--- loncom/interface/loncommon.pm	2008/03/18 23:00:51	1.636.2.3
+++ loncom/interface/loncommon.pm	2008/09/05 19:20:39	1.681
@@ -1,7 +1,7 @@
 # The LearningOnline Network with CAPA
 # a pile of common routines
 #
-# $Id: loncommon.pm,v 1.636.2.3 2008/03/18 23:00:51 raeburn Exp $
+# $Id: loncommon.pm,v 1.681 2008/09/05 19:20:39 riegler Exp $
 #
 # Copyright Michigan State University Board of Trustees
 #
@@ -67,6 +67,7 @@ use Apache::loncoursedata();
 use Apache::lontexconvert();
 use Apache::lonclonecourse();
 use LONCAPA qw(:DEFAULT :match);
+use DateTime::TimeZone;
 
 # ---------------------------------------------- Designs
 use vars qw(%defaultdesign);
@@ -78,6 +79,76 @@ my $readit;
 ## Global Variables
 ##
 
+
+# ----------------------------------------------- SSI with retries:
+#
+
+=pod
+
+=head1 Server Side include with retries:
+
+=over 4
+
+=item * &ssi_with_retries(resource,retries form)
+
+Performs an ssi with some number of retries.  Retries continue either
+until the result is ok or until the retry count supplied by the
+caller is exhausted.  
+
+Inputs:
+
+=over 4
+
+resource   - Identifies the resource to insert.
+
+retries    - Count of the number of retries allowed.
+
+form       - Hash that identifies the rendering options.
+
+=back
+
+Returns:
+
+=over 4
+
+content    - The content of the response.  If retries were exhausted this is empty.
+
+response   - The response from the last attempt (which may or may not have been successful.
+
+=back
+
+=back
+
+=cut
+
+sub ssi_with_retries {
+    my ($resource, $retries, %form) = @_;
+
+
+    my $ok = 0;			# True if we got a good response.
+    my $content;
+    my $response;
+
+    # Try to get the ssi done. within the retries count:
+
+    do {
+	($content, $response) = &Apache::lonnet::ssi($resource, %form);
+	$ok      = $response->is_success;
+        if (!$ok) {
+            &Apache::lonnet::logthis("Failed ssi_with_retries on $resource: ".$response->is_success.', '.$response->code.', '.$response->message);
+        }
+	$retries--;
+    } while (!$ok && ($retries > 0));
+
+    if (!$ok) {
+	$content = '';		# On error return an empty content.
+    }
+    return ($content, $response);
+
+}
+
+
+
 # ----------------------------------------------- Filetypes/Languages/Copyright
 my %language;
 my %supported_language;
@@ -214,14 +285,14 @@ BEGIN {
 
 =over 4
 
-=item * browser_and_searcher_javascript ()
+=item * &browser_and_searcher_javascript()
 
 X<browsing, javascript>X<searching, javascript>Returns a string
 containing javascript with two functions, C<openbrowser> and
 C<opensearcher>. Returned string does not contain E<lt>scriptE<gt>
 tags.
 
-=item * openbrowser(formname,elementname,only,omit) [javascript]
+=item * &openbrowser(formname,elementname,only,omit) [javascript]
 
 inputs: formname, elementname, only, omit
 
@@ -234,7 +305,7 @@ with the given extension.  Can be a comm
 Specifying 'omit' will restrict the browser to NOT displaying files
 with the given extension.  Can be a comma separated list.
 
-=item * opensearcher(formname, elementname) [javascript]
+=item * &opensearcher(formname,elementname) [javascript]
 
 Inputs: formname, elementname
 
@@ -319,7 +390,7 @@ sub storeresurl {
     unless ($resurl=~/^\/res/) { return 0; }
     $resurl=~s/\/$//;
     &Apache::lonnet::put('environment',{'lastresurl' => $resurl});
-    &Apache::lonnet::appenv('environment.lastresurl' => $resurl);
+    &Apache::lonnet::appenv({'environment.lastresurl' => $resurl});
     return 1;
 }
 
@@ -377,6 +448,25 @@ sub selectstudent_link {
    return '';
 }
 
+sub authorbrowser_javascript {
+    return <<"ENDAUTHORBRW";
+<script type="text/javascript">
+var stdeditbrowser;
+
+function openauthorbrowser(formname,udom) {
+    var url = '/adm/pickauthor?';
+    url += 'form='+formname+'&roledom='+udom;
+    var title = 'Author_Browser';
+    var options = 'scrollbars=1,resizable=1,menubar=0';
+    options += ',width=700,height=600';
+    stdeditbrowser = open(url,title,options,'1');
+    stdeditbrowser.focus();
+}
+
+</script>
+ENDAUTHORBRW
+}
+
 sub coursebrowser_javascript {
     my ($domainfilter,$sec_element,$formname)=@_;
     my $crs_or_grp_alert = &mt('Please select the type of LON-CAPA entity - Course or Group - for which you wish to add/modify a user role');
@@ -514,6 +604,12 @@ sub selectcourse_link {
         '","'.$udomele.'","'.$desc.'","'.$extra_element.'","'.$multflag.'","'.$selecttype.'");'."'>".&mt('Select Course')."</a>";
 }
 
+sub selectauthor_link {
+   my ($form,$udom)=@_;
+   return '<a href="javascript:openauthorbrowser('."'$form','$udom'".');">'.
+          &mt('Select Author').'</a>';
+}
+
 sub check_uncheck_jscript {
     my $jscript = <<"ENDSCRT";
 function checkAll(field) {
@@ -539,10 +635,31 @@ ENDSCRT
     return $jscript;
 }
 
+sub select_timezone {
+   my ($name,$selected,$onchange,$includeempty)=@_;
+   my $output='<select name="'.$name.'" '.$onchange.'>'."\n";
+   if ($includeempty) {
+       $output .= '<option value=""';
+       if (($selected eq '') || ($selected eq 'local')) {
+           $output .= ' selected="selected" ';
+       }
+       $output .= '> </option>';
+   }
+   my @timezones = DateTime::TimeZone->all_names;
+   foreach my $tzone (@timezones) {
+       $output.= '<option value="'.$tzone.'"';
+       if ($tzone eq $selected) {
+           $output.=' selected="selected"';
+       }
+       $output.=">$tzone</option>\n";
+   }
+   $output.="</select>";
+   return $output;
+}
 
 =pod
 
-=item * linked_select_forms(...)
+=item * &linked_select_forms(...)
 
 linked_select_forms returns a string containing a <script></script> block
 and html for two <select> menus.  The select menus will be linked in that
@@ -707,7 +824,7 @@ END
 
 =pod
 
-=item * help_open_topic($topic, $text, $stayOnPage, $width, $height)
+=item * &help_open_topic($topic,$text,$stayOnPage,$width,$height)
 
 Returns a string corresponding to an HTML link to the given help
 $topic, where $topic corresponds to the name of a .tex file in
@@ -761,7 +878,7 @@ sub help_open_topic {
 
     # Add the graphic
     my $title = &mt('Online Help');
-    my $helpicon=&lonhttpdurl("/adm/help/gif/smallHelp.gif");
+    my $helpicon=&lonhttpdurl("/adm/help/help.png");
     $template .= <<"ENDTEMPLATE";
  <a target="_top" href="$link" title="$title"><img src="$helpicon" border="0" alt="(Help: $topic)" /></a>
 ENDTEMPLATE
@@ -787,6 +904,9 @@ sub helpLatexCheatsheet {
 	.'</td><td>'.
 	&Apache::loncommon::help_open_topic("Other_Symbols",&mt('Other Symbols'),
 					    undef,undef,600)
+	.'</td><td>'.
+	&Apache::loncommon::help_open_topic("Authoring_Output_Tags",&mt('Output Tags'),
+	                                    undef,undef,600)
 	.'</td></tr></table>';
 }
 
@@ -796,6 +916,8 @@ sub general_help {
 	$helptopic='Authoring_Intro';
     } elsif ($env{'request.role'}=~/^cc/) {
 	$helptopic='Course_Coordination_Intro';
+    } elsif ($env{'request.role'}=~/^dc/) {
+        $helptopic='Domain_Coordination_Intro';
     }
     return $helptopic;
 }
@@ -1017,7 +1139,7 @@ ENDTEMPLATE
 
 =pod
 
-=item * change_content_javascript():
+=item * &change_content_javascript():
 
 This and the next function allow you to create small sections of an
 otherwise static HTML page that you can update on the fly with
@@ -1072,7 +1194,7 @@ DOMBASED
 
 =pod
 
-=item * changable_area($name, $origContent):
+=item * &changable_area($name,$origContent):
 
 This provides a "changable area" that can be modified on the fly via
 the Javascript code provided in C<change_content_javascript>. $name is
@@ -1096,7 +1218,7 @@ sub changable_area {
 
 =pod
 
-=item * viewport_geometry_js {
+=item * &viewport_geometry_js 
 
 Provides javascript object (Geometry) which can provide information about the viewport geometry for the client browser.
 
@@ -1143,7 +1265,7 @@ GEOMETRY
 
 =pod
 
-=item * viewport_size_js {
+=item * &viewport_size_js()
 
 Provides a javascript function to set values of two form elements - width and height (elements are passed in as arguments to the javascript function) to the dimensions of the user's browser window. 
 
@@ -1167,7 +1289,7 @@ DIMS
 
 =pod
 
-=item * resize_textarea_js
+=item * &resize_textarea_js()
 
 emits the needed javascript to resize a textarea to be as big as possible
 
@@ -1176,6 +1298,7 @@ the id of the element to resize, second
 surrounds everything that comes after the textarea, this routine needs
 to be attached to the <body> for the onload and onresize events.
 
+=back
 
 =cut
 
@@ -1228,8 +1351,6 @@ RESIZE
 
 =pod
 
-=back
- 
 =head1 Excel and CSV file utility routines
 
 =over 4
@@ -1241,7 +1362,7 @@ RESIZE
 
 =pod
 
-=item * csv_translate($text) 
+=item * &csv_translate($text) 
 
 Translate $text to allow it to be output as a 'comma separated values' 
 format.
@@ -1262,7 +1383,7 @@ sub csv_translate {
 
 =pod
 
-=item * define_excel_formats
+=item * &define_excel_formats()
 
 Define some commonly used Excel cell formats.
 
@@ -1318,7 +1439,7 @@ sub define_excel_formats {
 
 =pod
 
-=item * create_workbook
+=item * &create_workbook()
 
 Create an Excel worksheet.  If it fails, output message on the
 request object and return undefs.
@@ -1361,7 +1482,7 @@ sub create_workbook {
 
 =pod
 
-=item * create_text_file
+=item * &create_text_file()
 
 Create a file to write to and eventually make available to the user.
 If file creation fails, outputs an error message on the request object and 
@@ -1429,7 +1550,7 @@ sub domain_select {
 
 =over 4
 
-=item * multiple_select_form($name,$value,$size,$hash,$order)
+=item * &multiple_select_form($name,$value,$size,$hash,$order)
 
 Returns a string containing a <select> element int multiple mode
 
@@ -1479,7 +1600,7 @@ sub multiple_select_form {
 
 =pod
 
-=item * select_form($defdom,$name,%hash)
+=item * &select_form($defdom,$name,%hash)
 
 Returns a string containing a <select name='$name' size='1'> form to 
 allow a user to select options from a hash option_name => displayed text.  
@@ -1566,7 +1687,7 @@ sub select_level_form {
 
 =pod
 
-=item * select_dom_form($defdom,$name,$includeempty,$showdomdesc)
+=item * &select_dom_form($defdom,$name,$includeempty,$showdomdesc)
 
 Returns a string containing a <select name='$name' size='1'> form to 
 allow a user to select the domain to preform an operation in.  
@@ -1606,7 +1727,7 @@ sub select_dom_form {
 
 =pod
 
-=item * home_server_form_item($domain,$name,$defaultflag)
+=item * &home_server_form_item($domain,$name,$defaultflag)
 
 input: 4 arguments (two required, two optional) - 
     $domain - domain of new user
@@ -1766,14 +1887,12 @@ sub decode_user_agent {
 
 =over 4
 
-=item * authform_xxxxxx
+=item * &authform_xxxxxx()
 
 The authform_xxxxxx subroutines provide javascript and html forms which 
 handle some of the conveniences required for authentication forms.  
 This is not an optimal method, but it works.  
 
-See loncreateuser.pm for invocation and use examples.
-
 =over 4
 
 =item * authform_header
@@ -1790,7 +1909,7 @@ See loncreateuser.pm for invocation and
 
 =back
 
-=back 
+See loncreateuser.pm for invocation and use examples.
 
 =cut
 
@@ -2242,42 +2361,6 @@ sub get_assignable_auth {
 }
 
 ###############################################################
-##    Get Authentication Defaults for Domain                 ##
-###############################################################
-
-=pod
-
-=head1 Domains and Authentication
-
-Returns default authentication type and an associated argument as
-listed in file 'domain.tab'.
-
-=over 4
-
-=item * get_auth_defaults
-
-get_auth_defaults($target_domain) returns the default authentication
-type and an associated argument (initial password or a kerberos domain).
-These values are stored in lonTabs/domain.tab
-
-($def_auth, $def_arg) = &get_auth_defaults($target_domain);
-
-If target_domain is not found in domain.tab, returns nothing ('').
-
-=cut
-
-#-------------------------------------------
-sub get_auth_defaults {
-    my $domain=shift;
-    return (&Apache::lonnet::domain($domain,'auth_def'),
-	    &Apache::lonnet::domain($domain,'auth_arg_def'));
-	    
-}
-###############################################################
-##   End Get Authentication Defaults for Domain              ##
-###############################################################
-
-###############################################################
 ##    Get Kerberos Defaults for Domain                 ##
 ###############################################################
 ##
@@ -2289,22 +2372,31 @@ sub get_auth_defaults {
 
 =pod
 
-=item * get_kerberos_defaults
+=item * &get_kerberos_defaults()
 
 get_kerberos_defaults($target_domain) returns the default kerberos
-version and domain. If not found in domain.tabs, it defaults to
-version 4 and the domain of the server.
+version and domain. If not found, it defaults to version 4 and the 
+domain of the server.
+
+=over 4
 
 ($def_version, $def_krb_domain) = &get_kerberos_defaults($target_domain);
 
+=back
+
+=back
+
 =cut
 
 #-------------------------------------------
 sub get_kerberos_defaults {
     my $domain=shift;
-    my ($krbdef,$krbdefdom) =
-        &Apache::loncommon::get_auth_defaults($domain);
-    unless ($krbdef =~/^krb/ && $krbdefdom) {
+    my ($krbdef,$krbdefdom);
+    my %domdefaults = &Apache::lonnet::get_domain_defaults($domain);
+    if (($domdefaults{'auth_def'} =~/^krb(4|5)$/) && ($domdefaults{'auth_arg_def'} ne '')) {
+        $krbdef = $domdefaults{'auth_def'};
+        $krbdefdom = $domdefaults{'auth_arg_def'};
+    } else {
         $ENV{'SERVER_NAME'}=~/(\w+\.\w+)$/;
         my $krbdefdom=$1;
         $krbdefdom=~tr/a-z/A-Z/;
@@ -2313,11 +2405,6 @@ sub get_kerberos_defaults {
     return ($krbdef,$krbdefdom);
 }
 
-=pod
-
-=back
-
-=cut
 
 ###############################################################
 ##                Thesaurus Functions                        ##
@@ -2329,7 +2416,7 @@ sub get_kerberos_defaults {
 
 =over 4
 
-=item * initialize_keywords
+=item * &initialize_keywords()
 
 Initializes the package variable %Keywords if it is empty.  Uses the
 package variable $thesaurus_db_file.
@@ -2374,7 +2461,7 @@ sub initialize_keywords {
 
 =pod
 
-=item * keyword($word)
+=item * &keyword($word)
 
 Returns true if $word is a keyword.  A keyword is a word that appears more 
 than the average number of times in the thesaurus database.  Calls 
@@ -2395,7 +2482,7 @@ sub keyword {
 
 =pod 
 
-=item * get_related_words
+=item * &get_related_words()
 
 Look up a word in the thesaurus.  Takes a scalar argument and returns
 an array of words.  If the keyword is not in the thesaurus, an empty array
@@ -2453,7 +2540,7 @@ sub get_related_words {
 
 =over 4
 
-=item * plainname($uname,$udom,$first)
+=item * &plainname($uname,$udom,$first)
 
 Takes a users logon name and returns it as a string in
 "first middle last generation" form 
@@ -2482,7 +2569,7 @@ sub plainname {
 # -------------------------------------------------------------------- Nickname
 =pod
 
-=item * nickname($uname,$udom)
+=item * &nickname($uname,$udom)
 
 Gets a users name and returns it as a string as
 
@@ -2532,18 +2619,21 @@ sub getnames {
 }
 
 # -------------------------------------------------------------------- getemails
+
 =pod
 
-=item * getemails($uname,$udom)
+=item * &getemails($uname,$udom)
 
 Gets a user's email information and returns it as a hash with keys:
 notification, critnotification, permanentemail
 
 For notification and critnotification, values are comma-separated lists 
-of e-mail address(es); for permanentemail, value is a single e-mail address.
+of e-mail addresses; for permanentemail, value is a single e-mail address.
  
+
 =cut
 
+
 sub getemails {
     my ($uname,$udom)=@_;
     if ($udom eq 'public' && $uname eq 'public') {
@@ -2578,7 +2668,7 @@ sub flush_email_cache {
 
 =pod
 
-=item * screenname($uname,$udom)
+=item * &screenname($uname,$udom)
 
 Gets a users screenname and returns it as a string
 
@@ -2674,7 +2764,7 @@ sub student_image_tag {
 
 =over 4
 
-=item * languageids() 
+=item * &languageids() 
 
 returns list of all language ids
 
@@ -2686,7 +2776,7 @@ sub languageids {
 
 =pod
 
-=item * languagedescription() 
+=item * &languagedescription() 
 
 returns description of a specified language id
 
@@ -2711,7 +2801,7 @@ sub supportedlanguagecode {
 
 =pod
 
-=item * copyrightids() 
+=item * &copyrightids() 
 
 returns list of all copyrights
 
@@ -2723,7 +2813,7 @@ sub copyrightids {
 
 =pod
 
-=item * copyrightdescription() 
+=item * &copyrightdescription() 
 
 returns description of a specified copyright id
 
@@ -2735,7 +2825,7 @@ sub copyrightdescription {
 
 =pod
 
-=item * source_copyrightids() 
+=item * &source_copyrightids() 
 
 returns list of all source copyrights
 
@@ -2747,7 +2837,7 @@ sub source_copyrightids {
 
 =pod
 
-=item * source_copyrightdescription() 
+=item * &source_copyrightdescription() 
 
 returns description of a specified source copyright id
 
@@ -2759,7 +2849,7 @@ sub source_copyrightdescription {
 
 =pod
 
-=item * filecategories() 
+=item * &filecategories() 
 
 returns list of all file categories
 
@@ -2771,7 +2861,7 @@ sub filecategories {
 
 =pod
 
-=item * filecategorytypes() 
+=item * &filecategorytypes() 
 
 returns list of file types belonging to a given file
 category
@@ -2785,7 +2875,7 @@ sub filecategorytypes {
 
 =pod
 
-=item * fileembstyle() 
+=item * &fileembstyle() 
 
 returns embedding style for a specified file type
 
@@ -2809,7 +2899,7 @@ sub filecategoryselect {
 
 =pod
 
-=item * filedescription() 
+=item * &filedescription() 
 
 returns description for a specified file type
 
@@ -2823,7 +2913,7 @@ sub filedescription {
 
 =pod
 
-=item * filedescriptionex() 
+=item * &filedescriptionex() 
 
 returns description for a specified file type with
 extra formatting
@@ -2869,10 +2959,14 @@ sub display_languages {
 
 sub preferred_languages {
     my @languages=();
+    if (($env{'request.role.adv'}) && ($env{'form.languages'})) {
+        @languages=(@languages,split(/\s*(\,|\;|\:)\s*/,$env{'form.languages'}));
+    }
     if ($env{'course.'.$env{'request.course.id'}.'.languages'}) {
 	@languages=(@languages,split(/\s*(\,|\;|\:)\s*/,
 	         $env{'course.'.$env{'request.course.id'}.'.languages'}));
     }
+
     if ($env{'environment.languages'}) {
 	@languages=(@languages,
 		    split(/\s*(\,|\;|\:)\s*/,$env{'environment.languages'}));
@@ -2883,21 +2977,15 @@ sub preferred_languages {
 	    map { (split(/\s*;\s*/,$_))[0] } (split(/\s*,\s*/,$browser));
 	push(@languages,@browser);
     }
-    if (&Apache::lonnet::domain($env{'user.domain'},'lang_def')) {
-	@languages=(@languages,
-		    &Apache::lonnet::domain($env{'user.domain'},
-					    'lang_def'));
-    }
-    if (&Apache::lonnet::domain($env{'request.role.domain'},'lang_def')) {
-	@languages=(@languages,
-		    &Apache::lonnet::domain($env{'request.role.domain'},
-					    'lang_def'));
-    }
-    if (&Apache::lonnet::domain($Apache::lonnet::perlvar{'lonDefDomain'},
-				'lang_def')) {
-	@languages=(@languages,
-		    &Apache::lonnet::domain($Apache::lonnet::perlvar{'lonDefDomain'},
-					    'lang_def'));
+
+    foreach my $domtype ($env{'user.domain'},$env{'request.role.domain'},
+                         $Apache::lonnet::perlvar{'lonDefDomain'}) {
+        if ($domtype ne '') {
+            my %domdefs = &Apache::lonnet::get_domain_defaults($domtype);
+            if ($domdefs{'lang_def'} ne '') {
+                push(@languages,$domdefs{'lang_def'});
+            }
+        }
     }
 # turn "en-ca" into "en-ca,en"
     my @genlanguages;
@@ -2947,7 +3035,7 @@ sub languages {
 
 =over 4
 
-=item * get_previous_attempt($symb, $username, $domain, $course,
+=item * &get_previous_attempt($symb, $username, $domain, $course,
     $getattempt, $regexp, $gradesub)
 
 Return string with previous attempt on problem. Arguments:
@@ -3091,7 +3179,7 @@ sub relative_to_absolute {
 
 =pod
 
-=item * get_student_view
+=item * &get_student_view()
 
 show a snapshot of what student was looking at
 
@@ -3110,7 +3198,7 @@ sub get_student_view {
   }
   if (defined($target)) { $form{'grade_target'} = $target; }
   $feedurl=&Apache::lonnet::clutter($feedurl);
-  my $userview=&Apache::lonnet::ssi_body($feedurl,%form);
+  my ($userview,$response)=&Apache::lonnet::ssi_body($feedurl,%form);
   $userview=~s/\<body[^\>]*\>//gi;
   $userview=~s/\<\/body\>//gi;
   $userview=~s/\<html\>//gi;
@@ -3119,12 +3207,44 @@ sub get_student_view {
   $userview=~s/\<\/head\>//gi;
   $userview=~s/action\s*\=/would_be_action\=/gi;
   $userview=&relative_to_absolute($feedurl,$userview);
-  return $userview;
+  if (wantarray) {
+     return ($userview,$response);
+  } else {
+     return $userview;
+  }
+}
+
+sub get_student_view_with_retries {
+  my ($symb,$retries,$username,$domain,$courseid,$target,$moreenv) = @_;
+
+    my $ok = 0;                 # True if we got a good response.
+    my $content;
+    my $response;
+
+    # Try to get the student_view done. within the retries count:
+    
+    do {
+         ($content, $response) = &get_student_view($symb,$username,$domain,$courseid,$target,$moreenv);
+         $ok      = $response->is_success;
+         if (!$ok) {
+            &Apache::lonnet::logthis("Failed get_student_view_with_retries on $symb: ".$response->is_success.', '.$response->code.', '.$response->message);
+         }
+         $retries--;
+    } while (!$ok && ($retries > 0));
+    
+    if (!$ok) {
+       $content = '';          # On error return an empty content.
+    }
+    if (wantarray) {
+       return ($content, $response);
+    } else {
+       return $content;
+    }
 }
 
 =pod
 
-=item * get_student_answers() 
+=item * &get_student_answers() 
 
 show a snapshot of how student was answering problem
 
@@ -3981,7 +4101,7 @@ ENDROLE
         $dc_info = '('.$dc_info.')';
     }
 
-    if ($env{'environment.remote'} eq 'off') {
+    if (($env{'environment.remote'} eq 'off') || ($args->{'suppress_header_logos'})) {
         # No Remote
 	if ($env{'request.state'} eq 'construct') {
 	    $forcereg=1;
@@ -4006,8 +4126,8 @@ ENDROLE
 	    $titleinfo = 
 		&Apache::loncommon::help_open_menu('','',3,'Authoring')
 		.'<b>'.&mt('Construction Space').'</b>:&nbsp;'
-		.'<form name="dirs" method="post" action="'.$formaction.'"'
-		.' target="_top"><tt><b>'
+		.'<form name="dirs" method="post" action="'.$formaction
+		.'" target="_top"><tt><b>'
 		.&Apache::lonhtmlcommon::crumbs($uname.'/'.$parentpath,'_top','/priv','','+1',1)."<font size=\"+1\">$lastitem</font></b></tt><br />"
 		.&Apache::lonhtmlcommon::select_recent('construct','recent','this.form.action=this.form.recent.value;this.form.submit()')
 		.'</form>'
@@ -4373,7 +4493,6 @@ table.LC_docs_path td.LC_docs_path_compo
 td.LC_table_cell_checkbox {
   text-align: center;
 }
-
 table#LC_mainmenu td.LC_mainmenu_column {
     vertical-align: top;
 }
@@ -4387,7 +4506,7 @@ table#LC_mainmenu td.LC_mainmenu_column
 .LC_menubuttons_link {
   text-decoration: none;
 }
-
+#2008--9-5: new menu style sheet.Changed category
 .LC_menubuttons_category {
   color: $font;
   background: $pgbg;
@@ -4454,6 +4573,10 @@ td.LC_menubuttons_img {
   text-align: right;
 }
 
+.LC_roleslog_note {
+  font-size: smaller;
+}
+
 table.LC_aboutme_port {
   border: 0px;
   border-collapse: collapse;
@@ -4777,6 +4900,14 @@ table.LC_pick_box td.LC_pick_box_title {
   width: 184px;
   padding: 8px;
 }
+table.LC_pick_box td.LC_selfenroll_pick_box_title {
+  background: $tabbg;
+  font-weight: bold;
+  text-align: right;
+  width: 350px;
+  padding: 8px;
+}
+
 table.LC_pick_box td.LC_pick_box_value {
   text-align: left;
   padding: 8px;
@@ -5228,6 +5359,32 @@ hr.LC_edit_problem_divide {
   height: 3px;
   border: 0px;
 }
+img.stift{
+  border-width:0;
+  vertical-align:middle;
+}
+
+table#LC_mainmenu{
+ margin-top:10px;
+ width:80%;
+
+}
+
+table#LC_mainmenu td.LC_mainmenu_col_fieldset{
+  vertical-align: top;
+  width: 45%;
+}
+.LC_mainmenu_fieldset_category {
+  color: $font;
+  background: $pgbg;
+  font-family: $sans;
+  font-size: small;
+  font-weight: bold;
+}
+fieldset#LC_mainmenu_fieldset {
+  margin:0px 10px 10px 0px;
+
+}
 END
 }
 
@@ -5321,10 +5478,7 @@ Inputs: none
 
 sub font_settings {
     my $headerstring='';
-    if (($env{'browser.os'} eq 'mac') && (!$env{'browser.mathml'})) { 
-	$headerstring.=
-	    '<meta Content-Type="text/html; charset=x-mac-roman" />';
-    } elsif (!$env{'browser.mathml'} && $env{'browser.unicode'}) {
+    if (!$env{'browser.mathml'} && $env{'browser.unicode'}) {
 	$headerstring.=
 	    '<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />';
     }
@@ -5383,8 +5537,15 @@ sub endheadtag {
 
 Returns a uniform complete <head>..</head> section for LON-CAPA web pages.
 
-Inputs: $title - optional title for the page
-        $head_extra - optional extra HTML to put inside the <head>
+Inputs:
+
+=over 4
+
+$title - optional title for the page
+
+$head_extra - optional extra HTML to put inside the <head>
+
+=back
 
 =cut
 
@@ -5399,44 +5560,54 @@ sub head {
 
 Returns a complete <html> .. <body> section for LON-CAPA web pages.
 
-Inputs: $title - optional title for the page
-        $head_extra - optional extra HTML to incude inside the <head>
-        $args - additional optional args supported are:
-                  only_body      -> is true will set &bodytag() onlybodytag
+Inputs:
+
+=over 4
+
+$title - optional title for the page
+
+$head_extra - optional extra HTML to incude inside the <head>
+
+$args - additional optional args supported are:
+
+=over 8
+
+             only_body      -> is true will set &bodytag() onlybodytag
                                     arg on
-                  no_nav_bar     -> is true will set &bodytag() notopbar arg on
-                  add_entries    -> additional attributes to add to the  <body>
-                  domain         -> force to color decorate a page for a 
+             no_nav_bar     -> is true will set &bodytag() notopbar arg on
+             add_entries    -> additional attributes to add to the  <body>
+             domain         -> force to color decorate a page for a 
                                     specific domain
-                  function       -> force usage of a specific rolish color
+             function       -> force usage of a specific rolish color
                                     scheme
-                  redirect       -> see &headtag()
-                  bgcolor        -> override the default page bg color
-                  js_ready       -> return a string ready for being used in 
+             redirect       -> see &headtag()
+             bgcolor        -> override the default page bg color
+             js_ready       -> return a string ready for being used in 
                                     a javascript writeln
-                  html_encode    -> return a string ready for being used in 
+             html_encode    -> return a string ready for being used in 
                                     a html attribute
-                  force_register -> if is true will turn on the &bodytag()
+             force_register -> if is true will turn on the &bodytag()
                                     $forcereg arg
-                  body_title     -> alternate text to use instead of $title
+             body_title     -> alternate text to use instead of $title
                                     in the title box that appears, this text
                                     is not auto translated like the $title is
-                  frameset       -> if true will start with a <frameset>
+             frameset       -> if true will start with a <frameset>
                                     rather than <body>
-                  no_title       -> if true the title bar won't be shown
-                  skip_phases    -> hash ref of 
+             no_title       -> if true the title bar won't be shown
+             skip_phases    -> hash ref of 
                                     head -> skip the <html><head> generation
                                     body -> skip all <body> generation
-
-                  no_inline_link -> if true and in remote mode, don't show the 
+             no_inline_link -> if true and in remote mode, don't show the 
                                     'Switch To Inline Menu' link
-
-                  no_auto_mt_title -> prevent &mt()ing the title arg
-
-                  inherit_jsmath -> when creating popup window in a page,
+             no_auto_mt_title -> prevent &mt()ing the title arg
+             inherit_jsmath -> when creating popup window in a page,
                                     should it have jsmath forced on by the
                                     current page
 
+=back
+
+=back
+
 =cut
 
 sub start_page {
@@ -6662,12 +6833,16 @@ sub instrule_disallow_msg {
             $text{'action'} = 'IDs';
         }
     }
-    $response = &mt("The $text{'item'} you chose $text{'match'} the format of $text{'items'} defined for <span class=\"LC_cusr_emph\">[_1]</span>, but the $text{'item'} $text{'do'} not exist in the institutional directory.",$domdesc).'<br />';
+    $response = &mt("The $text{'item'} you chose $text{'match'} the format of $text{'items'} defined for [_1], but the $text{'item'} $text{'do'} not exist in the institutional directory.",'<span class="LC_cusr_emph">'.$domdesc.'</span>').'<br />';
     if ($mode eq 'upload') {
         if ($checkitem eq 'username') {
             $response .= &mt("You will need to modify your upload file so it will include $text{'action'} with a different format --  $text{'one'} that will not conflict with 'official' institutional $text{'items'}.");
         } elsif ($checkitem eq 'id') {
-            $response .= &mt("Either upload a file which includes $text{'action'} with a different format --  $text{'one'} that will not conflict with 'official' institutional $text{'items'}, or when associating fields with data columns, omit an association for the ID/Student Number field.");
+            $response .= &mt("Either upload a file which includes $text{'action'} with a different format --  $text{'one'} that will not conflict with 'official' institutional $text{'items'}, or when associating fields with data columns, omit an association for the Student/Employee ID field.");
+        }
+    } elsif ($mode eq 'selfcreate') {
+        if ($checkitem eq 'id') {
+            $response .= &mt("You must either choose $text{'action'} with a different format --  $text{'one'} that will not conflict with 'official' institutional $text{'items'}, or leave the ID field blank.");
         }
     } else {
         if ($checkitem eq 'username') {
@@ -6692,6 +6867,69 @@ sub personal_data_fieldtitles {
     return %fieldtitles;
 }
 
+sub sorted_inst_types {
+    my ($dom) = @_;
+    my ($usertypes,$order) = &Apache::lonnet::retrieve_inst_usertypes($dom);
+    my $othertitle = &mt('All users');
+    if ($env{'request.course.id'}) {
+        $othertitle  = &mt('Any users');
+    }
+    my @types;
+    if (ref($order) eq 'ARRAY') {
+        @types = @{$order};
+    }
+    if (@types == 0) {
+        if (ref($usertypes) eq 'HASH') {
+            @types = sort(keys(%{$usertypes}));
+        }
+    }
+    if (keys(%{$usertypes}) > 0) {
+        $othertitle = &mt('Other users');
+    }
+    return ($othertitle,$usertypes,\@types);
+}
+
+sub get_institutional_codes {
+    my ($settings,$allcourses,$LC_code) = @_;
+# Get complete list of course sections to update
+    my @currsections = ();
+    my @currxlists = ();
+    my $coursecode = $$settings{'internal.coursecode'};
+
+    if ($$settings{'internal.sectionnums'} ne '') {
+        @currsections = split(/,/,$$settings{'internal.sectionnums'});
+    }
+
+    if ($$settings{'internal.crosslistings'} ne '') {
+        @currxlists = split(/,/,$$settings{'internal.crosslistings'});
+    }
+
+    if (@currxlists > 0) {
+        foreach (@currxlists) {
+            if (m/^([^:]+):(\w*)$/) {
+                unless (grep/^$1$/,@{$allcourses}) {
+                    push @{$allcourses},$1;
+                    $$LC_code{$1} = $2;
+                }
+            }
+        }
+    }
+ 
+    if (@currsections > 0) {
+        foreach (@currsections) {
+            if (m/^(\w+):(\w*)$/) {
+                my $sec = $coursecode.$1;
+                my $lc_sec = $2;
+                unless (grep/^$sec$/,@{$allcourses}) {
+                    push @{$allcourses},$sec;
+                    $$LC_code{$sec} = $lc_sec;
+                }
+            }
+        }
+    }
+    return;
+}
+
 =pod
 
 =back
@@ -6700,7 +6938,7 @@ sub personal_data_fieldtitles {
 
 =over 4
 
-=item * get_unprocessed_cgi($query,$possible_names)
+=item * &get_unprocessed_cgi($query,$possible_names)
 
 Modify the %env hash to contain unprocessed CGI form parameters held in
 $query.  The parameters listed in $possible_names (an array reference),
@@ -6729,7 +6967,7 @@ sub get_unprocessed_cgi {
 
 =pod
 
-=item * cacheheader() 
+=item * &cacheheader() 
 
 returns cache-controlling header code
 
@@ -6746,7 +6984,7 @@ sub cacheheader {
 
 =pod
 
-=item * no_cache($r) 
+=item * &no_cache($r) 
 
 specifies header code to not have cache
 
@@ -6782,7 +7020,7 @@ sub content_type {
 
 =pod
 
-=item * add_to_env($name,$value) 
+=item * &add_to_env($name,$value) 
 
 adds $name to the %env hash with value
 $value, if $name already exists, the entry is converted to an array
@@ -6809,7 +7047,7 @@ sub add_to_env {
 
 =pod
 
-=item * get_env_multiple($name) 
+=item * &get_env_multiple($name) 
 
 gets $name from the %env hash, it seemlessly handles the cases where multiple
 values may be defined and end up as an array ref.
@@ -6832,6 +7070,232 @@ sub get_env_multiple {
     return(@values);
 }
 
+sub ask_for_embedded_content {
+    my ($actionurl,$state,$allfiles,$codebase,$args)=@_;
+    my $upload_output = '
+   <form name="upload_embedded" action="'.$actionurl.'"
+                  method="post" enctype="multipart/form-data">';
+    $upload_output .= $state;
+    $upload_output .= '<b>Upload embedded files</b>:<br />'.&start_data_table();
+
+    my $num = 0;
+    foreach my $embed_file (sort {lc($a) cmp lc($b)} keys(%{$allfiles})) {
+        $upload_output .= &start_data_table_row().
+            '<td>'.$embed_file.'</td><td>';
+        if ($args->{'ignore_remote_references'}
+            && $embed_file =~ m{^\w+://}) {
+            $upload_output.='<span class="LC_warning">'.&mt("URL points to other server.").'</span>';
+        } elsif ($args->{'error_on_invalid_names'}
+            && $embed_file ne &Apache::lonnet::clean_filename($embed_file,{'keep_path' => 1,})) {
+
+            $upload_output.='<span class="LC_warning">'.&mt("Invalid characters").'</span>';
+
+        } else {
+            $upload_output .='
+           <input name="embedded_item_'.$num.'" type="file" value="" />
+           <input name="embedded_orig_'.$num.'" type="hidden" value="'.&escape($embed_file).'" />';
+            my $attrib = join(':',@{$$allfiles{$embed_file}});
+            $upload_output .=
+                "\n\t\t".
+                '<input name="embedded_attrib_'.$num.'" type="hidden" value="'.
+                $attrib.'" />';
+            if (exists($$codebase{$embed_file})) {
+                $upload_output .=
+                    "\n\t\t".
+                    '<input name="codebase_'.$num.'" type="hidden" value="'.
+                    &escape($$codebase{$embed_file}).'" />';
+            }
+        }
+        $upload_output .= '</td>'.&Apache::loncommon::end_data_table_row();
+        $num++;
+    }
+    $upload_output .= &Apache::loncommon::end_data_table().'<br />
+   <input type ="hidden" name="number_embedded_items" value="'.$num.'" />
+   <input type ="submit" value="'.&mt('Upload Listed Files').'" />
+   '.&mt('(only files for which a location has been provided will be uploaded)').'
+   </form>';
+    return $upload_output;
+}
+
+sub upload_embedded {
+    my ($context,$dirpath,$uname,$udom,$dir_root,$url_root,$group,$disk_quota,
+        $current_disk_usage) = @_;
+    my $output;
+    for (my $i=0; $i<$env{'form.number_embedded_items'}; $i++) {
+        next if (!exists($env{'form.embedded_item_'.$i.'.filename'}));
+        my $orig_uploaded_filename =
+            $env{'form.embedded_item_'.$i.'.filename'};
+
+        $env{'form.embedded_orig_'.$i} =
+            &unescape($env{'form.embedded_orig_'.$i});
+        my ($path,$fname) =
+            ($env{'form.embedded_orig_'.$i} =~ m{(.*/)([^/]*)});
+        # no path, whole string is fname
+        if (!$fname) { $fname = $env{'form.embedded_orig_'.$i} };
+
+        $path = $env{'form.currentpath'}.$path;
+        $fname = &Apache::lonnet::clean_filename($fname);
+        # See if there is anything left
+        next if ($fname eq '');
+
+        # Check if file already exists as a file or directory.
+        my ($state,$msg);
+        if ($context eq 'portfolio') {
+            my $port_path = $dirpath;
+            if ($group ne '') {
+                $port_path = "groups/$group/$port_path";
+            }
+            ($state,$msg) = &check_for_upload($path,$fname,$group,'embedded_item_'.$i,
+                                              $dir_root,$port_path,$disk_quota,
+                                              $current_disk_usage,$uname,$udom);
+            if ($state eq 'will_exceed_quota'
+                || $state eq 'file_locked'
+                || $state eq 'file_exists' ) {
+                $output .= $msg;
+                next;
+            }
+        } elsif (($context eq 'author') || ($context eq 'testbank')) {
+            ($state,$msg) = &check_for_existing($path,$fname,'embedded_item_'.$i);
+            if ($state eq 'exists') {
+                $output .= $msg;
+                next;
+            }
+        }
+        # Check if extension is valid
+        if (($fname =~ /\.(\w+)$/) &&
+            (&Apache::loncommon::fileembstyle($1) eq 'hdn')) {
+            $output .= &mt('Invalid file extension ([_1]) - reserved for LONCAPA use - rename the file with a different extension and re-upload. ',$1);
+            next;
+        } elsif (($fname =~ /\.(\w+)$/) &&
+                 (!defined(&Apache::loncommon::fileembstyle($1)))) {
+            $output .= &mt('Unrecognized file extension ([_1]) - rename the file with a proper extension and re-upload.',$1);
+            next;
+        } elsif ($fname=~/\.(\d+)\.(\w+)$/) {
+            $output .= &mt('File name not allowed - rename the file to remove the number immediately before the file extension([_1]) and re-upload.',$2);
+            next;
+        }
+
+        $env{'form.embedded_item_'.$i.'.filename'}=$fname;
+        if ($context eq 'portfolio') {
+            my $result=
+                &Apache::lonnet::userfileupload('embedded_item_'.$i,'',
+                                                $dirpath.$path);
+            if ($result !~ m|^/uploaded/|) {
+                $output .= '<span class="LC_error">'
+                      .&mt('An error occurred ([_1]) while trying to upload [_2] for embedded element [_3].'
+                           ,$result,$orig_uploaded_filename,$env{'form.embedded_orig_'.$i})
+                      .'</span><br />';
+                next;
+            } else {
+                $output .= '<p>'.&mt('Uploaded [_1]','<span class="LC_filename">'.
+                           $path.$fname.'</span>').'</p>';     
+            }
+        } else {
+# Save the file
+            my $target = $env{'form.embedded_item_'.$i};
+            my $fullpath = $dir_root.$dirpath.'/'.$path;
+            my $dest = $fullpath.$fname;
+            my $url = $url_root.$dirpath.'/'.$path.$fname;
+            my @parts=split(/\//,$fullpath);
+            my $count;
+            my $filepath = $dir_root;
+            for ($count=4;$count<=$#parts;$count++) {
+                $filepath .= "/$parts[$count]";
+                if ((-e $filepath)!=1) {
+                    mkdir($filepath,0770);
+                }
+            }
+            my $fh;
+            if (!open($fh,'>'.$dest)) {
+                &Apache::lonnet::logthis('Failed to create '.$dest);
+                $output .= '<span class="LC_error">'.
+                           &mt('An error occurred while trying to upload [_1] for embedded element [_2].',$orig_uploaded_filename,$env{'form.embedded_orig_'.$i}).
+                           '</span><br />';
+            } else {
+                if (!print $fh $env{'form.embedded_item_'.$i}) {
+                    &Apache::lonnet::logthis('Failed to write to '.$dest);
+                    $output .= '<span class="LC_error">'.
+                              &mt('An error occurred while writing the file [_1] for embedded element [_2].',$orig_uploaded_filename,$env{'form.embedded_orig_'.$i}).
+                              '</span><br />';
+                } else {
+                    if ($context eq 'testbank') {
+                        $output .= &mt('Embedded file uploaded successfully:').
+                                   '&nbsp;<a href="'.$url.'">'.
+                                   $orig_uploaded_filename.'</a><br />';
+                    } else {
+                        $output .= '<font size="+2">'.
+                                   &mt('View embedded file: [_1]','<a href="'.$url.'">'.
+                                   $orig_uploaded_filename.'</a>').'</font><br />';
+                    }
+                }
+                close($fh);
+            }
+        }
+    }
+    return $output;
+}
+
+sub check_for_existing {
+    my ($path,$fname,$element) = @_;
+    my ($state,$msg);
+    if (-d $path.'/'.$fname) {
+        $state = 'exists';
+        $msg = &mt('Unable to upload [_1]. A directory by that name was found in [_2].','<span class="LC_filename">'.$fname.'</span>',$path);
+    } elsif (-e $path.'/'.$fname) {
+        $state = 'exists';
+        $msg = &mt('Unable to upload [_1]. A file by that name was found in [_2].','<span class="LC_filename">'.$fname.'</span>',$path);
+    }
+    if ($state eq 'exists') {
+        $msg = '<span class="LC_error">'.$msg.'</span><br />';
+    }
+    return ($state,$msg);
+}
+
+sub check_for_upload {
+    my ($path,$fname,$group,$element,$portfolio_root,$port_path,
+        $disk_quota,$current_disk_usage,$uname,$udom) = @_;
+    my $filesize = (length($env{'form.'.$element})) / 1000; #express in k (1024?)
+    my $getpropath = 1;
+    my @dir_list = &Apache::lonnet::dirlist($portfolio_root.$path,$udom,$uname,
+                                            $getpropath);
+    my $found_file = 0;
+    my $locked_file = 0;
+    foreach my $line (@dir_list) {
+        my ($file_name)=split(/\&/,$line,2);
+        if ($file_name eq $fname){
+            $file_name = $path.$file_name;
+            if ($group ne '') {
+                $file_name = $group.$file_name;
+            }
+            $found_file = 1;
+            if (&Apache::lonnet::is_locked($file_name,$udom,$uname) eq 'true') {
+                $locked_file = 1;
+            }
+        }
+    }
+    if (($current_disk_usage + $filesize) > $disk_quota){
+        my $msg = '<span class="LC_error">'.
+                &mt('Unable to upload [_1]. (size = [_2] kilobytes). Disk quota will be exceeded.','<span class="LC_filename">'.$fname.'</span>',$filesize).'</span>'.
+                  '<br />'.&mt('Disk quota is [_1] kilobytes. Your current disk usage is [_2] kilobytes.',$disk_quota,$current_disk_usage);
+        return ('will_exceed_quota',$msg);
+    } elsif ($found_file) {
+        if ($locked_file) {
+            my $msg = '<span class="LC_error">';
+            $msg .= &mt('Unable to upload [_1]. A locked file by that name was found in [_2].','<span class="LC_filename">'.$fname.'</span>','<span class="LC_filename">'.$port_path.$env{'form.currentpath'}.'</span>');
+            $msg .= '</span><br />';
+            $msg .= &mt('You will be able to rename or delete existing [_1] after a grade has been assigned.','<span class="LC_filename">'.$fname.'</span>');
+            return ('file_locked',$msg);
+        } else {
+            my $msg = '<span class="LC_error">';
+            $msg .= &mt('Unable to upload [_1]. A file by that name was found in [_2].','<span class="LC_filename">'.$fname.'</span>',$port_path.$env{'form.currentpath'});
+            $msg .= '</span>';
+            $msg .= '<br />';
+            $msg .= &mt('To upload, rename or delete existing [_1] in [_2].','<span class="LC_filename">'.$fname.'</span>', $port_path.$env{'form.currentpath'});
+            return ('file_exists',$msg);
+        }
+    }
+}
+
 
 =pod
 
@@ -6841,7 +7305,7 @@ sub get_env_multiple {
 
 =over 4
 
-=item * upfile_store($r)
+=item * &upfile_store($r)
 
 Store uploaded file, $r should be the HTTP Request object,
 needs $env{'form.upfile'}
@@ -6871,7 +7335,7 @@ sub upfile_store {
 
 =pod
 
-=item * load_tmp_file($r)
+=item * &load_tmp_file($r)
 
 Load uploaded file from tmp, $r should be the HTTP Request object,
 needs $env{'form.datatoken'},
@@ -6895,7 +7359,7 @@ sub load_tmp_file {
 
 =pod
 
-=item * upfile_record_sep()
+=item * &upfile_record_sep()
 
 Separate uploaded file into records
 returns array of records,
@@ -6917,7 +7381,7 @@ sub upfile_record_sep {
 
 =pod
 
-=item * record_sep($record)
+=item * &record_sep($record)
 
 Separate a record into fields $record should be an item from the upfile_record_sep(), needs $env{'form.upfiletype'}
 
@@ -7002,7 +7466,7 @@ sub record_sep {
 
 =pod
 
-=item * upfile_select_html()
+=item * &upfile_select_html()
 
 Return HTML code to select a file from the users machine and specify 
 the file type.
@@ -7049,7 +7513,7 @@ sub get_samples {
 
 =pod
 
-=item * csv_print_samples($r,$records)
+=item * &csv_print_samples($r,$records)
 
 Prints a table of sample values from each column uploaded $r is an
 Apache Request ref, $records is an arrayref from
@@ -7061,7 +7525,7 @@ Apache Request ref, $records is an array
 ######################################################
 sub csv_print_samples {
     my ($r,$records) = @_;
-    my $samples = &get_samples($records,3);
+    my $samples = &get_samples($records,5);
 
     $r->print(&mt('Samples').'<br />'.&start_data_table().
               &start_data_table_header_row());
@@ -7085,7 +7549,7 @@ sub csv_print_samples {
 
 =pod
 
-=item * csv_print_select_table($r,$records,$d)
+=item * &csv_print_select_table($r,$records,$d)
 
 Prints a table to create associations between values and table columns.
 
@@ -7116,7 +7580,7 @@ sub csv_print_select_table {
 	foreach my $sample (sort({$a <=> $b} keys(%{ $samples->[0] }))) {
 	    $r->print('<option value="'.$sample.'"'.
                       ($sample eq $defaultcol ? ' selected="selected" ' : '').
-                      '>Column '.($sample+1).'</option>');
+                      '>'.&mt('Column [_1]',($sample+1)).'</option>');
 	}
 	$r->print('</select></td>'.&end_data_table_row()."\n");
 	$i++;
@@ -7131,7 +7595,7 @@ sub csv_print_select_table {
 
 =pod
 
-=item * csv_samples_select_table($r,$records,$d)
+=item * &csv_samples_select_table($r,$records,$d)
 
 Prints a table of sample values from the upload and can make associate samples to internal names.
 
@@ -7147,7 +7611,8 @@ sub csv_samples_select_table {
     my ($r,$records,$d) = @_;
     my $i=0;
     #
-    my $samples = &get_samples($records,3);
+    my $max_samples = 5;
+    my $samples = &get_samples($records,$max_samples);
     $r->print(&start_data_table().
               &start_data_table_header_row().'<th>'.
               &mt('Field').'</th><th>'.&mt('Samples').'</th>'.
@@ -7163,7 +7628,7 @@ sub csv_samples_select_table {
                       $display.'</option>');
 	}
 	$r->print('</select></td><td>');
-	foreach my $line (0..2) {
+	foreach my $line (0..($max_samples-1)) {
 	    if (defined($samples->[$line]{$key})) { 
 		$r->print($samples->[$line]{$key}."<br />\n"); 
 	    }
@@ -7181,7 +7646,7 @@ sub csv_samples_select_table {
 
 =pod
 
-=item clean_excel_name($name)
+=item * &clean_excel_name($name)
 
 Returns a replacement for $name which does not contain any illegal characters.
 
@@ -7200,7 +7665,7 @@ sub clean_excel_name {
 
 =pod
 
-=item * check_if_partid_hidden($id,$symb,$udom,$uname)
+=item * &check_if_partid_hidden($id,$symb,$udom,$uname)
 
 Returns either 1 or undef
 
@@ -7241,7 +7706,7 @@ sub check_if_partid_hidden {
 
 =over 4
 
-=item get_cgi_id
+=item * &get_cgi_id()
 
 Inputs: none
 
@@ -7265,7 +7730,7 @@ sub get_cgi_id {
 
 =pod
 
-=item DrawBarGraph
+=item * &DrawBarGraph()
 
 Facilitates the plotting of data in a (stacked) bar graph.
 Puts plot definition data into the users environment in order for 
@@ -7400,7 +7865,7 @@ sub DrawBarGraph {
         $ValuesHash{$id.'.'.$key} = $value;
     }
     #
-    &Apache::lonnet::appenv(%ValuesHash);
+    &Apache::lonnet::appenv(\%ValuesHash);
     return '<img src="/cgi-bin/graph.png?'.$identifier.'" border="1" />';
 }
 
@@ -7409,7 +7874,7 @@ sub DrawBarGraph {
 
 =pod
 
-=item DrawXYGraph
+=item * &DrawXYGraph()
 
 Facilitates the plotting of data in an XY graph.
 Puts plot definition data into the users environment in order for 
@@ -7490,7 +7955,7 @@ sub DrawXYGraph {
         $ValuesHash{$id.'.'.$key} = $value;
     }
     #
-    &Apache::lonnet::appenv(%ValuesHash);
+    &Apache::lonnet::appenv(\%ValuesHash);
     return '<img src="/cgi-bin/graph.png?'.$identifier.'" border="1" />';
 }
 
@@ -7499,7 +7964,7 @@ sub DrawXYGraph {
 
 =pod
 
-=item DrawXYYGraph
+=item * &DrawXYYGraph()
 
 Facilitates the plotting of data in an XY graph with two Y axes.
 Puts plot definition data into the users environment in order for 
@@ -7592,7 +8057,7 @@ sub DrawXYYGraph {
         $ValuesHash{$id.'.'.$key} = $value;
     }
     #
-    &Apache::lonnet::appenv(%ValuesHash);
+    &Apache::lonnet::appenv(\%ValuesHash);
     return '<img src="/cgi-bin/graph.png?'.$identifier.'" border="1" />';
 }
 
@@ -7609,7 +8074,7 @@ Bad place for them but what the hell.
 
 =over 4
 
-=item &chartlink
+=item * &chartlink()
 
 Returns a link to the chart for a specific student.  
 
@@ -7648,9 +8113,9 @@ sub chartlink {
 
 =over 4
 
-=item &restore_course_settings 
+=item * &restore_course_settings()
 
-=item &store_course_settings
+=item * &store_course_settings()
 
 Restores/Store indicated form parameters from the course environment.
 Will not overwrite existing values of the form parameters.
@@ -7724,7 +8189,7 @@ sub store_settings {
                                  'got error:'.$put_result);
     }
     # Make sure these settings stick around in this session, too
-    &Apache::lonnet::appenv(%AppHash);
+    &Apache::lonnet::appenv(\%AppHash);
     return;
 }
 
@@ -7761,7 +8226,7 @@ sub restore_settings {
 
 =over 4
 
-=item &build_recipient_list
+=item * &build_recipient_list()
 
 Build recipient lists for three types of e-mail:
 (a) Error Reports, (b) Package Updates, (c) Help requests, generated by
@@ -7774,7 +8239,9 @@ defdom (domain for which to retrieve con
 origmail (scalar - email address of recipient from loncapa.conf, 
 i.e., predates configuration by DC via domainprefs.pm 
 
-Returns: comma separated list of addresses to which to send e-mail.   
+Returns: comma separated list of addresses to which to send e-mail.
+
+=back
 
 =cut
 
@@ -7825,13 +8292,347 @@ sub build_recipient_list {
 ############################################################
 ############################################################
 
+=pod
+
+=head1 Course Catalog Routines
+
+=over 4
+
+=item * &gather_categories()
+
+Converts category definitions - keys of categories hash stored in  
+coursecategories in configuration.db on the primary library server in a 
+domain - to an array.  Also generates javascript and idx hash used to 
+generate Domain Coordinator interface for editing Course Categories.
+
+Inputs:
+
+categories (reference to hash of category definitions).
+
+cats (reference to array of arrays/hashes which encapsulates hierarchy of
+      categories and subcategories).
+
+idx (reference to hash of counters used in Domain Coordinator interface for 
+      editing Course Categories).
+
+jsarray (reference to array of categories used to create Javascript arrays for
+         Domain Coordinator interface for editing Course Categories).
+
+Returns: nothing
+
+Side effects: populates cats, idx and jsarray. 
+
+=cut
+
+sub gather_categories {
+    my ($categories,$cats,$idx,$jsarray) = @_;
+    my %counters;
+    my $num = 0;
+    foreach my $item (keys(%{$categories})) {
+        my ($cat,$container,$depth) = map { &unescape($_); } split(/:/,$item);
+        if ($container eq '' && $depth == 0) {
+            $cats->[$depth][$categories->{$item}] = $cat;
+        } else {
+            $cats->[$depth]{$container}[$categories->{$item}] = $cat;
+        }
+        my ($escitem,$tail) = split(/:/,$item,2);
+        if ($counters{$tail} eq '') {
+            $counters{$tail} = $num;
+            $num ++;
+        }
+        if (ref($idx) eq 'HASH') {
+            $idx->{$item} = $counters{$tail};
+        }
+        if (ref($jsarray) eq 'ARRAY') {
+            push(@{$jsarray->[$counters{$tail}]},$item);
+        }
+    }
+    return;
+}
+
+=pod
+
+=item * &extract_categories()
+
+Used to generate breadcrumb trails for course categories.
+
+Inputs:
+
+categories (reference to hash of category definitions).
+
+cats (reference to array of arrays/hashes which encapsulates hierarchy of
+      categories and subcategories).
+
+trails (reference to array of breacrumb trails for each category).
+
+allitems (reference to hash - key is category key 
+         (format: escaped(name):escaped(parent category):depth in hierarchy).
+
+idx (reference to hash of counters used in Domain Coordinator interface for
+      editing Course Categories).
+
+jsarray (reference to array of categories used to create Javascript arrays for
+         Domain Coordinator interface for editing Course Categories).
+
+subcats (reference to hash of arrays containing all subcategories within each 
+         category, -recursive)
+
+Returns: nothing
+
+Side effects: populates trails and allitems hash references.
+
+=cut
+
+sub extract_categories {
+    my ($categories,$cats,$trails,$allitems,$idx,$jsarray,$subcats) = @_;
+    if (ref($categories) eq 'HASH') {
+        &gather_categories($categories,$cats,$idx,$jsarray);
+        if (ref($cats->[0]) eq 'ARRAY') {
+            for (my $i=0; $i<@{$cats->[0]}; $i++) {
+                my $name = $cats->[0][$i];
+                my $item = &escape($name).'::0';
+                my $trailstr;
+                if ($name eq 'instcode') {
+                    $trailstr = &mt('Official courses (with institutional codes)');
+                } else {
+                    $trailstr = $name;
+                }
+                if ($allitems->{$item} eq '') {
+                    push(@{$trails},$trailstr);
+                    $allitems->{$item} = scalar(@{$trails})-1;
+                }
+                my @parents = ($name);
+                if (ref($cats->[1]{$name}) eq 'ARRAY') {
+                    for (my $j=0; $j<@{$cats->[1]{$name}}; $j++) {
+                        my $category = $cats->[1]{$name}[$j];
+                        if (ref($subcats) eq 'HASH') {
+                            push(@{$subcats->{$item}},&escape($category).':'.&escape($name).':1');
+                        }
+                        &recurse_categories($cats,2,$category,$trails,$allitems,\@parents,$subcats);
+                    }
+                } else {
+                    if (ref($subcats) eq 'HASH') {
+                        $subcats->{$item} = [];
+                    }
+                }
+            }
+        }
+    }
+    return;
+}
+
+=pod
+
+=item *&recurse_categories()
+
+Recursively used to generate breadcrumb trails for course categories.
+
+Inputs:
+
+cats (reference to array of arrays/hashes which encapsulates hierarchy of
+      categories and subcategories).
+
+depth (current depth in hierarchy of categories and sub-categories - 0 indexed).
+
+category (current course category, for which breadcrumb trail is being generated).
+
+trails (reference to array of breadcrumb trails for each category).
+
+allitems (reference to hash - key is category key
+         (format: escaped(name):escaped(parent category):depth in hierarchy).
+
+parents (array containing containers directories for current category, 
+         back to top level). 
+
+Returns: nothing
+
+Side effects: populates trails and allitems hash references
+
+=cut
+
+sub recurse_categories {
+    my ($cats,$depth,$category,$trails,$allitems,$parents,$subcats) = @_;
+    my $shallower = $depth - 1;
+    if (ref($cats->[$depth]{$category}) eq 'ARRAY') {
+        for (my $k=0; $k<@{$cats->[$depth]{$category}}; $k++) {
+            my $name = $cats->[$depth]{$category}[$k];
+            my $item = &escape($category).':'.&escape($parents->[-1]).':'.$shallower;
+            my $trailstr = join(' -&gt; ',(@{$parents},$category));
+            if ($allitems->{$item} eq '') {
+                push(@{$trails},$trailstr);
+                $allitems->{$item} = scalar(@{$trails})-1;
+            }
+            my $deeper = $depth+1;
+            push(@{$parents},$category);
+            if (ref($subcats) eq 'HASH') {
+                my $subcat = &escape($name).':'.$category.':'.$depth;
+                for (my $j=@{$parents}; $j>=0; $j--) {
+                    my $higher;
+                    if ($j > 0) {
+                        $higher = &escape($parents->[$j]).':'.
+                                  &escape($parents->[$j-1]).':'.$j;
+                    } else {
+                        $higher = &escape($parents->[$j]).'::'.$j;
+                    }
+                    push(@{$subcats->{$higher}},$subcat);
+                }
+            }
+            &recurse_categories($cats,$deeper,$name,$trails,$allitems,$parents,
+                                $subcats);
+            pop(@{$parents});
+        }
+    } else {
+        my $item = &escape($category).':'.&escape($parents->[-1]).':'.$shallower;
+        my $trailstr = join(' -&gt; ',(@{$parents},$category));
+        if ($allitems->{$item} eq '') {
+            push(@{$trails},$trailstr);
+            $allitems->{$item} = scalar(@{$trails})-1;
+        }
+    }
+    return;
+}
+
+=pod
+
+=item *&assign_categories_table()
+
+Create a datatable for display of hierarchical categories in a domain,
+with checkboxes to allow a course to be categorized. 
+
+Inputs:
+
+cathash - reference to hash of categories defined for the domain (from
+          configuration.db)
+
+currcat - scalar with an & separated list of categories assigned to a course. 
+
+Returns: $output (markup to be displayed) 
+
+=cut
+
+sub assign_categories_table {
+    my ($cathash,$currcat) = @_;
+    my $output;
+    if (ref($cathash) eq 'HASH') {
+        my (@cats,@trails,%allitems,%idx,@jsarray,@path,$maxdepth);
+        &extract_categories($cathash,\@cats,\@trails,\%allitems,\%idx,\@jsarray);
+        $maxdepth = scalar(@cats);
+        if (@cats > 0) {
+            my $itemcount = 0;
+            if (ref($cats[0]) eq 'ARRAY') {
+                $output = &Apache::loncommon::start_data_table();
+                my @currcategories;
+                if ($currcat ne '') {
+                    @currcategories = split('&',$currcat);
+                }
+                for (my $i=0; $i<@{$cats[0]}; $i++) {
+                    my $parent = $cats[0][$i];
+                    my $css_class = $itemcount%2?' class="LC_odd_row"':'';
+                    next if ($parent eq 'instcode');
+                    my $item = &escape($parent).'::0';
+                    my $checked = '';
+                    if (@currcategories > 0) {
+                        if (grep(/^\Q$item\E$/,@currcategories)) {
+                            $checked = ' checked="checked" ';
+                        }
+                    }
+                    $output .= '<tr '.$css_class.'><td><span class="LC_nobreak">'.
+                               '<input type="checkbox" name="usecategory" value="'.
+                               $item.'"'.$checked.' />'.$parent.'</span>'.
+                               '<input type="hidden" name="catname" value="'.$parent.'" /></td>';
+                    my $depth = 1;
+                    push(@path,$parent);
+                    $output .= &assign_category_rows($itemcount,\@cats,$depth,$parent,\@path,\@currcategories);
+                    pop(@path);
+                    $output .= '</tr><tr><td colspan="'.$maxdepth.'" class="LC_row_separator"></td></tr>';
+                    $itemcount ++;
+                }
+                $output .= &Apache::loncommon::end_data_table();
+            }
+        }
+    }
+    return $output;
+}
+
+=pod
+
+=item *&assign_category_rows()
+
+Create a datatable row for display of nested categories in a domain,
+with checkboxes to allow a course to be categorized,called recursively.
+
+Inputs:
+
+itemcount - track row number for alternating colors
+
+cats - reference to array of arrays/hashes which encapsulates hierarchy of
+      categories and subcategories.
+
+depth - current depth in hierarchy of categories and sub-categories - 0 indexed.
+
+parent - parent of current category item
+
+path - Array containing all categories back up through the hierarchy from the
+       current category to the top level.
+
+currcategories - reference to array of current categories assigned to the course
+
+Returns: $output (markup to be displayed).
+
+=cut
+
+sub assign_category_rows {
+    my ($itemcount,$cats,$depth,$parent,$path,$currcategories) = @_;
+    my ($text,$name,$item,$chgstr);
+    if (ref($cats) eq 'ARRAY') {
+        my $maxdepth = scalar(@{$cats});
+        if (ref($cats->[$depth]) eq 'HASH') {
+            if (ref($cats->[$depth]{$parent}) eq 'ARRAY') {
+                my $numchildren = @{$cats->[$depth]{$parent}};
+                my $css_class = $itemcount%2?' class="LC_odd_row"':'';
+                $text .= '<td><table class="LC_datatable">';
+                for (my $j=0; $j<$numchildren; $j++) {
+                    $name = $cats->[$depth]{$parent}[$j];
+                    $item = &escape($name).':'.&escape($parent).':'.$depth;
+                    my $deeper = $depth+1;
+                    my $checked = '';
+                    if (ref($currcategories) eq 'ARRAY') {
+                        if (@{$currcategories} > 0) {
+                            if (grep(/^\Q$item\E$/,@{$currcategories})) {
+                                $checked = ' checked="checked" ';
+                            }
+                        }
+                    }
+                    $text .= '<tr><td><span class="LC_nobreak"><label>'.
+                             '<input type="checkbox" name="usecategory" value="'.
+                             $item.'"'.$checked.' />'.$name.'</label></span>'.
+                             '<input type="hidden" name="catname" value="'.$name.'" />'.
+                             '</td><td>';
+                    if (ref($path) eq 'ARRAY') {
+                        push(@{$path},$name);
+                        $text .= &assign_category_rows($itemcount,$cats,$deeper,$name,$path,$currcategories);
+                        pop(@{$path});
+                    }
+                    $text .= '</td></tr>';
+                }
+                $text .= '</table></td>';
+            }
+        }
+    }
+    return $text;
+}
+
+############################################################
+############################################################
+
+
 sub commit_customrole {
-    my ($udom,$uname,$url,$three,$four,$five,$start,$end) = @_;
+    my ($udom,$uname,$url,$three,$four,$five,$start,$end,$context) = @_;
     my $output = &mt('Assigning custom role').' "'.$five.'" by '.$four.':'.$three.' in '.$url.
                          ($start?', '.&mt('starting').' '.localtime($start):'').
                          ($end?', ending '.localtime($end):'').': <b>'.
               &Apache::lonnet::assigncustomrole(
-                 $udom,$uname,$url,$three,$four,$five,$end,$start).
+                 $udom,$uname,$url,$three,$four,$five,$end,$start,undef,undef,$context).
                  '</b><br />';
     return $output;
 }
@@ -7866,7 +8667,7 @@ sub commit_standardrole {
         $output = &mt('Assigning').' '.$three.' in '.$url.
                ($start?', '.&mt('starting').' '.localtime($start):'').
                ($end?', '.&mt('ending').' '.localtime($end):'').': ';
-        my $result = &Apache::lonnet::assignrole($udom,$uname,$url,$three,$end,$start);
+        my $result = &Apache::lonnet::assignrole($udom,$uname,$url,$three,$end,$start,'','',$context);
         if ($context eq 'auto') {
             $output .= $result.$linefeed;
         } else {
@@ -7901,7 +8702,7 @@ sub commit_studentrole {
                 }
                 $oldsecurl = $uurl;
                 $expire_role_result = 
-                    &Apache::lonnet::assignrole($udom,$uname,$uurl,'st',$now);
+                    &Apache::lonnet::assignrole($udom,$uname,$uurl,'st',$now,'','',$context);
                 if ($env{'request.course.sec'} ne '') { 
                     if ($expire_role_result eq 'refused') {
                         my @roles = ('st');
@@ -7924,7 +8725,7 @@ sub commit_studentrole {
             }
         }
         if (($expire_role_result eq 'ok') || ($secchange == 0)) {
-            $modify_section_result = &Apache::lonnet::modify_student_enrollment($udom,$uname,undef,undef,undef,undef,undef,$sec,$end,$start,'','',$cid);
+            $modify_section_result = &Apache::lonnet::modify_student_enrollment($udom,$uname,undef,undef,undef,undef,undef,$sec,$end,$start,'','',$cid,'',$context);
             if ($modify_section_result =~ /^ok/) {
                 if ($secchange == 1) {
                     if ($sec eq '') {
@@ -8087,7 +8888,7 @@ sub construct_course {
 	$outcome .= $clonemsg.$linefeed;
 	my %oldcenv=&Apache::lonnet::dump('environment',$$crsudom,$$crsunum);
 # Copy all files
-	&Apache::lonclonecourse::copycoursefiles($cloneid,$$courseid);
+	&Apache::lonclonecourse::copycoursefiles($cloneid,$$courseid,$args->{'datemode'},$args->{'dateshift'});
 # Restore URL
 	$cenv{'url'}=$oldcenv{'url'};
 # Restore title
@@ -8134,7 +8935,6 @@ sub construct_course {
     } else {
         $cenv{'internal.courseowner'} = $args->{'curruser'};
     }
-
     my @badclasses = (); # Used to accumulate sections/crosslistings that did not pass classlist access check for course owner.
     if ($args->{'crssections'}) {
         $cenv{'internal.sectionnums'} = '';
@@ -8605,9 +9405,11 @@ sub init_user_environment {
 
 sub _add_to_env {
     my ($idf,$env_data,$prefix) = @_;
-    while (my ($key,$value) = each(%$env_data)) {
-	$idf->{$prefix.$key} = $value;
-	$env{$prefix.$key}   = $value;
+    if (ref($env_data) eq 'HASH') {
+        while (my ($key,$value) = each(%$env_data)) {
+	    $idf->{$prefix.$key} = $value;
+	    $env{$prefix.$key}   = $value;
+        }
     }
 }