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version 1.2, 2005/07/05 14:11:47
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version 1.4, 2014/08/22 17:57:54
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| /* $RCSfile$ |
/* Jmol 12.0 script library Jmol.js 5/20/2013 7:34:08 AM Bob Hanson
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| * $Author$ |
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| * $Date$ |
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| * $Revision$ |
NOTE: THIS LIBRARY IS DEPRECATED STARTING WITH Jmol 13.0.
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| * |
IT STILL WORKS (AND ALWAYS WILL, PROBABLY).
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| * Copyright (C) 2004 The Jmol Development Team |
PLEASE USE the set JmolCore.js/JmolApplet.js/JmolControls.js/JmolApi.js
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| * |
WITH OPTIONAL JmolCD.js (ChemDoodle Canvas and Canvas2D options) and JmolJSV.js (JSpecView)
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| * Contact: jmol-developers@lists.sf.net |
|
| * |
SEE http://chemapps.stolaf.edu/jmol/files/JmolCore.js for details
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| * This library is free software; you can redistribute it and/or |
SEE http://chemapps.stolaf.edu/jmol/examples-12/simple2.htm for an example
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| * modify it under the terms of the GNU Lesser General Public |
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| * License as published by the Free Software Foundation; either |
checkbox heirarchy -- see http://chemapps.stolaf.edu/jmol/docs/examples-11/check.htm
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| * version 2.1 of the License, or (at your option) any later version. |
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| * |
based on:
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| * This library is distributed in the hope that it will be useful, |
*
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| * but WITHOUT ANY WARRANTY; without even the implied warranty of |
* Copyright (C) 2004-2005 Miguel, Jmol Development, www.jmol.org
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| * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
*
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| * Lesser General Public License for more details. |
* Contact: hansonr@stolaf.edu
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| * |
*
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| * You should have received a copy of the GNU Lesser General Public |
* This library is free software; you can redistribute it and/or
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| * License along with this library; if not, write to the Free Software |
* modify it under the terms of the GNU Lesser General Public
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| * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA |
* License as published by the Free Software Foundation; either
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| * 02111-1307 USA. |
* version 2.1 of the License, or (at your option) any later version.
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| */ |
*
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| |
* This library is distributed in the hope that it will be useful,
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| // for documentation see www.jmol.org/jslibrary |
* but WITHOUT ANY WARRANTY; without even the implied warranty of
|
| |
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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| var undefined; // for IE 5 ... wherein undefined is undefined |
* Lesser General Public License for more details.
|
| |
*
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| //////////////////////////////////////////////////////////////// |
* You should have received a copy of the GNU Lesser General Public
|
| // Basic Scripting infrastruture |
* License along with this library; if not, write to the Free Software
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| //////////////////////////////////////////////////////////////// |
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
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| |
* 02111-1307 USA.
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| function jmolInitialize(codebaseDirectory) { |
*/
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| if (_jmol.initialized) { |
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| alert("jmolInitialize() should only be called *ONCE* within a page"); |
// for documentation see www.jmol.org/jslibrary
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| return; |
|
| } |
try{if(typeof(_jmol)!="undefined")exit()
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| if (! codebaseDirectory) { |
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| alert("codebaseDirectory is a required parameter to jmolInitialize"); |
// place "?NOAPPLET" on your command line to check applet control action with a textarea
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| codebaseDirectory = "."; |
// place "?JMOLJAR=xxxxx" to use a specific jar file
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| } |
|
| if (codebaseDirectory.indexOf("http://") == 0 || |
// bob hanson -- jmolResize(w,h) -- resizes absolutely or by percent (w or h 0.5 means 50%)
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| codebaseDirectory.indexOf("https://") == 0) |
// angel herraez -- update of jmolResize(w,h,targetSuffix) so it is not tied to first applet
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| alert("codebaseDirectory should be directory relative,\n" + |
// bob hanson -- jmolEvaluate -- evaluates molecular math 8:37 AM 2/23/2007
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| "not be an absolute URL : " + codebaseDirectory); |
// bob hanson -- jmolScriptMessage -- returns all "scriptStatus" messages 8:37 AM 2/23/2007
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| // else if (codebaseDirectory.charAt(0) == '/') |
// bob hanson -- jmolScriptEcho -- returns all "scriptEcho" messages 8:37 AM 2/23/2007
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| // alert("codebaseDirectory should be directory relative,\n" + |
// bob hanson -- jmolScriptWait -- 11:31 AM 5/2/2006
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| // "not relative to the root of the web server : " + codebaseDirectory); |
// bob hanson -- remove trailing separatorHTML in radio groups -- 12:18 PM 5/6/2006
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| _jmolSetCodebase(codebaseDirectory); |
// bob hanson -- adds support for dynamic DOM script nodes 7:04 AM 5/19/2006
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| _jmolOnloadResetForms(); |
// bob hanson -- adds try/catch for wiki - multiple code passes 7:05 AM 5/19/2006
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| _jmol.initialized = true; |
// bob hanson -- auto-initiates to defaultdir/defaultjar -- change as desired.
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| } |
// bob hanson -- adding save/restore orientation w/ and w/o delay 11:49 AM 5/25/2006
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| |
// bob hanson -- adding AjaxJS service 11:16 AM 6/3/2006
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| function jmolSetAppletColor(boxbgcolor, boxfgcolor, progresscolor) { |
// bob hanson -- fix for iframes not available for finding applet
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| _jmolInitCheck(); |
// bob hanson -- added applet fake ?NOAPPLET URL flag
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| _jmol.boxbgcolor = boxbgcolor; |
// bob hanson -- added jmolSetCallback(calbackName, funcName) 3:32 PM 6/13/2006
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| if (boxfgcolor) |
// used PRIOR to jmolApplet() or jmolAppletInline()
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| _jmol.boxfgcolor = boxfgcolor |
// added 4th array element in jmolRadioGroup -- title
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| else if (boxbgcolor == "white" || boxbgcolor == "#FFFFFF") |
// added <span> and id around link, checkbox, radio, menu
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| _jmol.boxfgcolor = "black"; |
// fixing AJAX loads for MSIE/Opera-Mozilla incompatibility
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| else |
// -- renamed Jmol-11.js from Jmol-new.js; JmolApplet.jar from JmolAppletProto.jar
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| _jmol.boxfgcolor = "white"; |
// renamed Jmol.js for Jmol 11 distribution
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| if (progresscolor) |
// -- modified jmolRestoreOrientation() to be immediate, no 1-second delay
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| _jmol.progresscolor = progresscolor; |
// bob hanson -- jmolScriptWait always returns a string -- 11:23 AM 9/16/2006
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| if (_jmol.debugAlert) |
// bh -- jmolCommandInput()
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| alert(" boxbgcolor=" + _jmol.boxbgcolor + |
// bh -- jmolSetTranslation(TF) -- forces translation even if there might be message callback issues
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| " boxfgcolor=" + _jmol.boxfgcolor + |
// bh -- minor fixes suggested by Angel
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| " progresscolor=" + _jmol.progresscolor); |
// bh -- adds jmolSetSyncId() and jmolGetSyncId()
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| } |
// bh 3/2008 -- adds jmolAppendInlineScript() and jmolAppendInlineArray()
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| |
// bh 3/2008 -- fixes IE7 bug in relation to jmolLoadInlineArray()
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| function jmolApplet(size, script, nameSuffix) { |
// bh 6/2008 -- adds jmolSetAppletWindow()
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| _jmolInitCheck(); |
// Angel H. 6/2008 -- added html <label> tags to checkboxes and radio buttons [in jmolCheckbox() and _jmolRadio() functions]
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| _jmolApplet(size, null, script, nameSuffix); |
// bh 7/2008 -- code fix "for(i..." not "for(var i..."
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| } |
// bh 12/2008 -- jmolLoadInline, jmolLoadInlineArray, jmolLoadInlineScript, jmolAppendInlineScript, jmolAppendInlineArray all return error message or null (Jmol 11.7.16)
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| |
// bh 12/2008 -- jmolScriptWaitOutput() -- waits for script to complete and delivers output normally sent to console
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| //////////////////////////////////////////////////////////////// |
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| // Basic controls |
// bh 5/2009 -- Support for XHTML using jmolSetXHTML(id)
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| //////////////////////////////////////////////////////////////// |
// ah & bh 6/2009 -- New jmolResizeApplet() more flexible, similar to jmolApplet() size syntax
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| |
// bh 11/2009 -- care in accessing top.document
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| function jmolButton(script, label, id) { |
// bh 12/2009 -- added jmolSetParameter(name, value)
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| _jmolInitCheck(); |
// bh 12/2009 -- added PARAMS=name:value;name:value;name:value... for command line
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| var scriptIndex = _jmolAddScript(script); |
// bh 12/2009 -- overhaul of target checking
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| if (label == undefined || label == null) |
// bh 1/2010 -- all _xxxx() methods ALWAYS have complete argument list
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| label = script.substring(0, 32); |
// bh 1/2010 -- adds option to run a JavaScript function from any Jmol control.
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| if (id == undefined || id == null) |
// This is accomplished by passing an array rather than a script:
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| id = "jmolButton" + _jmol.buttonCount; |
// jmolHref([myfunc,"my param 1", "my param 2"], "testing")
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| ++_jmol.buttonCount; |
// function myfunc(jmolControlObject, [myfunc,"my param 1", "my param 2"], target){...}
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| var t = "<input type='button' name='" + id + "' id='" + id + |
// and allows much more flexibility with responding to controls
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| "' value='" + label + |
// bh 4/2010 -- added jmolSetMemoryMb(nMb)
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| "' onClick='_jmolClick(" + scriptIndex + _jmol.targetText + |
// ah 1/2011 -- wider detection of browsers; more browsers now use the object tag instead of the applet tag;
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| ")' onMouseover='_jmolMouseOver(" + scriptIndex + |
// fix of object tag (removed classid) accounts for change of behavior in Chrome
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| ");return true' onMouseout='_jmolMouseOut()' " + |
// bh 5/2013 -- fix for master checkbox click not actuating checkboxes
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| _jmol.buttonCssText + "/>"; |
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| if (_jmol.debugAlert) |
var defaultdir = "."
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| alert(t); |
var defaultjar = "JmolApplet.jar"
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| document.write(t); |
|
| } |
|
| |
// Note added 12:41 PM 9/21/2008 by Bob Hanson, hansonr@stolaf.edu:
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| function jmolCheckbox(scriptWhenChecked, scriptWhenUnchecked, |
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| labelHtml, isChecked, id) { |
// JMOLJAR=xxxxx.jar on the URL for this page will override
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| _jmolInitCheck(); |
// the JAR file specified in the jmolInitialize() call.
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| if (id == undefined || id == null) |
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| id = "jmolCheckbox" + _jmol.checkboxCount; |
// The idea is that it can be very useful to test a web page with different JAR files
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| ++_jmol.checkboxCount; |
// Or for an expert user to substitute a signed applet for an unsigned one
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| if (scriptWhenChecked == undefined || scriptWhenChecked == null || |
// so as to use a broader range of models or to create JPEG files, for example.
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| scriptWhenUnchecked == undefined || scriptWhenUnchecked == null) { |
|
| alert("jmolCheckbox requires two scripts"); |
// If the JAR file is not in the current directory (has any sort of "/" in its name)
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| return; |
// then the user is presented with a warning and asked whether it is OK to change Jar files.
|
| } |
// The default action, if the user just presses "OK" is to NOT allow the change.
|
| if (labelHtml == undefined || labelHtml == null) { |
// The user must type the word "yes" in the prompt box for the change to be approved.
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| alert("jmolCheckbox requires a label"); |
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| return; |
// If you don't want people to be able to switch in their own JAR file on your page,
|
| } |
// simply set this next line to read "var allowJMOLJAR = false".
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| var indexChecked = _jmolAddScript(scriptWhenChecked); |
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| var indexUnchecked = _jmolAddScript(scriptWhenUnchecked); |
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| var t = "<input type='checkbox' name='" + id + "' id='" + id + |
var undefined; // for IE 5 ... wherein undefined is undefined
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| "' onClick='_jmolCbClick(this," + |
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| indexChecked + "," + indexUnchecked + _jmol.targetText + |
////////////////////////////////////////////////////////////////
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| ")' onMouseover='_jmolCbOver(this," + indexChecked + "," + |
// Basic Scripting infrastruture
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| indexUnchecked + |
////////////////////////////////////////////////////////////////
|
| ");return true' onMouseout='_jmolMouseOut()' " + |
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| (isChecked ? "checked " : "") + _jmol.checkboxCssText + "/>" + |
function jmolInitialize(codebaseDirectory, fileNameOrUseSignedApplet) {
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| labelHtml; |
if (_jmol.initialized)
|
| if (_jmol.debugAlert) |
return;
|
| alert(t); |
_jmol.initialized = true;
|
| document.write(t); |
if(_jmol.jmoljar) {
|
| } |
var f = _jmol.jmoljar;
|
| |
if (f.indexOf("/") >= 0) {
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| function jmolRadioGroup(arrayOfRadioButtons, separatorHtml, groupName) { |
alert ("This web page URL is requesting that the applet used be " + f + ". This is a possible security risk, particularly if the applet is signed, because signed applets can read and write files on your local machine or network.")
|
| _jmolInitCheck(); |
var ok = prompt("Do you want to use applet " + f + "? ","yes or no")
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| var type = typeof arrayOfRadioButtons; |
if (ok == "yes") {
|
| if (type != "object" || type == null || ! arrayOfRadioButtons.length) { |
codebaseDirectory = f.substring(0, f.lastIndexOf("/"));
|
| alert("invalid arrayOfRadioButtons"); |
fileNameOrUseSignedApplet = f.substring(f.lastIndexOf("/") + 1);
|
| return; |
} else {
|
| } |
_jmolGetJarFilename(fileNameOrUseSignedApplet);
|
| if (separatorHtml == undefined || separatorHtml == null) |
alert("The web page URL was ignored. Continuing using " + _jmol.archivePath + ' in directory "' + codebaseDirectory + '"');
|
| separatorHtml = " "; |
}
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| var length = arrayOfRadioButtons.length; |
} else {
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| var t = ""; |
fileNameOrUseSignedApplet = f;
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| jmolStartNewRadioGroup(); |
}
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| for (var i = 0; i < length; ++i) { |
}
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| var radio = arrayOfRadioButtons[i]; |
_jmolSetCodebase(codebaseDirectory);
|
| type = typeof radio; |
_jmolGetJarFilename(fileNameOrUseSignedApplet);
|
| if (type == "object") { |
_jmolOnloadResetForms();
|
| t += _jmolRadio(radio[0], radio[1], radio[2], separatorHtml, groupName); |
}
|
| } else { |
|
| t += _jmolRadio(radio, null, null, separatorHtml, groupName); |
function jmolSetTranslation(TF) {
|
| } |
_jmol.params.doTranslate = ''+TF;
|
| } |
}
|
| if (_jmol.debugAlert) |
|
| alert(t); |
function _jmolGetJarFilename(fileNameOrFlag) {
|
| document.write(t); |
_jmol.archivePath =
|
| } |
(typeof(fileNameOrFlag) == "string" ? fileNameOrFlag : (fileNameOrFlag ? "JmolAppletSigned" : "JmolApplet") + "0.jar");
|
| |
}
|
| function jmolLink(script, text, id) { |
|
| _jmolInitCheck(); |
function jmolSetDocument(doc) {
|
| if (id == undefined || id == null) |
_jmol.currentDocument = doc;
|
| id = "jmolLink" + _jmol.linkCount; |
}
|
| ++_jmol.linkCount; |
|
| var scriptIndex = _jmolAddScript(script); |
function jmolSetAppletColor(boxbgcolor, boxfgcolor, progresscolor) {
|
| var t = "<a name='" + id + "' id='" + id + |
_jmolInitCheck();
|
| "' href='javascript:_jmolClick(" + scriptIndex + |
_jmol.params.boxbgcolor = boxbgcolor;
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| _jmol.targetText + |
if (boxfgcolor)
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| ");' onMouseover='_jmolMouseOver(" + scriptIndex + |
_jmol.params.boxfgcolor = boxfgcolor
|
| ");return true;' onMouseout='_jmolMouseOut()' " + |
else if (boxbgcolor == "white" || boxbgcolor == "#FFFFFF")
|
| _jmol.linkCssText + ">" + text + "</a>"; |
_jmol.params.boxfgcolor = "black";
|
| if (_jmol.debugAlert) |
else
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| alert(t); |
_jmol.params.boxfgcolor = "white";
|
| document.write(t); |
if (progresscolor)
|
| } |
_jmol.params.progresscolor = progresscolor;
|
| |
if (_jmol.debugAlert)
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| function jmolMenu(arrayOfMenuItems, size, id) { |
alert(" boxbgcolor=" + _jmol.params.boxbgcolor +
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| _jmolInitCheck(); |
" boxfgcolor=" + _jmol.params.boxfgcolor +
|
| if (id == undefined || id == null) |
" progresscolor=" + _jmol.params.progresscolor);
|
| id = "jmolMenu" + _jmol.menuCount; |
}
|
| ++_jmol.menuCount; |
|
| var type = typeof arrayOfMenuItems; |
function jmolSetAppletWindow(w) {
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| if (type != null && type == "object" && arrayOfMenuItems.length) { |
_jmol.appletWindow = w;
|
| var length = arrayOfMenuItems.length; |
}
|
| if (typeof size != "number" || size == 1) |
|
| size = null; |
function jmolApplet(size, script, nameSuffix) {
|
| else if (size < 0) |
_jmolInitCheck();
|
| size = length; |
return _jmolApplet(size, null, script, nameSuffix);
|
| var sizeText = size ? " size='" + size + "' " : ""; |
}
|
| var t = "<select name='" + id + "' id='" + id + |
|
| "' onChange='_jmolMenuSelected(this" + |
////////////////////////////////////////////////////////////////
|
| _jmol.targetText + ")'" + |
// Basic controls
|
| sizeText + _jmol.menuCssText + ">"; |
////////////////////////////////////////////////////////////////
|
| for (var i = 0; i < length; ++i) { |
|
| var menuItem = arrayOfMenuItems[i]; |
// undefined means it wasn't there; null means it was explicitly listed as null (so as to skip it)
|
| type = typeof menuItem; |
|
| var script, text; |
function jmolButton(script, label, id, title) {
|
| var isSelected = undefined; |
_jmolInitCheck();
|
| if (type == "object" && menuItem != null) { |
id != undefined && id != null || (id = "jmolButton" + _jmol.buttonCount);
|
| script = menuItem[0]; |
label != undefined && label != null || (label = script.substring(0, 32));
|
| text = menuItem[1]; |
++_jmol.buttonCount;
|
| isSelected = menuItem[2]; |
var scriptIndex = _jmolAddScript(script);
|
| } else { |
var t = "<span id=\"span_"+id+"\""+(title ? " title=\"" + title + "\"":"")+"><input type='button' name='" + id + "' id='" + id +
|
| script = text = menuItem; |
"' value='" + label +
|
| } |
"' onclick='_jmolClick(this," + scriptIndex + _jmol.targetText +
|
| if (text == undefined || text == null) |
")' onmouseover='_jmolMouseOver(" + scriptIndex +
|
| text = script; |
");return true' onmouseout='_jmolMouseOut()' " +
|
| var scriptIndex = _jmolAddScript(script); |
_jmol.buttonCssText + " /></span>";
|
| var selectedText = isSelected ? "' selected>" : "'>"; |
if (_jmol.debugAlert)
|
| t += "<option value='" + scriptIndex + selectedText + text + "</option>"; |
alert(t);
|
| } |
return _jmolDocumentWrite(t);
|
| t += "</select>"; |
}
|
| if (_jmol.debugAlert) |
|
| alert(t); |
function jmolCheckbox(scriptWhenChecked, scriptWhenUnchecked,
|
| document.write(t); |
labelHtml, isChecked, id, title) {
|
| } |
_jmolInitCheck();
|
| } |
id != undefined && id != null || (id = "jmolCheckbox" + _jmol.checkboxCount);
|
| |
++_jmol.checkboxCount;
|
| function jmolHtml(html) { |
if (scriptWhenChecked == undefined || scriptWhenChecked == null ||
|
| document.write(html); |
scriptWhenUnchecked == undefined || scriptWhenUnchecked == null) {
|
| } |
alert("jmolCheckbox requires two scripts");
|
| |
return;
|
| function jmolBr() { |
}
|
| document.write("<br />"); |
if (labelHtml == undefined || labelHtml == null) {
|
| } |
alert("jmolCheckbox requires a label");
|
| |
return;
|
| //////////////////////////////////////////////////////////////// |
}
|
| // advanced scripting functions |
var indexChecked = _jmolAddScript(scriptWhenChecked);
|
| //////////////////////////////////////////////////////////////// |
var indexUnchecked = _jmolAddScript(scriptWhenUnchecked);
|
| |
var eospan = "</span>"
|
| function jmolDebugAlert(enableAlerts) { |
var t = "<span id=\"span_"+id+"\""+(title ? " title=\"" + title + "\"":"")+"><input type='checkbox' name='" + id + "' id='" + id +
|
| _jmol.debugAlert = (enableAlerts == undefined || enableAlerts) |
"' onclick='_jmolCbClick(this," +
|
| } |
indexChecked + "," + indexUnchecked + _jmol.targetText +
|
| |
")' onmouseover='_jmolCbOver(this," + indexChecked + "," +
|
| function jmolAppletInline(size, inlineModel, script, nameSuffix) { |
indexUnchecked +
|
| _jmolApplet(size, _jmolConvertInline(inlineModel), script, nameSuffix); |
");return true' onmouseout='_jmolMouseOut()' " +
|
| } |
(isChecked ? "checked='true' " : "")+ _jmol.checkboxCssText + " />"
|
| |
if (labelHtml.toLowerCase().indexOf("<td>")>=0) {
|
| function jmolSetTarget(targetSuffix) { |
t += eospan
|
| _jmol.targetSuffix = targetSuffix; |
eospan = "";
|
| _jmol.targetText = targetSuffix ? ",\"" + targetSuffix + "\"" : ""; |
}
|
| } |
t += "<label for=\"" + id + "\">" + labelHtml + "</label>" +eospan;
|
| |
if (_jmol.debugAlert)
|
| function jmolScript(script, targetSuffix) { |
alert(t);
|
| if (script) { |
return _jmolDocumentWrite(t);
|
| _jmolCheckBrowser(); |
}
|
| var target = "jmolApplet" + (targetSuffix ? targetSuffix : "0"); |
|
| var applet = _jmolFindApplet(target); |
function jmolStartNewRadioGroup() {
|
| if (applet) |
++_jmol.radioGroupCount;
|
| return applet.script(script); |
}
|
| else |
|
| alert("could not find applet " + target); |
function jmolRadioGroup(arrayOfRadioButtons, separatorHtml, groupName, id, title) {
|
| } |
/*
|
| } |
|
| |
array: [radio1,radio2,radio3...]
|
| function jmolLoadInline(model, targetSuffix) { |
where radioN = ["script","label",isSelected,"id","title"]
|
| if (model) { |
|
| var target = "jmolApplet" + (targetSuffix ? targetSuffix : "0"); |
*/
|
| // while (! _jmol.ready[target]) |
|
| // alert("The Jmol applet " + target + " is not loaded yet"); |
_jmolInitCheck();
|
| // if (! _jmol.ready[target]) |
var type = typeof arrayOfRadioButtons;
|
| // alert("The Jmol applet " + target + " is not loaded yet"); |
if (type != "object" || type == null || ! arrayOfRadioButtons.length) {
|
| // if (document.applets[target] && ! document.applets[target].isActive()) |
alert("invalid arrayOfRadioButtons");
|
| // alert("The Jmol applet " + target + " is not yet active"); |
return;
|
| // else { |
}
|
| var applet = _jmolFindApplet(target); |
separatorHtml != undefined && separatorHtml != null || (separatorHtml = " ");
|
| if (applet) |
var len = arrayOfRadioButtons.length;
|
| return applet.loadInline(model); |
jmolStartNewRadioGroup();
|
| else |
groupName || (groupName = "jmolRadioGroup" + (_jmol.radioGroupCount - 1));
|
| alert("could not find applet " + target); |
var t = "<span id='"+(id ? id : groupName)+"'>";
|
| // } |
for (var i = 0; i < len; ++i) {
|
| } |
if (i == len - 1)
|
| } |
separatorHtml = "";
|
| |
var radio = arrayOfRadioButtons[i];
|
| function jmolStartNewRadioGroup() { |
type = typeof radio;
|
| ++_jmol.radioGroupCount; |
if (type == "object") {
|
| } |
t += _jmolRadio(radio[0], radio[1], radio[2], separatorHtml, groupName, (radio.length > 3 ? radio[3]: (id ? id : groupName)+"_"+i), (radio.length > 4 ? radio[4] : 0), title);
|
| |
} else {
|
| function jmolRadio(script, labelHtml, isChecked, separatorHtml, groupName) { |
t += _jmolRadio(radio, null, null, separatorHtml, groupName, (id ? id : groupName)+"_"+i, title);
|
| _jmolInitCheck(); |
}
|
| if (_jmol.radioGroupCount == 0) |
}
|
| ++_jmol.radioGroupCount; |
t+="</span>"
|
| var t = _jmolRadio(script, labelHtml, isChecked, separatorHtml, groupName); |
if (_jmol.debugAlert)
|
| if (_jmol.debugAlert) |
alert(t);
|
| alert(t); |
return _jmolDocumentWrite(t);
|
| document.write(t); |
}
|
| } |
|
| |
|
| function jmolCheckBrowser(action, urlOrMessage, nowOrLater) { |
function jmolRadio(script, labelHtml, isChecked, separatorHtml, groupName, id, title) {
|
| if (typeof action == "string") { |
_jmolInitCheck();
|
| action = action.toLowerCase(); |
if (_jmol.radioGroupCount == 0)
|
| if (action != "alert" && action != "redirect" && action != "popup") |
++_jmol.radioGroupCount;
|
| action = null; |
var t = _jmolRadio(script, labelHtml, isChecked, separatorHtml, groupName, (id ? id : groupName + "_" + _jmol.radioCount), title ? title : 0);
|
| } |
if (_jmol.debugAlert)
|
| if (typeof action != "string") |
alert(t);
|
| alert("jmolCheckBrowser(action, urlOrMessage, nowOrLater)\n\n" + |
return _jmolDocumentWrite(t);
|
| "action must be 'alert', 'redirect', or 'popup'"); |
}
|
| else { |
|
| if (typeof urlOrMessage != "string") |
function jmolLink(script, label, id, title) {
|
| alert("jmolCheckBrowser(action, urlOrMessage, nowOrLater)\n\n" + |
_jmolInitCheck();
|
| "urlOrMessage must be a string"); |
id != undefined && id != null || (id = "jmolLink" + _jmol.linkCount);
|
| else { |
label != undefined && label != null || (label = script.substring(0, 32));
|
| _jmol.checkBrowserAction = action; |
++_jmol.linkCount;
|
| _jmol.checkBrowserUrlOrMessage = urlOrMessage; |
var scriptIndex = _jmolAddScript(script);
|
| } |
var t = "<span id=\"span_"+id+"\""+(title ? " title=\"" + title + "\"":"")+"><a name='" + id + "' id='" + id +
|
| } |
"' href='javascript:_jmolClick(this," + scriptIndex + _jmol.targetText + ");' onmouseover='_jmolMouseOver(" + scriptIndex +
|
| if (typeof nowOrLater == "string" && nowOrLater.toLowerCase() == "now") |
");return true;' onmouseout='_jmolMouseOut()' " +
|
| _jmolCheckBrowser(); |
_jmol.linkCssText + ">" + label + "</a></span>";
|
| } |
if (_jmol.debugAlert)
|
| |
alert(t);
|
| //////////////////////////////////////////////////////////////// |
return _jmolDocumentWrite(t);
|
| // Cascading Style Sheet Class support |
}
|
| //////////////////////////////////////////////////////////////// |
|
| |
function jmolCommandInput(label, size, id, title) {
|
| function jmolSetAppletCssClass(appletCssClass) { |
_jmolInitCheck();
|
| if (_jmol.hasGetElementById) { |
id != undefined && id != null || (id = "jmolCmd" + _jmol.cmdCount);
|
| _jmol.appletCssClass = appletCssClass; |
label != undefined && label != null || (label = "Execute");
|
| _jmol.appletCssText = appletCssClass ? "class='" + appletCssClass + "' " : ""; |
size != undefined && !isNaN(size) || (size = 60);
|
| } |
++_jmol.cmdCount;
|
| } |
var t = "<span id=\"span_"+id+"\""+(title ? " title=\"" + title + "\"":"")+"><input name='" + id + "' id='" + id +
|
| |
"' size='"+size+"' onkeypress='_jmolCommandKeyPress(event,\""+id+"\"" + _jmol.targetText + ")'><input type=button value = '"+label+"' onclick='jmolScript(document.getElementById(\""+id+"\").value" + _jmol.targetText + ")' /></span>";
|
| function jmolSetButtonCssClass(buttonCssClass) { |
if (_jmol.debugAlert)
|
| if (_jmol.hasGetElementById) { |
alert(t);
|
| _jmol.buttonCssClass = buttonCssClass; |
return _jmolDocumentWrite(t);
|
| _jmol.buttonCssText = buttonCssClass ? "class='" + buttonCssClass + "' " : ""; |
}
|
| } |
|
| } |
function _jmolCommandKeyPress(e, id, target) {
|
| |
var keycode = (window.event ? window.event.keyCode : e ? e.which : 0);
|
| function jmolSetCheckboxCssClass(checkboxCssClass) { |
if (keycode == 13) {
|
| if (_jmol.hasGetElementById) { |
var inputBox = document.getElementById(id)
|
| _jmol.checkboxCssClass = checkboxCssClass; |
_jmolScriptExecute(inputBox, inputBox.value, target)
|
| _jmol.checkboxCssText = checkboxCssClass ? "class='" + checkboxCssClass + "' " : ""; |
}
|
| } |
}
|
| } |
|
| |
function _jmolScriptExecute(element,script,target) {
|
| function jmolSetRadioCssClass(radioCssClass) { |
if (typeof(script) == "object")
|
| if (_jmol.hasGetElementById) { |
script[0](element, script, target)
|
| _jmol.radioCssClass = radioCssClass; |
else if (typeof(script) == "function")
|
| _jmol.radioCssText = radioCssClass ? "class='" + radioCssClass + "' " : ""; |
script(target);
|
| } |
else
|
| } |
jmolScript(script, target)
|
| |
}
|
| function jmolSetLinkCssClass(linkCssClass) { |
|
| if (_jmol.hasGetElementById) { |
function jmolMenu(arrayOfMenuItems, size, id, title) {
|
| _jmol.linkCssClass = linkCssClass; |
_jmolInitCheck();
|
| _jmol.linkCssText = linkCssClass ? "class='" + linkCssClass + "' " : ""; |
id != undefined && id != null || (id = "jmolMenu" + _jmol.menuCount);
|
| } |
++_jmol.menuCount;
|
| } |
var type = typeof arrayOfMenuItems;
|
| |
if (type != null && type == "object" && arrayOfMenuItems.length) {
|
| function jmolSetMenuCssClass(menuCssClass) { |
var len = arrayOfMenuItems.length;
|
| if (_jmol.hasGetElementById) { |
if (typeof size != "number" || size == 1)
|
| _jmol.menuCssClass = menuCssClass; |
size = null;
|
| _jmol.menuCssText = menuCssClass ? "class='" + menuCssClass + "' " : ""; |
else if (size < 0)
|
| } |
size = len;
|
| } |
var sizeText = size ? " size='" + size + "' " : "";
|
| |
var t = "<span id=\"span_"+id+"\""+(title ? " title=\"" + title + "\"":"")+"><select name='" + id + "' id='" + id +
|
| //////////////////////////////////////////////////////////////// |
"' onChange='_jmolMenuSelected(this" + _jmol.targetText + ")'" +
|
| // functions for INTERNAL USE ONLY which are subject to change |
sizeText + _jmol.menuCssText + ">";
|
| // use at your own risk ... you have been WARNED! |
for (var i = 0; i < len; ++i) {
|
| //////////////////////////////////////////////////////////////// |
var menuItem = arrayOfMenuItems[i];
|
| |
type = typeof menuItem;
|
| var _jmol = { |
var script, text;
|
| |
var isSelected = undefined;
|
| debugAlert: false, |
if (type == "object" && menuItem != null) {
|
| bgcolor: "black", |
script = menuItem[0];
|
| progresscolor: "blue", |
text = menuItem[1];
|
| boxbgcolor: "black", |
isSelected = menuItem[2];
|
| boxfgcolor: "white", |
} else {
|
| boxmessage: "Downloading JmolApplet ...", |
script = text = menuItem;
|
| |
}
|
| codebase: ".", |
text != undefined && text != null || (text = script);
|
| modelbase: ".", |
if (script=="#optgroup") {
|
| |
t += "<optgroup label='" + text + "'>";
|
| appletCount: 0, |
} else if (script=="#optgroupEnd") {
|
| |
t += "</optgroup>";
|
| buttonCount: 0, |
} else {
|
| checkboxCount: 0, |
var scriptIndex = _jmolAddScript(script);
|
| linkCount: 0, |
var selectedText = isSelected ? "' selected='true'>" : "'>";
|
| menuCount: 0, |
t += "<option value='" + scriptIndex + selectedText + text + "</option>";
|
| radioCount: 0, |
}
|
| radioGroupCount: 0, |
}
|
| |
t += "</select></span>";
|
| appletCssClass: null, |
if (_jmol.debugAlert)
|
| appletCssText: "", |
alert(t);
|
| buttonCssClass: null, |
return _jmolDocumentWrite(t);
|
| buttonCssText: "", |
}
|
| checkboxCssClass: null, |
}
|
| checkboxCssText: "", |
|
| radioCssClass: null, |
function jmolHtml(html) {
|
| radioCssText: "", |
return _jmolDocumentWrite(html);
|
| linkCssClass: null, |
}
|
| linkCssText: "", |
|
| menuCssClass: null, |
function jmolBr() {
|
| menuCssText: "", |
return _jmolDocumentWrite("<br />");
|
| |
}
|
| targetSuffix: 0, |
|
| targetText: "", |
////////////////////////////////////////////////////////////////
|
| scripts: [""], |
// advanced scripting functions
|
| |
////////////////////////////////////////////////////////////////
|
| ua: navigator.userAgent.toLowerCase(), |
|
| uaVersion: parseFloat(navigator.appVersion), |
function jmolDebugAlert(enableAlerts) {
|
| |
_jmol.debugAlert = (enableAlerts == undefined || enableAlerts)
|
| os: "unknown", |
}
|
| browser: "unknown", |
|
| browserVersion: 0, |
function jmolAppletInline(size, inlineModel, script, nameSuffix) {
|
| hasGetElementById: !!document.getElementById, |
_jmolInitCheck();
|
| isJavaEnabled: navigator.javaEnabled(), |
return _jmolApplet(size, _jmolSterilizeInline(inlineModel),
|
| isNetscape47Win: false, |
script, nameSuffix);
|
| |
}
|
| isBrowserCompliant: false, |
|
| isJavaCompliant: false, |
function jmolSetTarget(targetSuffix) {
|
| isFullyCompliant: false, |
_jmol.targetSuffix = targetSuffix;
|
| |
_jmol.targetText = targetSuffix ? ",\"" + targetSuffix + "\"" : ",0";
|
| initialized: false, |
}
|
| initChecked: false, |
|
| |
function jmolScript(script, targetSuffix) {
|
| browserChecked: false, |
if (script) {
|
| checkBrowserAction: "alert", |
_jmolCheckBrowser();
|
| checkBrowserUrlOrMessage: null, |
if (targetSuffix == "all") {
|
| |
with (_jmol) {
|
| previousOnloadHandler: null, |
for (var i = 0; i < appletSuffixes.length; ++i) {
|
| ready: {} |
var applet = _jmolGetApplet(appletSuffixes[i]);
|
| } |
if (applet) applet.script(script);
|
| |
}
|
| with (_jmol) { |
}
|
| function _jmolTestUA(candidate) { |
} else {
|
| var ua = _jmol.ua; |
var applet=_jmolGetApplet(targetSuffix);
|
| var index = ua.indexOf(candidate); |
if (applet) applet.script(script);
|
| if (index < 0) |
}
|
| return false; |
}
|
| _jmol.browser = candidate; |
}
|
| _jmol.browserVersion = parseFloat(ua.substring(index + candidate.length+1)); |
|
| return true; |
function jmolLoadInline(model, targetSuffix) {
|
| } |
if (!model)return "ERROR: NO MODEL"
|
| |
var applet=_jmolGetApplet(targetSuffix);
|
| function _jmolTestOS(candidate) { |
if (!applet)return "ERROR: NO APPLET"
|
| if (_jmol.ua.indexOf(candidate) < 0) |
if (typeof(model) == "string")
|
| return false; |
return applet.loadInlineString(model, "", false);
|
| _jmol.os = candidate; |
else
|
| return true; |
return applet.loadInlineArray(model, "", false);
|
| } |
}
|
| |
|
| _jmolTestUA("konqueror") || |
|
| _jmolTestUA("safari") || |
function jmolLoadInlineScript(model, script, targetSuffix) {
|
| _jmolTestUA("omniweb") || |
if (!model)return "ERROR: NO MODEL"
|
| _jmolTestUA("opera") || |
var applet=_jmolGetApplet(targetSuffix);
|
| _jmolTestUA("webtv") || |
if (!applet)return "ERROR: NO APPLET"
|
| _jmolTestUA("icab") || |
return applet.loadInlineString(model, script, false);
|
| _jmolTestUA("msie") || |
}
|
| (_jmol.ua.indexOf("compatible") < 0 && _jmolTestUA("mozilla")); |
|
| |
|
| _jmolTestOS("linux") || |
function jmolLoadInlineArray(ModelArray, script, targetSuffix) {
|
| _jmolTestOS("unix") || |
if (!model)return "ERROR: NO MODEL"
|
| _jmolTestOS("mac") || |
script || (script="")
|
| _jmolTestOS("win"); |
var applet=_jmolGetApplet(targetSuffix);
|
| |
if (!applet)return "ERROR: NO APPLET"
|
| isNetscape47Win = (os == "win" && browser == "mozilla" && |
try {
|
| browserVersion >= 4.78 && browserVersion <= 4.8); |
return applet.loadInlineArray(ModelArray, script, false);
|
| |
} catch (err) {
|
| if (os == "win") { |
//IE 7 bug
|
| isBrowserCompliant = hasGetElementById || isNetscape47Win; |
return applet.loadInlineString(ModelArray.join("\n"), script, false);
|
| } else if (os == "mac") { // mac is the problem child :-( |
}
|
| if (browser == "mozilla" && browserVersion >= 5) { |
}
|
| // miguel 2004 11 17 |
|
| // checking the plugins array does not work because |
function jmolAppendInlineArray(ModelArray, script, targetSuffix) {
|
| // Netscape 7.2 OS X still has Java 1.3.1 listed even though |
if (!model)return "ERROR: NO MODEL"
|
| // javaplugin.sf.net is installed to upgrade to 1.4.2 |
script || (script="")
|
| eval("try {var v = java.lang.System.getProperty('java.version');" + |
var applet=_jmolGetApplet(targetSuffix);
|
| " _jmol.isBrowserCompliant = v >= '1.4.2';" + |
if (!applet)return "ERROR: NO APPLET"
|
| " } catch (e) { }"); |
try {
|
| } else if (browser == "opera" && browserVersion <= 7.54) { |
return applet.loadInlineArray(ModelArray, script, true);
|
| isBrowserCompliant = false; |
} catch (err) {
|
| } else { |
//IE 7 bug
|
| isBrowserCompliant = hasGetElementById && |
return applet.loadInlineString(ModelArray.join("\n"), script, true);
|
| !((browser == "msie") || |
}
|
| (browser == "safari" && browserVersion < 125.1)); |
}
|
| } |
|
| } else if (os == "linux" || os == "unix") { |
function jmolAppendInlineScript(model, script, targetSuffix) {
|
| if (browser == "konqueror" && browserVersion <= 3.3) |
if (!model)return "ERROR: NO MODEL"
|
| isBrowserCompliant = false; |
var applet=_jmolGetApplet(targetSuffix);
|
| else |
if (!applet)return "ERROR: NO APPLET"
|
| isBrowserCompliant = hasGetElementById; |
return applet.loadInlineString(model, script, true);
|
| } else { // other OS |
}
|
| isBrowserCompliant = hasGetElementById; |
|
| } |
function jmolCheckBrowser(action, urlOrMessage, nowOrLater) {
|
| |
if (typeof action == "string") {
|
| // possibly more checks in the future for this |
action = action.toLowerCase();
|
| isJavaCompliant = isJavaEnabled; |
action == "alert" || action == "redirect" || action == "popup" || (action = null);
|
| |
}
|
| isFullyCompliant = isBrowserCompliant && isJavaCompliant; |
if (typeof action != "string")
|
| } |
alert("jmolCheckBrowser(action, urlOrMessage, nowOrLater)\n\n" +
|
| |
"action must be 'alert', 'redirect', or 'popup'");
|
| function _jmolApplet(size, inlineModel, script, nameSuffix) { |
else {
|
| with (_jmol) { |
if (typeof urlOrMessage != "string")
|
| if (! nameSuffix) |
alert("jmolCheckBrowser(action, urlOrMessage, nowOrLater)\n\n" +
|
| nameSuffix = appletCount; |
"urlOrMessage must be a string");
|
| ++appletCount; |
else {
|
| if (! script) |
_jmol.checkBrowserAction = action;
|
| script = "select *"; |
_jmol.checkBrowserUrlOrMessage = urlOrMessage;
|
| var sz = _jmolGetAppletSize(size); |
}
|
| var t; |
}
|
| t = "<applet name='jmolApplet" + nameSuffix + "' id='jmolApplet" + nameSuffix + |
if (typeof nowOrLater == "string" && nowOrLater.toLowerCase() == "now")
|
| "' " + appletCssText + |
_jmolCheckBrowser();
|
| " code='JmolApplet' archive='JmolApplet.jar'\n" + |
}
|
| " codebase='" + codebase + "'\n" + |
|
| " width='" + sz[0] + "' height='" + sz[1] + |
////////////////////////////////////////////////////////////////
|
| "' mayscript='true'>\n" + |
// Cascading Style Sheet Class support
|
| " <param name='progressbar' value='true' />\n" + |
////////////////////////////////////////////////////////////////
|
| " <param name='progresscolor' value='" + |
|
| progresscolor + "' />\n" + |
function jmolSetAppletCssClass(appletCssClass) {
|
| " <param name='boxmessage' value='" + |
if (_jmol.hasGetElementById) {
|
| boxmessage + "' />\n" + |
_jmol.appletCssClass = appletCssClass;
|
| " <param name='boxbgcolor' value='" + |
_jmol.appletCssText = appletCssClass ? "class='" + appletCssClass + "' " : "";
|
| boxbgcolor + "' />\n" + |
}
|
| " <param name='boxfgcolor' value='" + |
}
|
| boxfgcolor + "' />\n" + |
|
| " <param name='ReadyCallback' value='_jmolReadyCallback' />\n"; |
function jmolSetButtonCssClass(buttonCssClass) {
|
| |
if (_jmol.hasGetElementById) {
|
| if (inlineModel) |
_jmol.buttonCssClass = buttonCssClass;
|
| t += " <param name='loadInline' value='" + inlineModel + "' />\n"; |
_jmol.buttonCssText = buttonCssClass ? "class='" + buttonCssClass + "' " : "";
|
| if (script) |
}
|
| t += " <param name='script' value='" + script + "' />\n"; |
}
|
| t += "</applet>"; |
|
| jmolSetTarget(nameSuffix); |
function jmolSetCheckboxCssClass(checkboxCssClass) {
|
| ready["jmolApplet" + nameSuffix] = false; |
if (_jmol.hasGetElementById) {
|
| if (_jmol.debugAlert) |
_jmol.checkboxCssClass = checkboxCssClass;
|
| alert(t); |
_jmol.checkboxCssText = checkboxCssClass ? "class='" + checkboxCssClass + "' " : "";
|
| document.write(t); |
}
|
| } |
}
|
| } |
|
| |
function jmolSetRadioCssClass(radioCssClass) {
|
| function _jmolInitCheck() { |
if (_jmol.hasGetElementById) {
|
| if (_jmol.initChecked) |
_jmol.radioCssClass = radioCssClass;
|
| return; |
_jmol.radioCssText = radioCssClass ? "class='" + radioCssClass + "' " : "";
|
| _jmol.initChecked = true; |
}
|
| if (_jmol.initialized) |
}
|
| return; |
|
| alert("jmolInitialize({codebase}, {badBrowseURL}, {badJavaURL})\n" + |
function jmolSetLinkCssClass(linkCssClass) {
|
| " must be called before any other Jmol.js functions"); |
if (_jmol.hasGetElementById) {
|
| } |
_jmol.linkCssClass = linkCssClass;
|
| |
_jmol.linkCssText = linkCssClass ? "class='" + linkCssClass + "' " : "";
|
| function _jmolCheckBrowser() { |
}
|
| with (_jmol) { |
}
|
| if (browserChecked) |
|
| return; |
function jmolSetMenuCssClass(menuCssClass) {
|
| browserChecked = true; |
if (_jmol.hasGetElementById) {
|
| |
_jmol.menuCssClass = menuCssClass;
|
| if (isFullyCompliant) |
_jmol.menuCssText = menuCssClass ? "class='" + menuCssClass + "' " : "";
|
| return true; |
}
|
| |
}
|
| if (checkBrowserAction == "redirect") |
|
| location.href = checkBrowserUrlOrMessage; |
////////////////////////////////////////////////////////////////
|
| else if (checkBrowserAction == "popup") |
// functions for INTERNAL USE ONLY which are subject to change
|
| _jmolPopup(checkBrowserUrlOrMessage); |
// use at your own risk ... you have been WARNED!
|
| else { |
////////////////////////////////////////////////////////////////
|
| var msg = checkBrowserUrlOrMessage; |
var _jmol = {
|
| if (msg == null) |
currentDocument: document,
|
| msg = "Your web browser is not fully compatible with Jmol\n\n" + |
|
| "brower: " + browser + |
debugAlert: false,
|
| " version: " + browserVersion + |
|
| " os: " + os + |
codebase: "",
|
| "\n\n" + ua; |
modelbase: ".",
|
| alert(msg); |
|
| } |
appletCount: 0,
|
| } |
appletSuffixes: [],
|
| return false; |
appletWindow: null,
|
| } |
allowedJmolSize: [25, 2048, 300], // min, max, default (pixels)
|
| |
/* By setting the _jmol.allowedJmolSize[] variable in the webpage
|
| function _jmolPopup(url) { |
before calling jmolApplet(), limits for applet size can be overriden.
|
| var popup = window.open(url, "JmolPopup", |
2048 standard for GeoWall (http://geowall.geo.lsa.umich.edu/home.html)
|
| "left=150,top=150,height=400,width=600," + |
*/
|
| "directories=yes,location=yes,menubar=yes," + |
buttonCount: 0,
|
| "toolbar=yes," + |
checkboxCount: 0,
|
| "resizable=yes,scrollbars=yes,status=yes"); |
linkCount: 0,
|
| if (popup.focus) |
cmdCount: 0,
|
| poup.focus(); |
menuCount: 0,
|
| } |
radioCount: 0,
|
| |
radioGroupCount: 0,
|
| function _jmolReadyCallback(name) { |
|
| if (_jmol.debugAlert) |
appletCssClass: null,
|
| alert(name + " is ready"); |
appletCssText: "",
|
| _jmol.ready["" + name] = true; |
buttonCssClass: null,
|
| } |
buttonCssText: "",
|
| |
checkboxCssClass: null,
|
| function _jmolConvertInline(model) { |
checkboxCssText: "",
|
| var inlineModel = model.replace(/\r|\n|\r\n/g, "|"); |
java_arguments: "-Xmx512m",
|
| if (_jmol.debugAlert) |
radioCssClass: null,
|
| alert("inline model:\n" + inlineModel); |
radioCssText: "",
|
| return inlineModel; |
linkCssClass: null,
|
| } |
linkCssText: "",
|
| |
menuCssClass: null,
|
| function _jmolGetAppletSize(size) { |
menuCssText: "",
|
| var width, height; |
|
| var type = typeof size; |
targetSuffix: 0,
|
| if (type == "number") |
targetText: ",0",
|
| width = height = size; |
scripts: [""],
|
| else if (type == "object" && size != null) { |
params: {
|
| width = size[0]; height = size[1]; |
syncId: ("" + Math.random()).substring(3),
|
| } |
progressbar: "true",
|
| if (! (width >= 25 && width <= 2000)) |
progresscolor: "blue",
|
| width = 300; |
boxbgcolor: "black",
|
| if (! (height >= 25 && height <= 2000)) |
boxfgcolor: "white",
|
| height = 300; |
boxmessage: "Downloading JmolApplet ..."
|
| return [width, height]; |
},
|
| } |
ua: navigator.userAgent.toLowerCase(),
|
| |
// uaVersion: parseFloat(navigator.appVersion), // not used
|
| function _jmolRadio(script, labelHtml, isChecked, separatorHtml, groupName) { |
|
| ++_jmol.radioCount; |
os: "unknown",
|
| if (groupName == undefined || groupName == null) |
browser: "unknown",
|
| groupName = "jmolRadioGroup" + (_jmol.radioGroupCount - 1); |
browserVersion: 0,
|
| if (!script) |
hasGetElementById: !!document.getElementById,
|
| return ""; |
isJavaEnabled: navigator.javaEnabled(),
|
| if (labelHtml == undefined || labelHtml == null) |
// isNetscape47Win: false, // not used, N4.7 is no longer supported even for detection
|
| labelHtml = script.substring(0, 32); |
useIEObject: false,
|
| if (! separatorHtml) |
useHtml4Object: false,
|
| separatorHtml = ""; |
|
| var scriptIndex = _jmolAddScript(script); |
windowsClassId: "clsid:8AD9C840-044E-11D1-B3E9-00805F499D93",
|
| return "<input name='" + groupName + |
windowsCabUrl:
|
| "' type='radio' onClick='_jmolClick(" + |
"http://java.sun.com/update/1.6.0/jinstall-6u22-windows-i586.cab",
|
| scriptIndex + _jmol.targetText + |
|
| ");return true;' onMouseover='_jmolMouseOver(" + |
isBrowserCompliant: false,
|
| scriptIndex + |
isJavaCompliant: false,
|
| ");return true;' onMouseout='_jmolMouseOut()' " + |
isFullyCompliant: false,
|
| (isChecked ? "checked " : "") + _jmol.radioCssText + "/>" + |
|
| labelHtml + separatorHtml; |
initialized: false,
|
| } |
initChecked: false,
|
| |
|
| function _jmolFindApplet(target) { |
browserChecked: false,
|
| // first look for the target in the current window |
checkBrowserAction: "alert",
|
| var applet = _jmolSearchFrames(window, target); |
checkBrowserUrlOrMessage: null,
|
| if (applet == undefined) |
|
| applet = _jmolSearchFrames(top, target); // look starting in top frame |
archivePath: null, // JmolApplet0.jar OR JmolAppletSigned0.jar
|
| return applet; |
|
| } |
previousOnloadHandler: null,
|
| |
|
| function _jmolSearchFrames(win, target) { |
jmoljar: null,
|
| var applet; |
useNoApplet: false,
|
| var frames = win.frames; |
|
| if (frames && frames.length) { // look in all the frames below this window |
ready: {}
|
| for (var i = 0; i < frames.length; ++i) { |
}
|
| applet = _jmolSearchFrames(frames[i++], target); |
|
| if (applet) |
with (_jmol) {
|
| break; |
function _jmolTestUA(candidate) {
|
| } |
var ua = _jmol.ua;
|
| } else { // look for the applet in this window |
var index = ua.indexOf(candidate);
|
| var doc = win.document; |
if (index < 0)
|
| // getElementById fails on MacOSX Safari & Mozilla |
return false;
|
| if (doc.applets) |
_jmol.browser = candidate;
|
| applet = doc.applets[target]; |
_jmol.browserVersion = parseFloat(ua.substring(index+candidate.length+1));
|
| else |
return true;
|
| applet = doc[target]; |
}
|
| } |
|
| return applet; |
function _jmolTestOS(candidate) {
|
| } |
if (_jmol.ua.indexOf(candidate) < 0)
|
| |
return false;
|
| function _jmolAddScript(script) { |
_jmol.os = candidate;
|
| if (! script) |
return true;
|
| return 0; |
}
|
| var index = _jmol.scripts.length; |
|
| _jmol.scripts[index] = script; |
_jmolTestUA("konqueror") ||
|
| return index; |
_jmolTestUA("webkit") ||
|
| } |
_jmolTestUA("omniweb") ||
|
| |
_jmolTestUA("opera") ||
|
| function _jmolClick(scriptIndex, targetSuffix) { |
_jmolTestUA("webtv") ||
|
| jmolScript(_jmol.scripts[scriptIndex], targetSuffix); |
_jmolTestUA("icab") ||
|
| } |
_jmolTestUA("msie") ||
|
| |
(_jmol.ua.indexOf("compatible") < 0 && _jmolTestUA("mozilla")); //Netscape, Mozilla, Seamonkey, Firefox and anything assimilated
|
| function _jmolMenuSelected(menuObject, targetSuffix) { |
|
| var scriptIndex = menuObject.value; |
_jmolTestOS("linux") ||
|
| if (scriptIndex != undefined) { |
_jmolTestOS("unix") ||
|
| jmolScript(_jmol.scripts[scriptIndex], targetSuffix); |
_jmolTestOS("mac") ||
|
| return; |
_jmolTestOS("win");
|
| } |
|
| var length = menuObject.length; |
isBrowserCompliant = hasGetElementById;
|
| if (typeof length == "number") { |
// known exceptions (old browsers):
|
| for (var i = 0; i < length; ++i) { |
if (browser == "opera" && browserVersion <= 7.54 && os == "mac"
|
| if (menuObject[i].selected) { |
|| browser == "webkit" && browserVersion < 125.12
|
| _jmolClick(menuObject[i].value, targetSuffix); |
|| browser == "msie" && os == "mac"
|
| return; |
|| browser == "konqueror" && browserVersion <= 3.3
|
| } |
) {
|
| } |
isBrowserCompliant = false;
|
| } |
}
|
| alert("?Que? menu selected bug #8734"); |
|
| } |
// possibly more checks in the future for this
|
| |
isJavaCompliant = isJavaEnabled;
|
| function _jmolCbClick(ckbox, whenChecked, whenUnchecked, targetSuffix) { |
|
| _jmolClick(ckbox.checked ? whenChecked : whenUnchecked, targetSuffix); |
isFullyCompliant = isBrowserCompliant && isJavaCompliant;
|
| } |
|
| |
useIEObject = (os == "win" && browser == "msie" && browserVersion >= 5.5);
|
| function _jmolCbOver(ckbox, whenChecked, whenUnchecked) { |
useHtml4Object =
|
| window.status = _jmol.scripts[ckbox.checked ? whenUnchecked : whenChecked]; |
(browser == "mozilla" && browserVersion >= 5) ||
|
| } |
(browser == "opera" && browserVersion >= 8) ||
|
| |
(browser == "webkit" && browserVersion >= 412.2);
|
| function _jmolMouseOver(scriptIndex) { |
try {
|
| window.status = _jmol.scripts[scriptIndex]; |
if (top.location.search.indexOf("JMOLJAR=")>=0)
|
| } |
jmoljar = top.location.search.split("JMOLJAR=")[1].split("&")[0];
|
| |
} catch(e) {
|
| function _jmolMouseOut() { |
// can't access top.location
|
| window.status = " "; |
}
|
| return true; |
try {
|
| } |
useNoApplet = (top.location.search.indexOf("NOAPPLET")>=0);
|
| |
} catch(e) {
|
| function _jmolSetCodebase(codebase) { |
// can't access top.document
|
| _jmol.codebase = codebase ? codebase : "."; |
}
|
| if (_jmol.debugAlert) |
}
|
| alert("jmolCodebase=" + _jmol.codebase); |
|
| } |
function jmolSetMemoryMb(nMb) {
|
| |
_jmol.java_arguments = "-Xmx" + Math.round(nMb) + "m"
|
| function _jmolOnloadResetForms() { |
}
|
| _jmol.previousOnloadHandler = window.onload; |
|
| window.onload = |
function jmolSetParameter(name,value) {
|
| function() { |
_jmol.params[name] = value
|
| // alert("onloadResetForms"); |
}
|
| with (_jmol) { |
|
| if (buttonCount+checkboxCount+menuCount+radioCount+radioGroupCount > 0) { |
function jmolSetCallback(callbackName,funcName) {
|
| var forms = document.forms; |
_jmol.params[callbackName] = funcName
|
| if (!forms || forms.length == 0) { |
}
|
| alert("<form> tags seem to be missing\n" + |
|
| "Jmol/HTML input controls must be contained " + |
try {
|
| "within form tags" |
// note this is done FIRST, so it cannot override a setting done by the developer
|
| // + "\n\n" + forms + " forms.length=" + forms.length + |
if (top.location.search.indexOf("PARAMS=")>=0) {
|
| // " typeof=" + (typeof forms) |
var pars = unescape(top.location.search.split("PARAMS=")[1].split("&")[0]).split(";");
|
| ); |
for (var i = 0; i < pars.length; i++) {
|
| } else { |
var p = pars[i].split(":");
|
| for (var i = forms.length; --i >= 0; ) |
jmolSetParameter(p[0],p[1]);
|
| forms[i].reset(); |
}
|
| } |
}
|
| } |
} catch(e) {
|
| if (previousOnloadHandler) |
// can't access top.location
|
| previousOnloadHandler(); |
}
|
| } |
|
| } |
function jmolSetSyncId(n) {
|
| } |
return _jmol.params["syncId"] = n
|
| |
}
|
| |
|
| |
function jmolGetSyncId() {
|
| |
return _jmol.params["syncId"]
|
| |
}
|
| |
|
| |
function jmolSetLogLevel(n) {
|
| |
_jmol.params.logLevel = ''+n;
|
| |
}
|
| |
|
| |
/* AngelH, mar2007:
|
| |
By (re)setting these variables in the webpage before calling jmolApplet(),
|
| |
a custom message can be provided (e.g. localized for user's language) when no Java is installed.
|
| |
*/
|
| |
if (noJavaMsg==undefined) var noJavaMsg =
|
| |
"You do not have Java applets enabled in your web browser, or your browser is blocking this applet.<br />\n" +
|
| |
"Check the warning message from your browser and/or enable Java applets in<br />\n" +
|
| |
"your web browser preferences, or install the Java Runtime Environment from <a href='http://www.java.com'>www.java.com</a><br />";
|
| |
if (noJavaMsg2==undefined) var noJavaMsg2 =
|
| |
"You do not have the<br />\n" +
|
| |
"Java Runtime Environment<br />\n" +
|
| |
"installed for applet support.<br />\n" +
|
| |
"Visit <a href='http://www.java.com'>www.java.com</a>";
|
| |
function _jmolApplet(size, inlineModel, script, nameSuffix) {
|
| |
/* AngelH, mar2007
|
| |
Fixed percent / pixel business, to avoid browser errors:
|
| |
put "px" where needed, avoid where not.
|
| |
|
| |
Bob Hanson, 1/2010
|
| |
Fixed inline escape changing returns to |
|
| |
*/
|
| |
with (_jmol) {
|
| |
nameSuffix == undefined && (nameSuffix = appletCount);
|
| |
appletSuffixes.push(nameSuffix);
|
| |
++appletCount;
|
| |
script || (script = "select *");
|
| |
var sz = _jmolGetAppletSize(size);
|
| |
var widthAndHeight = " width='" + sz[0] + "' height='" + sz[1] + "' ";
|
| |
var tHeader, tFooter;
|
| |
codebase || jmolInitialize(".");
|
| |
params.name = "jmolApplet" + nameSuffix
|
| |
params.permissions = (archivePath.indexOf("Signed") >= 0 ? "all-permissions" : "sandbox");
|
| |
|
| |
if (useIEObject || useHtml4Object) {
|
| |
params.archive = archivePath;
|
| |
params.mayscript = 'true';
|
| |
params.codebase = codebase;
|
| |
params.code = 'JmolApplet.class';
|
| |
tHeader =
|
| |
"<object name='jmolApplet" + nameSuffix +
|
| |
"' id='jmolApplet" + nameSuffix + "' " + appletCssText + "\n" +
|
| |
widthAndHeight + "\n";
|
| |
tFooter = "</object>";
|
| |
}
|
| |
if (java_arguments)
|
| |
params.java_arguments = java_arguments;
|
| |
if (useIEObject) { // use MSFT IE6 object tag with .cab file reference
|
| |
tHeader += " classid='" + windowsClassId + "'\n" +
|
| |
(windowsCabUrl ? " codebase='" + windowsCabUrl + "'\n" : "") + ">\n";
|
| |
} else if (useHtml4Object) { // use HTML4 object tag
|
| |
tHeader += " type='application/x-java-applet'\n>\n";
|
| |
/* " classid='java:JmolApplet'\n" + AH removed this
|
| |
Chromium Issue 62076: Java Applets using an <object> with a classid paramater don't load.
|
| |
http://code.google.com/p/chromium/issues/detail?id=62076
|
| |
They say this is the correct behavior according to the spec, and there's no indication at this point
|
| |
that WebKit will be changing the handling, so eventually Safari will acquire this behavior too.
|
| |
Removing the classid parameter seems to be well tolerated by all browsers (even IE!).
|
| |
*/
|
| |
} else { // use applet tag
|
| |
tHeader =
|
| |
"<applet name='jmolApplet" + nameSuffix +
|
| |
"' id='jmolApplet" + nameSuffix + "' " + appletCssText + "\n" +
|
| |
widthAndHeight + "\n" +
|
| |
" code='JmolApplet'" +
|
| |
" archive='" + archivePath + "' codebase='" + codebase + "'\n" +
|
| |
" mayscript='true'>\n";
|
| |
tFooter = "</applet>";
|
| |
}
|
| |
var visitJava;
|
| |
if (useIEObject || useHtml4Object) {
|
| |
var szX = "width:" + sz[0]
|
| |
if ( szX.indexOf("%")==-1 ) szX+="px"
|
| |
var szY = "height:" + sz[1]
|
| |
if ( szY.indexOf("%")==-1 ) szY+="px"
|
| |
visitJava =
|
| |
"<p style='background-color:yellow; color:black; " +
|
| |
szX + ";" + szY + ";" +
|
| |
// why doesn't this vertical-align work?
|
| |
"text-align:center;vertical-align:middle;'>\n" +
|
| |
noJavaMsg +
|
| |
"</p>";
|
| |
} else {
|
| |
visitJava =
|
| |
"<table bgcolor='yellow'><tr>" +
|
| |
"<td align='center' valign='middle' " + widthAndHeight + "><font color='black'>\n" +
|
| |
noJavaMsg2 +
|
| |
"</font></td></tr></table>";
|
| |
}
|
| |
params.loadInline = (inlineModel ? inlineModel : "");
|
| |
params.script = (script ? _jmolSterilizeScript(script) : "");
|
| |
var t = tHeader + _jmolParams() + visitJava + tFooter;
|
| |
jmolSetTarget(nameSuffix);
|
| |
ready["jmolApplet" + nameSuffix] = false;
|
| |
if (_jmol.debugAlert)
|
| |
alert(t);
|
| |
return _jmolDocumentWrite(t);
|
| |
}
|
| |
}
|
| |
|
| |
function _jmolParams() {
|
| |
var t = "";
|
| |
for (var i in _jmol.params)
|
| |
if(_jmol.params[i]!="")
|
| |
t+=" <param name='"+i+"' value='"+_jmol.params[i]+"' />\n";
|
| |
return t
|
| |
}
|
| |
|
| |
function _jmolInitCheck() {
|
| |
if (_jmol.initChecked)
|
| |
return;
|
| |
_jmol.initChecked = true;
|
| |
jmolInitialize(defaultdir, defaultjar)
|
| |
}
|
| |
|
| |
function _jmolCheckBrowser() {
|
| |
with (_jmol) {
|
| |
if (browserChecked)
|
| |
return;
|
| |
browserChecked = true;
|
| |
|
| |
if (isFullyCompliant)
|
| |
return true;
|
| |
|
| |
if (checkBrowserAction == "redirect")
|
| |
location.href = checkBrowserUrlOrMessage;
|
| |
else if (checkBrowserAction == "popup")
|
| |
_jmolPopup(checkBrowserUrlOrMessage);
|
| |
else {
|
| |
var msg = checkBrowserUrlOrMessage;
|
| |
if (msg == null)
|
| |
msg = "Your web browser is not fully compatible with Jmol\n\n" +
|
| |
"browser: " + browser +
|
| |
" version: " + browserVersion +
|
| |
" os: " + os +
|
| |
" isBrowserCompliant: " + isBrowserCompliant +
|
| |
" isJavaCompliant: " + isJavaCompliant +
|
| |
"\n\n" + ua;
|
| |
alert(msg);
|
| |
}
|
| |
}
|
| |
return false;
|
| |
}
|
| |
|
| |
function jmolSetXHTML(id) {
|
| |
_jmol.isXHTML = true
|
| |
_jmol.XhtmlElement = null
|
| |
_jmol.XhtmlAppendChild = false
|
| |
if (id){
|
| |
_jmol.XhtmlElement = document.getElementById(id)
|
| |
_jmol.XhtmlAppendChild = true
|
| |
}
|
| |
}
|
| |
|
| |
function _jmolDocumentWrite(text) {
|
| |
if (_jmol.currentDocument) {
|
| |
if (_jmol.isXHTML && !_jmol.XhtmlElement) {
|
| |
var s = document.getElementsByTagName("script")
|
| |
_jmol.XhtmlElement = s.item(s.length - 1)
|
| |
_jmol.XhtmlAppendChild = false
|
| |
}
|
| |
if (_jmol.XhtmlElement) {
|
| |
_jmolDomDocumentWrite(text)
|
| |
} else {
|
| |
_jmol.currentDocument.write(text);
|
| |
}
|
| |
}
|
| |
return text;
|
| |
}
|
| |
|
| |
function _jmolDomDocumentWrite(data) {
|
| |
var pt = 0
|
| |
var Ptr = []
|
| |
Ptr[0] = 0
|
| |
while (Ptr[0] < data.length) {
|
| |
var child = _jmolGetDomElement(data, Ptr)
|
| |
if (!child)break
|
| |
if (_jmol.XhtmlAppendChild)
|
| |
_jmol.XhtmlElement.appendChild(child)
|
| |
else
|
| |
_jmol.XhtmlElement.parentNode.insertBefore(child, _jmol.XhtmlElement);
|
| |
}
|
| |
}
|
| |
function _jmolGetDomElement(data, Ptr, closetag, lvel) {
|
| |
var e = document.createElement("span")
|
| |
e.innerHTML = data
|
| |
Ptr[0] = data.length
|
| |
return e
|
| |
|
| |
//unnecessary?
|
| |
|
| |
closetag || (closetag = "")
|
| |
lvel || (lvel = 0)
|
| |
var pt0 = Ptr[0]
|
| |
var pt = pt0
|
| |
while (pt < data.length && data.charAt(pt) != "<") pt++
|
| |
if (pt != pt0) {
|
| |
var text = data.substring(pt0, pt)
|
| |
Ptr[0] = pt
|
| |
return document.createTextNode(text)
|
| |
}
|
| |
pt0 = ++pt
|
| |
var ch
|
| |
while (pt < data.length && "\n\r\t >".indexOf(ch = data.charAt(pt)) < 0) pt++
|
| |
var tagname = data.substring(pt0, pt)
|
| |
var e = (tagname == closetag || tagname == "/" ? ""
|
| |
: document.createElementNS ? document.createElementNS('http://www.w3.org/1999/xhtml', tagname)
|
| |
: document.createElement(tagname));
|
| |
if (ch == ">") {
|
| |
Ptr[0] = ++pt
|
| |
return e
|
| |
}
|
| |
while (pt < data.length && (ch = data.charAt(pt)) != ">") {
|
| |
while (pt < data.length && "\n\r\t ".indexOf(ch = data.charAt(pt)) >= 0) pt++
|
| |
pt0 = pt
|
| |
while (pt < data.length && "\n\r\t =/>".indexOf(ch = data.charAt(pt)) < 0) pt++
|
| |
var attrname = data.substring(pt0, pt).toLowerCase()
|
| |
if (attrname && ch != "=")
|
| |
e.setAttribute(attrname, "true")
|
| |
while (pt < data.length && "\n\r\t ".indexOf(ch = data.charAt(pt)) >= 0) pt++
|
| |
if (ch == "/") {
|
| |
Ptr[0] = pt + 2
|
| |
return e
|
| |
} else if (ch == "=") {
|
| |
var quote = data.charAt(++pt)
|
| |
pt0 = ++pt
|
| |
while (pt < data.length && (ch = data.charAt(pt)) != quote) pt++
|
| |
var attrvalue = data.substring(pt0, pt)
|
| |
e.setAttribute(attrname, attrvalue)
|
| |
pt++
|
| |
}
|
| |
}
|
| |
Ptr[0] = ++pt
|
| |
while (Ptr[0] < data.length) {
|
| |
var child = _jmolGetDomElement(data, Ptr, "/" + tagname, lvel+1)
|
| |
if (!child)break
|
| |
e.appendChild(child)
|
| |
}
|
| |
return e
|
| |
}
|
| |
|
| |
function _jmolPopup(url) {
|
| |
var popup = window.open(url, "JmolPopup",
|
| |
"left=150,top=150,height=400,width=600," +
|
| |
"directories=yes,location=yes,menubar=yes," +
|
| |
"toolbar=yes," +
|
| |
"resizable=yes,scrollbars=yes,status=yes");
|
| |
if (popup.focus)
|
| |
poup.focus();
|
| |
}
|
| |
|
| |
function _jmolReadyCallback(name) {
|
| |
if (_jmol.debugAlert)
|
| |
alert(name + " is ready");
|
| |
_jmol.ready["" + name] = true;
|
| |
}
|
| |
|
| |
function _jmolSterilizeScript(script) {
|
| |
script = script.replace(/'/g, "'");
|
| |
if (_jmol.debugAlert)
|
| |
alert("script:\n" + script);
|
| |
return script;
|
| |
}
|
| |
|
| |
function _jmolSterilizeInline(model) {
|
| |
model = model.replace(/\r|\n|\r\n/g, (model.indexOf("|") >= 0 ? "\\/n" : "|")).replace(/'/g, "'");
|
| |
if (_jmol.debugAlert)
|
| |
alert("inline model:\n" + model);
|
| |
return model;
|
| |
}
|
| |
|
| |
function _jmolRadio(script, labelHtml, isChecked, separatorHtml, groupName, id, title) {
|
| |
++_jmol.radioCount;
|
| |
groupName != undefined && groupName != null || (groupName = "jmolRadioGroup" + (_jmol.radioGroupCount - 1));
|
| |
if (!script)
|
| |
return "";
|
| |
labelHtml != undefined && labelHtml != null || (labelHtml = script.substring(0, 32));
|
| |
separatorHtml || (separatorHtml = "")
|
| |
var scriptIndex = _jmolAddScript(script);
|
| |
var eospan = "</span>"
|
| |
var t = "<span id=\"span_"+id+"\""+(title ? " title=\"" + title + "\"":"")+"><input name='"
|
| |
+ groupName + "' id='"+id+"' type='radio' onclick='_jmolClick(this," +
|
| |
scriptIndex + _jmol.targetText + ");return true;' onmouseover='_jmolMouseOver(" +
|
| |
scriptIndex + ");return true;' onmouseout='_jmolMouseOut()' " +
|
| |
(isChecked ? "checked='true' " : "") + _jmol.radioCssText + " />"
|
| |
if (labelHtml.toLowerCase().indexOf("<td>")>=0) {
|
| |
t += eospan
|
| |
eospan = "";
|
| |
}
|
| |
t += "<label for=\"" + id + "\">" + labelHtml + "</label>" +eospan + separatorHtml;
|
| |
|
| |
return t;
|
| |
}
|
| |
|
| |
function _jmolFindApplet(target) {
|
| |
// first look for the target in the current window
|
| |
var applet = _jmolFindAppletInWindow(_jmol.appletWindow != null ? _jmol.appletWindow : window, target);
|
| |
// THEN look for the target in child frames
|
| |
if (applet == undefined)
|
| |
applet = _jmolSearchFrames(window, target);
|
| |
// FINALLY look for the target in sibling frames
|
| |
if (applet == undefined)
|
| |
applet = _jmolSearchFrames(top, target); // look starting in top frame
|
| |
return applet;
|
| |
}
|
| |
|
| |
function _jmolGetApplet(targetSuffix){
|
| |
var target = "jmolApplet" + (targetSuffix ? targetSuffix : "0");
|
| |
var applet = _jmolFindApplet(target);
|
| |
if (applet) return applet
|
| |
_jmol.alerted || alert("could not find applet " + target);
|
| |
_jmol.alerted = true;
|
| |
return null
|
| |
}
|
| |
|
| |
function _jmolSearchFrames(win, target) {
|
| |
var applet;
|
| |
var frames = win.frames;
|
| |
if (frames && frames.length) { // look in all the frames below this window
|
| |
try{
|
| |
for (var i = 0; i < frames.length; ++i) {
|
| |
applet = _jmolSearchFrames(frames[i], target);
|
| |
if (applet)
|
| |
return applet;
|
| |
}
|
| |
}catch(e) {
|
| |
if (_jmol.debugAlert)
|
| |
alert("Jmol.js _jmolSearchFrames cannot access " + win.name + ".frame[" + i + "] consider using jmolSetAppletWindow()")
|
| |
}
|
| |
}
|
| |
return applet = _jmolFindAppletInWindow(win, target)
|
| |
}
|
| |
|
| |
function _jmolFindAppletInWindow(win, target) {
|
| |
var doc = win.document;
|
| |
if (doc.getElementById(target))
|
| |
return doc.getElementById(target);
|
| |
if (doc.applets)
|
| |
return doc.applets[target];
|
| |
return doc[target];
|
| |
}
|
| |
|
| |
function _jmolAddScript(script) {
|
| |
if (!script)
|
| |
return 0;
|
| |
var index = _jmol.scripts.length;
|
| |
_jmol.scripts[index] = script;
|
| |
return index;
|
| |
}
|
| |
|
| |
function _jmolClick(elementClicked, scriptIndex, targetSuffix) {
|
| |
_jmol.element = elementClicked;
|
| |
_jmolScriptExecute(elementClicked, _jmol.scripts[scriptIndex], targetSuffix);
|
| |
}
|
| |
|
| |
function _jmolMenuSelected(menuObject, targetSuffix) {
|
| |
var scriptIndex = menuObject.value;
|
| |
if (scriptIndex != undefined) {
|
| |
_jmolScriptExecute(menuObject, _jmol.scripts[scriptIndex], targetSuffix);
|
| |
return;
|
| |
}
|
| |
var len = menuObject.length;
|
| |
if (typeof len == "number") {
|
| |
for (var i = 0; i < len; ++i) {
|
| |
if (menuObject[i].selected) {
|
| |
_jmolClick(menuObject[i], menuObject[i].value, targetSuffix);
|
| |
return;
|
| |
}
|
| |
}
|
| |
}
|
| |
alert("?Que? menu selected bug #8734");
|
| |
}
|
| |
|
| |
|
| |
_jmol.checkboxMasters = {};
|
| |
_jmol.checkboxItems = {};
|
| |
|
| |
function jmolSetCheckboxGroup(chkMaster,chkBox) {
|
| |
var id = chkMaster;
|
| |
if(typeof(id)=="number")id = "jmolCheckbox" + id;
|
| |
chkMaster = document.getElementById(id);
|
| |
if (!chkMaster)alert("jmolSetCheckboxGroup: master checkbox not found: " + id);
|
| |
var m = _jmol.checkboxMasters[id] = {};
|
| |
m.chkMaster = chkMaster;
|
| |
m.chkGroup = {};
|
| |
for (var i = 1; i < arguments.length; i++){
|
| |
var id = arguments[i];
|
| |
if(typeof(id)=="number")id = "jmolCheckbox" + id;
|
| |
checkboxItem = document.getElementById(id);
|
| |
if (!checkboxItem)alert("jmolSetCheckboxGroup: group checkbox not found: " + id);
|
| |
m.chkGroup[id] = checkboxItem;
|
| |
_jmol.checkboxItems[id] = m;
|
| |
}
|
| |
}
|
| |
|
| |
function _jmolNotifyMaster(m){
|
| |
//called when a group item is checked
|
| |
var allOn = true;
|
| |
var allOff = true;
|
| |
for (var chkBox in m.chkGroup){
|
| |
if(m.chkGroup[chkBox].checked)
|
| |
allOff = false;
|
| |
else
|
| |
allOn = false;
|
| |
}
|
| |
if (allOn)m.chkMaster.checked = true;
|
| |
if (allOff)m.chkMaster.checked = false;
|
| |
if ((allOn || allOff) && _jmol.checkboxItems[m.chkMaster.id])
|
| |
_jmolNotifyMaster(_jmol.checkboxItems[m.chkMaster.id])
|
| |
}
|
| |
|
| |
function _jmolNotifyGroup(m, isOn){
|
| |
//called when a master item is checked
|
| |
for (var chkBox in m.chkGroup){
|
| |
var item = m.chkGroup[chkBox]
|
| |
if (item.checked != isOn)
|
| |
item.click();
|
| |
if (_jmol.checkboxMasters[item.id])
|
| |
_jmolNotifyGroup(_jmol.checkboxMasters[item.id], isOn)
|
| |
}
|
| |
}
|
| |
|
| |
function _jmolCbClick(ckbox, whenChecked, whenUnchecked, targetSuffix) {
|
| |
_jmol.control = ckbox
|
| |
_jmolClick(ckbox, ckbox.checked ? whenChecked : whenUnchecked, targetSuffix);
|
| |
if(_jmol.checkboxMasters[ckbox.id])
|
| |
_jmolNotifyGroup(_jmol.checkboxMasters[ckbox.id], ckbox.checked)
|
| |
if(_jmol.checkboxItems[ckbox.id])
|
| |
_jmolNotifyMaster(_jmol.checkboxItems[ckbox.id])
|
| |
}
|
| |
|
| |
function _jmolCbOver(ckbox, whenChecked, whenUnchecked) {
|
| |
window.status = _jmol.scripts[ckbox.checked ? whenUnchecked : whenChecked];
|
| |
}
|
| |
|
| |
function _jmolMouseOver(scriptIndex) {
|
| |
window.status = _jmol.scripts[scriptIndex];
|
| |
}
|
| |
|
| |
function _jmolMouseOut() {
|
| |
window.status = " ";
|
| |
return true;
|
| |
}
|
| |
|
| |
function _jmolSetCodebase(codebase) {
|
| |
_jmol.codebase = codebase ? codebase : ".";
|
| |
if (_jmol.debugAlert)
|
| |
alert("jmolCodebase=" + _jmol.codebase);
|
| |
}
|
| |
|
| |
function _jmolOnloadResetForms() {
|
| |
// must be evaluated ONLY once
|
| |
_jmol.previousOnloadHandler = window.onload;
|
| |
window.onload =
|
| |
function() {
|
| |
with (_jmol) {
|
| |
if (buttonCount+checkboxCount+menuCount+radioCount+radioGroupCount > 0) {
|
| |
var forms = document.forms;
|
| |
for (var i = forms.length; --i >= 0; )
|
| |
forms[i].reset();
|
| |
}
|
| |
if (previousOnloadHandler)
|
| |
previousOnloadHandler();
|
| |
}
|
| |
}
|
| |
}
|
| |
|
| |
////////////////////////////////////
|
| |
/////extensions for getProperty/////
|
| |
////////////////////////////////////
|
| |
|
| |
|
| |
function _jmolEvalJSON(s,key){
|
| |
s=s+""
|
| |
|
| |
if(!s)return []
|
| |
if(s.charAt(0)!="{"){
|
| |
if(s.indexOf(" | ")>=0)s=s.replace(/\ \|\ /g, "\n")
|
| |
return s
|
| |
}
|
| |
var A = eval("("+s+")")
|
| |
if(!A)return
|
| |
if(key && A[key])A=A[key]
|
| |
return A
|
| |
}
|
| |
|
| |
function _jmolEnumerateObject(A,key){
|
| |
var sout=""
|
| |
if(typeof(A) == "string" && A!="null"){
|
| |
sout+="\n"+key+"=\""+A+"\""
|
| |
}else if(!isNaN(A)||A==null){
|
| |
sout+="\n"+key+"="+(A+""==""?"null":A)
|
| |
}else if(A.length){
|
| |
sout+=key+"=[]"
|
| |
for(var i=0;i<A.length;i++){
|
| |
sout+="\n"
|
| |
if(typeof(A[i]) == "object"||typeof(A[i]) == "array"){
|
| |
sout+=_jmolEnumerateObject(A[i],key+"["+i+"]")
|
| |
}else{
|
| |
sout+=key+"["+i+"]="+(typeof(A[i]) == "string" && A[i]!="null"?"\""+A[i].replace(/\"/g,"\\\"")+"\"":A[i])
|
| |
}
|
| |
}
|
| |
}else{
|
| |
if(key != ""){
|
| |
sout+=key+"={}"
|
| |
key+="."
|
| |
}
|
| |
|
| |
for(var i in A){
|
| |
sout+="\n"
|
| |
if(typeof(A[i]) == "object"||typeof(A[i]) == "array"){
|
| |
sout+=_jmolEnumerateObject(A[i],key+i)
|
| |
}else{
|
| |
sout+=key+i+"="+(typeof(A[i]) == "string" && A[i]!="null"?"\""+A[i].replace(/\"/g,"\\\"")+"\"":A[i])
|
| |
}
|
| |
}
|
| |
}
|
| |
return sout
|
| |
}
|
| |
|
| |
|
| |
function _jmolSortKey0(a,b){
|
| |
return (a[0]<b[0]?1:a[0]>b[0]?-1:0)
|
| |
}
|
| |
|
| |
function _jmolSortMessages(A){
|
| |
if(!A || typeof(A)!="object")return []
|
| |
var B = []
|
| |
for(var i=A.length-1;i>=0;i--)for(var j=0;j<A[i].length;j++)B[B.length]=A[i][j]
|
| |
if(B.length == 0) return
|
| |
B=B.sort(_jmolSortKey0)
|
| |
return B
|
| |
}
|
| |
|
| |
/////////additional extensions //////////
|
| |
|
| |
|
| |
function _jmolDomScriptLoad(URL){
|
| |
//open(URL) //to debug
|
| |
_jmol.servercall=URL
|
| |
var node = document.getElementById("_jmolScriptNode")
|
| |
if (node && _jmol.browser!="msie"){
|
| |
document.getElementsByTagName("HEAD")[0].removeChild(node)
|
| |
node=null
|
| |
}
|
| |
if (node) {
|
| |
node.setAttribute("src",URL)
|
| |
} else {
|
| |
node=document.createElement("script")
|
| |
node.setAttribute("id","_jmolScriptNode")
|
| |
node.setAttribute("type","text/javascript")
|
| |
node.setAttribute("src",URL)
|
| |
document.getElementsByTagName("HEAD")[0].appendChild(node)
|
| |
}
|
| |
}
|
| |
|
| |
|
| |
function _jmolExtractPostData(url){
|
| |
S=url.split("&POST:")
|
| |
var s=""
|
| |
for(var i=1;i<S.length;i++){
|
| |
KV=S[i].split("=")
|
| |
s+="&POSTKEY"+i+"="+KV[0]
|
| |
s+="&POSTVALUE"+i+"="+KV[1]
|
| |
}
|
| |
return "&url="+escape(S[0])+s
|
| |
}
|
| |
|
| |
function _jmolLoadModel(targetSuffix,remoteURL,array,isError,errorMessage){
|
| |
//called by server, but in client
|
| |
//overload this function to customize return
|
| |
_jmol.remoteURL=remoteURL
|
| |
isError && alert(errorMessage)
|
| |
jmolLoadInlineScript(array.join("\n"),_jmol.optionalscript,targetSuffix)
|
| |
}
|
| |
|
| |
//////////user property/status functions/////////
|
| |
|
| |
function jmolGetStatus(strStatus,targetSuffix){
|
| |
return _jmolSortMessages(jmolGetPropertyAsArray("jmolStatus",strStatus,targetSuffix))
|
| |
}
|
| |
|
| |
function jmolGetPropertyAsArray(sKey,sValue,targetSuffix) {
|
| |
return _jmolEvalJSON(jmolGetPropertyAsJSON(sKey,sValue,targetSuffix),sKey)
|
| |
}
|
| |
|
| |
function jmolGetPropertyAsString(sKey,sValue,targetSuffix) {
|
| |
var applet = _jmolGetApplet(targetSuffix);
|
| |
sValue == undefined && (sValue="");
|
| |
return (applet ? applet.getPropertyAsString(sKey,sValue) + "" : "")
|
| |
}
|
| |
|
| |
function jmolGetPropertyAsJSON(sKey,sValue,targetSuffix) {
|
| |
sValue == undefined && (sValue = "")
|
| |
var applet = _jmolGetApplet(targetSuffix);
|
| |
try {
|
| |
return (applet ? applet.getPropertyAsJSON(sKey,sValue) + "" : "")
|
| |
} catch(e) {
|
| |
return ""
|
| |
}
|
| |
}
|
| |
|
| |
function jmolGetPropertyAsJavaObject(sKey,sValue,targetSuffix) {
|
| |
sValue == undefined && (sValue = "")
|
| |
var applet = _jmolGetApplet(targetSuffix);
|
| |
return (applet ? applet.getProperty(sKey,sValue) : null)
|
| |
}
|
| |
|
| |
|
| |
function jmolDecodeJSON(s) {
|
| |
return _jmolEnumerateObject(_jmolEvalJSON(s),"")
|
| |
}
|
| |
|
| |
|
| |
///////// synchronous scripting ////////
|
| |
|
| |
function jmolScriptWait(script, targetSuffix) {
|
| |
targetSuffix == undefined && (targetSuffix="0")
|
| |
var Ret=jmolScriptWaitAsArray(script, targetSuffix)
|
| |
var s = ""
|
| |
for(var i=Ret.length;--i>=0;)
|
| |
for(var j=0;j< Ret[i].length;j++)
|
| |
s+=Ret[i][j]+"\n"
|
| |
return s
|
| |
}
|
| |
|
| |
function jmolScriptWaitOutput(script, targetSuffix) {
|
| |
targetSuffix == undefined && (targetSuffix="0")
|
| |
var ret = ""
|
| |
try{
|
| |
if (script) {
|
| |
_jmolCheckBrowser();
|
| |
var applet=_jmolGetApplet(targetSuffix);
|
| |
if (applet) ret += applet.scriptWaitOutput(script);
|
| |
}
|
| |
}catch(e){
|
| |
}
|
| |
return ret;
|
| |
}
|
| |
|
| |
function jmolEvaluate(molecularMath, targetSuffix) {
|
| |
|
| |
//carries out molecular math on a model
|
| |
|
| |
targetSuffix == undefined && (targetSuffix="0")
|
| |
var result = "" + jmolGetPropertyAsJavaObject("evaluate", molecularMath, targetSuffix);
|
| |
var s = result.replace(/\-*\d+/,"")
|
| |
if (s == "" && !isNaN(parseInt(result)))return parseInt(result);
|
| |
var s = result.replace(/\-*\d*\.\d*/,"")
|
| |
if (s == "" && !isNaN(parseFloat(result)))return parseFloat(result);
|
| |
return result;
|
| |
}
|
| |
|
| |
function jmolScriptEcho(script, targetSuffix) {
|
| |
// returns a newline-separated list of all echos from a script
|
| |
targetSuffix == undefined && (targetSuffix="0")
|
| |
var Ret=jmolScriptWaitAsArray(script, targetSuffix)
|
| |
var s = ""
|
| |
for(var i=Ret.length;--i>=0;)
|
| |
for(var j=Ret[i].length;--j>=0;)
|
| |
if (Ret[i][j][1] == "scriptEcho")s+=Ret[i][j][3]+"\n"
|
| |
return s.replace(/ \| /g, "\n")
|
| |
}
|
| |
|
| |
|
| |
function jmolScriptMessage(script, targetSuffix) {
|
| |
// returns a newline-separated list of all messages from a script, ending with "script completed\n"
|
| |
targetSuffix == undefined && (targetSuffix="0")
|
| |
var Ret=jmolScriptWaitAsArray(script, targetSuffix)
|
| |
var s = ""
|
| |
for(var i=Ret.length;--i>=0;)
|
| |
for(var j=Ret[i].length;--j>=0;)
|
| |
if (Ret[i][j][1] == "scriptStatus")s+=Ret[i][j][3]+"\n"
|
| |
return s.replace(/ \| /g, "\n")
|
| |
}
|
| |
|
| |
|
| |
function jmolScriptWaitAsArray(script, targetSuffix) {
|
| |
var ret = ""
|
| |
try{
|
| |
jmolGetStatus("scriptEcho,scriptMessage,scriptStatus,scriptError",targetSuffix)
|
| |
if (script) {
|
| |
_jmolCheckBrowser();
|
| |
var applet=_jmolGetApplet(targetSuffix);
|
| |
if (applet) ret += applet.scriptWait(script);
|
| |
ret = _jmolEvalJSON(ret,"jmolStatus")
|
| |
if(typeof ret == "object")
|
| |
return ret
|
| |
}
|
| |
}catch(e){
|
| |
}
|
| |
return [[ret]]
|
| |
}
|
| |
|
| |
|
| |
|
| |
//////////// save/restore orientation /////////////
|
| |
|
| |
function jmolSaveOrientation(id, targetSuffix) {
|
| |
targetSuffix == undefined && (targetSuffix="0")
|
| |
return _jmol["savedOrientation"+id] = jmolGetPropertyAsArray("orientationInfo","info",targetSuffix).moveTo
|
| |
}
|
| |
|
| |
function jmolRestoreOrientation(id, targetSuffix) {
|
| |
targetSuffix == undefined && (targetSuffix="0")
|
| |
var s=_jmol["savedOrientation"+id]
|
| |
if (!s || s == "")return
|
| |
s=s.replace(/1\.0/,"0")
|
| |
return jmolScriptWait(s,targetSuffix)
|
| |
}
|
| |
|
| |
function jmolRestoreOrientationDelayed(id, delay, targetSuffix) {
|
| |
arguments.length < 2 && (delay=1)
|
| |
targetSuffix == undefined && (targetSuffix="0")
|
| |
var s=_jmol["savedOrientation"+id]
|
| |
if (!s || s == "")return
|
| |
s=s.replace(/1\.0/,delay)
|
| |
return jmolScriptWait(s,targetSuffix)
|
| |
}
|
| |
|
| |
//////////// add parameter /////////////
|
| |
/*
|
| |
* for adding callbacks or other parameters. Use:
|
| |
|
| |
jmolSetDocument(0)
|
| |
var s= jmolApplet(....)
|
| |
s = jmolAppletAddParam(s,"messageCallback", "myFunctionName")
|
| |
document.write(s)
|
| |
jmolSetDocument(document) // if you want to then write buttons and such normally
|
| |
|
| |
*/
|
| |
|
| |
function jmolAppletAddParam(appletCode,name,value){
|
| |
return (value == "" ? appletCode : appletCode.replace(/\<param/,"\n<param name='"+name+"' value='"+value+"' />\n<param"))
|
| |
}
|
| |
|
| |
///////////////auto load Research Consortium for Structural Biology (RCSB) data ///////////
|
| |
|
| |
function jmolLoadAjax_STOLAF_RCSB(fileformat,pdbid,optionalscript,targetSuffix){
|
| |
|
| |
_jmol.thismodel || (_jmol.thismodel = "1crn")
|
| |
_jmol.serverURL || (_jmol.serverURL="http://fusion.stolaf.edu/chemistry/jmol/getajaxjs.cfm")
|
| |
_jmol.RCSBserver || (_jmol.RCSBserver="http://www.rcsb.org")
|
| |
_jmol.defaultURL_RCSB || (_jmol.defaultURL_RCSB=_jmol.RCSBserver+"/pdb/files/1CRN.CIF")
|
| |
fileformat || (fileformat="PDB")
|
| |
pdbid || (pdbid=prompt("Enter a 4-digit PDB ID:",_jmol.thismodel))
|
| |
if(!pdbid || pdbid.length != 4)return ""
|
| |
targetSuffix || (targetSuffix="0")
|
| |
optionalscript || (optionalscript="")
|
| |
var url=_jmol.defaultURL_RCSB.replace(/1CRN/g,pdbid.toUpperCase())
|
| |
fileformat=="CIF" || (url=url.replace(/CIF/,fileformat))
|
| |
_jmol.optionalscript=optionalscript
|
| |
_jmol.thismodel=pdbid
|
| |
_jmol.thistargetsuffix=targetSuffix
|
| |
_jmol.thisurl=url
|
| |
_jmol.modelArray = []
|
| |
url=_jmol.serverURL+"?returnfunction=_jmolLoadModel&returnArray=_jmol.modelArray&id="+targetSuffix+_jmolExtractPostData(url)
|
| |
_jmolDomScriptLoad(url)
|
| |
return url
|
| |
}
|
| |
|
| |
/////////////// St. Olaf College AJAX server -- ANY URL ///////////
|
| |
|
| |
function jmolLoadAjax_STOLAF_ANY(url, userid, optionalscript,targetSuffix){
|
| |
_jmol.serverURL="http://fusion.stolaf.edu/chemistry/jmol/getajaxjs.cfm"
|
| |
_jmol.thisurlANY || (_jmol.thisurlANY = "http://www.stolaf.edu/depts/chemistry/mo/struc/data/ycp3-1.mol")
|
| |
url || (url=prompt("Enter any (uncompressed file) URL:", _jmol.thisurlANY))
|
| |
userid || (userid="0")
|
| |
targetSuffix || (targetSuffix="0")
|
| |
optionalscript || (optionalscript="")
|
| |
_jmol.optionalscript=optionalscript
|
| |
_jmol.thistargetsuffix=targetSuffix
|
| |
_jmol.modelArray = []
|
| |
_jmol.thisurl = url
|
| |
url=_jmol.serverURL+"?returnfunction=_jmolLoadModel&returnArray=_jmol.modelArray&id="+targetSuffix+_jmolExtractPostData(url)
|
| |
_jmolDomScriptLoad(url)
|
| |
}
|
| |
|
| |
|
| |
/////////////// Mineralogical Society of America (MSA) data /////////
|
| |
|
| |
function jmolLoadAjax_MSA(key,value,optionalscript,targetSuffix){
|
| |
|
| |
_jmol.thiskeyMSA || (_jmol.thiskeyMSA = "mineral")
|
| |
_jmol.thismodelMSA || (_jmol.thismodelMSA = "quartz")
|
| |
_jmol.ajaxURL_MSA || (_jmol.ajaxURL_MSA="http://rruff.geo.arizona.edu/AMS/result.php?mineral=quartz&viewing=ajaxjs")
|
| |
key || (key=prompt("Enter a field:", _jmol.thiskeyMSA))
|
| |
if(!key)return ""
|
| |
value || (value=prompt("Enter a "+key+":", _jmol.thismodelMSA))
|
| |
if(!value)return ""
|
| |
targetSuffix || (targetSuffix="0")
|
| |
optionalscript || (optionalscript="")
|
| |
optionalscript == 1 && (optionalscript='load "" {1 1 1}')
|
| |
var url=_jmol.ajaxURL_MSA.replace(/mineral/g,key).replace(/quartz/g,value)
|
| |
_jmol.optionalscript=optionalscript
|
| |
_jmol.thiskeyMSA=key
|
| |
_jmol.thismodelMSA=value
|
| |
_jmol.thistargetsuffix=targetSuffix
|
| |
_jmol.thisurl=url
|
| |
_jmol.modelArray = []
|
| |
loadModel=_jmolLoadModel
|
| |
_jmolDomScriptLoad(url)
|
| |
return url
|
| |
}
|
| |
|
| |
|
| |
|
| |
function jmolLoadAjaxJS(url, userid, optionalscript,targetSuffix){
|
| |
userid || (userid="0")
|
| |
targetSuffix || (targetSuffix="0")
|
| |
optionalscript || (optionalscript="")
|
| |
_jmol.optionalscript=optionalscript
|
| |
_jmol.thismodel=userid
|
| |
_jmol.thistargetsuffix=targetSuffix
|
| |
_jmol.modelArray = []
|
| |
_jmol.thisurl = url
|
| |
url+="&returnFunction=_jmolLoadModel&returnArray=_jmol.modelArray&id="+targetSuffix
|
| |
_jmolDomScriptLoad(url)
|
| |
}
|
| |
|
| |
|
| |
//// in case Jmol library has already been loaded:
|
| |
|
| |
}catch(e){}
|
| |
|
| |
///////////////moving atoms //////////////
|
| |
|
| |
// HIGHLY experimental!!
|
| |
|
| |
function jmolSetAtomCoord(i,x,y,z,targetSuffix){
|
| |
_jmolCheckBrowser();
|
| |
var applet=_jmolGetApplet(targetSuffix);
|
| |
if (applet) applet.getProperty('jmolViewer').setAtomCoord(i,x,y,z)
|
| |
}
|
| |
|
| |
function jmolSetAtomCoordRelative(i,x,y,z,targetSuffix){
|
| |
_jmolCheckBrowser();
|
| |
var applet=_jmolGetApplet(targetSuffix);
|
| |
if (applet) applet.getProperty('jmolViewer').setAtomCoordRelative(i,x,y,z)
|
| |
}
|
| |
|
| |
|
| |
///////////////applet fake for testing buttons/////////////
|
| |
|
| |
|
| |
if(_jmol.useNoApplet){
|
| |
jmolApplet = function(w){
|
| |
var s="<table style='background-color:black' width="+w+"><tr height="+w+">"
|
| |
+"<td align=center valign=center style='background-color:white'>"
|
| |
+"Applet would be here"
|
| |
+"<p><textarea id=fakeApplet rows=5 cols=50></textarea>"
|
| |
+"</td></tr></table>"
|
| |
return _jmolDocumentWrite(s)
|
| |
}
|
| |
|
| |
_jmolFindApplet = function(){return jmolApplet0}
|
| |
|
| |
jmolApplet0 = {
|
| |
script: function(script){document.getElementById("fakeApplet").value="\njmolScript:\n"+script}
|
| |
,scriptWait: function(script){document.getElementById("fakeApplet").value="\njmolScriptWait:\n"+script}
|
| |
,loadInline: function(data,script){document.getElementById("fakeApplet").value="\njmolLoadInline data:\n"+data+"\n\nscript:\n"+script}
|
| |
}
|
| |
}
|
| |
|
| |
|
| |
///////////////////////////////////////////
|
| |
|
| |
// This should no longer be needed, jmolResizeApplet() is better; kept for backwards compatibility
|
| |
/*
|
| |
Resizes absolutely (pixels) or by percent of window (w or h 0.5 means 50%).
|
| |
targetSuffix is optional and defaults to zero (first applet in page).
|
| |
Both w and h are optional, but needed if you want to use targetSuffix.
|
| |
h defaults to w
|
| |
w defaults to 100% of window
|
| |
If either w or h is between 0 and 1, then it is taken as percent/100.
|
| |
If either w or h is greater than 1, then it is taken as a size (pixels).
|
| |
*/
|
| |
function jmolResize(w,h,targetSuffix) {
|
| |
_jmol.alerted = true;
|
| |
var percentW = (!w ? 100 : w <= 1 && w > 0 ? w * 100 : 0);
|
| |
var percentH = (!h ? percentW : h <= 1 && h > 0 ? h * 100 : 0);
|
| |
if (_jmol.browser=="msie") {
|
| |
var width=document.body.clientWidth;
|
| |
var height=document.body.clientHeight;
|
| |
} else {
|
| |
var netscapeScrollWidth=15;
|
| |
var width=window.innerWidth - netscapeScrollWidth;
|
| |
var height=window.innerHeight-netscapeScrollWidth;
|
| |
}
|
| |
var applet = _jmolGetApplet(targetSuffix);
|
| |
if(!applet)return;
|
| |
applet.style.width = (percentW ? width * percentW/100 : w)+"px";
|
| |
applet.style.height = (percentH ? height * percentH/100 : (h ? h : w))+"px";
|
| |
//title=width + " " + height + " " + (new Date());
|
| |
}
|
| |
|
| |
// 13 Jun 09 -- makes jmolResize() obsolete (kept for backwards compatibility)
|
| |
function jmolResizeApplet(size,targetSuffix) {
|
| |
// See _jmolGetAppletSize() for the formats accepted as size [same used by jmolApplet()]
|
| |
// Special case: an empty value for width or height is accepted, meaning no change in that dimension.
|
| |
_jmol.alerted = true;
|
| |
var applet = _jmolGetApplet(targetSuffix);
|
| |
if(!applet)return;
|
| |
var sz = _jmolGetAppletSize(size, "px");
|
| |
sz[0] && (applet.style.width = sz[0]);
|
| |
sz[1] && (applet.style.height = sz[1]);
|
| |
}
|
| |
|
| |
function _jmolGetAppletSize(size, units) {
|
| |
/* Accepts single number or 2-value array, each one can be one of:
|
| |
percent (text string ending %), decimal 0 to 1 (percent/100), number, or text string (interpreted as nr.)
|
| |
[width, height] array of strings is returned, with units added if specified.
|
| |
Percent is relative to container div or element (which should have explicitly set size).
|
| |
*/
|
| |
var width, height;
|
| |
if ( (typeof size) == "object" && size != null ) {
|
| |
width = size[0]; height = size[1];
|
| |
} else {
|
| |
width = height = size;
|
| |
}
|
| |
return [_jmolFixDim(width, units), _jmolFixDim(height, units)];
|
| |
}
|
| |
|
| |
function _jmolFixDim(x, units) {
|
| |
var sx = "" + x;
|
| |
return (sx.length == 0 ? (units ? "" : _jmol.allowedJmolSize[2])
|
| |
: sx.indexOf("%") == sx.length-1 ? sx
|
| |
: (x = parseFloat(x)) <= 1 && x > 0 ? x * 100 + "%"
|
| |
: (isNaN(x = Math.floor(x)) ? _jmol.allowedJmolSize[2]
|
| |
: x < _jmol.allowedJmolSize[0] ? _jmol.allowedJmolSize[0]
|
| |
: x > _jmol.allowedJmolSize[1] ? _jmol.allowedJmolSize[1]
|
| |
: x) + (units ? units : ""));
|
| |
}
|
| |
|
| |
|
| |
|
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