.
+                    &mt('An error ([_1]) occurred when attempting to upload the file: [_2]',
+                          $result,
 			  '<span class="LC_filename">'.&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"').'</span>'));
 	}
     }
@@ -8882,7 +9182,7 @@ sub validate_uploaded_scantron_file {
     my $output;
     if (@lines) {
         my (%counts,$max_match_format);
-        my ($max_match_count,$max_match_pct) = (0,0);
+        my ($found_match_count,$max_match_count,$max_match_pct) = (0,0,0);
         my $classlist = &Apache::loncoursedata::get_classlist($cdom,$cname);
         my %idmap = &username_to_idmap($classlist);
         foreach my $key (keys(%idmap)) {
@@ -8925,6 +9225,7 @@ sub validate_uploaded_scantron_file {
                 if (($max_match_format eq '') || ($percent_match > $max_match_pct)) {
                     $max_match_pct = $percent_match;
                     $max_match_format = $key;
+                    $found_match_count = $counts{$key}{'found'};
                     $max_match_count = $counts{$key}{'total'};
                 }
             }
@@ -8943,17 +9244,40 @@ sub validate_uploaded_scantron_file {
                 }
             }
             my $showpct = sprintf("%.0f",$max_match_pct).'%';
-            $output .= '<br />'.&mt('Comparison of student IDs in the uploaded file with the course roster found matches for [_1] of the [_2] entries in the file (for the format defined for [_3]).','<b>'.$showpct.'</b>','<b>'.$max_match_count.'</b>',$format_descs).
-                       '<br />'.&mt('A low percentage of matches results from one of the following:').'<ul>'.
-                       '<li>'.&mt('The file was uploaded to the wrong course').'</li>'.
-                       '<li>'.&mt('The data are not in the format expected for the domain: [_1]',
-                                  '<i>'.$cdom.'</i>').'</li>'.
-                       '<li>'.&mt('Students did not bubble their IDs, or mis-bubbled them').'</li>'.
-                       '<li>'.&mt('The course roster is not up to date').'</li>'.
-                       '</ul>';
+            $output .= '<br />';
+            if ($found_match_count == $max_match_count) {
+                # 100% matching entries
+                $output .= &Apache::lonhtmlcommon::confirm_success(
+                     &mt('Comparison of student IDs: [_1] matching ([quant,_2,entry,entries])',
+                            '<b>'.$showpct.'</b>',$found_match_count)).'<br />'.
+                &mt('Comparison of student IDs in the uploaded file with'.
+                    ' the course roster found matches for [_1] of the [_2] entries'.
+                    ' in the file (for the format defined for [_3]).',
+                        '<b>'.$showpct.'</b>','<b>'.$max_match_count.'</b>',$format_descs);
+            } else {
+                # Not all entries matching? -> Show warning and additional info
+                $output .=
+                    &Apache::lonhtmlcommon::confirm_success(
+                        &mt('Comparison of student IDs: [_1] matching ([_2]/[quant,_3,entry,entries])',
+                                '<b>'.$showpct.'</b>',$found_match_count,$max_match_count).'<br />'.
+                        &mt('Not all entries could be matched!'),1).'<br />'.
+                    &mt('Comparison of student IDs in the uploaded file with'.
+                        ' the course roster found matches for [_1] of the [_2] entries'.
+                        ' in the file (for the format defined for [_3]).',
+                            '<b>'.$showpct.'</b>','<b>'.$max_match_count.'</b>',$format_descs).
+                    '<p class="LC_info">'.
+                    &mt('A low percentage of matches results from one of the following:').
+                    '</p><ul>'.
+                    '<li>'.&mt('The file was uploaded to the wrong course.').'</li>'.
+                    '<li>'.&mt('The data is not in the format expected for the domain: [_1]',
+                               '<i>'.$cdom.'</i>').'</li>'.
+                    '<li>'.&mt('Students did not bubble their IDs, or mis-bubbled them').'</li>'.
+                    '<li>'.&mt('The course roster is not up to date.').'</li>'.
+                    '</ul>';
+            }
         }
     } else {
-        $output = '<span class="LC_warning">'.&mt('Uploaded file contained no data').'</span>';
+        $output = '<p class="LC_warning">'.&mt('Uploaded file contained no data').'</p>';
     }
     return $output;
 }
@@ -8990,7 +9314,7 @@ sub scantron_download_scantron_data {
     &Apache::lonnet::allowuploaded('/adm/grades',$skipped);
     $r->print('
     <p>
-	'.&mt('[_1]Original[_2] file as uploaded by the scantron office.',
+	'.&mt('[_1]Original[_2] file as uploaded by bubblesheet scanning office.',
 	      '<a href="'.$orig.'">','</a>').'
     </p>
     <p>
@@ -9054,7 +9378,7 @@ sub checkscantron_results {
 
     my $count=&get_todo_count($scanlines,$scan_data);
     my %prog_state=&Apache::lonhtmlcommon::Create_PrgWin($r,$count);
-    my ($username,$domain,$started,%ordered);
+    my ($username,$domain,$started);
     &scantron_get_maxbubble(\$nav_error,\%scantron_config); # Need the bubble lines array to parse.
     if ($nav_error) {
         $r->print(&navmap_errormsg());
@@ -9166,14 +9490,14 @@ sub checkscantron_results {
 '<td>'.&mt('Bubblesheet').'</td><td>'.$showscandata.'</td><td rowspan="2">'.$last.'</td><td rowspan="2">'.$pid.'</td>'."\n".
 '</tr>'."\n".
 '<tr class="'.$css_class.'">'."\n".
-'<td>Submissions</td><td>'.$showrecord.'</td></tr>'."\n";
+'<td>'.&mt('Submissions').'</td><td>'.$showrecord.'</td></tr>'."\n";
                     $passed ++;
                 } else {
                     my $css_class = ($failed % 2)?'LC_odd_row':'LC_even_row';
                     $badstudents .= '<tr class="'.$css_class.'"><td>'.&mt('Bubblesheet').'</td><td><span class="LC_nobreak">'.$scandata{$pid}.'</span></td><td rowspan="2">'.$last.'</td><td rowspan="2">'.$pid.'</td>'."\n".
 '</tr>'."\n".
 '<tr class="'.$css_class.'">'."\n".
-'<td>Submissions</td><td><span class="LC_nobreak">'.$record{$pid}.'</span></td>'."\n".
+'<td>'.&mt('Submissions').'</td><td><span class="LC_nobreak">'.$record{$pid}.'</span></td>'."\n".
 '</tr>'."\n";
                     $failed ++;
                 }
@@ -9678,6 +10002,15 @@ GRADINGMENUJS
     return $result;
 }
 
+sub substatus_options {
+    return &Apache::lonlocal::texthash(
+                                      'yes'       => 'with submissions',
+                                      'queued'    => 'in grading queue',
+                                      'graded'    => 'with ungraded submissions',
+                                      'incorrect' => 'with incorrect submissions',
+                                      'all'       => 'with any status');
+}
+
 sub reset_perm {
     undef(%perm);
 }
@@ -9946,16 +10279,18 @@ sub process_clicker_file {
 	    $number++;
 	}
         $result.="</p>\n";
-	if ($number==0) {
-	    $result.='<span class="LC_error">'.&mt('No IDs found to determine correct answer').'</span>';
-	    return $result.&show_grading_menu_form($symb);
-	}
+        if ($number==0) {
+            $result .=
+                 &Apache::lonhtmlcommon::confirm_success(
+                     &mt('No IDs found to determine correct answer'),1);
+            return $result,.&show_grading_menu_form($symb);
+        }
     }
     if (length($env{'form.upfile'}) < 2) {
-        $result.=&mt('[_1] Error: [_2] The file you attempted to upload, [_3] contained no information. Please check that you entered the correct filename.',
-		     '<span class="LC_error">',
-		     '</span>',
-		     '<span class="LC_filename">'.&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"').'</span>');
+        $result .=
+            &Apache::lonhtmlcommon::confirm_success(
+                &mt('The file: [_1] you attempted to upload contained no information. Please check that you entered the correct filename.',
+                        '<span class="LC_filename">'.&HTML::Entities::encode($env{'form.upfile.filename'},'<>&"').'</span>'),1);
         return $result.&show_grading_menu_form($symb);
     }
 
@@ -10513,11 +10848,11 @@ At least the logic that drives this has
 ssi_with_retries - Does the server side include of a resource.
                      if the ssi call returns an error we'll retry it up to
                      the number of times requested by the caller.
-                     If we still have a proble, no text is appended to the
+                     If we still have a problem, no text is appended to the
                      output and we set some global variables.
                      to indicate to the caller an SSI error occurred.  
                      All of this is supposed to deal with the issues described
-                     in LonCAPA BZ 5631 see:
+                     in LON-CAPA BZ 5631 see:
                      http://bugs.lon-capa.org/show_bug.cgi?id=5631
                      by informing the user that this happened.