--- loncom/interface/statistics/lonstudentassessment.pm	2003/09/03 17:45:49	1.65
+++ loncom/interface/statistics/lonstudentassessment.pm	2005/02/25 19:17:44	1.113
@@ -1,6 +1,6 @@
 # The LearningOnline Network with CAPA
 #
-# $Id: lonstudentassessment.pm,v 1.65 2003/09/03 17:45:49 matthew Exp $
+# $Id: lonstudentassessment.pm,v 1.113 2005/02/25 19:17:44 matthew Exp $
 #
 # Copyright Michigan State University Board of Trustees
 #
@@ -52,9 +52,13 @@ package Apache::lonstudentassessment;
 use strict;
 use Apache::lonstatistics;
 use Apache::lonhtmlcommon;
+use Apache::loncommon();
 use Apache::loncoursedata;
 use Apache::lonnet; # for logging porpoises
+use Apache::lonlocal;
+use Time::HiRes;
 use Spreadsheet::WriteExcel;
+use Spreadsheet::WriteExcel::Utility();
 
 #######################################################
 #######################################################
@@ -85,12 +89,6 @@ my $Statistics;
 
 =item $show 'all', 'totals', or 'scores' determines how much data is output
 
-=item $data  determines what performance data is shown
-
-=item $datadescription A short description of the output data selected.
-
-=item $base 'tries' or 'scores' determines the base of the performance shown
-
 =item $single_student_mode evaluates to true if we are showing only one
 student.
 
@@ -100,9 +98,7 @@ student.
 #######################################################
 my $show_links;
 my $output_mode;
-my $data;
-my $base;
-my $datadescription;
+my $chosen_output;
 my $single_student_mode;
 
 #######################################################
@@ -138,11 +134,28 @@ Inputs:
 #######################################################
 sub BuildStudentAssessmentPage {
     my ($r,$c)=@_;
-
+    #
     undef($Statistics);
-
+    undef($show_links);
+    undef($output_mode);
+    undef($chosen_output);
+    undef($single_student_mode);
+    #
+    my %Saveable_Parameters = ('Status' => 'scalar',
+                               'chartoutputmode' => 'scalar',
+                               'chartoutputdata' => 'scalar',
+                               'Section' => 'array',
+                               'StudentData' => 'array',
+                               'Maps' => 'array');
+    &Apache::loncommon::store_course_settings('chart',\%Saveable_Parameters);
+    &Apache::loncommon::restore_course_settings('chart',\%Saveable_Parameters);
+    #
+    &Apache::lonstatistics::PrepareClasslist();
+    #
     $single_student_mode = 0;
     $single_student_mode = 1 if ($ENV{'form.SelectedStudent'});
+    &Apache::loncommon::get_unprocessed_cgi($ENV{'QUERY_STRING'},
+                                            ['selectstudent']);
     if ($ENV{'form.selectstudent'}) {
         &Apache::lonstatistics::DisplayClasslist($r);
         return;
@@ -164,6 +177,7 @@ sub BuildStudentAssessmentPage {
     my $initialize     = \&html_initialize;
     my $output_student = \&html_outputstudent;
     my $finish         = \&html_finish;
+    &Apache::lonnet::logthis('got here! 1');
     #
     if ($output_mode eq 'excel') {
         $initialize     = \&excel_initialize;
@@ -175,6 +189,7 @@ sub BuildStudentAssessmentPage {
         $finish         = \&csv_finish;
     }
     #
+    &Apache::lonnet::logthis('got here! 2');
     if($c->aborted()) {  return ; }
     #
     # Determine which students we want to look at
@@ -194,8 +209,12 @@ sub BuildStudentAssessmentPage {
     #       are immediately reflected in the chart.
     &Apache::lonnet::clear_EXT_cache_status();
     #
+    # Clean out loncoursedata's package data, just to be safe.
+    &Apache::loncoursedata::clear_internal_caches();
+    #
     # Call the initialize routine selected above
     $initialize->($r);
+    &Apache::lonnet::logthis('got here! 3');
     foreach my $student (@Students) {
         if($c->aborted()) { 
             $finish->($r);
@@ -293,17 +312,18 @@ the chart page.
 #######################################################
 sub CreateInterface {
     my $Str = '';
+    $Str .= &Apache::lonhtmlcommon::breadcrumbs(undef,'Chart');
 #    $Str .= &CreateLegend();
     $Str .= '<table cellspacing="5">'."\n";
     $Str .= '<tr>';
-    $Str .= '<td align="center"><b>Sections</b></td>';
-    $Str .= '<td align="center"><b>Student Data</b></td>';
-    $Str .= '<td align="center"><b>Enrollment Status</b></td>';
-    $Str .= '<td align="center"><b>Sequences and Folders</b></td>';
-    $Str .= '<td align="center"><b>Output Format</b>'.
+    $Str .= '<td align="center"><b>'.&mt('Sections').'</b></td>';
+    $Str .= '<td align="center"><b>'.&mt('Student Data</b>').'</td>';
+    $Str .= '<td align="center"><b>'.&mt('Enrollment Status').'</b></td>';
+    $Str .= '<td align="center"><b>'.&mt('Sequences and Folders').'</b></td>';
+    $Str .= '<td align="center"><b>'.&mt('Output Format').'</b>'.
         &Apache::loncommon::help_open_topic("Chart_Output_Formats").
         '</td>';
-    $Str .= '<td align="center"><b>Output Data</b>'.
+    $Str .= '<td align="center"><b>'.&mt('Output Data').'</b>'.
         &Apache::loncommon::help_open_topic("Chart_Output_Data").
         '</td>';
     $Str .= '</tr>'."\n";
@@ -311,34 +331,30 @@ sub CreateInterface {
     $Str .= '<tr><td align="center">'."\n";
     $Str .= &Apache::lonstatistics::SectionSelect('Section','multiple',5);
     $Str .= '</td><td align="center">';
-    my $only_seq_with_assessments = sub { 
-        my $s=shift;
-        if ($s->{'num_assess'} < 1) { 
-            return 0;
-        } else { 
-            return 1;
-        }
-    };
     $Str .= &Apache::lonstatistics::StudentDataSelect('StudentData','multiple',
                                                       5,undef);
     $Str .= '</td><td>'."\n";
     $Str .= &Apache::lonhtmlcommon::StatusOptions(undef,undef,5);
     $Str .= '</td><td>'."\n";
-    $Str .= &Apache::lonstatistics::MapSelect('Maps','multiple,all',5,
-                                              $only_seq_with_assessments);
+    $Str .= &Apache::lonstatistics::map_select('Maps','multiple,all',5);
     $Str .= '</td><td>'."\n";
     $Str .= &CreateAndParseOutputSelector();
     $Str .= '</td><td>'."\n";
     $Str .= &CreateAndParseOutputDataSelector();
     $Str .= '</td></tr>'."\n";
     $Str .= '</table>'."\n";
-    $Str .= '<input type="submit" value="Generate Chart" />';
+    $Str .= '<input type="submit" name="Generate Chart" value="'.
+        &mt('Generate Chart').'" />';
     $Str .= '&nbsp;'x5;
-    $Str .= '<input type="submit" name="selectstudent" '.
-                                  'value="Select One Student" />';
+    $Str .= '<input type="submit" name="selectstudent" value="'.
+        &mt('Select One Student').'" />';
     $Str .= '&nbsp;'x5;
-    $Str .= '<input type="submit" name="ClearCache" value="Clear Caches" />';
+    $Str .= '<input type="submit" name="ClearCache" value="'.
+        &mt('Clear Caches').'" />';
     $Str .= '&nbsp;'x5;
+    $Str .= 
+        &mt('Status[_1]',
+            '<input type="text" name="stats_status" size="60" value="" />');
     $Str .= '<br />';
     return $Str;
 }
@@ -386,7 +402,7 @@ my @OutputOptions =
    },
      { name  => 'CSV',
        value => 'csv',
-       description => 'Output a comma seperated values file suitable for '.
+       description => 'Output a comma separated values file suitable for '.
            'import into a spreadsheet program.  Using this method as opposed '.
            'to Excel output allows you to organize your data before importing'.
            ' it into a spreadsheet program.',
@@ -410,6 +426,8 @@ sub OutputDescriptions {
 sub CreateAndParseOutputSelector {
     my $Str = '';
     my $elementname = 'chartoutputmode';
+    &Apache::loncommon::get_unprocessed_cgi($ENV{'QUERY_STRING'},
+                                            [$elementname]);
     #
     # Format for output options is 'mode, restrictions';
     my $selected = 'html, without links';
@@ -436,7 +454,7 @@ sub CreateAndParseOutputSelector {
     foreach my $option (@OutputOptions) {
         $Str .= "\n".'    <option value="'.$option->{'value'}.'"';
         $Str .= " selected " if ($option->{'value'} eq $selected);
-        $Str .= ">".$option->{'name'}."<\/option>";
+        $Str .= ">".&mt($option->{'name'})."<\/option>";
     }
     $Str .= "\n</select>";
     return $Str;
@@ -447,62 +465,74 @@ sub CreateAndParseOutputSelector {
 ##
 my @OutputDataOptions =
     (
-     { name  => 'Scores',
-       base  => 'scores',
-       value => 'scores',
-       shortdesc => 'Score on each Problem Part',
-       longdesc =>'The students score on each problem part, computed as'.
-           'the part weight * part awarded',
-       },
-     { name  => 'Scores Sum',
-       base  => 'scores',
-       value => 'sum only',
-       shortdesc => 'Sum of Scores on each Problem Part',
-       longdesc =>'The total of the scores of the student on each problem'.
-           ' part in the sequences or folders selected.',
-       },
-     { name  => 'Scores Sum & Maximums',
+     { name  => 'Scores Summary',
        base  => 'scores',
        value => 'sum and total',
+       scores => 1,
+       tries  => 0,
+       every_problem => 0,
+       sequence_sum => 1,
+       sequence_max => 1,
+       grand_total => 1,
+       grand_maximum => 1,
+       summary_table => 1,
+       maximum_row => 1,
        shortdesc => 'Total Score and Maximum Possible for each '.
            'Sequence or Folder',
        longdesc => 'The score of each student as well as the '.
            ' maximum possible on each Sequence or Folder.',
        },
-     { name  => 'Scores Summary Table Only',
+     { name  => 'Scores Per Problem',
        base  => 'scores',
-       value => 'final table scores',
-       shortdesc => 'Summary of Scores',
-       longdesc  => 'The average score on each sequence or folder for the '.
-           'selected students.',
+       value => 'scores',
+       scores => 1,
+       tries  => 0,
+       correct => 0,
+       every_problem => 1,
+       sequence_sum => 1,
+       sequence_max => 1,
+       grand_total => 1,
+       grand_maximum => 1,
+       summary_table => 1,
+       maximum_row => 1,
+       shortdesc => 'Score on each Problem Part',
+       longdesc =>'The students score on each problem part, computed as'.
+           'the part weight * part awarded',
        },
      { name  =>'Tries',
        base  =>'tries',
        value => 'tries',
+       scores => 0,
+       tries  => 1,
+       correct => 0,
+       every_problem => 1,
+       sequence_sum => 0,
+       sequence_max => 0,
+       grand_total => 0,
+       grand_maximum => 0,
+       summary_table => 0,
+       maximum_row => 0,
        shortdesc => 'Number of Tries before success on each Problem Part',
        longdesc =>'The number of tries before success on each problem part.',
+       non_html_notes => 'negative values indicate an incorrect problem',
        },
      { name  =>'Parts Correct',
        base  =>'tries',
-       value => 'parts correct',
-       shortdesc => 'Number of Problem Parts completed successfully.',
-       longdesc => 'The Number of Problem Parts completed successfully'.
-           ' on each sequence or folder.',
-       },
-     { name  =>'Parts Correct & Maximums',
-       base  =>'tries',
        value => 'parts correct total',
+       scores => 0,
+       tries  => 0,
+       correct => 1,
+       every_problem => 1,
+       sequence_sum => 1,
+       sequence_max => 1,
+       grand_total => 1,
+       grand_maximum => 1,
+       summary_table => 1,
+       maximum_row => 0,
        shortdesc => 'Number of Problem Parts completed successfully.',
        longdesc => 'The Number of Problem Parts completed successfully and '.
            'the maximum possible for each student',
        },
-     { name  => 'Parts Summary Table Only',
-       base  => 'tries',
-       value => 'final table parts',
-       shortdesc => 'Summary of Parts Correct',
-       longdesc  => 'A summary table of the average number of problem parts '.
-           'students were able to get correct on each sequence.',
-       },
      );
 
 sub HTMLifyOutputDataDescriptions {
@@ -530,12 +560,10 @@ sub CreateAndParseOutputDataSelector {
         }
     }
     #
-    $data = 'scores';
+    $chosen_output = $OutputDataOptions[0];
     foreach my $option (@OutputDataOptions) {
         if ($option->{'value'} eq $selected) {
-            $data = $option->{'value'};
-            $base = $option->{'base'};
-            $datadescription = $option->{'shortdesc'};
+            $chosen_output = $option;
         }
     }
     #
@@ -543,8 +571,8 @@ sub CreateAndParseOutputDataSelector {
     $Str = qq/<select size="5" name="$elementname">/;
     foreach my $option (@OutputDataOptions) {
         $Str .= "\n".'    <option value="'.$option->{'value'}.'"';
-        $Str .= " selected " if ($option->{'value'} eq $data);
-        $Str .= ">".$option->{'name'}."<\/option>";
+        $Str .= " selected " if ($option->{'value'} eq $chosen_output->{'value'});
+        $Str .= ">".&mt($option->{'name'})."<\/option>";
     }
     $Str .= "\n</select>";
     return $Str;
@@ -578,6 +606,11 @@ Return a line of the chart for a student
 
     my $nodata_count; # The number of students for which there is no data
     my %prog_state;   # progress state used by loncommon PrgWin routines
+    my $total_sum_width;
+
+    my %width; # Holds sequence width information
+    my @sequences;
+    my $navmap; # Have to keep this around since weakref is a bit zealous
 
 sub html_initialize {
     my ($r) = @_;
@@ -585,20 +618,17 @@ sub html_initialize {
     $padding = ' 'x3;
     $count = 0;
     $nodata_count = 0;
+    undef(%prog_state);
+    undef(%width);
+    undef($navmap);
+    undef(@sequences);
+    &Apache::lonnet::logthis('called html_initialize');
     #
     $r->print("<h3>".$ENV{'course.'.$ENV{'request.course.id'}.'.description'}.
               "&nbsp;&nbsp;".localtime(time)."</h3>");
-
-    if ($data !~ /^final table/) {
-        $r->print("<h3>".$datadescription."</h3>");        
-    }
     #
-    # Set up progress window for 'final table' display only
-    if ($data =~ /^final table/) {
-        my $studentcount = scalar(@Apache::lonstatistics::Students); 
-        %prog_state=&Apache::lonhtmlcommon::Create_PrgWin
-            ($r,'Summary Table Status',
-             'Summary Table Compilation Progress', $studentcount);
+    if ($chosen_output->{'base'} !~ /^final table/) {
+        $r->print("<h3>".$chosen_output->{'shortdesc'}."</h3>");        
     }
     my $Str = "<pre>\n";
     # First, the @StudentData fields need to be listed
@@ -609,20 +639,75 @@ sub html_initialize {
         my $width=$Apache::lonstatistics::StudentData{$field}->{'width'};
         $Str .= $title.' 'x($width-$base).$padding;
     }
-    # Now the selected sequences need to be listed
-    foreach my $sequence (&Apache::lonstatistics::Sequences_with_Assess()){
-        my $title = $sequence->{'title'};
-        my $base  = $sequence->{'base_width'};
-        my $width = $sequence->{'width'};
-        $Str .= $title.' 'x($width-$base).$padding;
-    }
-    $Str .= "total</pre>\n";
-    $Str .= "<pre>";
     #
-    # Check for suppression of output
-    if ($data =~ /^final table/) {
-        $Str = '';
+    # Compute the column widths and output the sequence titles
+    my $total_count;
+    ($navmap,@sequences) = 
+        &Apache::lonstatistics::sequences_with_assessments();
+    if (! ref($navmap)) {
+        # Unable to get data, so bail out
+        $r->print("<h3>".
+                  &mt('Unable to retrieve course information.').
+                  '</h3>');
+    }
+    #
+    # Compute sequence widths
+    my $starttime = Time::HiRes::time;
+    foreach my $seq (@sequences) {
+        my $symb = $seq->symb;
+        my $title = $seq->compTitle;
+        $width{$symb}->{'width_sum'} = 0;
+        # Compute width of sum
+        if ($chosen_output->{'sequence_sum'}) {
+            if ($chosen_output->{'every_problem'}) {
+                # Use 1 digit for a space
+                $width{$symb}->{'width_sum'} += 1;            
+            }
+	    $total_count += $width{$symb}->{'num_assess_parts'};
+            # Use 3 digits for the sum
+            $width{$symb}->{'width_sum'} += 3;
+        }
+        # Compute width of maximum
+        if ($chosen_output->{'sequence_max'}) {
+            if ($width{$symb}->{'width_sum'}>0) {
+                # One digit for the '/'
+                $width{$symb}->{'width_sum'} +=1;
+            }
+            # Use 3 digits for the total
+            $width{$symb}->{'width_sum'}+=3;
+        }
+	#
+        if ($chosen_output->{'every_problem'}) {
+            # one problem per digit
+            $width{$symb}->{'width_parts'}=0;
+            $starttime = Time::HiRes::time;
+            my @resources = 
+                $navmap->retrieveResources($seq,sub { shift->is_problem(); },
+                                           0,0,0);
+            $starttime = Time::HiRes::time;
+            foreach my $res (@resources) {
+                my @parts = @{$res->parts};
+                $width{$symb}->{'width_parts'} += scalar(@parts);
+            } 
+            &Apache::lonnet::logthis('2elapsed:'.(Time::HiRes::time-$starttime));            $width{$symb}->{'width_problem'} += 
+                $width{$symb}->{'width_parts'};
+        } else {
+            $width{$symb}->{'width_problem'} = 0;
+        }
+        $width{$symb}->{'width_total'} = $width{$symb}->{'width_problem'} + 
+                                     $width{$symb}->{'width_sum'};
+        if ($width{$symb}->{'width_total'} < length(&HTML::Entities::decode($title))) {
+            $width{$symb}->{'width_total'} = length(&HTML::Entities::decode($title));
+        }
+        #
+        # Output the sequence titles
+        $Str .= $title.(' 'x($width{$symb}->{'width_total'}-
+                            length($title)
+                            )).$padding;
     }
+    $total_sum_width = length($total_count)+1;
+    $Str .= "    total</pre>\n";
+    $Str .= "<pre>";
     $r->print($Str);
     $r->rflush();
     return;
@@ -631,14 +716,19 @@ sub html_initialize {
 sub html_outputstudent {
     my ($r,$student) = @_;
     my $Str = '';
+    return if (! defined($navmap));
     #
-    if($count++ % 5 == 0 && $count > 0 && $data !~ /^final table/) {
+    if($count++ % 5 == 0 && $count > 0) {
         $r->print("</pre><pre>");
     }
     # First, the @StudentData fields need to be listed
     my @to_show = &get_student_fields_to_show();
     foreach my $field (@to_show) {
         my $title=$student->{$field};
+        # Deal with 'comments' - how I love special cases
+        if ($field eq 'comments') {
+            $title = '<a href="/adm/'.$student->{'domain'}.'/'.$student->{'username'}.'/'.'aboutme#coursecomment">'.&mt('Comments').'</a>';
+        }
         my $base = length($title);
         my $width=$Apache::lonstatistics::StudentData{$field}->{'width'};
         $Str .= $title.' 'x($width-$base).$padding;
@@ -653,7 +743,6 @@ sub html_outputstudent {
     }
     if (scalar(@tmp) < 1) {
         $nodata_count++;
-        return if ($data =~ /^final table/);
         $Str .= '<font color="blue">No Course Data</font>'."\n";
         $r->print($Str);
         $r->rflush();
@@ -663,57 +752,69 @@ sub html_outputstudent {
     # By sequence build up the data
     my $studentstats;
     my $PerformanceStr = '';
-    foreach my $seq (&Apache::lonstatistics::Sequences_with_Assess()) {
+    foreach my $seq (@sequences) {
+        &Apache::lonnet::logthis('computing student data for '.$seq->compTitle);
         my ($performance,$performance_length,$score,$seq_max,$rawdata);
-        if ($base eq 'tries') {
+        if ($chosen_output->{'tries'}) {
             ($performance,$performance_length,$score,$seq_max,$rawdata) =
-                &StudentTriesOnSequence($student,\%StudentsData,
-                                        $seq,$show_links);
+                &student_tries_on_sequence($student,\%StudentsData,
+                                           $navmap,$seq,$show_links);
         } else {
             ($performance,$performance_length,$score,$seq_max,$rawdata) =
-                &StudentPerformanceOnSequence($student,\%StudentsData,
-                                              $seq,$show_links);
+                &student_performance_on_sequence($student,\%StudentsData,
+                                                 $navmap,$seq,$show_links);
         }
-        my $ratio = sprintf("%3d",$score).'/'.sprintf("%3d",$seq_max);
-        #
-        if ($data eq 'sum and total' || $data eq 'parts correct total') {
-            $performance  = $ratio;
-            $performance .= ' 'x($seq->{'width'}-length($ratio));
-        } elsif ($data eq 'sum only' || $data eq 'parts correct') {
-            $performance  = $score;
-            $performance .= ' 'x($seq->{'width'}-length($score));
-        } else {
-            # Pad with extra spaces
-            $performance .= ' 'x($seq->{'width'}-$performance_length-
-                                 length($ratio)
-                                 ).$ratio;
+        my $ratio='';
+        if ($chosen_output->{'every_problem'}) {
+            $ratio .= ' ';
+        }
+        if ($chosen_output->{'sequence_sum'} && $score ne ' ') {
+            $ratio .= sprintf("%3.0f",$score);
+        } elsif($chosen_output->{'sequence_sum'}) {
+            $ratio .= ' 'x3;
+        }
+        if ($chosen_output->{'sequence_max'}) {
+            if ($chosen_output->{'sequence_sum'}) {
+                $ratio .= '/';
+            }
+            $ratio .= sprintf("%3.0f",$seq_max);
         }
         #
+        if (! $chosen_output->{'every_problem'}) {
+            $performance = '';
+	    $performance_length=0;
+        }
+        $performance .= ' 'x($width{$seq->symb}->{'width_total'} -
+                             $performance_length -
+                             $width{$seq->symb}->{'width_sum'}).
+            $ratio;
+        #
         $Str .= $performance.$padding;
         #
-        $studentstats->{$seq->{'symb'}}->{'score'}= $score;
-        $studentstats->{$seq->{'symb'}}->{'max'}  = $seq_max;
+        $studentstats->{$seq->symb}->{'score'}= $score;
+        $studentstats->{$seq->symb}->{'max'}  = $seq_max;
     }
     #
     # Total it up and store the statistics info.
-    my ($score,$max) = (0,0);
+    my ($score,$max);
     while (my ($symb,$seq_stats) = each (%{$studentstats})) {
         $Statistics->{$symb}->{'score'} += $seq_stats->{'score'};
         if ($Statistics->{$symb}->{'max'} < $seq_stats->{'max'}) {
             $Statistics->{$symb}->{'max'} = $seq_stats->{'max'};
         }
-        $score += $seq_stats->{'score'};
+        if ($seq_stats->{'score'} ne ' ') {
+            $score += $seq_stats->{'score'};
+            $Statistics->{$symb}->{'num_students'}++;
+        }
         $max   += $seq_stats->{'max'};
     }
-    $Str .= ' '.' 'x(length($max)-length($score)).$score.'/'.$max;
-    $Str .= " \n";
-    #
-    # Check for suppressed output and update the progress window if so...
-    if ($data =~ /^final table/) {
-        $Str = '';
-        &Apache::lonhtmlcommon::Increment_PrgWin($r,\%prog_state,
-                                                 'last student');
+    if (! defined($score)) {
+        $score = ' ' x $total_sum_width;
+    } else {
+        $score = sprintf("%.0f",$score);
     }
+    $Str .= ' '.' 'x($total_sum_width-length($score)).$score.' / '.$max;
+    $Str .= " \n";
     #
     $r->print($Str);
     #
@@ -723,79 +824,79 @@ sub html_outputstudent {
 
 sub html_finish {
     my ($r) = @_;
+    return if (! defined($navmap));
     #
     # Check for suppressed output and close the progress window if so
-    if ($data =~ /^final table/) {
-        &Apache::lonhtmlcommon::Close_PrgWin($r,\%prog_state);
-    } else {
-        $r->print("</pre>\n"); 
-    }
-    if ($single_student_mode) {
-        $r->print(&SingleStudentTotal());
-    } else {
-        $r->print(&StudentAverageTotal());
+    $r->print("</pre>\n"); 
+    if ($chosen_output->{'summary_table'}) {
+        if ($single_student_mode) {
+            $r->print(&SingleStudentTotal());
+        } else {
+            $r->print(&StudentAverageTotal());
+        }
     }
     $r->rflush();
+    undef($navmap);
     return;
 }
 
 sub StudentAverageTotal {
-    my $Str = "<h3>Summary Tables</h3>\n";
-    my $num_students = scalar(@Apache::lonstatistics::Students);
-    my $total_ave = 0;
-    my $total_max = 0;
+    my $Str = '<h3>'.&mt('Summary Tables').'</h3>'.$/;
     $Str .= '<table border=2 cellspacing="1">'."\n";
-    $Str .= "<tr><th>Title</th><th>Average</th><th>Maximum</th></tr>\n";
-    foreach my $seq (&Apache::lonstatistics::Sequences_with_Assess()) {
+    $Str .= '<tr>'.
+        '<th>'.&mt('Title').'</th>'.
+        '<th>'.&mt('Average').'</th>'.
+        '<th>'.&mt('Maximum').'</th>'.
+        '</tr>'.$/;
+    foreach my $seq (@sequences) {
+        my $symb = $seq->symb;
         my $ave;
-        if ($num_students > $nodata_count) {
-            $ave = int(100*($Statistics->{$seq->{'symb'}}->{'score'}/
-                            ($num_students-$nodata_count)))/100;
+        my $num_students = $Statistics->{$symb}->{'num_students'};
+        if ($num_students > 0) {
+            $ave = int(100*
+                       ($Statistics->{$symb}->{'score'}/$num_students)
+                       )/100;
         } else {
             $ave = 0;
         }
-        $total_ave += $ave;
-        my $max = $Statistics->{$seq->{'symb'}}->{'max'};
-        $total_max += $max;
-        if ($ave == 0) {
-            $ave = "0.00";
-        }
-        $ave .= '&nbsp;';
-        $max .= '&nbsp;&nbsp;&nbsp;';
-        $Str .= '<tr><td>'.$seq->{'title'}.'</td>'.
-            '<td align="right">'.$ave.'</td>'.
-                '<td align="right">'.$max.'</td></tr>'."\n";
+        my $max = $Statistics->{$symb}->{'max'};
+        $ave = sprintf("%.2f",$ave);
+        $Str .= '<tr><td>'.$seq->compTitle.'</td>'.
+            '<td align="right">'.$ave.'&nbsp;</td>'.
+            '<td align="right">'.$max.'&nbsp;'.'</td></tr>'."\n";
     }
-    $total_ave = int(100*$total_ave)/100; # only two digit
-    $Str .= "</table>\n";
-    $Str .= '<table border=2 cellspacing="1">'."\n";
-    $Str .= '<tr><th>Number of Students</th><th>Average</th>'.
-        "<th>Maximum</th></tr>\n";
-    $Str .= '<tr><td>'.($num_students-$nodata_count).'</td>'.
-        '<td>'.$total_ave.'</td><td>'.$total_max.'</td>';
     $Str .= "</table>\n";
     return $Str;
 }
 
 sub SingleStudentTotal {
     my $student = &Apache::lonstatistics::current_student();
-    my $Str = "<h3>Summary table for ".$student->{'fullname'}." ".
-        $student->{'username'}.'@'.$student->{'domain'}."</h3>\n";
+    my $Str = '<h3>'.&mt('Summary table for [_1] ([_2]@[_3])',
+                         $student->{'fullname'},
+                         $student->{'username'},$student->{'domain'}).'</h3>';
+    $Str .= $/;
     $Str .= '<table border=2 cellspacing="1">'."\n";
     $Str .= 
-        "<tr><th>Sequence or Folder</th><th>Score</th><th>Maximum</th></tr>\n";
+        '<tr>'.
+        '<th>'.&mt('Sequence or Folder').'</th>';
+    if ($chosen_output->{'base'} eq 'tries') {
+        $Str .= '<th>'.&mt('Parts Correct').'</th>';
+    } else {
+        $Str .= '<th>'.&mt('Score').'</th>';
+    }
+    $Str .= '<th>'.&mt('Maximum').'</th>'."</tr>\n";
     my $total = 0;
     my $total_max = 0;
     foreach my $seq (&Apache::lonstatistics::Sequences_with_Assess()) {
-        my $value = $Statistics->{$seq->{'symb'}}->{'score'};
-        my $max = $Statistics->{$seq->{'symb'}}->{'max'};
-        $Str .= '<tr><td>'.$seq->{'title'}.'</td>'.
+        my $value = $Statistics->{$seq->symb}->{'score'};
+        my $max = $Statistics->{$seq->symb}->{'max'};
+        $Str .= '<tr><td>'.&HTML::Entities::encode($seq->compTitle).'</td>'.
             '<td align="right">'.$value.'</td>'.
                 '<td align="right">'.$max.'</td></tr>'."\n";
         $total += $value;
         $total_max +=$max;
     }
-    $Str .= '<tr><td><b>Total</b></td>'.
+    $Str .= '<tr><td><b>'.&mt('Total').'</b></td>'.
         '<td align="right">'.$total.'</td>'.
         '<td align="right">'.$total_max."</td></tr>\n";
     $Str .= "</table>\n";
@@ -833,57 +934,44 @@ my $cols_output;
 my %prog_state; # progress window state
 my $request_aborted;
 
+my $total_formula;
+my $maximum_formula;
+
 sub excel_initialize {
     my ($r) = @_;
     #
-    $request_aborted = undef;
+    undef ($excel_sheet);
+    undef ($excel_workbook);
+    undef ($filename);
+    undef ($rows_output);
+    undef ($cols_output);
+    undef (%prog_state);
+    undef ($request_aborted);
+    undef ($total_formula);
+    undef ($maximum_formula);
+    #
     my $total_columns = scalar(&get_student_fields_to_show());
+    my $num_students = scalar(@Apache::lonstatistics::Students);
+    #
     foreach my $seq (&Apache::lonstatistics::Sequences_with_Assess()) {
-        # Add 2 because we need a 'sum' and 'total' column for each
-        $total_columns += $seq->{'num_assess_parts'}+2;
-    }
-    if ($data eq 'tries' && $total_columns > 255) {
-        $r->print(<<END);
-<h2>Unable to Complete Request</h2>
-<p>
-LON-CAPA is unable to produce your Excel spreadsheet because your selections
-will result in more than 255 columns.  Excel allows only 255 columns in a
-spreadsheet.
-</p><p>
-You may consider reducing the number of <b>Sequences or Folders</b> you
-have selected.  
-</p><p>
-LON-CAPA can produce <b>CSV</b> files of this data or Excel files of the
-summary data (<b>Parts Correct</b> or <b>Parts Correct & Totals</b>).
-</p>
-END
-       $request_aborted = 1;
-    }
-    if ($data eq 'scores' && $total_columns > 255) {
-        $r->print(<<END);
-<h2>Unable to Complete Request</h2>
-<p>
-LON-CAPA is unable to produce your Excel spreadsheet because your selections
-will result in more than 255 columns.  Excel allows only 255 columns in a
-spreadsheet.
-</p><p>
-You may consider reducing the number of <b>Sequences or Folders</b> you
-have selected.  
-</p><p>
-LON-CAPA can produce <b>CSV</b> files of this data or Excel files of the
-summary data (<b>Scores Sum</b> or <b>Scores Sum & Totals</b>).
-</p>
-END
-       $request_aborted = 1;
+        if ($chosen_output->{'every_problem'}) {
+            $total_columns += $seq->{'num_assess_parts'};
+        }
+        # Add 2 because we need a 'sequence_sum' and 'total' column for each
+        $total_columns += 2;
     }
-    if ($data =~ /^final table/) {
-        $r->print(<<END);
-<h2>Unable to Complete Request</h2>
-<p>
-The <b>Summary Table (Scores)</b> option is not available for non-HTML output.
-</p>
-END
-       $request_aborted = 1;
+    my $too_many_cols_error_message = 
+        '<h2>'.&mt('Unable to Complete Request').'</h2>'.$/.
+        '<p>'.&mt('LON-CAPA is unable to produce your Excel spreadsheet because your selections will result in more than 255 columns.  Excel allows only 255 columns in a spreadsheet.').'</p>'.$/.
+        '<p>'.&mt('You may consider reducing the number of <b>Sequences or Folders</b> you have selected.').'</p>'.$/.
+        '<p>'.&mt('LON-CAPA can produce <b>CSV</b> files of this data or Excel files of the <b>Scores Summary</b> data.').'</p>'.$/;
+    if ($chosen_output->{'base'} eq 'tries' && $total_columns > 255) {
+        $r->print($too_many_cols_error_message);
+        $request_aborted = 1;
+    }
+    if ($chosen_output->{'base'} eq 'scores' && $total_columns > 255) {
+        $r->print($too_many_cols_error_message);
+        $request_aborted = 1;
     }
     return if ($request_aborted);
     #
@@ -897,6 +985,25 @@ END
     $rows_output = 0;
     $cols_output = 0;
     #
+    # Determine rows 
+    my $header_row = $rows_output++;
+    my $description_row = $rows_output++;
+    my $notes_row = $rows_output++;
+    $rows_output++;        # blank row
+    my $summary_header_row;
+    if ($chosen_output->{'summary_table'}) {
+        $summary_header_row = $rows_output++;
+        $rows_output+= scalar(&Apache::lonstatistics::Sequences_with_Assess());
+        $rows_output++;
+    }
+    my $sequence_name_row = $rows_output++;
+    my $resource_name_row = $rows_output++;
+    my $maximum_data_row = $rows_output++;
+    if (! $chosen_output->{'maximum_row'}) {
+        $rows_output--;
+    }
+    my $first_data_row = $rows_output++;
+    #
     # Create sheet
     $excel_workbook = Spreadsheet::WriteExcel->new('/home/httpd'.$filename);
     #
@@ -915,16 +1022,17 @@ END
     # File::Temp is used to determine the temporary directory.
     $excel_workbook->set_tempdir($Apache::lonnet::tmpdir);
     #
+    my $format = &Apache::loncommon::define_excel_formats($excel_workbook);
+    #
     # Add a worksheet
     my $sheetname = $ENV{'course.'.$ENV{'request.course.id'}.'.description'};
-    if (length($sheetname) > 31) {
-        $sheetname = substr($sheetname,0,31);
-    }
+    $sheetname = &Apache::loncommon::clean_excel_name($sheetname);
     $excel_sheet = $excel_workbook->addworksheet($sheetname);
     #
     # Put the course description in the header
-    $excel_sheet->write($rows_output,$cols_output++,
-                   $ENV{'course.'.$ENV{'request.course.id'}.'.description'});
+    $excel_sheet->write($header_row,$cols_output++,
+                   $ENV{'course.'.$ENV{'request.course.id'}.'.description'},
+                        $format->{'h1'});
     $cols_output += 3;
     #
     # Put a description of the sections listed
@@ -944,121 +1052,290 @@ END
             $sectionstring = "Section ".$Sections[0];
         }
     }
-    $excel_sheet->write($rows_output,$cols_output++,$sectionstring);
+    $excel_sheet->write($header_row,$cols_output++,$sectionstring,
+                        $format->{'h3'});
     $cols_output += scalar(@Sections);
     #
     # Put the date in there too
-    $excel_sheet->write($rows_output++,$cols_output++,
-                        'Compiled on '.localtime(time));
+    $excel_sheet->write($header_row,$cols_output++,
+                        'Compiled on '.localtime(time),$format->{'h3'});
     #
     $cols_output = 0;
-    $excel_sheet->write($rows_output++,$cols_output++,$datadescription);
+    $excel_sheet->write($description_row,$cols_output++,
+                        $chosen_output->{'shortdesc'},
+                        $format->{'b'});
     #
-    if ($data eq 'tries' || $data eq 'scores') {
-        $rows_output++;
-    }
+    $cols_output = 0;
+    $excel_sheet->write($notes_row,$cols_output++,
+                        $chosen_output->{'non_html_notes'},
+                        $format->{'i'});
+    
+    ##############################################
+    # Output headings for the raw data
+    ##############################################
     #
     # Add the student headers
     $cols_output = 0;
     foreach my $field (&get_student_fields_to_show()) {
-        $excel_sheet->write($rows_output,$cols_output++,$field);
-    }
-    my $row_offset = 0;
-    if ($data eq 'tries' || $data eq 'scores') {
-        $row_offset = -1;
+        $excel_sheet->write($resource_name_row,$cols_output++,$field,
+                            $format->{'bold'});
     }
     #
     # Add the remaining column headers
+    my $total_formula_string = '=0';
+    my $maximum_formula_string = '=0';
     foreach my $seq (&Apache::lonstatistics::Sequences_with_Assess()) {
-        $excel_sheet->write($rows_output+$row_offset,
-                            $cols_output,$seq->{'title'});
-        if ($data eq 'tries' || $data eq 'scores') {
+        $excel_sheet->write($sequence_name_row,,
+                            $cols_output,$seq->{'title'},$format->{'bold'});
+        # Determine starting cell
+        $seq->{'Excel:startcell'}=
+            &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+            ($first_data_row,$cols_output);
+        $seq->{'Excel:startcol'}=$cols_output;
+        my $count = 0;
+        if ($chosen_output->{'every_problem'}) {
+            # Put the names of the problems and parts into the sheet
             foreach my $res (@{$seq->{'contents'}}) {
-                next if ($res->{'type'} ne 'assessment');
+                if ($res->{'type'} ne 'assessment'  || 
+                    ! exists($res->{'parts'})       ||
+                    ref($res->{'parts'}) ne 'ARRAY' ||
+                    scalar(@{$res->{'parts'}}) < 1) {
+                    next;
+                }
                 if (scalar(@{$res->{'parts'}}) > 1) {
                     foreach my $part (@{$res->{'parts'}}) {
-                        $excel_sheet->write($rows_output,
+                        $excel_sheet->write($resource_name_row,
                                             $cols_output++,
-                                            $res->{'title'}.' part '.$part);
+                                            $res->{'title'}.' part '.$part,
+                                            $format->{'bold'});
+                        $count++;
                     }
                 } else {
-                    $excel_sheet->write($rows_output,
+                    $excel_sheet->write($resource_name_row,
                                         $cols_output++,
-                                        $res->{'title'});
+                                        $res->{'title'},$format->{'bold'});
+                    $count++;
                 }
             }
-            $excel_sheet->write($rows_output,$cols_output++,'score');
-            $excel_sheet->write($rows_output,$cols_output++,'maximum');
-        } elsif ($data eq 'sum and total' || $data eq 'parts correct total') {
-            $excel_sheet->write($rows_output+1,$cols_output,'score');
-            $excel_sheet->write($rows_output+1,$cols_output+1,'maximum');
-            $cols_output += 2;
+        }
+        # Determine ending cell
+        if ($count <= 1) {
+            $seq->{'Excel:endcell'} = $seq->{'Excel:startcell'};
+            $seq->{'Excel:endcol'}  = $seq->{'Excel:startcol'};
         } else {
+            $seq->{'Excel:endcell'} = 
+                &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+                ($first_data_row,$cols_output-1);
+            $seq->{'Excel:endcol'} = $cols_output-1;
+        }
+        # Create the formula for summing up this sequence
+        if (! exists($seq->{'Excel:endcell'}) ||
+            ! defined($seq->{'Excel:endcell'})) {
+            $seq->{'Excel:endcell'} = $seq->{'Excel:startcell'};
+        }
+        $seq->{'Excel:sum'}= $excel_sheet->store_formula
+            ('=SUM('.$seq->{'Excel:startcell'}.
+             ':'.$seq->{'Excel:endcell'}.')');
+        # Determine cell the score is held in
+        $seq->{'Excel:scorecell'} = 
+            &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+            ($first_data_row,$cols_output);
+        $seq->{'Excel:scorecol'}=$cols_output;
+        if ($chosen_output->{'base'} eq 'parts correct total') {
+            $excel_sheet->write($resource_name_row,$cols_output++,
+                                'parts correct',
+                                $format->{'bold'});
+        } elsif ($chosen_output->{'sequence_sum'}) {
+            if ($chosen_output->{'correct'}) {
+                # Only reporting the number correct, so do not call it score
+                $excel_sheet->write($resource_name_row,$cols_output++,
+                                    'sum',
+                                    $format->{'bold'});
+            } else {
+                $excel_sheet->write($resource_name_row,$cols_output++,
+                                    'score',
+                                    $format->{'bold'});
+            }
+        }
+        #
+        $total_formula_string.='+'.
+            &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+            ($first_data_row,$cols_output-1);
+        if ($chosen_output->{'sequence_max'}) {
+            $excel_sheet->write($resource_name_row,$cols_output,
+                                'maximum',
+                                $format->{'bold'});
+            $seq->{'Excel:maxcell'} = 
+                &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+                ($first_data_row,$cols_output);
+            $seq->{'Excel:maxcol'}=$cols_output;
+            $maximum_formula_string.='+'.
+                &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+                ($first_data_row,$cols_output);
             $cols_output++;
+
         }
     }
-    #
-    # Bookkeeping
-    if ($data eq 'sum and total' || $data eq 'parts correct total') {
-        $rows_output += 2;
-    } else {
-        $rows_output += 1;
-    }
-    #
-    # Output a row for MAX
-    $cols_output = 0;
-    foreach my $field (&get_student_fields_to_show()) {
-        if ($field eq 'username' || $field eq 'fullname' || 
-            $field eq 'id') {
-            $excel_sheet->write($rows_output,$cols_output++,'Maximum');
-        } else {
-            $excel_sheet->write($rows_output,$cols_output++,'');
+    if ($chosen_output->{'grand_total'}) {
+        $excel_sheet->write($resource_name_row,$cols_output++,'Total',
+                            $format->{'bold'});
+    }
+    if ($chosen_output->{'grand_maximum'}) {
+        $excel_sheet->write($resource_name_row,$cols_output++,'Max. Total',
+                            $format->{'bold'});
+    }
+    $total_formula = $excel_sheet->store_formula($total_formula_string);
+    $maximum_formula = $excel_sheet->store_formula($maximum_formula_string);
+    ##############################################
+    # Output a row for MAX, if appropriate
+    ##############################################
+    if ($chosen_output->{'maximum_row'}) {
+        $cols_output = 0;
+        foreach my $field (&get_student_fields_to_show()) {
+            if ($field eq 'username' || $field eq 'fullname' || 
+                $field eq 'id') {
+                $excel_sheet->write($maximum_data_row,$cols_output++,'Maximum',
+                                    $format->{'bold'});
+            } else {
+                $excel_sheet->write($maximum_data_row,$cols_output++,'');
+            }
         }
-    }
-    #
-    # Add the maximums for each sequence or assessment
-    foreach my $seq (&Apache::lonstatistics::Sequences_with_Assess()) {
-        my $weight;
-        my $max = 0;
-        foreach my $resource (@{$seq->{'contents'}}) {
-            next if ($resource->{'type'} ne 'assessment');
-            foreach my $part (@{$resource->{'parts'}}) {
-                $weight = 1;
-                if ($base eq 'scores') {
-                    $weight = &Apache::lonnet::EXT
-                        ('resource.'.$part.'.weight',$resource->{'symb'},
-                         undef,undef,undef);
-                    if (!defined($weight) || ($weight eq '')) { 
-                        $weight=1;
+        #
+        # Add the maximums for each sequence or assessment
+        my %total_cell_translation;
+        my %maximum_cell_translation;
+        foreach my $seq (&Apache::lonstatistics::Sequences_with_Assess()) {
+            $cols_output=$seq->{'Excel:startcol'};
+            $total_cell_translation{$seq->{'Excel:scorecell'}} = 
+                &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+                ($maximum_data_row,$seq->{'Excel:scorecol'});
+            $maximum_cell_translation{$seq->{'Excel:maxcell'}} = 
+                &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+                ($maximum_data_row,$seq->{'Excel:maxcol'});
+            my $weight;
+            my $max = 0;
+            foreach my $resource (@{$seq->{'contents'}}) {
+                next if ($resource->{'type'} ne 'assessment');
+                foreach my $part (@{$resource->{'parts'}}) {
+                    $weight = 1;
+                    if ($chosen_output->{'scores'}) {
+                        $weight = &Apache::lonnet::EXT
+                            ('resource.'.$part.'.weight',$resource->{'symb'},
+                             undef,undef,undef);
+                        if (!defined($weight) || ($weight eq '')) { 
+                            $weight=1;
+                        }
                     }
+                    if ($chosen_output->{'scores'} &&
+                        $chosen_output->{'every_problem'}) {
+                        $excel_sheet->write($maximum_data_row,$cols_output++,
+                                            $weight);
+                    }
+                    $max += $weight;
                 }
-                if ($data eq 'scores') {
-                    $excel_sheet->write($rows_output,$cols_output++,$weight);
-                } elsif ($data eq 'tries') {
-                    $excel_sheet->write($rows_output,$cols_output++,'');
-                }
-                $max += $weight;
+            } 
+            #
+            if ($chosen_output->{'sequence_sum'} && 
+                $chosen_output->{'every_problem'}) {
+		my %replaceCells=
+		    ('^'.$seq->{'Excel:startcell'}.':'.
+		         $seq->{'Excel:endcell'}.'$' =>
+		     &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell($maximum_data_row,$seq->{'Excel:startcol'}).':'.
+		     &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell($maximum_data_row,$seq->{'Excel:endcol'}));
+                $excel_sheet->repeat_formula($maximum_data_row,$cols_output++,
+                                             $seq->{'Excel:sum'},undef,
+					     %replaceCells);
+			
+            } elsif ($chosen_output->{'sequence_sum'}) {
+                $excel_sheet->write($maximum_data_row,$cols_output++,$max);
             }
-        } 
-        if (! ($data eq 'sum only' || $data eq 'parts correct')) {
-            $excel_sheet->write($rows_output,$cols_output++,'');
+            if ($chosen_output->{'sequence_max'}) {
+                $excel_sheet->write($maximum_data_row,$cols_output++,$max);
+            }
+            #
         }
-        $excel_sheet->write($rows_output,$cols_output++,$max);
-    }
-    $rows_output++;
+        if ($chosen_output->{'grand_total'}) {
+            $excel_sheet->repeat_formula($maximum_data_row,$cols_output++,
+                                         $total_formula,undef,
+                                         %total_cell_translation);
+        }
+        if ($chosen_output->{'grand_maximum'}) {
+            $excel_sheet->repeat_formula($maximum_data_row,$cols_output++,
+                                         $maximum_formula,undef,
+                                         %maximum_cell_translation);
+        }
+    } # End of MAXIMUM row output  if ($chosen_output->{'maximum_row'}) {
+    $rows_output = $first_data_row;
+    ##############################################
+    # Output summary table, which actually is above the sequence name row.
+    ##############################################
+    if ($chosen_output->{'summary_table'}) {
+        $cols_output = 0;
+        $excel_sheet->write($summary_header_row,$cols_output++,
+                            'Summary Table',$format->{'bold'});
+        if ($chosen_output->{'maximum_row'}) {
+            $excel_sheet->write($summary_header_row,$cols_output++,
+                                'Maximum',$format->{'bold'});
+        }
+        $excel_sheet->write($summary_header_row,$cols_output++,
+                            'Average',$format->{'bold'});
+        $excel_sheet->write($summary_header_row,$cols_output++,
+                            'Median',$format->{'bold'});
+        $excel_sheet->write($summary_header_row,$cols_output++,
+                            'Std Dev',$format->{'bold'});
+        my $row = $summary_header_row+1;
+        foreach my $seq (&Apache::lonstatistics::Sequences_with_Assess()) {
+            $cols_output = 0;
+            $excel_sheet->write($row,$cols_output++,
+                                $seq->{'title'},
+                                $format->{'bold'});
+            if ($chosen_output->{'maximum_row'}) {
+                $excel_sheet->write
+                    ($row,$cols_output++,
+                     '='.
+                     &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+                     ($maximum_data_row,$seq->{'Excel:scorecol'})
+                     );
+            }
+            my $range = 
+                &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+                ($first_data_row,$seq->{'Excel:scorecol'}).
+                ':'.
+                &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+                ($first_data_row+$num_students-1,$seq->{'Excel:scorecol'});
+            $excel_sheet->write($row,$cols_output++,
+                                '=AVERAGE('.$range.')');
+            $excel_sheet->write($row,$cols_output++,
+                                '=MEDIAN('.$range.')');
+            $excel_sheet->write($row,$cols_output++,
+                                '=STDEV('.$range.')');
+            $row++;
+        }
+    }
+    ##############################################
+    #   Take care of non-excel initialization
+    ##############################################
     #
     # Let the user know what we are doing
     my $studentcount = scalar(@Apache::lonstatistics::Students); 
-    $r->print("<h1>Compiling Excel spreadsheet for ".
-              $studentcount.' student');
-    $r->print('s') if ($studentcount > 1);
-    $r->print("</h1>\n");
+    if ($ENV{'form.SelectedStudent'}) {
+        $studentcount = '1';
+    }
+    if ($studentcount > 1) {
+        $r->print('<h1>'.&mt('Compiling Excel spreadsheet for [_1] students',
+                             $studentcount)."</h1>\n");
+    } else {
+        $r->print('<h1>'.
+                  &mt('Compiling Excel spreadsheet for 1 student').
+                  "</h1>\n");
+    }
     $r->rflush();
     #
     # Initialize progress window
     %prog_state=&Apache::lonhtmlcommon::Create_PrgWin
         ($r,'Excel File Compilation Status',
-         'Excel File Compilation Progress', $studentcount);
+         'Excel File Compilation Progress', $studentcount,
+         'inline',undef,'Statistics','stats_status');
     #
     &Apache::lonhtmlcommon::Update_PrgWin($r,\%prog_state,
                                           'Processing first student');
@@ -1074,7 +1351,12 @@ sub excel_outputstudent {
     # Write out student data
     my @to_show = &get_student_fields_to_show();
     foreach my $field (@to_show) {
-        $excel_sheet->write($rows_output,$cols_output++,$student->{$field});
+        my $value = $student->{$field};
+        if ($field eq 'comments') {
+            $value = &Apache::lonmsg::retrieve_instructor_comments
+                ($student->{'username'},$student->{'domain'});
+        }
+        $excel_sheet->write($rows_output,$cols_output++,$value);
     }
     #
     # Get student assessment data
@@ -1088,9 +1370,21 @@ sub excel_outputstudent {
     }
     #
     # Write out sequence scores and totals data
+    my %total_cell_translation;
+    my %maximum_cell_translation;
     foreach my $seq (&Apache::lonstatistics::Sequences_with_Assess()) {
+        $cols_output = $seq->{'Excel:startcol'};
+        # Keep track of cells to translate in total cell
+        $total_cell_translation{$seq->{'Excel:scorecell'}} = 
+            &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+                        ($rows_output,$seq->{'Excel:scorecol'});
+        # and maximum cell
+        $maximum_cell_translation{$seq->{'Excel:maxcell'}} = 
+            &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell
+            ($rows_output,$seq->{'Excel:maxcol'});
+        #
         my ($performance,$performance_length,$score,$seq_max,$rawdata);
-        if ($base eq 'tries') {
+        if ($chosen_output->{'tries'} || $chosen_output->{'correct'}){
             ($performance,$performance_length,$score,$seq_max,$rawdata) =
                 &StudentTriesOnSequence($student,\%StudentsData,
                                         $seq,'no');
@@ -1098,22 +1392,62 @@ sub excel_outputstudent {
             ($performance,$performance_length,$score,$seq_max,$rawdata) =
                 &StudentPerformanceOnSequence($student,\%StudentsData,
                                               $seq,'no');
+        } 
+        if ($chosen_output->{'every_problem'}) {
+            if ($chosen_output->{'correct'}) {
+                # only indiciate if each item is correct or not
+                foreach my $value (@$rawdata) {
+                    # nonzero means correct
+                    $value = 1 if ($value > 0);
+                    $excel_sheet->write($rows_output,$cols_output++,$value);
+                }
+            } else {
+                foreach my $value (@$rawdata) {
+                    if ($score eq ' ' || !defined($value)) {
+                        $cols_output++;
+                    } else {                        
+                        $excel_sheet->write($rows_output,$cols_output++,
+                                            $value);
+                    }
+                }
+            }
         }
-        if ($data eq 'tries' || $data eq 'scores') {
-            foreach my $value (@$rawdata) {
-                $excel_sheet->write($rows_output,$cols_output++,$value);
+        if ($chosen_output->{'sequence_sum'} && 
+            $chosen_output->{'every_problem'}) {
+            # Write a formula for the sum of this sequence
+            my %replaceCells=
+		('^'.$seq->{'Excel:startcell'}.':'.$seq->{'Excel:endcell'}.'$'
+		 => 
+		 &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell($rows_output,$seq->{'Excel:startcol'}).':'.
+		 &Spreadsheet::WriteExcel::Utility::xl_rowcol_to_cell($rows_output,$seq->{'Excel:endcol'})
+		 );
+            # The undef is for the format	    
+	    $excel_sheet->repeat_formula($rows_output,$cols_output++,
+					 $seq->{'Excel:sum'},undef,
+					 %replaceCells);
+        } elsif ($chosen_output->{'sequence_sum'}) {
+            if ($score eq ' ') {
+                $cols_output++;
+            } else {
+                $excel_sheet->write($rows_output,$cols_output++,$score);
             }
-            $excel_sheet->write($rows_output,$cols_output++,$score);
-            $excel_sheet->write($rows_output,$cols_output++,$seq_max);
-        } elsif ($data eq 'sum and total' || $data eq 'sum only' || 
-            $data eq 'parts correct' || $data eq 'parts correct total') {
-            $excel_sheet->write($rows_output,$cols_output++,$score);
         }
-        if ($data eq 'sum and total' || $data eq 'parts correct total') {
+        if ($chosen_output->{'sequence_max'}) {
             $excel_sheet->write($rows_output,$cols_output++,$seq_max);
         }
     }
     #
+    if ($chosen_output->{'grand_total'}) {
+        $excel_sheet->repeat_formula($rows_output,$cols_output++,
+                                     $total_formula,undef,
+                                     %total_cell_translation);
+    }
+    if ($chosen_output->{'grand_maximum'}) {
+        $excel_sheet->repeat_formula($rows_output,$cols_output++,
+                                     $maximum_formula,undef,
+                                     %maximum_cell_translation);
+    }
+    #
     # Bookkeeping
     $rows_output++; 
     $cols_output=0;
@@ -1173,13 +1507,14 @@ sub csv_initialize{
     my ($r) = @_;
     # 
     # Clean up
-    $filename = undef;
-    $outputfile = undef;
+    undef($outputfile);
+    undef($filename);
+    undef($request_aborted);
     undef(%prog_state);
     #
     # Deal with unimplemented requests
     $request_aborted = undef;
-    if ($data =~ /final table/) {
+    if ($chosen_output->{'base'} =~ /final table/) {
         $r->print(<<END);
 <h2>Unable to Complete Request</h2>
 <p>
@@ -1189,7 +1524,13 @@ END
        $request_aborted = 1;
     }
     return if ($request_aborted);
-
+    #
+    # Initialize progress window
+    my $studentcount = scalar(@Apache::lonstatistics::Students);
+    %prog_state=&Apache::lonhtmlcommon::Create_PrgWin
+        ($r,'CSV File Compilation Status',
+         'CSV File Compilation Progress', $studentcount,
+         'inline',undef,'Statistics','stats_status');
     #
     # Open a file
     $filename = '/prtspool/'.
@@ -1208,57 +1549,66 @@ END
     print $outputfile '"'.&Apache::loncommon::csv_translate($description).'",'.
         '"'.&Apache::loncommon::csv_translate(scalar(localtime(time))).'"'.
             "\n";
+    foreach my $item ('shortdesc','non_html_notes') {
+        next if (! exists($chosen_output->{$item}));
+        print $outputfile 
+            '"'.&Apache::loncommon::csv_translate($chosen_output->{$item}).'"'.
+            "\n";
+    }
     #
     # Print out the headings
-    my $Str = '';
-    my $Str2 = undef;
+    my $sequence_row = '';
+    my $resource_row = undef;
     foreach my $field (&get_student_fields_to_show()) {
-        if ($data eq 'sum only') {
-            $Str .= '"'.&Apache::loncommon::csv_translate($field).'",';
-        } elsif ($data eq 'sum and total' || $data eq 'parts correct total') {
-            $Str .= '"",'; # first row empty on the student fields
-            $Str2 .= '"'.&Apache::loncommon::csv_translate($field).'",';
-        } elsif ($data eq 'scores' || $data eq 'tries' || 
-                 $data eq 'parts correct') {
-            $Str  .= '"",';
-            $Str2 .= '"'.&Apache::loncommon::csv_translate($field).'",';
-        }
+        $sequence_row .='"",';
+        $resource_row .= '"'.&Apache::loncommon::csv_translate($field).'",';
     }
     foreach my $seq (&Apache::lonstatistics::Sequences_with_Assess()) {
-        if ($data eq 'sum only' || $data eq 'parts correct') {
-            $Str .= '"'.&Apache::loncommon::csv_translate($seq->{'title'}).
-                '",';
-        } elsif ($data eq 'sum and total' || $data eq 'parts correct total') {
-            $Str  .= '"'.&Apache::loncommon::csv_translate($seq->{'title'}).
-                '","",';
-            $Str2 .= '"score","total possible",';
-        } elsif ($data eq 'scores' || $data eq 'tries') {
-            $Str  .= '"'.&Apache::loncommon::csv_translate($seq->{'title'}).
-                '",';
-            $Str .= '"",'x($seq->{'num_assess_parts'}-1+2);
+        $sequence_row .= '"'.
+            &Apache::loncommon::csv_translate($seq->{'title'}).'",';
+        my $count = 0;
+        if ($chosen_output->{'every_problem'}) {
             foreach my $res (@{$seq->{'contents'}}) {
-                next if ($res->{'type'} ne 'assessment');
+                if ($res->{'type'} ne 'assessment'  || 
+                    ! exists($res->{'parts'})       ||
+                    ref($res->{'parts'}) ne 'ARRAY' ||
+                    scalar(@{$res->{'parts'}}) < 1) {
+                    next;
+                }
                 foreach my $part (@{$res->{'parts'}}) {
-                    $Str2 .= '"'.&Apache::loncommon::csv_translate($res->{'title'}.', Part '.$part).'",';
+                    $resource_row .= '"'.
+                        &Apache::loncommon::csv_translate($res->{'title'}.
+                                                          ', Part '.$part
+                                                          ).'",';
+                    $count++;
                 }
             }
-            $Str2 .= '"score","total possible",';
         }
-    }
-    chop($Str);
-    $Str .= "\n";
-    print $outputfile $Str;
-    if (defined($Str2)) {
-        chop($Str2);
-        $Str2 .= "\n";
-        print $outputfile $Str2;
-    }
-    #
-    # Initialize progress window
-    my $studentcount = scalar(@Apache::lonstatistics::Students);
-    %prog_state=&Apache::lonhtmlcommon::Create_PrgWin
-        ($r,'CSV File Compilation Status',
-         'CSV File Compilation Progress', $studentcount);
+        $sequence_row.='"",'x$count;
+        if ($chosen_output->{'sequence_sum'}) {
+            if($chosen_output->{'correct'}) {
+                $resource_row .= '"sum",';
+            } else {
+                $resource_row .= '"score",';
+            }
+        }
+        if ($chosen_output->{'sequence_max'}) {
+            $sequence_row.= '"",';
+            $resource_row .= '"maximum possible",';
+        }
+    }
+    if ($chosen_output->{'grand_total'}) {
+        $sequence_row.= '"",';
+        $resource_row.= '"Total",';
+    } 
+    if ($chosen_output->{'grand_maximum'}) {
+        $sequence_row.= '"",';
+        $resource_row.= '"Maximum",';
+    } 
+    chomp($sequence_row);
+    chomp($resource_row);
+    print $outputfile $sequence_row."\n";
+    print $outputfile $resource_row."\n";
     return;
 }
 
@@ -1271,7 +1621,12 @@ sub csv_outputstudent {
     # Output student fields
     my @to_show = &get_student_fields_to_show();
     foreach my $field (@to_show) {
-        $Str .= '"'.&Apache::loncommon::csv_translate($student->{$field}).'",';
+        my $value = $student->{$field};
+        if ($field eq 'comments') {
+            $value = &Apache::lonmsg::retrieve_instructor_comments
+                ($student->{'username'},$student->{'domain'});
+        }        
+        $Str .= '"'.&Apache::loncommon::csv_translate($value).'",';
     }
     #
     # Get student assessment data
@@ -1285,9 +1640,11 @@ sub csv_outputstudent {
     }
     #
     # Output performance data
+    my $total = 0;
+    my $maximum = 0;
     foreach my $seq (&Apache::lonstatistics::Sequences_with_Assess()) {
         my ($performance,$performance_length,$score,$seq_max,$rawdata);
-        if ($base eq 'tries') {
+        if ($chosen_output->{'tries'}){
             ($performance,$performance_length,$score,$seq_max,$rawdata) =
                 &StudentTriesOnSequence($student,\%StudentsData,
                                         $seq,'no');
@@ -1296,13 +1653,35 @@ sub csv_outputstudent {
                 &StudentPerformanceOnSequence($student,\%StudentsData,
                                               $seq,'no');
         }
-        if ($data eq 'sum only' || $data eq 'parts correct') {
+        if ($chosen_output->{'every_problem'}) {
+            if ($chosen_output->{'correct'}) {
+                $score = 0;
+                # Deal with number of parts correct data
+                $Str .= '"'.join('","',( map { if ($_>0) { 
+                                                   $score += 1;
+                                                   1; 
+                                               } else { 
+                                                   0; 
+                                               }
+                                             } @$rawdata)).'",';
+            } else {
+                $Str .= '"'.join('","',(@$rawdata)).'",';
+            }
+        }
+        if ($chosen_output->{'sequence_sum'}) {
             $Str .= '"'.$score.'",';
-        } elsif ($data eq 'sum and total' || $data eq 'parts correct total') {
-            $Str  .= '"'.$score.'","'.$seq_max.'",';
-        } elsif ($data eq 'scores' || $data eq 'tries') {
-            $Str .= '"'.join('","',(@$rawdata,$score,$seq_max)).'",';
+        } 
+        if ($chosen_output->{'sequence_max'}) {
+            $Str .= '"'.$seq_max.'",';
         }
+        $total+=$score;
+        $maximum += $seq_max;
+    }
+    if ($chosen_output->{'grand_total'}) {
+        $Str .= '"'.$total.'",';
+    }
+    if ($chosen_output->{'grand_maximum'}) {
+        $Str .= '"'.$maximum.'",';
     }
     chop($Str);
     $Str .= "\n";
@@ -1327,7 +1706,7 @@ sub csv_finish {
     #
     # Tell the user where to get their csv file
     $r->print('<br />'.
-              '<a href="'.$filename.'">Your csv file.</a>'."\n");
+              '<a href="'.$filename.'">'.&mt('Your csv file.').'</a>'."\n");
     $r->rflush();
     return;
     
@@ -1360,68 +1739,90 @@ Inputs:
 
 #######################################################
 #######################################################
-sub StudentTriesOnSequence {
-    my ($student,$studentdata,$seq,$links) = @_;
+sub student_tries_on_sequence {
+    my ($student,$studentdata,$navmap,$seq,$links) = @_;
     $links = 'no' if (! defined($links));
     my $Str = '';
     my ($sum,$max) = (0,0);
     my $performance_length = 0;
     my @TriesData = ();
     my $tries;
-    foreach my $resource (@{$seq->{'contents'}}) {
-        next if ($resource->{'type'} ne 'assessment');
-        my $resource_data = $studentdata->{$resource->{'symb'}};
+    my $hasdata = 0; # flag - true if the student has any data on the sequence
+    my @resources = 
+        $navmap->retrieveResources($seq,sub { shift->is_problem(); },0,0,0);
+    foreach my $resource (@resources) {
+        my $resource_data = $studentdata->{$resource->symb};
         my $value = '';
-        foreach my $partnum (@{$resource->{'parts'}}) {
+        foreach my $partnum (@{$resource->parts()}) {
             $tries = undef;
             $max++;
             $performance_length++;
             my $symbol = ' '; # default to space
             #
+            my $awarded = 0;
+            if (exists($resource_data->{'resource.'.$partnum.'.awarded'})) {
+                $awarded = $resource_data->{'resource.'.$partnum.'.awarded'};
+                $awarded = 0 if (! $awarded);
+            }
+            #
+            my $status = '';
             if (exists($resource_data->{'resource.'.$partnum.'.solved'})) {
-                my $status = $resource_data->{'resource.'.$partnum.'.solved'};
-                if ($status eq 'correct_by_override') {
-                    $symbol = '+';
-                    $sum++;
-                } elsif ($status eq 'incorrect_by_override') {
-                    $symbol = '-';
-                } elsif ($status eq 'ungraded_attempted') {
-                    $symbol = '#';
-                } elsif ($status eq 'incorrect_attempted')  {
-                    $symbol = '.';
-                } elsif ($status eq 'excused') {
+                $status = $resource_data->{'resource.'.$partnum.'.solved'};
+            }
+            #
+            my $tries = 0;
+            if(exists($resource_data->{'resource.'.$partnum.'.tries'})) {
+                $tries = $resource_data->{'resource.'.$partnum.'.tries'};
+                $hasdata =1;
+            }
+            #
+            if ($awarded > 0) {
+                # The student has gotten the problem correct to some degree
+                if ($status eq 'excused') {
                     $symbol = 'x';
                     $max--;
-                } elsif ($status eq 'correct_by_student' &&
-                    exists($resource_data->{'resource.'.$partnum.'.tries'})){
-                    $tries = $resource_data->{'resource.'.$partnum.'.tries'};
+                } elsif ($status eq 'correct_by_override') {
+                    $symbol = '+';
+                    $sum++;
+                } elsif ($tries > 0) {
                     if ($tries > 9) {
                         $symbol = '*';
-                    } elsif ($tries > 0) {
-                        $symbol = $tries;
                     } else {
-                        $symbol = ' ';
+                        $symbol = $tries;
                     }
                     $sum++;
-                } elsif (exists($resource_data->{'resource.'.
-                                                     $partnum.'.tries'})){
-                    $symbol = '.';
                 } else {
-                    $symbol = ' ';
+                    $symbol = '+';
+                    $sum++;
                 }
             } else {
-                # Unsolved.  Did they try?
-                if (exists($resource_data->{'resource.'.$partnum.'.tries'})){
+                # The student has the problem incorrect or it is ungraded
+                if ($status eq 'excused') {
+                    $symbol = 'x';
+                    $max--;
+                } elsif ($status eq 'incorrect_by_override') {
+                    $symbol = '-';
+                } elsif ($status eq 'ungraded_attempted') {
+                    $symbol = '#';
+                } elsif ($status eq 'incorrect_attempted' ||
+                         $tries > 0)  {
                     $symbol = '.';
                 } else {
-                    $symbol = ' ';
+                    # Problem is wrong and has not been attempted.
+                    $symbol=' ';
                 }
             }
             #
             if (! defined($tries)) {
-                $tries = $symbol;
+                $tries = 0;
+            }
+            if ($status =~ /^(incorrect|ungraded)/) {
+                # Bug 3390: show '-' for tries on incorrect problems 
+                # (csv & excel only)
+                push(@TriesData,-$tries);
+            } else {
+                push (@TriesData,$tries);
             }
-            push (@TriesData,$tries);
             #
             if ( ($links eq 'yes' && $symbol ne ' ') ||
                  ($links eq 'all')) {
@@ -1429,7 +1830,7 @@ sub StudentTriesOnSequence {
                     &Apache::lonnet::logthis('length of symbol "'.$symbol.'" > 1');
                 }
                 $symbol = '<a href="/adm/grades'.
-                    '?symb='.&Apache::lonnet::escape($resource->{'symb'}).
+                    '?symb='.&Apache::lonnet::escape($resource->symb).
                         '&student='.$student->{'username'}.
                             '&userdom='.$student->{'domain'}.
                                 '&command=submission">'.$symbol.'</a>';
@@ -1438,8 +1839,11 @@ sub StudentTriesOnSequence {
         }
         $Str .= $value;
     }
-    if ($seq->{'randompick'}) {
-        $max = $seq->{'randompick'};
+    if ($seq->randompick()) {
+        $max = $seq->randompick();
+    }
+    if (! $hasdata && $sum == 0) {
+        $sum = ' ';
     }
     return ($Str,$performance_length,$sum,$max,\@TriesData);
 }
@@ -1469,8 +1873,8 @@ Inputs:
 
 #######################################################
 #######################################################
-sub StudentPerformanceOnSequence {
-    my ($student,$studentdata,$seq,$links) = @_;
+sub student_performance_on_sequence {
+    my ($student,$studentdata,$navmap,$seq,$links) = @_;
     $links = 'no' if (! defined($links));
     my $Str = ''; # final result string
     my ($score,$max) = (0,0);
@@ -1478,13 +1882,16 @@ sub StudentPerformanceOnSequence {
     my $symbol;
     my @ScoreData = ();
     my $partscore;
-    foreach my $resource (@{$seq->{'contents'}}) {
-        next if ($resource->{'type'} ne 'assessment');
-        my $resource_data = $studentdata->{$resource->{'symb'}};
-        foreach my $part (@{$resource->{'parts'}}) {
+    my $hasdata = 0; # flag, 0 if there were no submissions on the sequence
+    my @resources = 
+        $navmap->retrieveResources($seq,sub { shift->is_problem(); },0,0,0);
+    foreach my $resource (@resources) {
+        my $symb = $resource->symb;
+        my $resource_data = $studentdata->{$symb};
+        foreach my $part (@{$resource->parts()}) {
             $partscore = undef;
             my $weight = &Apache::lonnet::EXT('resource.'.$part.'.weight',
-                                              $resource->{'symb'},
+                                              $symb,
                                               $student->{'domain'},
                                               $student->{'username'},
                                               $student->{'section'});
@@ -1496,14 +1903,22 @@ sub StudentPerformanceOnSequence {
             $performance_length++; # one character per part
             $symbol = ' '; # default to space
             #
-            my $awarded = 0;
+            my $awarded;
             if (exists($resource_data->{'resource.'.$part.'.awarded'})) {
                 $awarded = $resource_data->{'resource.'.$part.'.awarded'};
+                $awarded = 0 if (! $awarded);
+                $hasdata = 1;
             }
             #
             $partscore = $weight*$awarded;
+            if (! defined($awarded)) {
+                $partscore = undef;
+            }
             $score += $partscore;
             $symbol = $partscore; 
+            if (abs($symbol - sprintf("%.0f",$symbol)) < 0.001) {
+                $symbol = sprintf("%.0f",$symbol);
+            }
             if (length($symbol) > 1) {
                 $symbol = '*';
             }
@@ -1513,10 +1928,12 @@ sub StudentPerformanceOnSequence {
                     $symbol = 'x';
                     $max -= $weight; # Do not count 'excused' problems.
                 }
-            } else {
+                $hasdata = 1;
+            } elsif (!exists($resource_data->{'resource.'.$part.'.awarded'})){
                 # Unsolved.  Did they try?
                 if (exists($resource_data->{'resource.'.$part.'.tries'})){
                     $symbol = '.';
+                    $hasdata = 1;
                 } else {
                     $symbol = ' ';
                 }
@@ -1529,7 +1946,7 @@ sub StudentPerformanceOnSequence {
             #
             if ( ($links eq 'yes' && $symbol ne ' ') || ($links eq 'all')) {
                 $symbol = '<a href="/adm/grades'.
-                    '?symb='.&Apache::lonnet::escape($resource->{'symb'}).
+                    '?symb='.&Apache::lonnet::escape($symb).
                     '&student='.$student->{'username'}.
                     '&userdom='.$student->{'domain'}.
                     '&command=submission">'.$symbol.'</a>';
@@ -1537,6 +1954,9 @@ sub StudentPerformanceOnSequence {
             $Str .= $symbol;
         }
     }
+    if (! $hasdata && $score == 0) {
+        $score = ' ';
+    }
     return ($Str,$performance_length,$score,$max,\@ScoreData);
 }