|
version 1.3, 2007/10/11 00:42:00
|
version 1.4, 2014/08/22 17:57:54
|
|
Line 1
|
Line 1
|
| |
/* Jmol 12.0 script library Jmol.js 5/20/2013 7:34:08 AM Bob Hanson
|
|
|
|
| /* Jmol 11.0 script library Jmol.js (aka Jmol-11.js) 1:34 AM 3/19/2007
|
|
|
|
|
| checkbox heirarchy -- see http://www.stolaf.edu/academics/jmol/docs/examples-11/check.htm
|
NOTE: THIS LIBRARY IS DEPRECATED STARTING WITH Jmol 13.0.
|
| |
IT STILL WORKS (AND ALWAYS WILL, PROBABLY).
|
| |
PLEASE USE the set JmolCore.js/JmolApplet.js/JmolControls.js/JmolApi.js
|
| |
WITH OPTIONAL JmolCD.js (ChemDoodle Canvas and Canvas2D options) and JmolJSV.js (JSpecView)
|
| |
|
| |
SEE http://chemapps.stolaf.edu/jmol/files/JmolCore.js for details
|
| |
SEE http://chemapps.stolaf.edu/jmol/examples-12/simple2.htm for an example
|
| |
|
| |
checkbox heirarchy -- see http://chemapps.stolaf.edu/jmol/docs/examples-11/check.htm
|
|
|
|
| based on:
|
based on:
|
| *
|
*
|
|
Line 30
|
Line 38
|
| try{if(typeof(_jmol)!="undefined")exit()
|
try{if(typeof(_jmol)!="undefined")exit()
|
|
|
|
| // place "?NOAPPLET" on your command line to check applet control action with a textarea
|
// place "?NOAPPLET" on your command line to check applet control action with a textarea
|
| |
// place "?JMOLJAR=xxxxx" to use a specific jar file
|
|
|
|
| // bob hanson -- jmolResize(w,h) -- resizes absolutely or by percent (w or h 0.5 means 50%)
|
// bob hanson -- jmolResize(w,h) -- resizes absolutely or by percent (w or h 0.5 means 50%)
|
| |
// angel herraez -- update of jmolResize(w,h,targetSuffix) so it is not tied to first applet
|
| // bob hanson -- jmolEvaluate -- evaluates molecular math 8:37 AM 2/23/2007
|
// bob hanson -- jmolEvaluate -- evaluates molecular math 8:37 AM 2/23/2007
|
| // bob hanson -- jmolScriptMessage -- returns all "scriptStatus" messages 8:37 AM 2/23/2007
|
// bob hanson -- jmolScriptMessage -- returns all "scriptStatus" messages 8:37 AM 2/23/2007
|
| // bob hanson -- jmolScriptEcho -- returns all "scriptEcho" messages 8:37 AM 2/23/2007
|
// bob hanson -- jmolScriptEcho -- returns all "scriptEcho" messages 8:37 AM 2/23/2007
|
|
Line 45 try{if(typeof(_jmol)!="undefined")exit()
|
Line 55 try{if(typeof(_jmol)!="undefined")exit()
|
| // bob hanson -- fix for iframes not available for finding applet
|
// bob hanson -- fix for iframes not available for finding applet
|
| // bob hanson -- added applet fake ?NOAPPLET URL flag
|
// bob hanson -- added applet fake ?NOAPPLET URL flag
|
| // bob hanson -- added jmolSetCallback(calbackName, funcName) 3:32 PM 6/13/2006
|
// bob hanson -- added jmolSetCallback(calbackName, funcName) 3:32 PM 6/13/2006
|
| // used PRIOR to jmolApplet() or jmolAppletInline()
|
// used PRIOR to jmolApplet() or jmolAppletInline()
|
| // added 4th array element in jmolRadioGroup -- title
|
// added 4th array element in jmolRadioGroup -- title
|
| // added <span> and id around link, checkbox, radio, menu
|
// added <span> and id around link, checkbox, radio, menu
|
| // fixing AJAX loads for MSIE/Opera-Mozilla incompatibility
|
// fixing AJAX loads for MSIE/Opera-Mozilla incompatibility
|
| // -- renamed Jmol-11.js from Jmol-new.js; JmolApplet.jar from JmolAppletProto.jar
|
// -- renamed Jmol-11.js from Jmol-new.js; JmolApplet.jar from JmolAppletProto.jar
|
| // renamed Jmol.js for Jmol 11 distribution
|
// renamed Jmol.js for Jmol 11 distribution
|
| // -- modified jmolRestoreOrientation() to be immediate, no 1-second delay
|
// -- modified jmolRestoreOrientation() to be immediate, no 1-second delay
|
| // bob hanson -- jmolScriptWait always returns a string -- 11:23 AM 9/16/2006
|
// bob hanson -- jmolScriptWait always returns a string -- 11:23 AM 9/16/2006
|
| // bh -- jmolCommandInput()
|
// bh -- jmolCommandInput()
|
| // bh -- jmolSetTranslation(TF) -- forces translation even if there might be message callback issues
|
// bh -- jmolSetTranslation(TF) -- forces translation even if there might be message callback issues
|
| // bh -- minor fixes suggested by Angel
|
// bh -- minor fixes suggested by Angel
|
|
|
// bh -- adds jmolSetSyncId() and jmolGetSyncId()
|
| |
// bh 3/2008 -- adds jmolAppendInlineScript() and jmolAppendInlineArray()
|
| |
// bh 3/2008 -- fixes IE7 bug in relation to jmolLoadInlineArray()
|
| |
// bh 6/2008 -- adds jmolSetAppletWindow()
|
| |
// Angel H. 6/2008 -- added html <label> tags to checkboxes and radio buttons [in jmolCheckbox() and _jmolRadio() functions]
|
| |
// bh 7/2008 -- code fix "for(i..." not "for(var i..."
|
| |
// bh 12/2008 -- jmolLoadInline, jmolLoadInlineArray, jmolLoadInlineScript, jmolAppendInlineScript, jmolAppendInlineArray all return error message or null (Jmol 11.7.16)
|
| |
// bh 12/2008 -- jmolScriptWaitOutput() -- waits for script to complete and delivers output normally sent to console
|
| |
|
| |
// bh 5/2009 -- Support for XHTML using jmolSetXHTML(id)
|
| |
// ah & bh 6/2009 -- New jmolResizeApplet() more flexible, similar to jmolApplet() size syntax
|
| |
// bh 11/2009 -- care in accessing top.document
|
| |
// bh 12/2009 -- added jmolSetParameter(name, value)
|
| |
// bh 12/2009 -- added PARAMS=name:value;name:value;name:value... for command line
|
| |
// bh 12/2009 -- overhaul of target checking
|
| |
// bh 1/2010 -- all _xxxx() methods ALWAYS have complete argument list
|
| |
// bh 1/2010 -- adds option to run a JavaScript function from any Jmol control.
|
| |
// This is accomplished by passing an array rather than a script:
|
| |
// jmolHref([myfunc,"my param 1", "my param 2"], "testing")
|
| |
// function myfunc(jmolControlObject, [myfunc,"my param 1", "my param 2"], target){...}
|
| |
// and allows much more flexibility with responding to controls
|
| |
// bh 4/2010 -- added jmolSetMemoryMb(nMb)
|
| |
// ah 1/2011 -- wider detection of browsers; more browsers now use the object tag instead of the applet tag;
|
| |
// fix of object tag (removed classid) accounts for change of behavior in Chrome
|
| |
// bh 5/2013 -- fix for master checkbox click not actuating checkboxes
|
| |
|
| var defaultdir = "."
|
var defaultdir = "."
|
| var defaultjar = "JmolApplet.jar"
|
var defaultjar = "JmolApplet.jar"
|
|
|
|
| |
|
| |
// Note added 12:41 PM 9/21/2008 by Bob Hanson, hansonr@stolaf.edu:
|
| |
|
| |
// JMOLJAR=xxxxx.jar on the URL for this page will override
|
| |
// the JAR file specified in the jmolInitialize() call.
|
| |
|
| |
// The idea is that it can be very useful to test a web page with different JAR files
|
| |
// Or for an expert user to substitute a signed applet for an unsigned one
|
| |
// so as to use a broader range of models or to create JPEG files, for example.
|
| |
|
| |
// If the JAR file is not in the current directory (has any sort of "/" in its name)
|
| |
// then the user is presented with a warning and asked whether it is OK to change Jar files.
|
| |
// The default action, if the user just presses "OK" is to NOT allow the change.
|
| |
// The user must type the word "yes" in the prompt box for the change to be approved.
|
| |
|
| |
// If you don't want people to be able to switch in their own JAR file on your page,
|
| |
// simply set this next line to read "var allowJMOLJAR = false".
|
| |
|
| |
|
| var undefined; // for IE 5 ... wherein undefined is undefined
|
var undefined; // for IE 5 ... wherein undefined is undefined
|
|
|
|
| ////////////////////////////////////////////////////////////////
|
////////////////////////////////////////////////////////////////
|
|
Line 67 var undefined; // for IE 5 ... wherein u
|
Line 121 var undefined; // for IE 5 ... wherein u
|
| ////////////////////////////////////////////////////////////////
|
////////////////////////////////////////////////////////////////
|
|
|
|
| function jmolInitialize(codebaseDirectory, fileNameOrUseSignedApplet) {
|
function jmolInitialize(codebaseDirectory, fileNameOrUseSignedApplet) {
|
| if (_jmol.initialized) {
|
if (_jmol.initialized)
|
| //alert("jmolInitialize() should only be called *ONCE* within a page");
|
|
| return;
|
return;
|
| |
_jmol.initialized = true;
|
| |
if(_jmol.jmoljar) {
|
| |
var f = _jmol.jmoljar;
|
| |
if (f.indexOf("/") >= 0) {
|
| |
alert ("This web page URL is requesting that the applet used be " + f + ". This is a possible security risk, particularly if the applet is signed, because signed applets can read and write files on your local machine or network.")
|
| |
var ok = prompt("Do you want to use applet " + f + "? ","yes or no")
|
| |
if (ok == "yes") {
|
| |
codebaseDirectory = f.substring(0, f.lastIndexOf("/"));
|
| |
fileNameOrUseSignedApplet = f.substring(f.lastIndexOf("/") + 1);
|
| |
} else {
|
| |
_jmolGetJarFilename(fileNameOrUseSignedApplet);
|
| |
alert("The web page URL was ignored. Continuing using " + _jmol.archivePath + ' in directory "' + codebaseDirectory + '"');
|
| |
}
|
| |
} else {
|
| |
fileNameOrUseSignedApplet = f;
|
| |
}
|
| }
|
}
|
| if (! codebaseDirectory) {
|
|
| alert("codebaseDirectory is a required parameter to jmolInitialize");
|
|
| codebaseDirectory = ".";
|
|
| }
|
|
|
|
|
| if (codebaseDirectory.indexOf("http://") == 0 ||
|
|
| codebaseDirectory.indexOf("https://") == 0)
|
|
| alert("In general, an absolute URL is not recommended for codebaseDirectory.\n" +
|
|
| "A directory- or docroot-relative reference is recommended.\n\n" +
|
|
| "If you need to use an absolute URL (because, for example, the JAR and data\n" +
|
|
| "files are on another server), then insert a space before\n" +
|
|
| "\"http\" in your URL to avoid this warning message.");
|
|
|
|
|
| _jmolSetCodebase(codebaseDirectory);
|
_jmolSetCodebase(codebaseDirectory);
|
| _jmolGetJarFilename(fileNameOrUseSignedApplet);
|
_jmolGetJarFilename(fileNameOrUseSignedApplet);
|
| _jmolOnloadResetForms();
|
_jmolOnloadResetForms();
|
| _jmol.initialized = true;
|
|
| }
|
}
|
|
|
|
| function jmolSetTranslation(TF) {
|
function jmolSetTranslation(TF) {
|
|
Line 120 function jmolSetAppletColor(boxbgcolor,
|
Line 175 function jmolSetAppletColor(boxbgcolor,
|
| " progresscolor=" + _jmol.params.progresscolor);
|
" progresscolor=" + _jmol.params.progresscolor);
|
| }
|
}
|
|
|
|
| |
function jmolSetAppletWindow(w) {
|
| |
_jmol.appletWindow = w;
|
| |
}
|
| |
|
| function jmolApplet(size, script, nameSuffix) {
|
function jmolApplet(size, script, nameSuffix) {
|
| _jmolInitCheck();
|
_jmolInitCheck();
|
| return _jmolApplet(size, null, script, nameSuffix);
|
return _jmolApplet(size, null, script, nameSuffix);
|
|
Line 129 function jmolApplet(size, script, nameSu
|
Line 188 function jmolApplet(size, script, nameSu
|
| // Basic controls
|
// Basic controls
|
| ////////////////////////////////////////////////////////////////
|
////////////////////////////////////////////////////////////////
|
|
|
|
| |
// undefined means it wasn't there; null means it was explicitly listed as null (so as to skip it)
|
| |
|
| function jmolButton(script, label, id, title) {
|
function jmolButton(script, label, id, title) {
|
| _jmolInitCheck();
|
_jmolInitCheck();
|
| if (id == undefined || id == null)
|
id != undefined && id != null || (id = "jmolButton" + _jmol.buttonCount);
|
| id = "jmolButton" + _jmol.buttonCount;
|
label != undefined && label != null || (label = script.substring(0, 32));
|
| if (label == undefined || label == null)
|
|
| label = script.substring(0, 32);
|
|
| ++_jmol.buttonCount;
|
++_jmol.buttonCount;
|
| var scriptIndex = _jmolAddScript(script);
|
var scriptIndex = _jmolAddScript(script);
|
| var t = "<span id=\"span_"+id+"\""+(title ? " title =\"" + title + "\"":"")+"><input type='button' name='" + id + "' id='" + id +
|
var t = "<span id=\"span_"+id+"\""+(title ? " title=\"" + title + "\"":"")+"><input type='button' name='" + id + "' id='" + id +
|
| "' value='" + label +
|
"' value='" + label +
|
| "' onClick='_jmolClick(" + scriptIndex + _jmol.targetText +
|
"' onclick='_jmolClick(this," + scriptIndex + _jmol.targetText +
|
| ")' onMouseover='_jmolMouseOver(" + scriptIndex +
|
")' onmouseover='_jmolMouseOver(" + scriptIndex +
|
| ");return true' onMouseout='_jmolMouseOut()' " +
|
");return true' onmouseout='_jmolMouseOut()' " +
|
| _jmol.buttonCssText + "/></span>";
|
_jmol.buttonCssText + " /></span>";
|
| if (_jmol.debugAlert)
|
if (_jmol.debugAlert)
|
| alert(t);
|
alert(t);
|
| return _jmolDocumentWrite(t);
|
return _jmolDocumentWrite(t);
|
|
Line 151 function jmolButton(script, label, id, t
|
Line 210 function jmolButton(script, label, id, t
|
| function jmolCheckbox(scriptWhenChecked, scriptWhenUnchecked,
|
function jmolCheckbox(scriptWhenChecked, scriptWhenUnchecked,
|
| labelHtml, isChecked, id, title) {
|
labelHtml, isChecked, id, title) {
|
| _jmolInitCheck();
|
_jmolInitCheck();
|
| if (id == undefined || id == null)
|
id != undefined && id != null || (id = "jmolCheckbox" + _jmol.checkboxCount);
|
| id = "jmolCheckbox" + _jmol.checkboxCount;
|
|
| ++_jmol.checkboxCount;
|
++_jmol.checkboxCount;
|
| if (scriptWhenChecked == undefined || scriptWhenChecked == null ||
|
if (scriptWhenChecked == undefined || scriptWhenChecked == null ||
|
| scriptWhenUnchecked == undefined || scriptWhenUnchecked == null) {
|
scriptWhenUnchecked == undefined || scriptWhenUnchecked == null) {
|
|
Line 166 function jmolCheckbox(scriptWhenChecked,
|
Line 224 function jmolCheckbox(scriptWhenChecked,
|
| var indexChecked = _jmolAddScript(scriptWhenChecked);
|
var indexChecked = _jmolAddScript(scriptWhenChecked);
|
| var indexUnchecked = _jmolAddScript(scriptWhenUnchecked);
|
var indexUnchecked = _jmolAddScript(scriptWhenUnchecked);
|
| var eospan = "</span>"
|
var eospan = "</span>"
|
| var t = "<span id=\"span_"+id+"\""+(title ? " title =\"" + title + "\"":"")+"><input type='checkbox' name='" + id + "' id='" + id +
|
var t = "<span id=\"span_"+id+"\""+(title ? " title=\"" + title + "\"":"")+"><input type='checkbox' name='" + id + "' id='" + id +
|
| "' onClick='_jmolCbClick(this," +
|
"' onclick='_jmolCbClick(this," +
|
| indexChecked + "," + indexUnchecked + _jmol.targetText +
|
indexChecked + "," + indexUnchecked + _jmol.targetText +
|
| ")' onMouseover='_jmolCbOver(this," + indexChecked + "," +
|
")' onmouseover='_jmolCbOver(this," + indexChecked + "," +
|
| indexUnchecked +
|
indexUnchecked +
|
| ");return true' onMouseout='_jmolMouseOut()' " +
|
");return true' onmouseout='_jmolMouseOut()' " +
|
| (isChecked ? "checked " : "") + _jmol.checkboxCssText + "/>"
|
(isChecked ? "checked='true' " : "")+ _jmol.checkboxCssText + " />"
|
| if (labelHtml.toLowerCase().indexOf("<td>")>=0) {
|
if (labelHtml.toLowerCase().indexOf("<td>")>=0) {
|
| t += eospan
|
t += eospan
|
| eospan = "";
|
eospan = "";
|
| }
|
}
|
| t += labelHtml +eospan;
|
t += "<label for=\"" + id + "\">" + labelHtml + "</label>" +eospan;
|
| if (_jmol.debugAlert)
|
if (_jmol.debugAlert)
|
| alert(t);
|
alert(t);
|
| return _jmolDocumentWrite(t);
|
return _jmolDocumentWrite(t);
|
|
Line 201 function jmolRadioGroup(arrayOfRadioButt
|
Line 259 function jmolRadioGroup(arrayOfRadioButt
|
| alert("invalid arrayOfRadioButtons");
|
alert("invalid arrayOfRadioButtons");
|
| return;
|
return;
|
| }
|
}
|
| if (separatorHtml == undefined || separatorHtml == null)
|
separatorHtml != undefined && separatorHtml != null || (separatorHtml = " ");
|
| separatorHtml = " ";
|
|
| var len = arrayOfRadioButtons.length;
|
var len = arrayOfRadioButtons.length;
|
| jmolStartNewRadioGroup();
|
jmolStartNewRadioGroup();
|
| if (!groupName)
|
groupName || (groupName = "jmolRadioGroup" + (_jmol.radioGroupCount - 1));
|
| groupName = "jmolRadioGroup" + (_jmol.radioGroupCount - 1);
|
|
| var t = "<span id='"+(id ? id : groupName)+"'>";
|
var t = "<span id='"+(id ? id : groupName)+"'>";
|
| for (var i = 0; i < len; ++i) {
|
for (var i = 0; i < len; ++i) {
|
| if (i == len - 1)
|
if (i == len - 1)
|
|
Line 238 function jmolRadio(script, labelHtml, is
|
Line 294 function jmolRadio(script, labelHtml, is
|
|
|
|
| function jmolLink(script, label, id, title) {
|
function jmolLink(script, label, id, title) {
|
| _jmolInitCheck();
|
_jmolInitCheck();
|
| if (id == undefined || id == null)
|
id != undefined && id != null || (id = "jmolLink" + _jmol.linkCount);
|
| id = "jmolLink" + _jmol.linkCount;
|
label != undefined && label != null || (label = script.substring(0, 32));
|
| if (label == undefined || label == null)
|
|
| label = script.substring(0, 32);
|
|
| ++_jmol.linkCount;
|
++_jmol.linkCount;
|
| var scriptIndex = _jmolAddScript(script);
|
var scriptIndex = _jmolAddScript(script);
|
| var t = "<span id=\"span_"+id+"\""+(title ? " title =\"" + title + "\"":"")+"><a name='" + id + "' id='" + id +
|
var t = "<span id=\"span_"+id+"\""+(title ? " title=\"" + title + "\"":"")+"><a name='" + id + "' id='" + id +
|
| "' href='javascript:_jmolClick(" + scriptIndex + _jmol.targetText + ");' onMouseover='_jmolMouseOver(" + scriptIndex +
|
"' href='javascript:_jmolClick(this," + scriptIndex + _jmol.targetText + ");' onmouseover='_jmolMouseOver(" + scriptIndex +
|
| ");return true;' onMouseout='_jmolMouseOut()' " +
|
");return true;' onmouseout='_jmolMouseOut()' " +
|
| _jmol.linkCssText + ">" + label + "</a></span>";
|
_jmol.linkCssText + ">" + label + "</a></span>";
|
| if (_jmol.debugAlert)
|
if (_jmol.debugAlert)
|
| alert(t);
|
alert(t);
|
|
Line 255 function jmolLink(script, label, id, tit
|
Line 309 function jmolLink(script, label, id, tit
|
|
|
|
| function jmolCommandInput(label, size, id, title) {
|
function jmolCommandInput(label, size, id, title) {
|
| _jmolInitCheck();
|
_jmolInitCheck();
|
| if (id == undefined || id == null)
|
id != undefined && id != null || (id = "jmolCmd" + _jmol.cmdCount);
|
| id = "jmolCmd" + _jmol.cmdCount;
|
label != undefined && label != null || (label = "Execute");
|
| if (label == undefined || label == null)
|
size != undefined && !isNaN(size) || (size = 60);
|
| label = "Execute";
|
|
| if (size == undefined || isNaN(size))
|
|
| size = 60;
|
|
| ++_jmol.cmdCount;
|
++_jmol.cmdCount;
|
| var t = "<span id=\"span_"+id+"\""+(title ? " title =\"" + title + "\"":"")+"><input name='" + id + "' id='" + id +
|
var t = "<span id=\"span_"+id+"\""+(title ? " title=\"" + title + "\"":"")+"><input name='" + id + "' id='" + id +
|
| "' size='"+size+"'><input type=button value = '"+label+"' onClick='jmolScript(document.getElementById(\""+id+"\").value" + _jmol.targetText + ")'/></span>";
|
"' size='"+size+"' onkeypress='_jmolCommandKeyPress(event,\""+id+"\"" + _jmol.targetText + ")'><input type=button value = '"+label+"' onclick='jmolScript(document.getElementById(\""+id+"\").value" + _jmol.targetText + ")' /></span>";
|
| if (_jmol.debugAlert)
|
if (_jmol.debugAlert)
|
| alert(t);
|
alert(t);
|
| return _jmolDocumentWrite(t);
|
return _jmolDocumentWrite(t);
|
| }
|
}
|
|
|
|
| |
function _jmolCommandKeyPress(e, id, target) {
|
| |
var keycode = (window.event ? window.event.keyCode : e ? e.which : 0);
|
| |
if (keycode == 13) {
|
| |
var inputBox = document.getElementById(id)
|
| |
_jmolScriptExecute(inputBox, inputBox.value, target)
|
| |
}
|
| |
}
|
| |
|
| |
function _jmolScriptExecute(element,script,target) {
|
| |
if (typeof(script) == "object")
|
| |
script[0](element, script, target)
|
| |
else if (typeof(script) == "function")
|
| |
script(target);
|
| |
else
|
| |
jmolScript(script, target)
|
| |
}
|
| |
|
| function jmolMenu(arrayOfMenuItems, size, id, title) {
|
function jmolMenu(arrayOfMenuItems, size, id, title) {
|
| _jmolInitCheck();
|
_jmolInitCheck();
|
| if (id == undefined || id == null)
|
id != undefined && id != null || (id = "jmolMenu" + _jmol.menuCount);
|
| id = "jmolMenu" + _jmol.menuCount;
|
|
| ++_jmol.menuCount;
|
++_jmol.menuCount;
|
| var type = typeof arrayOfMenuItems;
|
var type = typeof arrayOfMenuItems;
|
| if (type != null && type == "object" && arrayOfMenuItems.length) {
|
if (type != null && type == "object" && arrayOfMenuItems.length) {
|
|
Line 282 function jmolMenu(arrayOfMenuItems, size
|
Line 349 function jmolMenu(arrayOfMenuItems, size
|
| else if (size < 0)
|
else if (size < 0)
|
| size = len;
|
size = len;
|
| var sizeText = size ? " size='" + size + "' " : "";
|
var sizeText = size ? " size='" + size + "' " : "";
|
| var t = "<span id=\"span_"+id+"\""+(title ? " title =\"" + title + "\"":"")+"><select name='" + id + "' id='" + id +
|
var t = "<span id=\"span_"+id+"\""+(title ? " title=\"" + title + "\"":"")+"><select name='" + id + "' id='" + id +
|
| "' onChange='_jmolMenuSelected(this" + _jmol.targetText + ")'" +
|
"' onChange='_jmolMenuSelected(this" + _jmol.targetText + ")'" +
|
| sizeText + _jmol.menuCssText + ">";
|
sizeText + _jmol.menuCssText + ">";
|
| for (var i = 0; i < len; ++i) {
|
for (var i = 0; i < len; ++i) {
|
|
Line 297 function jmolMenu(arrayOfMenuItems, size
|
Line 364 function jmolMenu(arrayOfMenuItems, size
|
| } else {
|
} else {
|
| script = text = menuItem;
|
script = text = menuItem;
|
| }
|
}
|
| if (text == undefined || text == null)
|
text != undefined && text != null || (text = script);
|
| text = script;
|
if (script=="#optgroup") {
|
| if (script=="#optgroup") {
|
t += "<optgroup label='" + text + "'>";
|
| t += "<optgroup label='" + text + "'>";
|
} else if (script=="#optgroupEnd") {
|
| } else if (script=="#optgroupEnd") {
|
t += "</optgroup>";
|
| t += "</optgroup>";
|
} else {
|
| } else {
|
|
| var scriptIndex = _jmolAddScript(script);
|
var scriptIndex = _jmolAddScript(script);
|
| var selectedText = isSelected ? "' selected>" : "'>";
|
var selectedText = isSelected ? "' selected='true'>" : "'>";
|
| t += "<option value='" + scriptIndex + selectedText + text + "</option>";
|
t += "<option value='" + scriptIndex + selectedText + text + "</option>";
|
| }
|
}
|
| }
|
}
|
| t += "</select></span>";
|
t += "</select></span>";
|
| if (_jmol.debugAlert)
|
if (_jmol.debugAlert)
|
|
Line 340 function jmolAppletInline(size, inlineMo
|
Line 406 function jmolAppletInline(size, inlineMo
|
|
|
|
| function jmolSetTarget(targetSuffix) {
|
function jmolSetTarget(targetSuffix) {
|
| _jmol.targetSuffix = targetSuffix;
|
_jmol.targetSuffix = targetSuffix;
|
| _jmol.targetText = targetSuffix ? ",\"" + targetSuffix + "\"" : "";
|
_jmol.targetText = targetSuffix ? ",\"" + targetSuffix + "\"" : ",0";
|
| }
|
}
|
|
|
|
| function jmolScript(script, targetSuffix) {
|
function jmolScript(script, targetSuffix) {
|
|
Line 348 function jmolScript(script, targetSuffix
|
Line 414 function jmolScript(script, targetSuffix
|
| _jmolCheckBrowser();
|
_jmolCheckBrowser();
|
| if (targetSuffix == "all") {
|
if (targetSuffix == "all") {
|
| with (_jmol) {
|
with (_jmol) {
|
| for (var i = 0; i < appletSuffixes.length; ++i) {
|
for (var i = 0; i < appletSuffixes.length; ++i) {
|
| var applet = _jmolGetApplet(appletSuffixes[i]);
|
var applet = _jmolGetApplet(appletSuffixes[i]);
|
| if (applet) applet.script(script);
|
if (applet) applet.script(script);
|
| }
|
}
|
| }
|
}
|
|
Line 361 function jmolScript(script, targetSuffix
|
Line 427 function jmolScript(script, targetSuffix
|
| }
|
}
|
|
|
|
| function jmolLoadInline(model, targetSuffix) {
|
function jmolLoadInline(model, targetSuffix) {
|
| if (!model)return
|
if (!model)return "ERROR: NO MODEL"
|
| var applet=_jmolGetApplet(targetSuffix);
|
var applet=_jmolGetApplet(targetSuffix);
|
| if (applet)applet.loadInline(model);
|
if (!applet)return "ERROR: NO APPLET"
|
| |
if (typeof(model) == "string")
|
| |
return applet.loadInlineString(model, "", false);
|
| |
else
|
| |
return applet.loadInlineArray(model, "", false);
|
| }
|
}
|
|
|
|
| |
|
| function jmolLoadInlineScript(model, script, targetSuffix) {
|
function jmolLoadInlineScript(model, script, targetSuffix) {
|
| if (!model)return
|
if (!model)return "ERROR: NO MODEL"
|
| var applet=_jmolGetApplet(targetSuffix);
|
var applet=_jmolGetApplet(targetSuffix);
|
| if (applet)applet.loadInline(model, script);
|
if (!applet)return "ERROR: NO APPLET"
|
| |
return applet.loadInlineString(model, script, false);
|
| }
|
}
|
|
|
|
| |
|
| function jmolLoadInlineArray(ModelArray, script, targetSuffix) {
|
function jmolLoadInlineArray(ModelArray, script, targetSuffix) {
|
| if (!model)return
|
if (!model)return "ERROR: NO MODEL"
|
| if (!script)script=""
|
script || (script="")
|
| |
var applet=_jmolGetApplet(targetSuffix);
|
| |
if (!applet)return "ERROR: NO APPLET"
|
| |
try {
|
| |
return applet.loadInlineArray(ModelArray, script, false);
|
| |
} catch (err) {
|
| |
//IE 7 bug
|
| |
return applet.loadInlineString(ModelArray.join("\n"), script, false);
|
| |
}
|
| |
}
|
| |
|
| |
function jmolAppendInlineArray(ModelArray, script, targetSuffix) {
|
| |
if (!model)return "ERROR: NO MODEL"
|
| |
script || (script="")
|
| |
var applet=_jmolGetApplet(targetSuffix);
|
| |
if (!applet)return "ERROR: NO APPLET"
|
| |
try {
|
| |
return applet.loadInlineArray(ModelArray, script, true);
|
| |
} catch (err) {
|
| |
//IE 7 bug
|
| |
return applet.loadInlineString(ModelArray.join("\n"), script, true);
|
| |
}
|
| |
}
|
| |
|
| |
function jmolAppendInlineScript(model, script, targetSuffix) {
|
| |
if (!model)return "ERROR: NO MODEL"
|
| var applet=_jmolGetApplet(targetSuffix);
|
var applet=_jmolGetApplet(targetSuffix);
|
| if (applet)applet.loadInlineArray(ModelArray, script);
|
if (!applet)return "ERROR: NO APPLET"
|
| |
return applet.loadInlineString(model, script, true);
|
| }
|
}
|
|
|
|
| function jmolCheckBrowser(action, urlOrMessage, nowOrLater) {
|
function jmolCheckBrowser(action, urlOrMessage, nowOrLater) {
|
| if (typeof action == "string") {
|
if (typeof action == "string") {
|
| action = action.toLowerCase();
|
action = action.toLowerCase();
|
| if (action != "alert" && action != "redirect" && action != "popup")
|
action == "alert" || action == "redirect" || action == "popup" || (action = null);
|
| action = null;
|
|
| }
|
}
|
| if (typeof action != "string")
|
if (typeof action != "string")
|
| alert("jmolCheckBrowser(action, urlOrMessage, nowOrLater)\n\n" +
|
alert("jmolCheckBrowser(action, urlOrMessage, nowOrLater)\n\n" +
|
|
Line 455 var _jmol = {
|
Line 553 var _jmol = {
|
| currentDocument: document,
|
currentDocument: document,
|
|
|
|
| debugAlert: false,
|
debugAlert: false,
|
|
|
|
| codebase: ".",
|
codebase: "",
|
| modelbase: ".",
|
modelbase: ".",
|
|
|
|
| appletCount: 0,
|
appletCount: 0,
|
| appletSuffixes: [],
|
appletSuffixes: [],
|
|
|
appletWindow: null,
|
| |
allowedJmolSize: [25, 2048, 300], // min, max, default (pixels)
|
| |
/* By setting the _jmol.allowedJmolSize[] variable in the webpage
|
| |
before calling jmolApplet(), limits for applet size can be overriden.
|
| |
2048 standard for GeoWall (http://geowall.geo.lsa.umich.edu/home.html)
|
| |
*/
|
| buttonCount: 0,
|
buttonCount: 0,
|
| checkboxCount: 0,
|
checkboxCount: 0,
|
| linkCount: 0,
|
linkCount: 0,
|
|
Line 469 var _jmol = {
|
Line 572 var _jmol = {
|
| menuCount: 0,
|
menuCount: 0,
|
| radioCount: 0,
|
radioCount: 0,
|
| radioGroupCount: 0,
|
radioGroupCount: 0,
|
|
|
|
| appletCssClass: null,
|
appletCssClass: null,
|
| appletCssText: "",
|
appletCssText: "",
|
| buttonCssClass: null,
|
buttonCssClass: null,
|
| buttonCssText: "",
|
buttonCssText: "",
|
| checkboxCssClass: null,
|
checkboxCssClass: null,
|
| checkboxCssText: "",
|
checkboxCssText: "",
|
| |
java_arguments: "-Xmx512m",
|
| radioCssClass: null,
|
radioCssClass: null,
|
| radioCssText: "",
|
radioCssText: "",
|
| linkCssClass: null,
|
linkCssClass: null,
|
| linkCssText: "",
|
linkCssText: "",
|
| menuCssClass: null,
|
menuCssClass: null,
|
| menuCssText: "",
|
menuCssText: "",
|
|
|
|
| targetSuffix: 0,
|
targetSuffix: 0,
|
| targetText: "",
|
targetText: ",0",
|
| scripts: [""],
|
scripts: [""],
|
| params: {
|
params: {
|
| progressbar: "true",
|
syncId: ("" + Math.random()).substring(3),
|
| progresscolor: "blue",
|
progressbar: "true",
|
| boxbgcolor: "black",
|
progresscolor: "blue",
|
| boxfgcolor: "white",
|
boxbgcolor: "black",
|
| boxmessage: "Downloading JmolApplet ..."
|
boxfgcolor: "white",
|
| |
boxmessage: "Downloading JmolApplet ..."
|
| },
|
},
|
| ua: navigator.userAgent.toLowerCase(),
|
ua: navigator.userAgent.toLowerCase(),
|
| uaVersion: parseFloat(navigator.appVersion),
|
// uaVersion: parseFloat(navigator.appVersion), // not used
|
|
|
|
| os: "unknown",
|
os: "unknown",
|
| browser: "unknown",
|
browser: "unknown",
|
| browserVersion: 0,
|
browserVersion: 0,
|
| hasGetElementById: !!document.getElementById,
|
hasGetElementById: !!document.getElementById,
|
| isJavaEnabled: navigator.javaEnabled(),
|
isJavaEnabled: navigator.javaEnabled(),
|
| isNetscape47Win: false,
|
// isNetscape47Win: false, // not used, N4.7 is no longer supported even for detection
|
| isIEWin: false,
|
|
| useIEObject: false,
|
useIEObject: false,
|
| useHtml4Object: false,
|
useHtml4Object: false,
|
|
|
|
| windowsClassId: "clsid:8AD9C840-044E-11D1-B3E9-00805F499D93",
|
windowsClassId: "clsid:8AD9C840-044E-11D1-B3E9-00805F499D93",
|
| windowsCabUrl:
|
windowsCabUrl:
|
| "http://java.sun.com/update/1.5.0/jinstall-1_5_0_05-windows-i586.cab",
|
"http://java.sun.com/update/1.6.0/jinstall-6u22-windows-i586.cab",
|
|
|
|
| isBrowserCompliant: false,
|
isBrowserCompliant: false,
|
| isJavaCompliant: false,
|
isJavaCompliant: false,
|
|
Line 516 var _jmol = {
|
Line 620 var _jmol = {
|
|
|
|
| initialized: false,
|
initialized: false,
|
| initChecked: false,
|
initChecked: false,
|
|
|
|
| browserChecked: false,
|
browserChecked: false,
|
| checkBrowserAction: "alert",
|
checkBrowserAction: "alert",
|
| checkBrowserUrlOrMessage: null,
|
checkBrowserUrlOrMessage: null,
|
|
Line 524 var _jmol = {
|
Line 628 var _jmol = {
|
| archivePath: null, // JmolApplet0.jar OR JmolAppletSigned0.jar
|
archivePath: null, // JmolApplet0.jar OR JmolAppletSigned0.jar
|
|
|
|
| previousOnloadHandler: null,
|
previousOnloadHandler: null,
|
| |
|
| |
jmoljar: null,
|
| |
useNoApplet: false,
|
| |
|
| ready: {}
|
ready: {}
|
| }
|
}
|
|
|
|
| with (_jmol) {
|
with (_jmol) {
|
|
|
|
| function _jmolTestUA(candidate) {
|
function _jmolTestUA(candidate) {
|
| var ua = _jmol.ua;
|
var ua = _jmol.ua;
|
| var index = ua.indexOf(candidate);
|
var index = ua.indexOf(candidate);
|
|
Line 538 with (_jmol) {
|
Line 645 with (_jmol) {
|
| _jmol.browserVersion = parseFloat(ua.substring(index+candidate.length+1));
|
_jmol.browserVersion = parseFloat(ua.substring(index+candidate.length+1));
|
| return true;
|
return true;
|
| }
|
}
|
|
|
|
| function _jmolTestOS(candidate) {
|
function _jmolTestOS(candidate) {
|
| if (_jmol.ua.indexOf(candidate) < 0)
|
if (_jmol.ua.indexOf(candidate) < 0)
|
| return false;
|
return false;
|
| _jmol.os = candidate;
|
_jmol.os = candidate;
|
| return true;
|
return true;
|
| }
|
}
|
|
|
|
| _jmolTestUA("konqueror") ||
|
_jmolTestUA("konqueror") ||
|
| _jmolTestUA("safari") ||
|
_jmolTestUA("webkit") ||
|
| _jmolTestUA("omniweb") ||
|
_jmolTestUA("omniweb") ||
|
| _jmolTestUA("opera") ||
|
_jmolTestUA("opera") ||
|
| _jmolTestUA("webtv") ||
|
_jmolTestUA("webtv") ||
|
| _jmolTestUA("icab") ||
|
_jmolTestUA("icab") ||
|
| _jmolTestUA("msie") ||
|
_jmolTestUA("msie") ||
|
| (_jmol.ua.indexOf("compatible") < 0 && _jmolTestUA("mozilla"));
|
(_jmol.ua.indexOf("compatible") < 0 && _jmolTestUA("mozilla")); //Netscape, Mozilla, Seamonkey, Firefox and anything assimilated
|
|
|
|
| _jmolTestOS("linux") ||
|
_jmolTestOS("linux") ||
|
| _jmolTestOS("unix") ||
|
_jmolTestOS("unix") ||
|
| _jmolTestOS("mac") ||
|
_jmolTestOS("mac") ||
|
| _jmolTestOS("win");
|
_jmolTestOS("win");
|
|
|
|
| isNetscape47Win = (os == "win" && browser == "mozilla" &&
|
isBrowserCompliant = hasGetElementById;
|
| browserVersion >= 4.78 && browserVersion <= 4.8);
|
// known exceptions (old browsers):
|
|
|
if (browser == "opera" && browserVersion <= 7.54 && os == "mac"
|
| if (os == "win") {
|
|| browser == "webkit" && browserVersion < 125.12
|
| isBrowserCompliant = hasGetElementById;
|
|| browser == "msie" && os == "mac"
|
| } else if (os == "mac") { // mac is the problem child :-(
|
|| browser == "konqueror" && browserVersion <= 3.3
|
| if (browser == "mozilla" && browserVersion >= 5) {
|
) {
|
| // miguel 2004 11 17
|
isBrowserCompliant = false;
|
| // checking the plugins array does not work because
|
|
| // Netscape 7.2 OS X still has Java 1.3.1 listed even though
|
|
| // javaplugin.sf.net is installed to upgrade to 1.4.2
|
|
| eval("try {var v = java.lang.System.getProperty('java.version');" +
|
|
| " _jmol.isBrowserCompliant = v >= '1.4.2';" +
|
|
| " } catch (e) { }");
|
|
| } else if (browser == "opera" && browserVersion <= 7.54) {
|
|
| isBrowserCompliant = false;
|
|
| } else {
|
|
| isBrowserCompliant = hasGetElementById &&
|
|
| !((browser == "msie") ||
|
|
| (browser == "safari" && browserVersion < 125.12));
|
|
| }
|
|
| } else if (os == "linux" || os == "unix") {
|
|
| if (browser == "konqueror" && browserVersion <= 3.3)
|
|
| isBrowserCompliant = false;
|
|
| else
|
|
| isBrowserCompliant = hasGetElementById;
|
|
| } else { // other OS
|
|
| isBrowserCompliant = hasGetElementById;
|
|
| }
|
}
|
|
|
|
| // possibly more checks in the future for this
|
// possibly more checks in the future for this
|
|
Line 595 with (_jmol) {
|
Line 682 with (_jmol) {
|
|
|
|
| isFullyCompliant = isBrowserCompliant && isJavaCompliant;
|
isFullyCompliant = isBrowserCompliant && isJavaCompliant;
|
|
|
|
| // IE5.5 works just fine ... but let's push them to Sun Java
|
useIEObject = (os == "win" && browser == "msie" && browserVersion >= 5.5);
|
| isIEWin = (os == "win" && browser == "msie" && browserVersion >= 5.5);
|
|
| useIEObject = isIEWin;
|
|
| useHtml4Object =
|
useHtml4Object =
|
| (os != "mac" && browser == "mozilla" && browserVersion >= 5) ||
|
(browser == "mozilla" && browserVersion >= 5) ||
|
| (os == "win" && browser == "opera" && browserVersion >= 8) ||
|
(browser == "opera" && browserVersion >= 8) ||
|
| (os == "mac" && browser == "safari" && browserVersion >= 412.2);
|
(browser == "webkit" && browserVersion >= 412.2);
|
| |
try {
|
| |
if (top.location.search.indexOf("JMOLJAR=")>=0)
|
| |
jmoljar = top.location.search.split("JMOLJAR=")[1].split("&")[0];
|
| |
} catch(e) {
|
| |
// can't access top.location
|
| |
}
|
| |
try {
|
| |
useNoApplet = (top.location.search.indexOf("NOAPPLET")>=0);
|
| |
} catch(e) {
|
| |
// can't access top.document
|
| |
}
|
| |
}
|
| |
|
| |
function jmolSetMemoryMb(nMb) {
|
| |
_jmol.java_arguments = "-Xmx" + Math.round(nMb) + "m"
|
| |
}
|
|
|
|
| doTranslate = true;
|
function jmolSetParameter(name,value) {
|
| haveSetTranslate = false;
|
_jmol.params[name] = value
|
| }
|
}
|
|
|
|
| function jmolSetCallback(callbackName,funcName) {
|
function jmolSetCallback(callbackName,funcName) {
|
| _jmol.params[callbackName] = funcName
|
_jmol.params[callbackName] = funcName
|
| }
|
}
|
|
|
|
| |
try {
|
| |
// note this is done FIRST, so it cannot override a setting done by the developer
|
| |
if (top.location.search.indexOf("PARAMS=")>=0) {
|
| |
var pars = unescape(top.location.search.split("PARAMS=")[1].split("&")[0]).split(";");
|
| |
for (var i = 0; i < pars.length; i++) {
|
| |
var p = pars[i].split(":");
|
| |
jmolSetParameter(p[0],p[1]);
|
| |
}
|
| |
}
|
| |
} catch(e) {
|
| |
// can't access top.location
|
| |
}
|
| |
|
| |
function jmolSetSyncId(n) {
|
| |
return _jmol.params["syncId"] = n
|
| |
}
|
| |
|
| |
function jmolGetSyncId() {
|
| |
return _jmol.params["syncId"]
|
| |
}
|
| |
|
| function jmolSetLogLevel(n) {
|
function jmolSetLogLevel(n) {
|
| _jmol.params.logLevel = ''+n;
|
_jmol.params.logLevel = ''+n;
|
| }
|
}
|
|
|
|
| /* AngelH, mar2007:
|
/* AngelH, mar2007:
|
| By (re)setting these variables in the webpage before calling jmolApplet(),
|
By (re)setting these variables in the webpage before calling jmolApplet(),
|
| a custom message can be provided (e.g. localized for user's language) when no Java is installed.
|
a custom message can be provided (e.g. localized for user's language) when no Java is installed.
|
| */
|
*/
|
| if (noJavaMsg==undefined) var noJavaMsg =
|
if (noJavaMsg==undefined) var noJavaMsg =
|
| "You do not have Java applets enabled in your web browser, or your browser is blocking this applet.<br />\n" +
|
"You do not have Java applets enabled in your web browser, or your browser is blocking this applet.<br />\n" +
|
| "Check the warning message from your browser and/or enable Java applets in<br />\n" +
|
"Check the warning message from your browser and/or enable Java applets in<br />\n" +
|
| "your web browser preferences, or install the Java Runtime Environment from <a href='http://www.java.com'>www.java.com</a><br />";
|
"your web browser preferences, or install the Java Runtime Environment from <a href='http://www.java.com'>www.java.com</a><br />";
|
| if (noJavaMsg2==undefined) var noJavaMsg2 =
|
if (noJavaMsg2==undefined) var noJavaMsg2 =
|
| "You do not have the<br />\n" +
|
"You do not have the<br />\n" +
|
| "Java Runtime Environment<br />\n" +
|
"Java Runtime Environment<br />\n" +
|
| "installed for applet support.<br />\n" +
|
"installed for applet support.<br />\n" +
|
| "Visit <a href='http://www.java.com'>www.java.com</a>";
|
"Visit <a href='http://www.java.com'>www.java.com</a>";
|
| function _jmolApplet(size, inlineModel, script, nameSuffix) {
|
function _jmolApplet(size, inlineModel, script, nameSuffix) {
|
| /* AngelH, mar2007
|
/* AngelH, mar2007
|
| Fixed percent / pixel business, to avoid browser errors:
|
Fixed percent / pixel business, to avoid browser errors:
|
| put "px" where needed, avoid where not.
|
put "px" where needed, avoid where not.
|
| */
|
|
| |
Bob Hanson, 1/2010
|
| |
Fixed inline escape changing returns to |
|
| |
*/
|
| with (_jmol) {
|
with (_jmol) {
|
| if (! nameSuffix)
|
nameSuffix == undefined && (nameSuffix = appletCount);
|
| nameSuffix = appletCount;
|
|
| appletSuffixes.push(nameSuffix);
|
appletSuffixes.push(nameSuffix);
|
| ++appletCount;
|
++appletCount;
|
| if (! script)
|
script || (script = "select *");
|
| script = "select *";
|
|
| var sz = _jmolGetAppletSize(size);
|
var sz = _jmolGetAppletSize(size);
|
| var widthAndHeight = " width='" + sz[0] + "' height='" + sz[1] + "' ";
|
var widthAndHeight = " width='" + sz[0] + "' height='" + sz[1] + "' ";
|
| var tHeader, tFooter;
|
var tHeader, tFooter;
|
|
|
codebase || jmolInitialize(".");
|
| |
params.name = "jmolApplet" + nameSuffix
|
| |
params.permissions = (archivePath.indexOf("Signed") >= 0 ? "all-permissions" : "sandbox");
|
| |
|
| if (useIEObject || useHtml4Object) {
|
if (useIEObject || useHtml4Object) {
|
| params.name = 'jmolApplet' + nameSuffix;
|
|
| params.archive = archivePath;
|
params.archive = archivePath;
|
| params.mayscript = 'true';
|
params.mayscript = 'true';
|
| params.codebase = codebase;
|
params.codebase = codebase;
|
| }
|
params.code = 'JmolApplet.class';
|
| if (useIEObject) { // use MSFT IE6 object tag with .cab file reference
|
tHeader =
|
| winCodebase = (windowsCabUrl ? " codebase='" + windowsCabUrl + "'\n" : "");
|
|
| tHeader =
|
|
| "<object name='jmolApplet" + nameSuffix +
|
"<object name='jmolApplet" + nameSuffix +
|
| "' id='jmolApplet" + nameSuffix + "' " + appletCssText + "\n" +
|
"' id='jmolApplet" + nameSuffix + "' " + appletCssText + "\n" +
|
| " classid='" + windowsClassId + "'\n" + winCodebase + widthAndHeight + ">\n";
|
widthAndHeight + "\n";
|
| params.code = 'JmolApplet';
|
|
| tFooter = "</object>";
|
tFooter = "</object>";
|
| |
}
|
| |
if (java_arguments)
|
| |
params.java_arguments = java_arguments;
|
| |
if (useIEObject) { // use MSFT IE6 object tag with .cab file reference
|
| |
tHeader += " classid='" + windowsClassId + "'\n" +
|
| |
(windowsCabUrl ? " codebase='" + windowsCabUrl + "'\n" : "") + ">\n";
|
| } else if (useHtml4Object) { // use HTML4 object tag
|
} else if (useHtml4Object) { // use HTML4 object tag
|
| tHeader =
|
tHeader += " type='application/x-java-applet'\n>\n";
|
| "<object name='jmolApplet" + nameSuffix +
|
/* " classid='java:JmolApplet'\n" + AH removed this
|
| "' id='jmolApplet" + nameSuffix + "' " + appletCssText + "\n" +
|
Chromium Issue 62076: Java Applets using an <object> with a classid paramater don't load.
|
| " classid='java:JmolApplet'\n" +
|
http://code.google.com/p/chromium/issues/detail?id=62076
|
| " type='application/x-java-applet'\n" +
|
They say this is the correct behavior according to the spec, and there's no indication at this point
|
| widthAndHeight + ">\n";
|
that WebKit will be changing the handling, so eventually Safari will acquire this behavior too.
|
| tFooter = "</object>";
|
Removing the classid parameter seems to be well tolerated by all browsers (even IE!).
|
| |
*/
|
| } else { // use applet tag
|
} else { // use applet tag
|
| tHeader =
|
tHeader =
|
| "<applet name='jmolApplet" + nameSuffix +
|
"<applet name='jmolApplet" + nameSuffix +
|
| "' id='jmolApplet" + nameSuffix +
|
"' id='jmolApplet" + nameSuffix + "' " + appletCssText + "\n" +
|
| "' " + appletCssText +
|
widthAndHeight + "\n" +
|
| " code='JmolApplet'" +
|
" code='JmolApplet'" +
|
| " archive='" + archivePath + "' codebase='" + codebase + "'\n" +
|
" archive='" + archivePath + "' codebase='" + codebase + "'\n" +
|
| widthAndHeight +
|
|
| " mayscript='true'>\n";
|
" mayscript='true'>\n";
|
| tFooter = "</applet>";
|
tFooter = "</applet>";
|
| }
|
}
|
| var visitJava;
|
var visitJava;
|
| if (isIEWin || useHtml4Object) {
|
if (useIEObject || useHtml4Object) {
|
| var szX = "width:" + sz[0]
|
var szX = "width:" + sz[0]
|
| if ( szX.indexOf("%")==-1 ) szX+="px"
|
if ( szX.indexOf("%")==-1 ) szX+="px"
|
| var szY = "height:" + sz[1]
|
var szY = "height:" + sz[1]
|
| if ( szY.indexOf("%")==-1 ) szY+="px"
|
if ( szY.indexOf("%")==-1 ) szY+="px"
|
| visitJava =
|
visitJava =
|
| "<p style='background-color:yellow; color:black; " +
|
"<p style='background-color:yellow; color:black; " +
|
| szX + ";" + szY + ";" +
|
szX + ";" + szY + ";" +
|
| // why doesn't this vertical-align work?
|
// why doesn't this vertical-align work?
|
| "text-align:center;vertical-align:middle;'>\n" +
|
"text-align:center;vertical-align:middle;'>\n" +
|
| noJavaMsg +
|
noJavaMsg +
|
| "</p>";
|
"</p>";
|
| } else {
|
} else {
|
| visitJava =
|
visitJava =
|
| "<table bgcolor='yellow'><tr>" +
|
"<table bgcolor='yellow'><tr>" +
|
| "<td align='center' valign='middle' " + widthAndHeight + "><font color='black'>\n" +
|
"<td align='center' valign='middle' " + widthAndHeight + "><font color='black'>\n" +
|
| noJavaMsg2 +
|
noJavaMsg2 +
|
| "</font></td></tr></table>";
|
"</font></td></tr></table>";
|
| }
|
}
|
| params.loadInline = (inlineModel ? inlineModel : "");
|
params.loadInline = (inlineModel ? inlineModel : "");
|
|
Line 710 function _jmolApplet(size, inlineModel,
|
Line 838 function _jmolApplet(size, inlineModel,
|
|
|
|
| function _jmolParams() {
|
function _jmolParams() {
|
| var t = "";
|
var t = "";
|
| for (i in _jmol.params)
|
for (var i in _jmol.params)
|
| if(_jmol.params[i]!="")
|
if(_jmol.params[i]!="")
|
| t+=" <param name='"+i+"' value='"+_jmol.params[i]+"' />\n";
|
t+=" <param name='"+i+"' value='"+_jmol.params[i]+"' />\n";
|
| return t
|
return t
|
| }
|
}
|
|
|
|
|
Line 720 function _jmolInitCheck() {
|
Line 848 function _jmolInitCheck() {
|
| if (_jmol.initChecked)
|
if (_jmol.initChecked)
|
| return;
|
return;
|
| _jmol.initChecked = true;
|
_jmol.initChecked = true;
|
| if (_jmol.initialized)
|
|
| return;
|
|
| jmolInitialize(defaultdir, defaultjar)
|
jmolInitialize(defaultdir, defaultjar)
|
| }
|
}
|
|
|
|
|
Line 730 function _jmolCheckBrowser() {
|
Line 856 function _jmolCheckBrowser() {
|
| if (browserChecked)
|
if (browserChecked)
|
| return;
|
return;
|
| browserChecked = true;
|
browserChecked = true;
|
|
|
|
| if (isFullyCompliant)
|
if (isFullyCompliant)
|
| return true;
|
return true;
|
|
|
|
|
Line 745 function _jmolCheckBrowser() {
|
Line 871 function _jmolCheckBrowser() {
|
| "browser: " + browser +
|
"browser: " + browser +
|
| " version: " + browserVersion +
|
" version: " + browserVersion +
|
| " os: " + os +
|
" os: " + os +
|
| |
" isBrowserCompliant: " + isBrowserCompliant +
|
| |
" isJavaCompliant: " + isJavaCompliant +
|
| "\n\n" + ua;
|
"\n\n" + ua;
|
| alert(msg);
|
alert(msg);
|
| }
|
}
|
|
Line 752 function _jmolCheckBrowser() {
|
Line 880 function _jmolCheckBrowser() {
|
| return false;
|
return false;
|
| }
|
}
|
|
|
|
| |
function jmolSetXHTML(id) {
|
| |
_jmol.isXHTML = true
|
| |
_jmol.XhtmlElement = null
|
| |
_jmol.XhtmlAppendChild = false
|
| |
if (id){
|
| |
_jmol.XhtmlElement = document.getElementById(id)
|
| |
_jmol.XhtmlAppendChild = true
|
| |
}
|
| |
}
|
| |
|
| function _jmolDocumentWrite(text) {
|
function _jmolDocumentWrite(text) {
|
| if (_jmol.currentDocument)
|
if (_jmol.currentDocument) {
|
| _jmol.currentDocument.write(text);
|
if (_jmol.isXHTML && !_jmol.XhtmlElement) {
|
| |
var s = document.getElementsByTagName("script")
|
| |
_jmol.XhtmlElement = s.item(s.length - 1)
|
| |
_jmol.XhtmlAppendChild = false
|
| |
}
|
| |
if (_jmol.XhtmlElement) {
|
| |
_jmolDomDocumentWrite(text)
|
| |
} else {
|
| |
_jmol.currentDocument.write(text);
|
| |
}
|
| |
}
|
| return text;
|
return text;
|
| }
|
}
|
|
|
|
| |
function _jmolDomDocumentWrite(data) {
|
| |
var pt = 0
|
| |
var Ptr = []
|
| |
Ptr[0] = 0
|
| |
while (Ptr[0] < data.length) {
|
| |
var child = _jmolGetDomElement(data, Ptr)
|
| |
if (!child)break
|
| |
if (_jmol.XhtmlAppendChild)
|
| |
_jmol.XhtmlElement.appendChild(child)
|
| |
else
|
| |
_jmol.XhtmlElement.parentNode.insertBefore(child, _jmol.XhtmlElement);
|
| |
}
|
| |
}
|
| |
function _jmolGetDomElement(data, Ptr, closetag, lvel) {
|
| |
var e = document.createElement("span")
|
| |
e.innerHTML = data
|
| |
Ptr[0] = data.length
|
| |
return e
|
| |
|
| |
//unnecessary?
|
| |
|
| |
closetag || (closetag = "")
|
| |
lvel || (lvel = 0)
|
| |
var pt0 = Ptr[0]
|
| |
var pt = pt0
|
| |
while (pt < data.length && data.charAt(pt) != "<") pt++
|
| |
if (pt != pt0) {
|
| |
var text = data.substring(pt0, pt)
|
| |
Ptr[0] = pt
|
| |
return document.createTextNode(text)
|
| |
}
|
| |
pt0 = ++pt
|
| |
var ch
|
| |
while (pt < data.length && "\n\r\t >".indexOf(ch = data.charAt(pt)) < 0) pt++
|
| |
var tagname = data.substring(pt0, pt)
|
| |
var e = (tagname == closetag || tagname == "/" ? ""
|
| |
: document.createElementNS ? document.createElementNS('http://www.w3.org/1999/xhtml', tagname)
|
| |
: document.createElement(tagname));
|
| |
if (ch == ">") {
|
| |
Ptr[0] = ++pt
|
| |
return e
|
| |
}
|
| |
while (pt < data.length && (ch = data.charAt(pt)) != ">") {
|
| |
while (pt < data.length && "\n\r\t ".indexOf(ch = data.charAt(pt)) >= 0) pt++
|
| |
pt0 = pt
|
| |
while (pt < data.length && "\n\r\t =/>".indexOf(ch = data.charAt(pt)) < 0) pt++
|
| |
var attrname = data.substring(pt0, pt).toLowerCase()
|
| |
if (attrname && ch != "=")
|
| |
e.setAttribute(attrname, "true")
|
| |
while (pt < data.length && "\n\r\t ".indexOf(ch = data.charAt(pt)) >= 0) pt++
|
| |
if (ch == "/") {
|
| |
Ptr[0] = pt + 2
|
| |
return e
|
| |
} else if (ch == "=") {
|
| |
var quote = data.charAt(++pt)
|
| |
pt0 = ++pt
|
| |
while (pt < data.length && (ch = data.charAt(pt)) != quote) pt++
|
| |
var attrvalue = data.substring(pt0, pt)
|
| |
e.setAttribute(attrname, attrvalue)
|
| |
pt++
|
| |
}
|
| |
}
|
| |
Ptr[0] = ++pt
|
| |
while (Ptr[0] < data.length) {
|
| |
var child = _jmolGetDomElement(data, Ptr, "/" + tagname, lvel+1)
|
| |
if (!child)break
|
| |
e.appendChild(child)
|
| |
}
|
| |
return e
|
| |
}
|
| |
|
| function _jmolPopup(url) {
|
function _jmolPopup(url) {
|
| var popup = window.open(url, "JmolPopup",
|
var popup = window.open(url, "JmolPopup",
|
| "left=150,top=150,height=400,width=600," +
|
"left=150,top=150,height=400,width=600," +
|
|
Line 775 function _jmolReadyCallback(name) {
|
Line 994 function _jmolReadyCallback(name) {
|
| }
|
}
|
|
|
|
| function _jmolSterilizeScript(script) {
|
function _jmolSterilizeScript(script) {
|
| var inlineScript = script.replace(/'/g, "'");
|
script = script.replace(/'/g, "'");
|
| if (_jmol.debugAlert)
|
if (_jmol.debugAlert)
|
| alert("script:\n" + inlineScript);
|
alert("script:\n" + script);
|
| return inlineScript;
|
return script;
|
| }
|
}
|
|
|
|
| function _jmolSterilizeInline(model) {
|
function _jmolSterilizeInline(model) {
|
| var inlineModel =
|
model = model.replace(/\r|\n|\r\n/g, (model.indexOf("|") >= 0 ? "\\/n" : "|")).replace(/'/g, "'");
|
| model.replace(/\r|\n|\r\n/g, "|").replace(/'/g, "'");
|
|
| if (_jmol.debugAlert)
|
if (_jmol.debugAlert)
|
| alert("inline model:\n" + inlineModel);
|
alert("inline model:\n" + model);
|
| return inlineModel;
|
return model;
|
| }
|
|
|
|
|
| /* AngelH, mar2007:
|
|
| By (re)setting this variable in the webpage before calling jmolApplet(), limits for applet size can be overriden.
|
|
| */
|
|
|
|
|
| /* hansonr, jun2007:
|
|
| 2048 standard for GeoWall (http://geowall.geo.lsa.umich.edu/home.html)
|
|
| */
|
|
|
|
|
| if (allowedJmolSize==undefined) var allowedJmolSize = [25, 2048, 300] // min, max, default (pixels)
|
|
| function _jmolGetAppletSize(size) {
|
|
| /* AngelH, mar2007
|
|
| Accepts single number or 2-value array, each one can be either:
|
|
| percent (text string ending %), decimal 0 to 1 (percent/100), number, or text string (interpreted as nr.)
|
|
| Size is now returned as string or number, no "px".
|
|
| */
|
|
| var width, height;
|
|
| if ( (typeof size) == "object" && size != null ) {
|
|
| width = size[0]; height = size[1];
|
|
| } else {
|
|
| width = height = size;
|
|
| }
|
|
| // if percent, leave it as it is:
|
|
| if ( width.toString().charAt(width.toString().length-1) != "%" ) {
|
|
| width = parseFloat(width); // convert to nr., or strip text, or make zero
|
|
| if ( width <= 1 && width > 0 ) { width = (width*100)+"%" } // decimal: convert to percent and quit
|
|
| else if ( width >= allowedJmolSize[0] && width <= allowedJmolSize[1] ) { width = parseInt(width) } // accept only that range (pixels)
|
|
| else { width = allowedJmolSize[2] } // default size 300 pixels
|
|
| }
|
|
| if ( height.toString().charAt(height.toString().length-1) != "%" ) {
|
|
| height = parseFloat(height);
|
|
| if ( height <= 1 && height > 0 ) { height = (height*100)+"%" }
|
|
| else if ( height >= allowedJmolSize[0] && height <= allowedJmolSize[1] ) { height = parseInt(height) }
|
|
| else { height = allowedJmolSize[2] }
|
|
| }
|
|
| return [width, height];
|
|
| }
|
}
|
|
|
|
| function _jmolRadio(script, labelHtml, isChecked, separatorHtml, groupName, id, title) {
|
function _jmolRadio(script, labelHtml, isChecked, separatorHtml, groupName, id, title) {
|
| ++_jmol.radioCount;
|
++_jmol.radioCount;
|
| if (groupName == undefined || groupName == null)
|
groupName != undefined && groupName != null || (groupName = "jmolRadioGroup" + (_jmol.radioGroupCount - 1));
|
| groupName = "jmolRadioGroup" + (_jmol.radioGroupCount - 1);
|
|
| if (!script)
|
if (!script)
|
| return "";
|
return "";
|
| if (labelHtml == undefined || labelHtml == null)
|
labelHtml != undefined && labelHtml != null || (labelHtml = script.substring(0, 32));
|
| labelHtml = script.substring(0, 32);
|
separatorHtml || (separatorHtml = "")
|
| if (! separatorHtml)
|
|
| separatorHtml = "";
|
|
| var scriptIndex = _jmolAddScript(script);
|
var scriptIndex = _jmolAddScript(script);
|
| var eospan = "</span>"
|
var eospan = "</span>"
|
| var t = "<span id=\"span_"+id+"\""+(title ? " title =\"" + title + "\"":"")+"><input name='"
|
var t = "<span id=\"span_"+id+"\""+(title ? " title=\"" + title + "\"":"")+"><input name='"
|
| + groupName + "' id='"+id+"' type='radio' onClick='_jmolClick(" +
|
+ groupName + "' id='"+id+"' type='radio' onclick='_jmolClick(this," +
|
| scriptIndex + _jmol.targetText + ");return true;' onMouseover='_jmolMouseOver(" +
|
scriptIndex + _jmol.targetText + ");return true;' onmouseover='_jmolMouseOver(" +
|
| scriptIndex + ");return true;' onMouseout='_jmolMouseOut()' " +
|
scriptIndex + ");return true;' onmouseout='_jmolMouseOut()' " +
|
| (isChecked ? "checked " : "") + _jmol.radioCssText + "/>"
|
(isChecked ? "checked='true' " : "") + _jmol.radioCssText + " />"
|
| if (labelHtml.toLowerCase().indexOf("<td>")>=0) {
|
if (labelHtml.toLowerCase().indexOf("<td>")>=0) {
|
| t += eospan
|
t += eospan
|
| eospan = "";
|
eospan = "";
|
| }
|
}
|
| t += labelHtml +eospan + separatorHtml;
|
t += "<label for=\"" + id + "\">" + labelHtml + "</label>" +eospan + separatorHtml;
|
| |
|
| return t;
|
return t;
|
| }
|
}
|
|
|
|
| function _jmolFindApplet(target) {
|
function _jmolFindApplet(target) {
|
| // first look for the target in the current window
|
// first look for the target in the current window
|
| var applet = _jmolFindAppletInWindow(window, target);
|
var applet = _jmolFindAppletInWindow(_jmol.appletWindow != null ? _jmol.appletWindow : window, target);
|
| // THEN look for the target in child frames
|
// THEN look for the target in child frames
|
| if (applet == undefined)
|
if (applet == undefined)
|
| applet = _jmolSearchFrames(window, target);
|
applet = _jmolSearchFrames(window, target);
|
|
Line 867 function _jmolGetApplet(targetSuffix){
|
Line 1046 function _jmolGetApplet(targetSuffix){
|
| var target = "jmolApplet" + (targetSuffix ? targetSuffix : "0");
|
var target = "jmolApplet" + (targetSuffix ? targetSuffix : "0");
|
| var applet = _jmolFindApplet(target);
|
var applet = _jmolFindApplet(target);
|
| if (applet) return applet
|
if (applet) return applet
|
| if(!_jmol.alerted)alert("could not find applet " + target);
|
_jmol.alerted || alert("could not find applet " + target);
|
| _jmol.alerted = true;
|
_jmol.alerted = true;
|
| return null
|
return null
|
| }
|
}
|
|
Line 876 function _jmolSearchFrames(win, target)
|
Line 1055 function _jmolSearchFrames(win, target)
|
| var applet;
|
var applet;
|
| var frames = win.frames;
|
var frames = win.frames;
|
| if (frames && frames.length) { // look in all the frames below this window
|
if (frames && frames.length) { // look in all the frames below this window
|
| |
try{
|
| for (var i = 0; i < frames.length; ++i) {
|
for (var i = 0; i < frames.length; ++i) {
|
| applet = _jmolSearchFrames(frames[i], target);
|
applet = _jmolSearchFrames(frames[i], target);
|
| if (applet)
|
if (applet)
|
| break;
|
return applet;
|
| }
|
}
|
| } else { // look for the applet in this window
|
}catch(e) {
|
| applet = _jmolFindAppletInWindow(win, target)
|
if (_jmol.debugAlert)
|
| |
alert("Jmol.js _jmolSearchFrames cannot access " + win.name + ".frame[" + i + "] consider using jmolSetAppletWindow()")
|
| |
}
|
| }
|
}
|
| return applet;
|
return applet = _jmolFindAppletInWindow(win, target)
|
| }
|
}
|
|
|
|
| function _jmolFindAppletInWindow(win, target) {
|
function _jmolFindAppletInWindow(win, target) {
|
| var doc = win.document;
|
var doc = win.document;
|
| // getElementById fails on MacOSX Safari & Mozilla
|
if (doc.getElementById(target))
|
| if (_jmol.useHtml4Object || _jmol.useIEObject)
|
|
| return doc.getElementById(target);
|
return doc.getElementById(target);
|
| else if (doc.applets)
|
if (doc.applets)
|
| return doc.applets[target];
|
return doc.applets[target];
|
| else
|
return doc[target];
|
| return doc[target];
|
|
| }
|
}
|
|
|
|
| function _jmolAddScript(script) {
|
function _jmolAddScript(script) {
|
| if (! script)
|
if (!script)
|
| return 0;
|
return 0;
|
| var index = _jmol.scripts.length;
|
var index = _jmol.scripts.length;
|
| _jmol.scripts[index] = script;
|
_jmol.scripts[index] = script;
|
| return index;
|
return index;
|
| }
|
}
|
|
|
|
| function _jmolClick(scriptIndex, targetSuffix) {
|
function _jmolClick(elementClicked, scriptIndex, targetSuffix) {
|
| jmolScript(_jmol.scripts[scriptIndex], targetSuffix);
|
_jmol.element = elementClicked;
|
| |
_jmolScriptExecute(elementClicked, _jmol.scripts[scriptIndex], targetSuffix);
|
| }
|
}
|
|
|
|
| function _jmolMenuSelected(menuObject, targetSuffix) {
|
function _jmolMenuSelected(menuObject, targetSuffix) {
|
| var scriptIndex = menuObject.value;
|
var scriptIndex = menuObject.value;
|
| if (scriptIndex != undefined) {
|
if (scriptIndex != undefined) {
|
| jmolScript(_jmol.scripts[scriptIndex], targetSuffix);
|
_jmolScriptExecute(menuObject, _jmol.scripts[scriptIndex], targetSuffix);
|
| return;
|
return;
|
| }
|
}
|
| var len = menuObject.length;
|
var len = menuObject.length;
|
| if (typeof len == "number") {
|
if (typeof len == "number") {
|
| for (var i = 0; i < len; ++i) {
|
for (var i = 0; i < len; ++i) {
|
| if (menuObject[i].selected) {
|
if (menuObject[i].selected) {
|
| _jmolClick(menuObject[i].value, targetSuffix);
|
_jmolClick(menuObject[i], menuObject[i].value, targetSuffix);
|
| return;
|
return;
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
|
Line 929 function _jmolMenuSelected(menuObject, t
|
Line 1110 function _jmolMenuSelected(menuObject, t
|
| }
|
}
|
|
|
|
|
|
|
| _jmol.checkboxMasters = new Array();
|
_jmol.checkboxMasters = {};
|
| _jmol.checkboxItems = new Array();
|
_jmol.checkboxItems = {};
|
|
|
|
| function jmolSetCheckboxGroup(chkMaster,chkBox) {
|
function jmolSetCheckboxGroup(chkMaster,chkBox) {
|
| var id = chkMaster;
|
var id = chkMaster;
|
| if(typeof(id)=="number")id = "jmolCheckbox" + id;
|
if(typeof(id)=="number")id = "jmolCheckbox" + id;
|
| chkMaster = document.getElementById(id);
|
chkMaster = document.getElementById(id);
|
| if (!chkMaster)alert("jmolSetCheckboxGroup: master checkbox not found: " + id);
|
if (!chkMaster)alert("jmolSetCheckboxGroup: master checkbox not found: " + id);
|
| var m = _jmol.checkboxMasters[id] = new Array();
|
var m = _jmol.checkboxMasters[id] = {};
|
| m.chkMaster = chkMaster;
|
m.chkMaster = chkMaster;
|
| m.chkGroup = new Array();
|
m.chkGroup = {};
|
| for (var i = 1; i < arguments.length; i++){
|
for (var i = 1; i < arguments.length; i++){
|
| var id = arguments[i];
|
var id = arguments[i];
|
| if(typeof(id)=="number")id = "jmolCheckbox" + id;
|
if(typeof(id)=="number")id = "jmolCheckbox" + id;
|
| checkboxItem = document.getElementById(id);
|
checkboxItem = document.getElementById(id);
|
| if (!checkboxItem)alert("jmolSetCheckboxGroup: group checkbox not found: " + id);
|
if (!checkboxItem)alert("jmolSetCheckboxGroup: group checkbox not found: " + id);
|
| m.chkGroup[id] = checkboxItem;
|
m.chkGroup[id] = checkboxItem;
|
| _jmol.checkboxItems[id] = m;
|
_jmol.checkboxItems[id] = m;
|
| }
|
}
|
| }
|
}
|
|
|
|
| function _jmolNotifyMaster(m){
|
function _jmolNotifyMaster(m){
|
| //called when a group item is checked
|
//called when a group item is checked
|
| var allOn = true;
|
var allOn = true;
|
| var allOff = true;
|
var allOff = true;
|
| for (var chkBox in m.chkGroup){
|
for (var chkBox in m.chkGroup){
|
| if(m.chkGroup[chkBox].checked)
|
if(m.chkGroup[chkBox].checked)
|
| allOff = false;
|
allOff = false;
|
| else
|
else
|
| allOn = false;
|
allOn = false;
|
| }
|
}
|
| if (allOn)m.chkMaster.checked = true;
|
if (allOn)m.chkMaster.checked = true;
|
| if (allOff)m.chkMaster.checked = false;
|
if (allOff)m.chkMaster.checked = false;
|
| if ((allOn || allOff) && _jmol.checkboxItems[m.chkMaster.id])
|
if ((allOn || allOff) && _jmol.checkboxItems[m.chkMaster.id])
|
| _jmolNotifyMaster(_jmol.checkboxItems[m.chkMaster.id])
|
_jmolNotifyMaster(_jmol.checkboxItems[m.chkMaster.id])
|
| }
|
}
|
|
|
|
| function _jmolNotifyGroup(m, isOn){
|
function _jmolNotifyGroup(m, isOn){
|
| //called when a master item is checked
|
//called when a master item is checked
|
| for (var chkBox in m.chkGroup){
|
for (var chkBox in m.chkGroup){
|
| var item = m.chkGroup[chkBox]
|
var item = m.chkGroup[chkBox]
|
| item.checked = isOn;
|
if (item.checked != isOn)
|
| if (_jmol.checkboxMasters[item.id])
|
item.click();
|
| _jmolNotifyGroup(_jmol.checkboxMasters[item.id], isOn)
|
if (_jmol.checkboxMasters[item.id])
|
| }
|
_jmolNotifyGroup(_jmol.checkboxMasters[item.id], isOn)
|
| |
}
|
| }
|
}
|
|
|
|
| function _jmolCbClick(ckbox, whenChecked, whenUnchecked, targetSuffix) {
|
function _jmolCbClick(ckbox, whenChecked, whenUnchecked, targetSuffix) {
|
| _jmolClick(ckbox.checked ? whenChecked : whenUnchecked, targetSuffix);
|
_jmol.control = ckbox
|
| |
_jmolClick(ckbox, ckbox.checked ? whenChecked : whenUnchecked, targetSuffix);
|
| if(_jmol.checkboxMasters[ckbox.id])
|
if(_jmol.checkboxMasters[ckbox.id])
|
| _jmolNotifyGroup(_jmol.checkboxMasters[ckbox.id], ckbox.checked)
|
_jmolNotifyGroup(_jmol.checkboxMasters[ckbox.id], ckbox.checked)
|
| if(_jmol.checkboxItems[ckbox.id])
|
if(_jmol.checkboxItems[ckbox.id])
|
| _jmolNotifyMaster(_jmol.checkboxItems[ckbox.id])
|
_jmolNotifyMaster(_jmol.checkboxItems[ckbox.id])
|
| }
|
}
|
|
|
|
| function _jmolCbOver(ckbox, whenChecked, whenUnchecked) {
|
function _jmolCbOver(ckbox, whenChecked, whenUnchecked) {
|
|
Line 1004 function _jmolSetCodebase(codebase) {
|
Line 1187 function _jmolSetCodebase(codebase) {
|
| }
|
}
|
|
|
|
| function _jmolOnloadResetForms() {
|
function _jmolOnloadResetForms() {
|
| |
// must be evaluated ONLY once
|
| _jmol.previousOnloadHandler = window.onload;
|
_jmol.previousOnloadHandler = window.onload;
|
| window.onload =
|
window.onload =
|
| function() {
|
function() {
|
|
Line 1026 function _jmolOnloadResetForms() {
|
Line 1210 function _jmolOnloadResetForms() {
|
|
|
|
| function _jmolEvalJSON(s,key){
|
function _jmolEvalJSON(s,key){
|
| s=s+""
|
s=s+""
|
| |
|
| if(!s)return []
|
if(!s)return []
|
| if(s.charAt(0)!="{"){
|
if(s.charAt(0)!="{"){
|
| if(s.indexOf(" | ")>=0)s=s.replace(/\ \|\ /g, "\n")
|
if(s.indexOf(" | ")>=0)s=s.replace(/\ \|\ /g, "\n")
|
| return s
|
return s
|
| }
|
}
|
| var A = eval("("+s+")")
|
var A = eval("("+s+")")
|
| if(!A)return
|
if(!A)return
|
|
Line 1040 function _jmolEvalJSON(s,key){
|
Line 1225 function _jmolEvalJSON(s,key){
|
| function _jmolEnumerateObject(A,key){
|
function _jmolEnumerateObject(A,key){
|
| var sout=""
|
var sout=""
|
| if(typeof(A) == "string" && A!="null"){
|
if(typeof(A) == "string" && A!="null"){
|
| sout+="\n"+key+"=\""+A+"\""
|
sout+="\n"+key+"=\""+A+"\""
|
| }else if(!isNaN(A)||A==null){
|
}else if(!isNaN(A)||A==null){
|
| sout+="\n"+key+"="+(A+""==""?"null":A)
|
sout+="\n"+key+"="+(A+""==""?"null":A)
|
| }else if(A.length){
|
}else if(A.length){
|
| sout+=key+"=new Array()"
|
sout+=key+"=[]"
|
| for(var i=0;i<A.length;i++){
|
for(var i=0;i<A.length;i++){
|
| sout+="\n"
|
sout+="\n"
|
| if(typeof(A[i]) == "object"||typeof(A[i]) == "array"){
|
if(typeof(A[i]) == "object"||typeof(A[i]) == "array"){
|
| sout+=_jmolEnumerateObject(A[i],key+"["+i+"]")
|
sout+=_jmolEnumerateObject(A[i],key+"["+i+"]")
|
| }else{
|
}else{
|
| sout+=key+"["+i+"]="+(typeof(A[i]) == "string" && A[i]!="null"?"\""+A[i].replace(/\"/g,"\\\"")+"\"":A[i])
|
sout+=key+"["+i+"]="+(typeof(A[i]) == "string" && A[i]!="null"?"\""+A[i].replace(/\"/g,"\\\"")+"\"":A[i])
|
| }
|
}
|
| }
|
}
|
| }else{
|
}else{
|
| if(key != ""){
|
if(key != ""){
|
| sout+=key+"=new Array()"
|
sout+=key+"={}"
|
| key+="."
|
key+="."
|
| }
|
}
|
|
|
|
| for(var i in A){
|
for(var i in A){
|
| sout+="\n"
|
sout+="\n"
|
| if(typeof(A[i]) == "object"||typeof(A[i]) == "array"){
|
if(typeof(A[i]) == "object"||typeof(A[i]) == "array"){
|
| sout+=_jmolEnumerateObject(A[i],key+i)
|
sout+=_jmolEnumerateObject(A[i],key+i)
|
| }else{
|
}else{
|
| sout+=key+i+"="+(typeof(A[i]) == "string" && A[i]!="null"?"\""+A[i].replace(/\"/g,"\\\"")+"\"":A[i])
|
sout+=key+i+"="+(typeof(A[i]) == "string" && A[i]!="null"?"\""+A[i].replace(/\"/g,"\\\"")+"\"":A[i])
|
| }
|
}
|
| }
|
}
|
| }
|
}
|
| return sout
|
return sout
|
| }
|
}
|
|
|
|
|
Line 1078 function _jmolSortKey0(a,b){
|
Line 1263 function _jmolSortKey0(a,b){
|
|
|
|
| function _jmolSortMessages(A){
|
function _jmolSortMessages(A){
|
| if(!A || typeof(A)!="object")return []
|
if(!A || typeof(A)!="object")return []
|
| var B = new Array()
|
var B = []
|
| for(var i=A.length-1;i>=0;i--)for(var j=0;j<A[i].length;j++)B[B.length]=A[i][j]
|
for(var i=A.length-1;i>=0;i--)for(var j=0;j<A[i].length;j++)B[B.length]=A[i][j]
|
| if(B.length == 0) return
|
if(B.length == 0) return
|
| B=B.sort(_jmolSortKey0)
|
B=B.sort(_jmolSortKey0)
|
|
Line 1112 function _jmolExtractPostData(url){
|
Line 1297 function _jmolExtractPostData(url){
|
| S=url.split("&POST:")
|
S=url.split("&POST:")
|
| var s=""
|
var s=""
|
| for(var i=1;i<S.length;i++){
|
for(var i=1;i<S.length;i++){
|
| KV=S[i].split("=")
|
KV=S[i].split("=")
|
| s+="&POSTKEY"+i+"="+KV[0]
|
s+="&POSTKEY"+i+"="+KV[0]
|
| s+="&POSTVALUE"+i+"="+KV[1]
|
s+="&POSTVALUE"+i+"="+KV[1]
|
| }
|
}
|
| return "&url="+escape(S[0])+s
|
return "&url="+escape(S[0])+s
|
| }
|
}
|
|
Line 1123 function _jmolLoadModel(targetSuffix,rem
|
Line 1308 function _jmolLoadModel(targetSuffix,rem
|
| //called by server, but in client
|
//called by server, but in client
|
| //overload this function to customize return
|
//overload this function to customize return
|
| _jmol.remoteURL=remoteURL
|
_jmol.remoteURL=remoteURL
|
| if(isError)alert(errorMessage)
|
isError && alert(errorMessage)
|
| jmolLoadInlineScript(array.join("\n"),_jmol.optionalscript,targetSuffix)
|
jmolLoadInlineScript(array.join("\n"),_jmol.optionalscript,targetSuffix)
|
| }
|
}
|
|
|
|
|
Line 1139 function jmolGetPropertyAsArray(sKey,sVa
|
Line 1324 function jmolGetPropertyAsArray(sKey,sVa
|
|
|
|
| function jmolGetPropertyAsString(sKey,sValue,targetSuffix) {
|
function jmolGetPropertyAsString(sKey,sValue,targetSuffix) {
|
| var applet = _jmolGetApplet(targetSuffix);
|
var applet = _jmolGetApplet(targetSuffix);
|
| if(!sValue)sValue=""
|
sValue == undefined && (sValue="");
|
| return (applet ? applet.getPropertyAsString(sKey,sValue) + "" : "")
|
return (applet ? applet.getPropertyAsString(sKey,sValue) + "" : "")
|
| }
|
}
|
|
|
|
| function jmolGetPropertyAsJSON(sKey,sValue,targetSuffix) {
|
function jmolGetPropertyAsJSON(sKey,sValue,targetSuffix) {
|
| if(!sValue)sValue = ""
|
sValue == undefined && (sValue = "")
|
| var applet = _jmolGetApplet(targetSuffix);
|
var applet = _jmolGetApplet(targetSuffix);
|
| try {
|
try {
|
| return (applet ? applet.getPropertyAsJSON(sKey,sValue) + "" : "")
|
return (applet ? applet.getPropertyAsJSON(sKey,sValue) + "" : "")
|
|
Line 1154 function jmolGetPropertyAsJSON(sKey,sVal
|
Line 1339 function jmolGetPropertyAsJSON(sKey,sVal
|
| }
|
}
|
|
|
|
| function jmolGetPropertyAsJavaObject(sKey,sValue,targetSuffix) {
|
function jmolGetPropertyAsJavaObject(sKey,sValue,targetSuffix) {
|
| if(!sValue)sValue = ""
|
sValue == undefined && (sValue = "")
|
| var applet = _jmolGetApplet(targetSuffix);
|
var applet = _jmolGetApplet(targetSuffix);
|
| return (applet ? applet.getProperty(sKey,sValue) : null)
|
return (applet ? applet.getProperty(sKey,sValue) : null)
|
| }
|
}
|
|
Line 1168 function jmolDecodeJSON(s) {
|
Line 1353 function jmolDecodeJSON(s) {
|
| ///////// synchronous scripting ////////
|
///////// synchronous scripting ////////
|
|
|
|
| function jmolScriptWait(script, targetSuffix) {
|
function jmolScriptWait(script, targetSuffix) {
|
| if(!targetSuffix)targetSuffix="0"
|
targetSuffix == undefined && (targetSuffix="0")
|
| var Ret=jmolScriptWaitAsArray(script, targetSuffix)
|
var Ret=jmolScriptWaitAsArray(script, targetSuffix)
|
| var s = ""
|
var s = ""
|
| for(i=Ret.length;--i>=0;)
|
for(var i=Ret.length;--i>=0;)
|
| for(j=0;j< Ret[i].length;j++)
|
for(var j=0;j< Ret[i].length;j++)
|
| s+=Ret[i][j]+"\n"
|
s+=Ret[i][j]+"\n"
|
| return s
|
return s
|
| }
|
}
|
|
|
|
| |
function jmolScriptWaitOutput(script, targetSuffix) {
|
| |
targetSuffix == undefined && (targetSuffix="0")
|
| |
var ret = ""
|
| |
try{
|
| |
if (script) {
|
| |
_jmolCheckBrowser();
|
| |
var applet=_jmolGetApplet(targetSuffix);
|
| |
if (applet) ret += applet.scriptWaitOutput(script);
|
| |
}
|
| |
}catch(e){
|
| |
}
|
| |
return ret;
|
| |
}
|
| |
|
| function jmolEvaluate(molecularMath, targetSuffix) {
|
function jmolEvaluate(molecularMath, targetSuffix) {
|
|
|
|
| //carries out molecular math on a model
|
//carries out molecular math on a model
|
|
|
|
| if(!targetSuffix)targetSuffix="0"
|
targetSuffix == undefined && (targetSuffix="0")
|
| var result = "" + jmolGetPropertyAsJavaObject("evaluate", molecularMath, targetSuffix);
|
var result = "" + jmolGetPropertyAsJavaObject("evaluate", molecularMath, targetSuffix);
|
| var s = result.replace(/\-*\d+/,"")
|
var s = result.replace(/\-*\d+/,"")
|
| if (s == "" && !isNaN(parseInt(result)))return parseInt(result);
|
if (s == "" && !isNaN(parseInt(result)))return parseInt(result);
|
|
Line 1192 function jmolEvaluate(molecularMath, tar
|
Line 1391 function jmolEvaluate(molecularMath, tar
|
|
|
|
| function jmolScriptEcho(script, targetSuffix) {
|
function jmolScriptEcho(script, targetSuffix) {
|
| // returns a newline-separated list of all echos from a script
|
// returns a newline-separated list of all echos from a script
|
| if(!targetSuffix)targetSuffix="0"
|
targetSuffix == undefined && (targetSuffix="0")
|
| var Ret=jmolScriptWaitAsArray(script, targetSuffix)
|
var Ret=jmolScriptWaitAsArray(script, targetSuffix)
|
| var s = ""
|
var s = ""
|
| for(i=Ret.length;--i>=0;)
|
for(var i=Ret.length;--i>=0;)
|
| for(j=Ret[i].length;--j>=0;)
|
for(var j=Ret[i].length;--j>=0;)
|
| if (Ret[i][j][1] == "scriptEcho")s+=Ret[i][j][3]+"\n"
|
if (Ret[i][j][1] == "scriptEcho")s+=Ret[i][j][3]+"\n"
|
| return s.replace(/ \| /g, "\n")
|
return s.replace(/ \| /g, "\n")
|
| }
|
}
|
|
Line 1204 function jmolScriptEcho(script, targetSu
|
Line 1403 function jmolScriptEcho(script, targetSu
|
|
|
|
| function jmolScriptMessage(script, targetSuffix) {
|
function jmolScriptMessage(script, targetSuffix) {
|
| // returns a newline-separated list of all messages from a script, ending with "script completed\n"
|
// returns a newline-separated list of all messages from a script, ending with "script completed\n"
|
| if(!targetSuffix)targetSuffix="0"
|
targetSuffix == undefined && (targetSuffix="0")
|
| var Ret=jmolScriptWaitAsArray(script, targetSuffix)
|
var Ret=jmolScriptWaitAsArray(script, targetSuffix)
|
| var s = ""
|
var s = ""
|
| for(i=Ret.length;--i>=0;)
|
for(var i=Ret.length;--i>=0;)
|
| for(j=Ret[i].length;--j>=0;)
|
for(var j=Ret[i].length;--j>=0;)
|
| if (Ret[i][j][1] == "scriptStatus")s+=Ret[i][j][3]+"\n"
|
if (Ret[i][j][1] == "scriptStatus")s+=Ret[i][j][3]+"\n"
|
| return s.replace(/ \| /g, "\n")
|
return s.replace(/ \| /g, "\n")
|
| }
|
}
|
|
Line 1224 function jmolScriptWaitAsArray(script, t
|
Line 1423 function jmolScriptWaitAsArray(script, t
|
| if (applet) ret += applet.scriptWait(script);
|
if (applet) ret += applet.scriptWait(script);
|
| ret = _jmolEvalJSON(ret,"jmolStatus")
|
ret = _jmolEvalJSON(ret,"jmolStatus")
|
| if(typeof ret == "object")
|
if(typeof ret == "object")
|
| return ret
|
return ret
|
| }
|
}
|
| }catch(e){
|
}catch(e){
|
| }
|
}
|
|
Line 1235 function jmolScriptWaitAsArray(script, t
|
Line 1434 function jmolScriptWaitAsArray(script, t
|
|
|
|
| //////////// save/restore orientation /////////////
|
//////////// save/restore orientation /////////////
|
|
|
|
| function jmolSaveOrientation(id, targetSuffix) {
|
function jmolSaveOrientation(id, targetSuffix) {
|
| if(!targetSuffix)targetSuffix="0"
|
targetSuffix == undefined && (targetSuffix="0")
|
| return _jmol["savedOrientation"+id] = jmolGetPropertyAsArray("orientationInfo","info",targetSuffix).moveTo
|
return _jmol["savedOrientation"+id] = jmolGetPropertyAsArray("orientationInfo","info",targetSuffix).moveTo
|
| }
|
}
|
|
|
|
| function jmolRestoreOrientation(id, targetSuffix) {
|
function jmolRestoreOrientation(id, targetSuffix) {
|
| if(!targetSuffix)targetSuffix="0"
|
targetSuffix == undefined && (targetSuffix="0")
|
| var s=_jmol["savedOrientation"+id]
|
var s=_jmol["savedOrientation"+id]
|
| if (!s || s == "")return
|
if (!s || s == "")return
|
| s=s.replace(/1\.0/,"0")
|
s=s.replace(/1\.0/,"0")
|
|
Line 1249 function jmolRestoreOrientation(id, targ
|
Line 1448 function jmolRestoreOrientation(id, targ
|
| }
|
}
|
|
|
|
| function jmolRestoreOrientationDelayed(id, delay, targetSuffix) {
|
function jmolRestoreOrientationDelayed(id, delay, targetSuffix) {
|
| if(arguments.length < 2)delay=1;
|
arguments.length < 2 && (delay=1)
|
| if(!targetSuffix)targetSuffix="0"
|
targetSuffix == undefined && (targetSuffix="0")
|
| var s=_jmol["savedOrientation"+id]
|
var s=_jmol["savedOrientation"+id]
|
| if (!s || s == "")return
|
if (!s || s == "")return
|
| s=s.replace(/1\.0/,delay)
|
s=s.replace(/1\.0/,delay)
|
|
Line 1266 function jmolRestoreOrientationDelayed(i
|
Line 1465 function jmolRestoreOrientationDelayed(i
|
| s = jmolAppletAddParam(s,"messageCallback", "myFunctionName")
|
s = jmolAppletAddParam(s,"messageCallback", "myFunctionName")
|
| document.write(s)
|
document.write(s)
|
| jmolSetDocument(document) // if you want to then write buttons and such normally
|
jmolSetDocument(document) // if you want to then write buttons and such normally
|
|
|
|
| */
|
*/
|
|
|
|
| function jmolAppletAddParam(appletCode,name,value){
|
function jmolAppletAddParam(appletCode,name,value){
|
| if(value == "")return appletCode
|
return (value == "" ? appletCode : appletCode.replace(/\<param/,"\n<param name='"+name+"' value='"+value+"' />\n<param"))
|
| return appletCode.replace(/\<param/,"\n<param name='"+name+"' value='"+value+"' />\n<param")
|
|
| }
|
}
|
|
|
|
| ///////////////auto load Research Consortium for Structural Biology (RCSB) data ///////////
|
///////////////auto load Research Consortium for Structural Biology (RCSB) data ///////////
|
|
|
|
| function jmolLoadAjax_STOLAF_RCSB(fileformat,pdbid,optionalscript,targetSuffix){
|
function jmolLoadAjax_STOLAF_RCSB(fileformat,pdbid,optionalscript,targetSuffix){
|
|
|
|
| if(!_jmol.thismodel)_jmol.thismodel = "1crn"
|
_jmol.thismodel || (_jmol.thismodel = "1crn")
|
| if(!_jmol.serverURL)_jmol.serverURL="http://fusion.stolaf.edu/chemistry/jmol/getajaxjs.cfm"
|
_jmol.serverURL || (_jmol.serverURL="http://fusion.stolaf.edu/chemistry/jmol/getajaxjs.cfm")
|
| if(!_jmol.RCSBserver)_jmol.RCSBserver="http://www.rcsb.org"
|
_jmol.RCSBserver || (_jmol.RCSBserver="http://www.rcsb.org")
|
| if(!_jmol.defaultURL_RCSB)_jmol.defaultURL_RCSB=_jmol.RCSBserver+"/pdb/files/1CRN.CIF"
|
_jmol.defaultURL_RCSB || (_jmol.defaultURL_RCSB=_jmol.RCSBserver+"/pdb/files/1CRN.CIF")
|
| if(!fileformat)fileformat="PDB"
|
fileformat || (fileformat="PDB")
|
| if(!pdbid)pdbid=prompt("Enter a 4-digit PDB ID:",_jmol.thismodel)
|
pdbid || (pdbid=prompt("Enter a 4-digit PDB ID:",_jmol.thismodel))
|
| if(!pdbid || pdbid.length != 4)return ""
|
if(!pdbid || pdbid.length != 4)return ""
|
| if(!targetSuffix)targetSuffix="0"
|
targetSuffix || (targetSuffix="0")
|
| if(!optionalscript)optionalscript=""
|
optionalscript || (optionalscript="")
|
| var url=_jmol.defaultURL_RCSB.replace(/1CRN/g,pdbid.toUpperCase())
|
var url=_jmol.defaultURL_RCSB.replace(/1CRN/g,pdbid.toUpperCase())
|
| if(fileformat!="CIF")url=url.replace(/CIF/,fileformat)
|
fileformat=="CIF" || (url=url.replace(/CIF/,fileformat))
|
| _jmol.optionalscript=optionalscript
|
_jmol.optionalscript=optionalscript
|
| _jmol.thismodel=pdbid
|
_jmol.thismodel=pdbid
|
| _jmol.thistargetsuffix=targetSuffix
|
_jmol.thistargetsuffix=targetSuffix
|
| _jmol.thisurl=url
|
_jmol.thisurl=url
|
| _jmol.modelArray = new Array()
|
_jmol.modelArray = []
|
| url=_jmol.serverURL+"?returnfunction=_jmolLoadModel&returnArray=_jmol.modelArray&id="+targetSuffix+_jmolExtractPostData(url)
|
url=_jmol.serverURL+"?returnfunction=_jmolLoadModel&returnArray=_jmol.modelArray&id="+targetSuffix+_jmolExtractPostData(url)
|
| _jmolDomScriptLoad(url)
|
_jmolDomScriptLoad(url)
|
| return url
|
return url
|
|
Line 1303 function jmolLoadAjax_STOLAF_RCSB(filefo
|
Line 1501 function jmolLoadAjax_STOLAF_RCSB(filefo
|
|
|
|
| function jmolLoadAjax_STOLAF_ANY(url, userid, optionalscript,targetSuffix){
|
function jmolLoadAjax_STOLAF_ANY(url, userid, optionalscript,targetSuffix){
|
| _jmol.serverURL="http://fusion.stolaf.edu/chemistry/jmol/getajaxjs.cfm"
|
_jmol.serverURL="http://fusion.stolaf.edu/chemistry/jmol/getajaxjs.cfm"
|
| if(!_jmol.thisurlANY)_jmol.thisurlANY = "http://www.stolaf.edu/depts/chemistry/mo/struc/data/ycp3-1.mol"
|
_jmol.thisurlANY || (_jmol.thisurlANY = "http://www.stolaf.edu/depts/chemistry/mo/struc/data/ycp3-1.mol")
|
| if(!url)url=prompt("Enter any (uncompressed file) URL:", _jmol.thisurlANY)
|
url || (url=prompt("Enter any (uncompressed file) URL:", _jmol.thisurlANY))
|
| if(!userid)userid="0"
|
userid || (userid="0")
|
| if(!targetSuffix)targetSuffix="0"
|
targetSuffix || (targetSuffix="0")
|
| if(!optionalscript)optionalscript=""
|
optionalscript || (optionalscript="")
|
| _jmol.optionalscript=optionalscript
|
_jmol.optionalscript=optionalscript
|
| _jmol.thistargetsuffix=targetSuffix
|
_jmol.thistargetsuffix=targetSuffix
|
| _jmol.modelArray = new Array()
|
_jmol.modelArray = []
|
| _jmol.thisurl = url
|
_jmol.thisurl = url
|
| url=_jmol.serverURL+"?returnfunction=_jmolLoadModel&returnArray=_jmol.modelArray&id="+targetSuffix+_jmolExtractPostData(url)
|
url=_jmol.serverURL+"?returnfunction=_jmolLoadModel&returnArray=_jmol.modelArray&id="+targetSuffix+_jmolExtractPostData(url)
|
| _jmolDomScriptLoad(url)
|
_jmolDomScriptLoad(url)
|
|
Line 1321 function jmolLoadAjax_STOLAF_ANY(url, us
|
Line 1519 function jmolLoadAjax_STOLAF_ANY(url, us
|
|
|
|
| function jmolLoadAjax_MSA(key,value,optionalscript,targetSuffix){
|
function jmolLoadAjax_MSA(key,value,optionalscript,targetSuffix){
|
|
|
|
| if(!_jmol.thiskeyMSA)_jmol.thiskeyMSA = "mineral"
|
_jmol.thiskeyMSA || (_jmol.thiskeyMSA = "mineral")
|
| if(!_jmol.thismodelMSA)_jmol.thismodelMSA = "quartz"
|
_jmol.thismodelMSA || (_jmol.thismodelMSA = "quartz")
|
| if(!_jmol.ajaxURL_MSA)_jmol.ajaxURL_MSA="http://rruff.geo.arizona.edu/AMS/result.php?mineral=quartz&viewing=ajaxjs"
|
_jmol.ajaxURL_MSA || (_jmol.ajaxURL_MSA="http://rruff.geo.arizona.edu/AMS/result.php?mineral=quartz&viewing=ajaxjs")
|
| if(!key)key=prompt("Enter a field:", _jmol.thiskeyMSA)
|
key || (key=prompt("Enter a field:", _jmol.thiskeyMSA))
|
| if(!key)return ""
|
if(!key)return ""
|
| if(!value)value=prompt("Enter a "+key+":", _jmol.thismodelMSA)
|
value || (value=prompt("Enter a "+key+":", _jmol.thismodelMSA))
|
| if(!value)return ""
|
if(!value)return ""
|
| if(!targetSuffix)targetSuffix="0"
|
targetSuffix || (targetSuffix="0")
|
| if(!optionalscript)optionalscript=""
|
optionalscript || (optionalscript="")
|
| if(optionalscript == 1)optionalscript='load "" {1 1 1}'
|
optionalscript == 1 && (optionalscript='load "" {1 1 1}')
|
| var url=_jmol.ajaxURL_MSA.replace(/mineral/g,key).replace(/quartz/g,value)
|
var url=_jmol.ajaxURL_MSA.replace(/mineral/g,key).replace(/quartz/g,value)
|
| _jmol.optionalscript=optionalscript
|
_jmol.optionalscript=optionalscript
|
| _jmol.thiskeyMSA=key
|
_jmol.thiskeyMSA=key
|
| _jmol.thismodelMSA=value
|
_jmol.thismodelMSA=value
|
| _jmol.thistargetsuffix=targetSuffix
|
_jmol.thistargetsuffix=targetSuffix
|
| _jmol.thisurl=url
|
_jmol.thisurl=url
|
| _jmol.modelArray = new Array()
|
_jmol.modelArray = []
|
| loadModel=_jmolLoadModel
|
loadModel=_jmolLoadModel
|
| _jmolDomScriptLoad(url)
|
_jmolDomScriptLoad(url)
|
| return url
|
return url
|
|
Line 1346 function jmolLoadAjax_MSA(key,value,opti
|
Line 1544 function jmolLoadAjax_MSA(key,value,opti
|
|
|
|
|
|
|
| function jmolLoadAjaxJS(url, userid, optionalscript,targetSuffix){
|
function jmolLoadAjaxJS(url, userid, optionalscript,targetSuffix){
|
| if(!userid)userid="0"
|
userid || (userid="0")
|
| if(!targetSuffix)targetSuffix="0"
|
targetSuffix || (targetSuffix="0")
|
| if(!optionalscript)optionalscript=""
|
optionalscript || (optionalscript="")
|
| _jmol.optionalscript=optionalscript
|
_jmol.optionalscript=optionalscript
|
| _jmol.thismodel=userid
|
_jmol.thismodel=userid
|
| _jmol.thistargetsuffix=targetSuffix
|
_jmol.thistargetsuffix=targetSuffix
|
| _jmol.modelArray = new Array()
|
_jmol.modelArray = []
|
| _jmol.thisurl = url
|
_jmol.thisurl = url
|
| url+="&returnFunction=_jmolLoadModel&returnArray=_jmol.modelArray&id="+targetSuffix
|
url+="&returnFunction=_jmolLoadModel&returnArray=_jmol.modelArray&id="+targetSuffix
|
| _jmolDomScriptLoad(url)
|
_jmolDomScriptLoad(url)
|
|
Line 1383 function jmolSetAtomCoordRelative(i,x,y,
|
Line 1581 function jmolSetAtomCoordRelative(i,x,y,
|
| ///////////////applet fake for testing buttons/////////////
|
///////////////applet fake for testing buttons/////////////
|
|
|
|
|
|
|
| if(document.location.search.indexOf("NOAPPLET")>=0){
|
if(_jmol.useNoApplet){
|
| jmolApplet = function(w){
|
jmolApplet = function(w){
|
| var s="<table style='background-color:black' width="+w+"><tr height="+w+">"
|
var s="<table style='background-color:black' width="+w+"><tr height="+w+">"
|
| +"<td align=center valign=center style='background-color:white'>"
|
+"<td align=center valign=center style='background-color:white'>"
|
| +"Applet would be here"
|
+"Applet would be here"
|
| +"<p><textarea id=fakeApplet rows=5 cols=50></textarea>"
|
+"<p><textarea id=fakeApplet rows=5 cols=50></textarea>"
|
| +"</td></tr></table>"
|
+"</td></tr></table>"
|
| return _jmolDocumentWrite(s)
|
return _jmolDocumentWrite(s)
|
| }
|
}
|
|
|
|
| _jmolFindApplet = function(){return jmolApplet0}
|
_jmolFindApplet = function(){return jmolApplet0}
|
|
|
|
| jmolApplet0 = {
|
jmolApplet0 = {
|
| script: function(script){document.getElementById("fakeApplet").value="\njmolScript:\n"+script}
|
script: function(script){document.getElementById("fakeApplet").value="\njmolScript:\n"+script}
|
| ,scriptWait: function(script){document.getElementById("fakeApplet").value="\njmolScriptWait:\n"+script}
|
,scriptWait: function(script){document.getElementById("fakeApplet").value="\njmolScriptWait:\n"+script}
|
| ,loadInline: function(data,script){document.getElementById("fakeApplet").value="\njmolLoadInline data:\n"+data+"\n\nscript:\n"+script}
|
,loadInline: function(data,script){document.getElementById("fakeApplet").value="\njmolLoadInline data:\n"+data+"\n\nscript:\n"+script}
|
| }
|
}
|
| }
|
}
|
|
|
|
|
|
|
| ///////////////////////////////////////////
|
///////////////////////////////////////////
|
|
|
|
| //new 9:49 AM 3/6/2007:
|
// This should no longer be needed, jmolResizeApplet() is better; kept for backwards compatibility
|
|
|
/*
|
| //both w and h are optional.
|
Resizes absolutely (pixels) or by percent of window (w or h 0.5 means 50%).
|
| //if either is between 0 and 1, then it is taken as percent/100.
|
targetSuffix is optional and defaults to zero (first applet in page).
|
| //if either is greater than 1, then it is taken as a size.
|
Both w and h are optional, but needed if you want to use targetSuffix.
|
| function jmolResize(w,h) {
|
h defaults to w
|
| |
w defaults to 100% of window
|
| |
If either w or h is between 0 and 1, then it is taken as percent/100.
|
| |
If either w or h is greater than 1, then it is taken as a size (pixels).
|
| |
*/
|
| |
function jmolResize(w,h,targetSuffix) {
|
| _jmol.alerted = true;
|
_jmol.alerted = true;
|
| var percentW = (!w ? 100 : w <= 1 && w > 0 ? w * 100 : 0)
|
var percentW = (!w ? 100 : w <= 1 && w > 0 ? w * 100 : 0);
|
| var percentH = (!h ? percentW : h <= 1 && h > 0 ? h * 100 : 0)
|
var percentH = (!h ? percentW : h <= 1 && h > 0 ? h * 100 : 0);
|
| if (_jmol.browser=="msie") {
|
if (_jmol.browser=="msie") {
|
| var width=document.body.clientWidth;
|
var width=document.body.clientWidth;
|
| var height=document.body.clientHeight;
|
var height=document.body.clientHeight;
|
|
Line 1422 function jmolResize(w,h) {
|
Line 1625 function jmolResize(w,h) {
|
| var width=window.innerWidth - netscapeScrollWidth;
|
var width=window.innerWidth - netscapeScrollWidth;
|
| var height=window.innerHeight-netscapeScrollWidth;
|
var height=window.innerHeight-netscapeScrollWidth;
|
| }
|
}
|
| var applet = _jmolGetApplet(0);
|
var applet = _jmolGetApplet(targetSuffix);
|
| |
if(!applet)return;
|
| |
applet.style.width = (percentW ? width * percentW/100 : w)+"px";
|
| |
applet.style.height = (percentH ? height * percentH/100 : (h ? h : w))+"px";
|
| |
//title=width + " " + height + " " + (new Date());
|
| |
}
|
| |
|
| |
// 13 Jun 09 -- makes jmolResize() obsolete (kept for backwards compatibility)
|
| |
function jmolResizeApplet(size,targetSuffix) {
|
| |
// See _jmolGetAppletSize() for the formats accepted as size [same used by jmolApplet()]
|
| |
// Special case: an empty value for width or height is accepted, meaning no change in that dimension.
|
| |
_jmol.alerted = true;
|
| |
var applet = _jmolGetApplet(targetSuffix);
|
| if(!applet)return;
|
if(!applet)return;
|
| applet.style.width = (percentW ? width * percentW/100 : w)+"px"
|
var sz = _jmolGetAppletSize(size, "px");
|
| applet.style.height = (percentH ? height * percentH/100 : h)+"px"
|
sz[0] && (applet.style.width = sz[0]);
|
| title=width + " " + height + " " + (new Date())
|
sz[1] && (applet.style.height = sz[1]);
|
| |
}
|
| |
|
| |
function _jmolGetAppletSize(size, units) {
|
| |
/* Accepts single number or 2-value array, each one can be one of:
|
| |
percent (text string ending %), decimal 0 to 1 (percent/100), number, or text string (interpreted as nr.)
|
| |
[width, height] array of strings is returned, with units added if specified.
|
| |
Percent is relative to container div or element (which should have explicitly set size).
|
| |
*/
|
| |
var width, height;
|
| |
if ( (typeof size) == "object" && size != null ) {
|
| |
width = size[0]; height = size[1];
|
| |
} else {
|
| |
width = height = size;
|
| |
}
|
| |
return [_jmolFixDim(width, units), _jmolFixDim(height, units)];
|
| |
}
|
| |
|
| |
function _jmolFixDim(x, units) {
|
| |
var sx = "" + x;
|
| |
return (sx.length == 0 ? (units ? "" : _jmol.allowedJmolSize[2])
|
| |
: sx.indexOf("%") == sx.length-1 ? sx
|
| |
: (x = parseFloat(x)) <= 1 && x > 0 ? x * 100 + "%"
|
| |
: (isNaN(x = Math.floor(x)) ? _jmol.allowedJmolSize[2]
|
| |
: x < _jmol.allowedJmolSize[0] ? _jmol.allowedJmolSize[0]
|
| |
: x > _jmol.allowedJmolSize[1] ? _jmol.allowedJmolSize[1]
|
| |
: x) + (units ? units : ""));
|
| }
|
}
|
|
|
|
| |
|
| |
|
![[BACK]](/icons/back.gif){kind=icon}
Return to Jmol.js CVS log ![[TXT]](/icons/text.gif){kind=icon}
![[DIR]](/icons/dir.gif){kind=icon}
Up to [LON-CAPA] / loncom / html / adm / jmol