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A

activateMarkerColor(int) - Method in class export.client.JSME
Choose the background color to be used for the atom or bond.
addClickHandler(JsClosureJsme) - Method in class export.client.JSME
Add a click handler to a JSME instance.
addMouseDownHandler(JsClosureJsme) - Method in class export.client.JSME
Add a mouse down handler to a JSME instance.
addMouseOutHandler(JsClosureJsme) - Method in class export.client.JSME
Add a mouse out handler to a JSME instance.
addMouseOverHandler(JsClosureJsme) - Method in class export.client.JSME
Add a mouse over handler to a JSME instance.
alert(String) - Method in class export.client.JSME
Display an alert box with the look and feel of JSME

C

clear() - Method in class export.client.JSME
Same effect as clicking on the clear icon: clear the molecular drawing area
clearFontCache() - Static method in class export.client.JSME
JSME computes font height and string width to display text in SVG (or VML).

D

deferredRepaint() - Method in class export.client.JSME
Repaint the applet after the browser event loop returns.

E

export.client - package export.client
 

G

getAlldefinedCallBackNames() - Method in class export.client.JSME
Return an array containing all possible callback names.
getAllGraphicsString() - Method in class export.client.JSME
Returns all graphics representations used in the applet, either a SVG or a VML string This is an advanced feature.
getAtomAdditionalData(int) - Method in class export.client.JSME
Retrieve the javaScript object that was stored in the JSME atom object or null
getBackGroundColorPalette() - Method in class export.client.JSME
Returns the list of colors used for highlighting atoms and bonds (background color) in hexadecimal format
getBondAdditionalData(int) - Method in class export.client.JSME
Retrieve the javaScript object that was stored in the JSME bond object or null
getCallBack(String) - Method in class export.client.JSME
Generic callback
getCreationIndex() - Method in class export.client.JSME
The JSME class keeps tract of the number of instance that have been created.
getHelpURL() - Method in class export.client.JSME
 
getMenuScale() - Method in class export.client.JSME
 
getMenuXShortcuts() - Method in class export.client.JSME
Get the custom keyboard shortcuts letters that have been set using the JSME.setMenuXShortcuts(String) method
getMolecularAreaAntiAlias() - Method in class export.client.JSME
Return the antialias setting for the molecular drawing area
getMolecularAreaGraphicsString() - Method in class export.client.JSME
Returns the graphics representation used in the molecular area, either a SVG or a VML string This is an advanced feature.
getMolecularAreaLineWidth() - Method in class export.client.JSME
 
getMolecularAreaScale() - Method in class export.client.JSME
 
getMultiSDFstack() - Method in class export.client.JSME
JSME accepts a SDF with multiple records.
getNewButtonStatus() - Method in class export.client.JSME
Get the status of the NEW button in the GUI.
getNotifyStructuralChangeJSfunction() - Method in class export.client.JSME
Deprecated.
getNumberOfColorsForBackGroundPalette() - Method in class export.client.JSME
Returns the number of colors used for highlighting atoms and bonds (background color)
getOffsetHeight() - Method in class export.client.JSME
Gets the object's offset height in pixels.
getOffsetSize() - Method in class export.client.JSME
Gets the object's offset width and height in pixels.
getOffsetWidth() - Method in class export.client.JSME
Gets the object's offset width in pixels.
getParentContainer() - Method in class export.client.JSME
Return the parent DOM element that contains myself.
getPasteLabel() - Method in class export.client.JSME
getPrePasteJSfunction() - Method in class export.client.JSME
 
getWebSearchInchiKeyBaseUrl() - Method in class export.client.JSME
 

H

hasMarkedAtom() - Method in class export.client.JSME
Return true if at least one of the atom has a marking or an atom map > 0
hasMolecule() - Method in class export.client.JSME
Return true if the drawing canvas contains at least an atom

I

initializationError(String) - Method in class export.client.JSME
 
isDepictMode() - Method in class export.client.JSME
 
isVisible() - Method in class export.client.JSME
Returns whether the given element is visible in a way consistent with JSME.setVisible(boolean).

J

jmeFile() - Method in class export.client.JSME
 
JSME - Class in export.client
 
JSME(String, String, String) - Constructor for class export.client.JSME
 
JSME(String) - Constructor for class export.client.JSME
 
JSME(String, String, String, JavaScriptObject) - Constructor for class export.client.JSME
parameters is a JavaScript object for additional customization, e.g.
JSME(String, JavaScriptObject) - Constructor for class export.client.JSME
/**

M

molFile(boolean) - Method in class export.client.JSME
 
molFile() - Method in class export.client.JSME
 

N

nonisomericSmiles() - Method in class export.client.JSME
 

O

options(String) - Method in class export.client.JSME
options is a comma separated value list - same as original JME

R

read_MOL_SDF_RXN(String) - Method in class export.client.JSME
Deprecated.
readGenericMolecularInput(String) - Method in class export.client.JSME
 
readGenericMolecularInput(String, boolean) - Method in class export.client.JSME
 
readMolecule(String) - Method in class export.client.JSME
Read a molecular structure encoded in JME format.
readMolFile(String) - Method in class export.client.JSME
Read a molecular structure encoded in MOL format, or a reaction encoded in RXN format.
repaint() - Method in class export.client.JSME
Redraw the whole applet if it is visible
replaceAllAppletsByJSME() - Static method in class export.client.JSME
Scan the DOM for DIV's containing an attribute code="JME.class" and install a running JSME.
replaceAllAppletsByJSME(JsClosure) - Static method in class export.client.JSME
Scan the DOM for DIV's containing an attribute code="JME.class" and install a running JSME.
reset() - Method in class export.client.JSME
 
resetAtomColors(int) - Method in class export.client.JSME
Clear all background colors for all atom of the molecule (fragment) specified by the argument.
resetBondColors(int) - Method in class export.client.JSME
If mol index is 0, then the bond indices are valid for the molecular ensemble Reset background colors
runAfterBrowserEventLoopReturns(JavaScriptObject) - Static method in class export.client.Utils
Run some Javascript code after the browser event loop returns.
runAfterFixedDelay(JavaScriptObject, int) - Static method in class export.client.Utils
Run some Javascript code after the browser event loop returns.

S

safeLog(String) - Static method in class export.client.Utils
console.log tested on Chrome with success On IE: the console is not available unless debugger is on: causes an exception.
setAction(int) - Method in class export.client.JSME
select one of the menu action without having to click on the menu.
setAfterDepictEditToggleEventHandler(JsClosureJsme) - Method in class export.client.JSME
 
setAfterPasteCallback(JavaScriptObject) - Method in class export.client.JSME
Deprecated.
setAfterStructureModifiedCallback(JavaScriptObject) - Method in class export.client.JSME
Deprecated.
setAntialias(boolean) - Method in class export.client.JSME
Set globally antialias
setAtomAdditionalData(int, JavaScriptObject, boolean, boolean) - Method in class export.client.JSME
Store any javaScript object in the JSME atom object
setAtomBackgroundColors(int, String) - Method in class export.client.JSME
If mol index is 0, then the atom indices are valid for the molecular ensemble.
setAtomMolecularAreaFontSize(float) - Method in class export.client.JSME
 
setAtomToHighLight(int, int) - Method in class export.client.JSME
Highlight atom like a mouse over.
setBackGroundColorPalette(String[]) - Method in class export.client.JSME
Set the list of colors used for highlighting atoms and bonds (background color) in hexadecimal format
setBeforePasteCallback(JavaScriptObject) - Method in class export.client.JSME
Deprecated.
setBondAdditionalData(int, JavaScriptObject, boolean, boolean) - Method in class export.client.JSME
Store any javaScript object in the JSME bond object
setBondBackgroundColors(int, String) - Method in class export.client.JSME
If mol index is 0, then the bond indices are valid for the molecular ensemble.
setBondToHighLight(int, int) - Method in class export.client.JSME
Highlight bond like a mouse over.
setCallBack(String, JavaScriptObject) - Method in class export.client.JSME
Generic call back.
setHeight(String) - Method in class export.client.JSME
Sets the object's height.
setHelpURL(String) - Method in class export.client.JSME
set the url to display the JSME help page.
setMarkerColor(String) - Method in class export.client.JSME
Deprecated.
setMarkerMenuBackGroundColorPalette(<any>) - Method in class export.client.JSME
Set the list of colors used for highlighting atoms and bonds (background color) in hexadecimal format provide a name for each color that will be shown in the marker pop up menu, the markerMenu option must be set.
setMenuScale(double) - Method in class export.client.JSME
 
setMenuXShortcuts(String) - Method in class export.client.JSME
Specify custom keyboard shortcuts letters for the X menu box.
setMolecularAreaAntiAlias(boolean) - Method in class export.client.JSME
Set antialias for the molecular drawing area
setMolecularAreaLineWidth(float) - Method in class export.client.JSME
Line width in pixel
setMolecularAreaScale(double) - Method in class export.client.JSME
 
setNewButtonStatus(boolean) - Method in class export.client.JSME
Set the status of the NEW button in the GUI.
setNotifyAtomHighLightChangeJSfunction(String) - Method in class export.client.JSME
Deprecated.
setNotifyStructuralChangeJSfunction(String) - Method in class export.client.JSME
Deprecated.
setPasteLabel(String) - Method in class export.client.JSME
Set the label of the context popup menu for pasting string, instead of using the default label.
setPrePasteJSfunction(String) - Method in class export.client.JSME
Deprecated.
setSize(String, String) - Method in class export.client.JSME
Sets the object's size.
setSize(int, int) - Method in class export.client.JSME
Sets the object's size.
setSize(String, String, boolean) - Method in class export.client.JSME
Sets the object's size.
setSize(int, int, boolean) - Method in class export.client.JSME
Sets the object's size.
setStarColor(String) - Method in class export.client.JSME
Deprecated.
setSubstituent(String) - Method in class export.client.JSME
Select the next FG to be used.
setTemplate(String, String) - Method in class export.client.JSME
Provide a template, a molecular fragment with one marked atom, in JME format.
setUserInterfaceBackgroundColor(String) - Method in class export.client.JSME
Choose another background color for the GUI frame and the dialog boxes
setVisible(boolean) - Method in class export.client.JSME
Shows or hides the given element.
setWebSearchInchiKeyBaseUrl(String) - Method in class export.client.JSME
Set the base url for inchi key search.
setWidth(String) - Method in class export.client.JSME
Sets the object's width.
showInfo(String) - Method in class export.client.JSME
Display a message in the bottom bar.
smiles() - Method in class export.client.JSME
 

T

totalNumberOfAtoms() - Method in class export.client.JSME
 
totalNumberOfBonds() - Method in class export.client.JSME
 

U

Utils - Class in export.client
 
Utils() - Constructor for class export.client.Utils
 
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