--- loncom/loncron	2003/09/10 19:13:09	1.42
+++ loncom/loncron	2024/10/24 19:48:51	1.134
@@ -1,590 +1,1896 @@
 #!/usr/bin/perl
 
-# The LearningOnline Network
-# Housekeeping program, started by cron
+# Housekeeping program, started by cron, loncontrol and loncron.pl
+#
+# $Id: loncron,v 1.134 2024/10/24 19:48:51 raeburn Exp $
+#
+# Copyright Michigan State University Board of Trustees
+#
+# This file is part of the LearningOnline Network with CAPA (LON-CAPA).
+#
+# LON-CAPA is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# LON-CAPA is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with LON-CAPA; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+#
+# /home/httpd/html/adm/gpl.txt
+#
+# http://www.lon-capa.org/
 #
-# (TCP networking package
-# 6/1/99,6/2,6/10,6/11,6/12,6/14,6/26,6/28,6/29,6/30,
-# 7/1,7/2,7/9,7/10,7/12 Gerd Kortemeyer)
-#
-# 7/14,7/15,7/19,7/21,7/22,11/18,
-# 2/8 Gerd Kortemeyer
-# 12/23 Gerd Kortemeyer
-# YEAR=2001
-# 09/04,09/06,11/26 Gerd Kortemeyer
 
 $|=1;
+use strict;
 
 use lib '/home/httpd/lib/perl/';
 use LONCAPA::Configuration;
+use LONCAPA::Checksumming;
+use LONCAPA;
+use LONCAPA::LWPReq;
+use Apache::lonnet;
+use Apache::loncommon;
 
 use IO::File;
 use IO::Socket;
+use HTML::Entities;
+use Getopt::Long;
+use GDBM_File qw(GDBM_READER);
+use Storable qw(thaw);
+use File::ReadBackwards;
+use File::Copy;
+use Sys::Hostname::FQDN();
+
+#globals
+use vars qw (%perlvar %simplestatus $errors $warnings $notices $totalcount);
+
+my $statusdir="/home/httpd/html/lon-status";
 
-# -------------------------------------------------- Non-critical communication
-sub reply {
-    my ($cmd,$server)=@_;
-    my $peerfile="$perlvar{'lonSockDir'}/$server";
-    my $client=IO::Socket::UNIX->new(Peer    =>"$peerfile",
-                                     Type    => SOCK_STREAM,
-                                     Timeout => 10)
-       or return "con_lost";
-    print $client "$cmd\n";
-    my $answer=<$client>;
-    chomp($answer);
-    if (!$answer) { $answer="con_lost"; }
-    return $answer;
-}
 
 # --------------------------------------------------------- Output error status
 
+sub log {
+    my $fh=shift;
+    if ($fh) {	print $fh @_  }
+}
+
 sub errout {
    my $fh=shift;
-   print $fh (<<ENDERROUT);
-     <p><table border=2 bgcolor="#CCCCCC">
+   &log($fh,(<<ENDERROUT));
+     <table border="2" bgcolor="#CCCCCC">
      <tr><td>Notices</td><td>$notices</td></tr>
      <tr><td>Warnings</td><td>$warnings</td></tr>
      <tr><td>Errors</td><td>$errors</td></tr>
-     </table><p><a href="#top">Top</a><p>
+     </table><p><a href="#top">Top</a></p>
 ENDERROUT
 }
 
+sub rotate_logfile {
+    my ($file,$fh,$description) = @_;
+    my $size=(stat($file))[7];
+    if ($size>40000) {
+	&log($fh,"<p>Rotating $description ...</p>");
+	rename("$file.2","$file.3");
+	rename("$file.1","$file.2");
+	rename("$file","$file.1");
+    }
+}
+
 sub start_daemon {
-    my ($fh,$daemon,$pidfile) = @_;
-    system("$perlvar{'lonDaemons'}/$daemon 2>>$perlvar{'lonDaemons'}/logs/${daemon}_errors");
-    sleep 2;
+    my ($fh,$daemon,$pidfile,$args) = @_;
+    my $progname=$daemon;
+    if ($daemon eq 'lonc') {
+	$progname='loncnew';
+    }
+    my $error_fname="$perlvar{'lonDaemons'}/logs/${daemon}_errors";
+    &rotate_logfile($error_fname,$fh,'error logs');
+    if ($daemon eq 'lonc') {
+	&clean_sockets($fh);
+    }
+    system("$perlvar{'lonDaemons'}/$progname 2>$perlvar{'lonDaemons'}/logs/${daemon}_errors");
+    sleep 1;
     if (-e $pidfile) {
-	print $fh "Seems like it started ...<p>";
+	&log($fh,"<p>Seems like it started ...</p>");
 	my $lfh=IO::File->new("$pidfile");
 	my $daemonpid=<$lfh>;
 	chomp($daemonpid);
-	sleep 2;
-	if (kill 0 => $daemonpid) {
+	if ($daemonpid =~ /^\d+$/ && kill 0 => $daemonpid) {
 	    return 1;
 	} else {
 	    return 0;
 	}
     }
-    print $fh "Seems like that did not work!<p>";
+    &log($fh,"<p>Seems like that did not work!</p>");
     $errors++;
     return 0;
 }
 
 sub checkon_daemon {
-    my ($fh,$daemon,$maxsize,$sendusr1)=@_;
+    my ($fh,$daemon,$maxsize,$send,$args)=@_;
 
-    print $fh '<hr><a name="'.$daemon.'"><h2>'.$daemon.'</h2><h3>Log</h3><pre>';
-    printf("%-10s ",$daemon);
-    if (-e "$perlvar{'lonDaemons'}/logs/$daemon.log"){
-	open (DFH,"tail -n25 $perlvar{'lonDaemons'}/logs/$daemon.log|");
-	while ($line=<DFH>) { 
-	    print $fh "$line";
-	    if ($line=~/INFO/) { $notices++; }
-	    if ($line=~/WARNING/) { $notices++; }
-	    if ($line=~/CRITICAL/) { $warnings++; }
-	};
-	close (DFH);
+    my $result;
+    &log($fh,'<hr /><a name="'.$daemon.'" /><h2>'.$daemon.'</h2><h3>Log</h3><p style="white-space: pre;"><tt>');
+    printf("%-15s ",$daemon);
+    if ($fh) {
+        if (-e "$perlvar{'lonDaemons'}/logs/$daemon.log"){
+	    if (open(DFH,"tail -n25 $perlvar{'lonDaemons'}/logs/$daemon.log|")) {
+	        while (my $line=<DFH>) {
+	            &log($fh,"$line");
+	            if ($line=~/INFO/) { $notices++; }
+	            if ($line=~/WARNING/) { $notices++; }
+	            if ($line=~/CRITICAL/) { $warnings++; }
+	        }
+	        close (DFH);
+            }
+        }
+        &log($fh,"</tt></p>");
     }
-    print $fh "</pre>";
-    
+
     my $pidfile="$perlvar{'lonDaemons'}/logs/$daemon.pid";
-    
+ 
     my $restartflag=1;
-    
+    my $daemonpid;
     if (-e $pidfile) {
 	my $lfh=IO::File->new("$pidfile");
-	my $daemonpid=<$lfh>;
+	$daemonpid=<$lfh>;
 	chomp($daemonpid);
-	if (kill 0 => $daemonpid) {
-	    print $fh "<h3>$daemon at pid $daemonpid responding";
-	    if ($sendusr1) { print $fh ", sending USR1"; }
-	    print $fh "</h3>";
-	    if ($sendusr1) { kill USR1 => $daemonpid; }
+	if ($daemonpid =~ /^\d+$/ && kill 0 => $daemonpid) {
+	    &log($fh,"<h3>$daemon at pid $daemonpid responding");
+	    if ($send) { &log($fh,", sending $send"); }
+	    &log($fh,"</h3>");
+	    if ($send eq 'USR1') { kill USR1 => $daemonpid; }
+	    if ($send eq 'USR2') { kill USR2 => $daemonpid; }
 	    $restartflag=0;
-	    print "running\n";
+	    if ($send eq 'USR2') {
+		$result = 'reloaded';
+		print "reloaded\n";
+	    } else {
+		$result = 'running';
+		print "running\n";
+	    }
 	} else {
 	    $errors++;
-	    print $fh "<h3>$daemon at pid $daemonpid not responding</h3>";
+	    &log($fh,"<h3>$daemon at pid $daemonpid not responding</h3>");
 	    $restartflag=1;
-	    print $fh "<h3>Decided to clean up stale .pid file and restart $daemon</h3>";
+	    &log($fh,"<h3>Decided to clean up stale .pid file and restart $daemon</h3>");
 	}
     }
     if ($restartflag==1) {
 	$simplestatus{$daemon}='off';
 	$errors++;
-	print $fh '<br><font color="red">Killall '.$daemon.': '.
-	    `killall $daemon 2>&1`.' - ';
-	sleep 2;
-	print $fh unlink($pidfile).' - '.
-	    `killall -9 $daemon 2>&1`.
-	    '</font><br>';
-	print $fh "<h3>$daemon not running, trying to start</h3>";
-	
-	if (&start_daemon($fh,$daemon,$pidfile)) {
-	    print $fh "<h3>$daemon at pid $daemonpid responding</h3>";
+	my $kadaemon=$daemon;
+	if ($kadaemon eq 'lonmemcached') { $kadaemon='memcached'; }
+	&log($fh,'<br /><font color="red">Killall '.$daemon.': '.
+	    `killall $kadaemon 2>&1`.' - ');
+	sleep 1;
+	&log($fh,unlink($pidfile).' - '.
+	    `killall -9 $kadaemon 2>&1`.
+	    '</font><br />');
+        if ($kadaemon eq 'loncnew') {
+            &clean_lonc_childpids();
+        }
+	&log($fh,"<h3>$daemon not running, trying to start</h3>");
+
+	if (&start_daemon($fh,$daemon,$pidfile,$args)) {
+	    &log($fh,"<h3>$daemon at pid $daemonpid responding</h3>");
 	    $simplestatus{$daemon}='restarted';
+	    $result = 'started';
 	    print "started\n";
 	} else {
 	    $errors++;
-	    print $fh "<h3>$daemon at pid $daemonpid not responding</h3>";
-	    print $fh "Give it one more try ...<p>";
+	    &log($fh,"<h3>$daemon at pid $daemonpid not responding</h3>");
+	    &log($fh,"<p>Give it one more try ...</p>");
 	    print " ";
-	    if (&start_daemon($fh,$daemon,$pidfile)) {
-		print $fh "<h3>$daemon at pid $daemonpid responding</h3>";
+	    if (&start_daemon($fh,$daemon,$pidfile,$args)) {
+		&log($fh,"<h3>$daemon at pid $daemonpid responding</h3>");
 		$simplestatus{$daemon}='restarted';
+		$result = 'started';
 		print "started\n";
 	    } else {
+		$result = 'failed';
 		print " failed\n";
 		$simplestatus{$daemon}='failed';
 		$errors++; $errors++;
-		print $fh "<h3>$daemon at pid $daemonpid not responding</h3>";
-		print $fh "Unable to start $daemon<p>";
+		&log($fh,"<h3>$daemon at pid $daemonpid not responding</h3>");
+		&log($fh,"<p>Unable to start $daemon</p>");
 	    }
 	}
-
-	if (-e "$perlvar{'lonDaemons'}/logs/$daemon.log"){
-	    print $fh "<p><pre>";
-	    open (DFH,"tail -n100 $perlvar{'lonDaemons'}/logs/$daemon.log|");
-	    while ($line=<DFH>) { 
-		print $fh "$line";
-		if ($line=~/WARNING/) { $notices++; }
-		if ($line=~/CRITICAL/) { $notices++; }
-	    };
-	    close (DFH);
-	    print $fh "</pre>";
+        if ($fh) {
+	    if (-e "$perlvar{'lonDaemons'}/logs/$daemon.log"){
+	        &log($fh,"<p><pre>");
+	        if (open(DFH,"tail -n100 $perlvar{'lonDaemons'}/logs/$daemon.log|")) {
+	            while (my $line=<DFH>) { 
+		        &log($fh,"$line");
+		        if ($line=~/WARNING/) { $notices++; }
+		        if ($line=~/CRITICAL/) { $notices++; }
+	            }
+	            close (DFH);
+                }
+	        &log($fh,"</pre></p>");
+            }
 	}
     }
-    
-    $fname="$perlvar{'lonDaemons'}/logs/$daemon.log";
-    
-    my ($dev,$ino,$mode,$nlink,
-	$uid,$gid,$rdev,$size,
-	$atime,$mtime,$ctime,
-	$blksize,$blocks)=stat($fname);
-    
-    if ($size>$maxsize) {
-	print $fh "Rotating logs ...<p>";
-	rename("$fname.2","$fname.3");
-	rename("$fname.1","$fname.2");
-	rename("$fname","$fname.1");
-    }
+
+    my $fname="$perlvar{'lonDaemons'}/logs/$daemon.log";
+    &rotate_logfile($fname,$fh,'logs');
 
     &errout($fh);
+    return $result;
 }
-# ================================================================ Main Program
-
-# --------------------------------- Read loncapa_apache.conf and loncapa.conf
-my $perlvarref=LONCAPA::Configuration::read_conf('loncapa.conf');
-%perlvar=%{$perlvarref};
-undef $perlvarref;
-delete $perlvar{'lonReceipt'}; # remove since sensitive and not needed
-delete $perlvar{'lonSqlAccess'}; # remove since sensitive and not needed
 
-# --------------------------------------- Make sure that LON-CAPA is configured
-# I only test for one thing here (lonHostID).  This is just a safeguard.
-if ('{[[[[lonHostID]]]]}' eq $perlvar{'lonHostID'}) {
-   print("Unconfigured machine.\n");
-   $emailto=$perlvar{'lonSysEMail'};
-   $hostname=`/bin/hostname`;
-   chop $hostname;
-   $hostname=~s/[^\w\.]//g; # make sure is safe to pass through shell
-   $subj="LON: Unconfigured machine $hostname";
-   system("echo 'Unconfigured machine $hostname.' |\
- mailto $emailto -s '$subj' > /dev/null");
-    exit 1;
-}
+# --------------------------------------------------------------------- Machine
+sub log_machine_info {
+    my ($fh)=@_;
+    &log($fh,'<hr /><a name="machine" /><h2>Machine Information</h2>');
+    &log($fh,"<h3>loadavg</h3>");
+
+    my $cpucount;
+    if (open(PIPE,"lscpu |grep '^CPU(s)' 2>&1 |")) {
+        my $info = <PIPE>;
+        chomp($info);
+        ($cpucount) = ($info =~ /^\QCPU(s):\E\s+(\d+)$/);
+        close(PIPE);
+    }
+    if (!$cpucount) {
+        $cpucount = 1;
+    }
+    my %loadtarget = (
+                        error => 4.0*$cpucount,
+                        warn  => 2.0*$cpucount,
+                        note  => 1.0*$cpucount,
+                     );
+    open (LOADAVGH,"/proc/loadavg");
+    my $loadavg=<LOADAVGH>;
+    close (LOADAVGH);
+ 
+    &log($fh,"<tt>$loadavg</tt>");
 
-# ----------------------------- Make sure this process is running from user=www
-my $wwwid=getpwnam('www');
-if ($wwwid!=$<) {
-   print("User ID mismatch.  This program must be run as user 'www'\n");
-   $emailto="$perlvar{'lonAdmEMail'},$perlvar{'lonSysEMail'}";
-   $subj="LON: $perlvar{'lonHostID'} User ID mismatch";
-   system("echo 'User ID mismatch.  loncron must be run as user www.' |\
- mailto $emailto -s '$subj' > /dev/null");
-   exit 1;
-}
-
-# ------------------------------------------------------------- Read hosts file
-{
-    my $config=IO::File->new("$perlvar{'lonTabDir'}/hosts.tab");
-
-    while (my $configline=<$config>) {
-	my ($id,$domain,$role,$name,$ip,$domdescr)=split(/:/,$configline);
-	if ($id && $domain && $role && $name && $ip) {
-	    $hostname{$id}=$name;
-	    $hostdom{$id}=$domain;
-	    $hostip{$id}=$ip;
-	    $hostrole{$id}=$role;
-	    if ($domdescr) { $domaindescription{$domain}=$domdescr; }
-	    if (($role eq 'library') && ($id ne $perlvar{'lonHostID'})) {
-		$libserv{$id}=$name;
-	    }
-	} else {
-	    if ($configline) {
-#		&logthis("Skipping hosts.tab line -$configline-");
-	    }
-	}
+    my @parts=split(/\s+/,$loadavg);
+    if ($parts[1]>$loadtarget{'error'}) {
+	$errors++;
+    } elsif ($parts[1]>$loadtarget{'warn'}) {
+	$warnings++;
+    } elsif ($parts[1]>$loadtarget{'note'}) {
+	$notices++;
     }
-}
 
-# ------------------------------------------------------ Read spare server file
-{
-    my $config=IO::File->new("$perlvar{'lonTabDir'}/spare.tab");
-
-    while (my $configline=<$config>) {
-       chomp($configline);
-       if (($configline) && ($configline ne $perlvar{'lonHostID'})) {
-          $spareid{$configline}=1;
-       }
+    &log($fh,"<h3>df</h3>");
+    &log($fh,"<pre>");
+
+    open (DFH,"df|");
+    while (my $line=<DFH>) {
+	&log($fh,&encode_entities($line,'<>&"'));
+	@parts=split(/\s+/,$line);
+	my $usage=$parts[4];
+	$usage=~s/\W//g;
+	if ($usage>90) {
+	    $warnings++;
+	    $notices++;
+	} elsif ($usage>80) {
+	    $warnings++;
+	} elsif ($usage>60) {
+	    $notices++;
+	}
+	if ($usage>95) { $warnings++; $warnings++; $simplestatus{'diskfull'}++; }
     }
-}
+    close (DFH);
+    &log($fh,"</pre>");
 
-# ---------------------------------------------------------------- Start report
 
-$statusdir="/home/httpd/html/lon-status";
+    &log($fh,"<h3>ps</h3>");
+    &log($fh,"<pre>");
+    my $psproc=0;
+
+    open (PSH,"ps aux --cols 140 |");
+    while (my $line=<PSH>) {
+	&log($fh,&encode_entities($line,'<>&"'));
+	$psproc++;
+    }
+    close (PSH);
+    &log($fh,"</pre>");
 
-$errors=0;
-$warnings=0;
-$notices=0;
+    if ($psproc>200) { $notices++; }
+    if ($psproc>250) { $notices++; }
 
-$now=time;
-$date=localtime($now);
+    &log($fh,"<h3>distprobe</h3>");
+    &log($fh,"<pre>");
+    &log($fh,&encode_entities(&LONCAPA::distro(),'<>&"'));
+    &log($fh,"</pre>");
 
-{
-my $fh=IO::File->new(">$statusdir/newstatus.html");
-my %simplestatus=();
+    &errout($fh);
+}
 
-print $fh (<<ENDHEADERS);
-<html>
+sub start_logging {
+    my $fh=IO::File->new(">$statusdir/newstatus.html");
+    %simplestatus=();
+    my $now=time;
+    my $date=localtime($now);
+ 
+
+    &log($fh,(<<ENDHEADERS));
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
 <head>
 <title>LON Status Report $perlvar{'lonHostID'}</title>
+<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
 </head>
 <body bgcolor="#AAAAAA">
-<a name="top">
+<a name="top" />
 <h1>LON Status Report $perlvar{'lonHostID'}</h1>
 <h2>$date ($now)</h2>
 <ol>
-<li><a href="#configuration">Configuration</a>
-<li><a href="#machine">Machine Information</a>
-<li><a href="#tmp">Temporary Files</a>
-<li><a href="#tokens">Session Tokens</a>
-<li><a href="#httpd">httpd</a>
-<li><a href="#lonsql">lonsql</a>
-<li><a href="#lond">lond</a>
-<li><a href="#lonc">lonc</a>
-<li><a href="#lonhttpd">lonhttpd</a>
-<li><a href="#lonnet">lonnet</a>
-<li><a href="#connections">Connections</a>
-<li><a href="#delayed">Delayed Messages</a>
-<li><a href="#errcount">Error Count</a>
+<li><a href="#configuration">Configuration</a></li>
+<li><a href="#machine">Machine Information</a></li>
+<li><a href="#tmp">Temporary Files</a></li>
+<li><a href="#tokens">Session Tokens</a></li>
+<li><a href="#webdav">WebDAV Session Tokens</a></li>
+<li><a href="#httpd">httpd</a></li>
+<li><a href="#lonsql">lonsql</a></li>
+<li><a href="#lond">lond</a></li>
+<li><a href="#lonc">lonc</a></li>
+<li><a href="#lonnet">lonnet</a></li>
+<li><a href="#connections">Connections</a></li>
+<li><a href="#bashconf">bash readline config</a></li>
+<li><a href="#delayed">Delayed Messages</a></li>
+<li><a href="#errcount">Error Count</a></li>
 </ol>
-<hr>
-<a name="configuration">
+<hr />
+<a name="configuration" />
 <h2>Configuration</h2>
 <h3>PerlVars</h3>
-<table border=2>
+<table border="2">
 ENDHEADERS
 
-foreach $varname (sort(keys(%perlvar))) {
-    print $fh "<tr><td>$varname</td><td>$perlvar{$varname}</td></tr>\n";
+    foreach my $varname (sort(keys(%perlvar))) {
+	&log($fh,"<tr><td>$varname</td><td>".
+	     &encode_entities($perlvar{$varname},'<>&"')."</td></tr>\n");
+    }
+    &log($fh,"</table><h3>Hosts</h3><table border='2'>");
+    my %hostname = &Apache::lonnet::all_hostnames();
+    foreach my $id (sort(keys(%hostname))) {
+	my $role = (&Apache::lonnet::is_library($id) ? 'library'
+		                                     : 'access');
+	&log($fh,
+	    "<tr><td>$id</td><td>".&Apache::lonnet::host_domain($id).
+	    "</td><td>".$role.
+	    "</td><td>".&Apache::lonnet::hostname($id)."</td></tr>\n");
+    }
+    &log($fh,"</table><h3>Spare Hosts</h3>");
+    if (keys(%Apache::lonnet::spareid) > 0) {
+        &log($fh,"<ul>");
+        foreach my $type (sort(keys(%Apache::lonnet::spareid))) {
+	    &log($fh,"<li>$type\n<ol>");
+	    foreach my $id (@{ $Apache::lonnet::spareid{$type} }) {
+	        &log($fh,"<li>$id</li>\n");
+	    }
+	    &log($fh,"</ol>\n</li>\n");
+        }
+        &log($fh,"</ul>\n");
+    } else {
+        &log($fh,"No spare hosts specified<br />\n");
+    }
+    return $fh;
+}
+
+# --------------------------------------------------------------- clean out tmp
+sub clean_tmp {
+    my ($fh)=@_;
+    &log($fh,'<hr /><a name="tmp" /><h2>Temporary Files</h2>');
+    my ($cleaned,$old,$removed) = (0,0,0);
+    my %errors = (
+                     dir       => [],
+                     file      => [],
+                     failopen  => [],
+                 );
+    my %error_titles = (
+                         dir       => 'failed to remove empty directory:',
+                         file      => 'failed to unlike stale file',
+                         failopen  => 'failed to open file or directory'
+                       );
+    ($cleaned,$old,$removed) = &recursive_clean_tmp('',$cleaned,$old,$removed,\%errors);
+    &log($fh,"Cleaned up: ".$cleaned." files; removed: $removed empty directories; (found: $old old checkout tokens)");
+    foreach my $key (sort(keys(%errors))) {
+        if (ref($errors{$key}) eq 'ARRAY') {
+            if (@{$errors{$key}} > 0) {
+                &log($fh,"Error during cleanup ($error_titles{$key}):<ul><li>".
+                     join('</li><li><tt>',@{$errors{$key}}).'</tt></li></ul><br />');
+            }
+        }
+    }
 }
-print $fh "</table><h3>Hosts</h3><table border=2>";
-foreach $id (sort(keys(%hostname))) {
-    print $fh 
-	"<tr><td>$id</td><td>$hostdom{$id}</td><td>$hostrole{$id}</td>";
-    print $fh "<td>$hostname{$id}</td><td>$hostip{$id}</td></tr>\n";
+
+sub recursive_clean_tmp {
+    my ($subdir,$cleaned,$old,$removed,$errors) = @_;
+    my $base = "$perlvar{'lonDaemons'}/tmp";
+    my $path = $base;
+    next if ($subdir =~ m{\.\./});
+    next unless (ref($errors) eq 'HASH');
+    unless ($subdir eq '') {
+        $path .= '/'.$subdir;
+    }
+    if (opendir(my $dh,"$path")) {
+        while (my $file = readdir($dh)) {
+            next if ($file =~ /^\.\.?$/);
+            my $fname = "$path/$file";
+            if (-d $fname) {
+                my $innerdir;
+                if ($subdir eq '') {
+                    $innerdir = $file;
+                } else {
+                    $innerdir = $subdir.'/'.$file;
+                }
+                ($cleaned,$old,$removed) = 
+                     &recursive_clean_tmp($innerdir,$cleaned,$old,$removed,$errors);
+                my @doms = &Apache::lonnet::current_machine_domains();
+
+                if (open(my $dirhandle,$fname)) {
+                    unless (($innerdir eq 'helprequests') ||
+                            (($innerdir =~ /^addcourse/) && ($innerdir !~ m{/\d+$}))) {
+                        my @contents = grep {!/^\.\.?$/} readdir($dirhandle);
+                                      join('&&',@contents)."\n";
+                        if (scalar(grep {!/^\.\.?$/} readdir($dirhandle)) == 0) {
+                            closedir($dirhandle);
+                            if ($fname =~ m{^\Q$perlvar{'lonDaemons'}\E/tmp/}) {
+                                if (rmdir($fname)) {
+                                    $removed ++;
+                                } elsif (ref($errors->{dir}) eq 'ARRAY') {
+                                    push(@{$errors->{dir}},$fname);
+                                }
+                            }
+                        }
+                    } else {
+                        closedir($dirhandle);
+                    }
+                }
+            } else {
+                my ($dev,$ino,$mode,$nlink,
+                    $uid,$gid,$rdev,$size,
+                    $atime,$mtime,$ctime,
+                    $blksize,$blocks)=stat($fname);
+                my $now=time;
+                my $since=$now-$mtime;
+                if ($since>$perlvar{'lonExpire'}) {
+                    if ($subdir eq '') {
+                        my $line='';
+                        if ($fname =~ /\.db$/) {
+                            if (unlink($fname)) {
+                                $cleaned++;
+                            } elsif (ref($errors->{file}) eq 'ARRAY') {
+                                push(@{$errors->{file}},$fname);
+                            }
+                        } elsif (open(PROBE,$fname)) {
+                            my $line='';
+                            $line=<PROBE>;
+                            close(PROBE);
+                            if ($line=~/^CHECKOUTTOKEN\&/) {
+                                if ($since>365*$perlvar{'lonExpire'}) {
+                                    if (unlink($fname)) {
+                                        $cleaned++; 
+                                    } elsif (ref($errors->{file}) eq 'ARRAY') {
+                                        push(@{$errors->{file}},$fname);
+                                    }
+                                } else {
+                                    $old++;
+                                }
+                            } else {
+                                if (unlink($fname)) {
+                                    $cleaned++;
+                                } elsif (ref($errors->{file}) eq 'ARRAY') {
+                                    push(@{$errors->{file}},$fname);
+                                }
+                            }
+                        } elsif (ref($errors->{failopen}) eq 'ARRAY') {
+                            push(@{$errors->{failopen}},$fname);
+                        }
+                    } else {
+                        if (unlink($fname)) {
+                            $cleaned++;
+                        } elsif (ref($errors->{file}) eq 'ARRAY') {
+                            push(@{$errors->{file}},$fname);
+                        }
+                    }
+                }
+            }
+        }
+        closedir($dh);
+    } elsif (ref($errors->{failopen}) eq 'ARRAY') {
+        push(@{$errors->{failopen}},$path);
+    }
+    return ($cleaned,$old,$removed);
 }
-print $fh "</table><h3>Spare Hosts</h3><ol>";
-foreach $id (sort(keys(%spareid))) {
-    print $fh "<li>$id\n";
+
+# ------------------------------------------------------------ clean out lonIDs
+sub clean_lonIDs {
+    my ($fh)=@_;
+    &log($fh,'<hr /><a name="tokens" /><h2>Session Tokens</h2>');
+    my $cleaned=0;
+    my $active=0;
+    while (my $fname=<$perlvar{'lonIDsDir'}/*>) {
+        my $now=time;
+        if (-l $fname) {
+            my $linkfname = readlink($fname);
+            if (-f $linkfname) {
+                if ($linkfname =~ m{^$perlvar{'lonIDsDir'}/[^/]+\.id$}) {
+                    my @data = stat($linkfname);
+                    my $mtime = $data[9];
+                    my $since=$now-$mtime;
+                    if ($since>$perlvar{'lonExpire'}) {
+                        if (unlink($linkfname)) {
+                            $cleaned++;
+                            &log($fh,"Unlinking $linkfname<br />");
+                            unlink($fname);
+                        }
+                    }
+                }
+            } else {
+               unlink($fname);
+            }
+        } elsif (-f $fname) {
+            my @data = stat($fname);
+            my $mtime = $data[9];
+            my $since=$now-$mtime;
+            if ($since>$perlvar{'lonExpire'}) {
+                if (unlink($fname)) {
+                    $cleaned++;
+                    &log($fh,"Unlinking $fname<br />");
+                }
+            } else {
+                $active++;
+            }
+        }
+    }
+    &log($fh,"<p>Cleaned up ".$cleaned." stale session token(s).</p>");
+    &log($fh,"<h3>$active open session(s)</h3>");
 }
 
-print $fh "</ol>\n";
+# -------------------------------------------------------- clean out balanceIDs
 
-# --------------------------------------------------------------------- Machine
+sub clean_balanceIDs {
+    my ($fh)=@_;
+    &log($fh,'<hr /><a name="balcookies" /><h2>Session Tokens</h2>');
+    my $cleaned=0;
+    my $active=0;
+    if (-d $perlvar{'lonBalanceDir'}) {
+        while (my $fname=<$perlvar{'lonBalanceDir'}/*.id>) {
+            my ($dev,$ino,$mode,$nlink,
+                $uid,$gid,$rdev,$size,
+                $atime,$mtime,$ctime,
+                $blksize,$blocks)=stat($fname);
+            my $now=time;
+            my $since=$now-$mtime;
+            if ($since>$perlvar{'lonExpire'}) {
+                $cleaned++;
+                &log($fh,"Unlinking $fname<br />");
+                unlink("$fname");
+            } else {
+                $active++;
+            }
+        }
+    }
+    &log($fh,"<p>Cleaned up ".$cleaned." stale balancer files</p>");
+    &log($fh,"<h3>$active unexpired balancer files</h3>");
+}
 
-print $fh '<hr><a name="machine"><h2>Machine Information</h2>';
-print $fh "<h3>loadavg</h3>";
+# ------------------------------------------------ clean out webDAV Session IDs
+sub clean_webDAV_sessionIDs {
+    my ($fh)=@_;
+    if ($perlvar{'lonRole'} eq 'library') {
+        &log($fh,'<hr /><a name="webdav" /><h2>WebDAV Session Tokens</h2>');
+        my $cleaned=0;
+        my $active=0;
+        my $now = time;
+        if (-d $perlvar{'lonDAVsessDir'}) {
+            while (my $fname=<$perlvar{'lonDAVsessDir'}/*>) {
+                my @stats = stat($fname);
+                my $since=$now-$stats[9];
+                if ($since>$perlvar{'lonExpire'}) {
+                    $cleaned++;
+                    &log($fh,"Unlinking $fname<br />");
+                    unlink("$fname");
+                } else {
+                    $active++;
+                }
+            }
+            &log($fh,"<p>Cleaned up ".$cleaned." stale webDAV session token(s).</p>");
+            &log($fh,"<h3>$active open webDAV session(s)</h3>");
+        }
+    }
+}
 
-open (LOADAVGH,"/proc/loadavg");
-$loadavg=<LOADAVGH>;
-close (LOADAVGH);
+# ------------------------------------------------------------ clean out ltiIDs
 
-print $fh "<tt>$loadavg</tt>";
+sub clean_ltiIDs {
+    my ($fh)=@_;
+    &log($fh,'<hr /><a name="ltisessions" /><h2>LTI Session Pointers</h2>');
+    my $cleaned=0;
+    my $active=0;
+    if (-d $perlvar{'ltiIDsDir'}) {
+        while (my $fname=<$perlvar{'ltiIDsDir'}/*>) {
+            my ($dev,$ino,$mode,$nlink,
+                $uid,$gid,$rdev,$size,
+                $atime,$mtime,$ctime,
+                $blksize,$blocks)=stat($fname);
+            my $now=time;
+            my $since=$now-$mtime;
+            if ($since>$perlvar{'lonExpire'}) {
+                $cleaned++;
+                &log($fh,"Unlinking $fname<br />");
+                unlink("$fname");
+            } else {
+                $active++;
+            }
+        }
+    }
+    &log($fh,"<p>Cleaned up ".$cleaned." old LTI session pointers.</p>");
+    &log($fh,"<h3>$active unexpired LTI session pointers</h3>");
+}
 
-@parts=split(/\s+/,$loadavg);
-if ($parts[1]>4.0) {
-    $errors++;
-} elsif ($parts[1]>2.0) {
-    $warnings++;
-} elsif ($parts[1]>1.0) {
-    $notices++;
-}
-
-print $fh "<h3>df</h3>";
-print $fh "<pre>";
-
-open (DFH,"df|");
-while ($line=<DFH>) { 
-   print $fh "$line"; 
-   @parts=split(/\s+/,$line);
-   $usage=$parts[4];
-   $usage=~s/\W//g;
-   if ($usage>90) { 
-      $warnings++;
-      $notices++; 
-   } elsif ($usage>80) {
-      $warnings++;
-   } elsif ($usage>60) {
-      $notices++;
-   }
-   if ($usage>95) { $warnings++; $warnings++; $simplestatus{'diskfull'}++; }
-}
-close (DFH);
-print $fh "</pre>";
-
-
-print $fh "<h3>ps</h3>";
-print $fh "<pre>";
-$psproc=0;
-
-open (PSH,"ps -aux|");
-while ($line=<PSH>) { 
-   print $fh "$line"; 
-   $psproc++;
+# ----------------------------------------------------------- clean out sockets
+sub clean_sockets {
+    my ($fh)=@_;
+    my $cleaned=0;
+    opendir(SOCKETS,$perlvar{'lonSockDir'});
+    while (my $fname=readdir(SOCKETS)) {
+	next if (-d $fname 
+		 || $fname=~/(mysqlsock|maximasock|rsock|\Q$perlvar{'lonSockDir'}\E)/);
+	$cleaned++;
+	&log($fh,"Unlinking $fname<br />");
+	unlink("/home/httpd/sockets/$fname");
+    }
+    &log($fh,"<p>Cleaned up ".$cleaned." stale sockets.</p>");
 }
-close (PSH);
-print $fh "</pre>";
 
-if ($psproc>200) { $notices++; }
-if ($psproc>250) { $notices++; }
 
-&errout($fh);
+# ----------------------------------------------------------------------- httpd
+sub check_httpd_logs {
+    my ($fh)=@_;
+    if (open(PIPE,"./lchttpdlogs|")) {
+        while (my $line=<PIPE>) {
+            &log($fh,$line);
+            if ($line=~/\[error\]/) { $notices++; }
+        }
+        close(PIPE);
+    }
+    &errout($fh);
+}
+
+# ---------------------------------------------------------------------- lonnet
 
-# --------------------------------------------------------------- clean out tmp
-print $fh '<hr><a name="tmp"><h2>Temporary Files</h2>';
-$cleaned=0;
-$old=0;
-while ($fname=<$perlvar{'lonDaemons'}/tmp/*>) {
-                          my ($dev,$ino,$mode,$nlink,
-                              $uid,$gid,$rdev,$size,
-                              $atime,$mtime,$ctime,
-                              $blksize,$blocks)=stat($fname);
-                          $now=time;
-                          $since=$now-$mtime;
-                          if ($since>$perlvar{'lonExpire'}) {
-                              $line='';
-                              if (open(PROBE,$fname)) {
-				  $line=<PROBE>;
-                                  close(PROBE);
-			      }
-			      unless ($line=~/^CHECKOUTTOKEN\&/) {
-                                 $cleaned++;
-                                 unlink("$fname");
-			      } else {
-				  if ($since>365*$perlvar{'lonExpire'}) {
-                                     $cleaned++;
-                                     unlink("$fname");
-				 } else { $old++; }
-                              }
-                          }
-    
+sub rotate_lonnet_logs {
+    my ($fh)=@_;
+    &log($fh,'<hr /><a name="lonnet" /><h2>lonnet</h2><h3>Temp Log</h3><pre>');
+    print "Checking logs.\n";
+    if (-e "$perlvar{'lonDaemons'}/logs/lonnet.log"){
+	open (DFH,"tail -n50 $perlvar{'lonDaemons'}/logs/lonnet.log|");
+	while (my $line=<DFH>) {
+	    &log($fh,&encode_entities($line,'<>&"'));
+	}
+	close (DFH);
+    }
+    &log($fh,"</pre><h3>Perm Log</h3><pre>");
+
+    if (-e "$perlvar{'lonDaemons'}/logs/lonnet.perm.log") {
+	open(DFH,"tail -n10 $perlvar{'lonDaemons'}/logs/lonnet.perm.log|");
+	while (my $line=<DFH>) {
+	    &log($fh,&encode_entities($line,'<>&"'));
+	}
+	close (DFH);
+    } else { &log($fh,"No perm log\n") }
+
+    my $fname="$perlvar{'lonDaemons'}/logs/lonnet.log";
+    &rotate_logfile($fname,$fh,'lonnet log');
+
+    &log($fh,"</pre>");
+    &errout($fh);
 }
-print $fh "Cleaned up ".$cleaned." files (".$old." old checkout tokens).";
 
-# ------------------------------------------------------------ clean out lonIDs
-print $fh '<hr><a name="tokens"><h2>Session Tokens</h2>';
-$cleaned=0;
-$active=0;
-while ($fname=<$perlvar{'lonIDsDir'}/*>) {
-                          my ($dev,$ino,$mode,$nlink,
-                              $uid,$gid,$rdev,$size,
-                              $atime,$mtime,$ctime,
-                              $blksize,$blocks)=stat($fname);
-                          $now=time;
-                          $since=$now-$mtime;
-                          if ($since>$perlvar{'lonExpire'}) {
-                              $cleaned++;
-                              print $fh "Unlinking $fname<br>";
-                              unlink("$fname");
-                          } else {
-                              $active++;
-                          }
-    
+sub rotate_other_logs {
+    my ($fh) = @_;
+    my %logs = (
+                  autoenroll          => 'Auto Enroll log',
+                  autocreate          => 'Create Course log',
+                  searchcat           => 'Search Cataloguing log',
+                  autoupdate          => 'Auto Update log',
+                  refreshcourseids_db => 'Refresh CourseIDs db log',
+               );
+    foreach my $item (keys(%logs)) {
+        my $fname=$perlvar{'lonDaemons'}.'/logs/'.$item.'.log';
+        &rotate_logfile($fname,$fh,$logs{$item});
+    }
+}
+
+# ----------------------------------------------------------------- Connections
+sub test_connections {
+    my ($fh)=@_;
+    &log($fh,'<hr /><a name="connections" /><h2>Connections</h2>');
+    print "Testing connections.\n";
+    &log($fh,"<table border='2'>");
+    my ($good,$bad)=(0,0);
+    my %hostname = &Apache::lonnet::all_hostnames();
+    foreach my $tryserver (sort(keys(%hostname))) {
+	print(".");
+	my $result;
+	my $answer=&Apache::lonnet::reply("ping",$tryserver);
+	if ($answer eq "$tryserver:$perlvar{'lonHostID'}") {
+	    $result="<b>ok</b>";
+	    $good++;
+	} else {
+	    $result=$answer;
+	    $warnings++;
+	    if ($answer eq 'con_lost') {
+		$bad++;
+		$warnings++;
+	    } else {
+		$good++; #self connection
+	    }
+	}
+	if ($answer =~ /con_lost/) { print(" $tryserver down\n"); }
+	&log($fh,"<tr><td>$tryserver</td><td>$result</td></tr>\n");
+    }
+    &log($fh,"</table>");
+    print "\n$good good, $bad bad connections\n";
+    &errout($fh);
 }
-print $fh "<p>Cleaned up ".$cleaned." stale session token(s).";
-print $fh "<h3>$active open session(s)</h3>";
 
-# ----------------------------------------------------------------------- httpd
 
-print $fh '<hr><a name="httpd"><h2>httpd</h2><h3>Access Log</h3><pre>';
+# ------------------------------------------------------------ Delayed messages
+sub check_delayed_msg {
+    my ($fh,$weightsref,$exclusionsref)=@_;
+    &log($fh,'<hr /><a name="delayed" /><h2>Delayed Messages</h2>');
+    print "Checking buffers.\n";
+    
+    &log($fh,'<h3>Scanning Permanent Log</h3>');
 
-open (DFH,"tail -n25 /etc/httpd/logs/access_log|");
-while ($line=<DFH>) { print $fh "$line" };
-close (DFH);
+    my $unsend=0;
+    my $ignored=0;
+
+    my %hostname = &Apache::lonnet::all_hostnames();
+    my $numhosts = scalar(keys(%hostname));
+    my $checkbackwards = 0;
+    my $checkfrom = 0;
+    my $checkexcluded = 0;
+    my (%bymachine,%weights,%exclusions,%serverhomes);
+    if (ref($weightsref) eq 'HASH') {
+        %weights = %{$weightsref};
+    }
+    if (ref($exclusionsref) eq 'HASH') {
+        %exclusions = %{$exclusionsref};
+        if (keys(%exclusions)) {
+            $checkexcluded = 1;
+            %serverhomes = &read_serverhomeIDs();
+        }
+    }
 
-print $fh "</pre><h3>Error Log</h3><pre>";
+#
+# For LON-CAPA 1.2.0 to 2.1.3 (release dates: 8/31/2004 and 3/31/2006) any
+# entry logged in lonnet.perm.log for completion of a delayed (critical)
+# transaction lacked the hostID for the remote node to which the command
+# to be completed was sent.
+#
+# Because of this, exclusion of items in lonnet.perm.log for nodes which are
+# no longer part of the cluster from adding to the overall "unsend" count
+# needs additional effort besides the changes made in loncron rev. 1.105.
+#
+# For "S" (completion) events logging in LON-CAPA 1.2.0 through 2.1.3 included
+# "LondTransaction=HASH(hexadecimal)->getClient() :$cmd, where the hexadecimal
+# is a memory location, and $cmd is the command sent to the remote node.
+#
+# Starting with 2.2.0 (released 8/21/2006) logging for "S" (completion) events
+# had sethost:$host_id:$cmd after LondTransaction=HASH(hexadecimal)->getClient()
+#
+# Starting with 2.4.1 (released 6/13/2007) logging for "S" replaced echoing the
+# getClient() call with the result of the Transaction->getClient() call itself
+# undef for completion of delivery of a delayed message.
+#
+# The net effect of these changes is that lonnet.perm.log is now accessed three
+# times: (a) oldest record is checked, if earlier than release date for 2.5.0
+# then (b) file is read backwards, with timestamp recorded for most recent
+# instance of logged "S" event for "update" command without "sethost:$host_id:"
+# then (c) file is read forward with records ignored which predate the timestamp
+# recorded in (b), if one was found.
+#
+# In (c), when calculating the unsend total, i.e., the difference between delayed
+# transactions ("D") and sent transactions ("S"), transactions are ignored if the
+# target node is no longer in the cluster, and also (for "update" commands), if
+# the target node is in the list of nodes excluded from the count, in the domain
+# configuration for this machine's default domain.  The idea here is to remove
+# delayed "update" commands for nodes for which inbound access to port 5663,
+# is blocked, but are still part of the LON-CAPA network, (i.e., they can still
+# replicate content from other nodes).
+#
 
-open (DFH,"tail -n25 /etc/httpd/logs/error_log|");
-while ($line=<DFH>) { 
-   print $fh "$line";
-   if ($line=~/\[error\]/) { $notices++; } 
-};
-close (DFH);
-print $fh "</pre>";
-&errout($fh);
+    my $dfh=IO::File->new("$perlvar{'lonDaemons'}/logs/lonnet.perm.log","r");
+    if (defined($dfh)) {
+        while (my $line=<$dfh>) {
+            my ($time,$sdf,$rest)=split(/:/,$line,3);
+            if ($time < 1541185772) {
+                $checkbackwards = 1;
+            }
+            last;
+        }
+        undef $dfh;
+    } 
 
+    if ($checkbackwards) {
+        if (tie *BW, 'File::ReadBackwards', "$perlvar{'lonDaemons'}/logs/lonnet.perm.log") {
+            while(my $line=<BW>) {
+                if ($line =~ /\QLondTransaction=HASH\E[^:]+:update:/) {
+                    ($checkfrom) = split(/:/,$line,2);
+                    last;
+                }
+            }
+            close(BW);
+        }
+    }
+    $dfh=IO::File->new("$perlvar{'lonDaemons'}/logs/lonnet.perm.log","r");
+    if (defined($dfh)) {
+        while (my $line=<$dfh>) {
+            my ($time,$sdf,$rest)=split(/:/,$line,3);
+            next unless (($sdf eq 'F') || ($sdf eq 'S') || ($sdf eq 'D'));
+            next if (($checkfrom) && ($time <= $checkfrom));
+            my ($dserv,$dcmd);
+            if ($sdf eq 'S') {
+                my ($serva,$cmda,$servb,$cmdb) = split(/:/,$rest);
+                if ($cmda eq 'sethost') {
+                    chomp($cmdb);
+                    $dcmd = $cmdb;
+                } else {
+                    $dcmd = $cmda;
+                }
+                if (($serva =~ /^LondTransaction/) || ($serva eq '')) {
+                    unless (($servb eq '') || ($servb =~ m{^/})) {
+                        $dserv = $servb;
+                    }
+                } else {
+                    $dserv = $serva;
+                }
+            } else {
+                ($dserv,$dcmd) = split(/:/,$rest);
+            }
+            if ($sdf eq 'F') {
+                my $local=localtime($time);
+                &log($fh,"<b>Failed: $time, $dserv, $dcmd</b><br />");
+                $warnings++;
+            }
+            next if ((($dserv eq '') || ($dcmd eq '')) && ($sdf ne 'F'));
+            if ($sdf eq 'S') {
+                if ($dcmd eq 'update') {
+                    if ($hostname{$dserv}) {
+                        if ($exclusions{$serverhomes{$hostname{$dserv}}}) {
+                            $ignored --;
+                        } else {
+                            $unsend --;
+                        }
+                    }
+                    if (exists($bymachine{$dserv})) {
+                        $bymachine{$dserv} --;
+                    } else {
+                        $bymachine{$dserv} = -1;
+                    }
+                } else {
+                    if ($hostname{$dserv}) {
+                        $unsend --;
+                    }
+                }
+            } elsif ($sdf eq 'D') {
+                if ($dcmd eq 'update') {
+                    if ($hostname{$dserv}) {
+                        if ($exclusions{$serverhomes{$hostname{$dserv}}}) {
+                            $ignored ++;
+                        } else {
+                            $unsend ++;
+                        }
+                    }
+                    if (exists($bymachine{$dserv})) {
+                        $bymachine{$dserv} ++;
+                    } else {
+                        $bymachine{$dserv} = 1;
+                    }
+                } else {
+                    if ($hostname{$dserv}) {
+                        $unsend ++;
+                    }
+                }
+            }
+        }
+        undef $dfh;
+        my $nodest = 0;
+        my $retired = 0;
+        my %active;
+        if (keys(%bymachine)) {
+            unless ($checkexcluded) {
+                %serverhomes = &read_serverhomeIDs();
+            }
+            foreach my $key (keys(%bymachine)) {
+                if ($bymachine{$key} > 0) {
+                    if ($hostname{$key}) {
+                        $active{$serverhomes{$hostname{$key}}} += $bymachine{$key};
+                    } else {
+                        $retired ++;
+                        $nodest += $bymachine{$key};
+                    }
+                }
+            }
+        }
+        if (keys(%active)) {
+            &log($fh,"<p>Unsend messages by node, active (undegraded) nodes in cluster</p>\n");
+            foreach my $key (sort(keys(%active))) {
+                &log($fh,&encode_entities("$key => $active{$key}",'<>&"')."\n");
+            }
+        }
+        &log($fh,"<p>Total unsend messages: <b>$unsend</b> for ".scalar(keys(%active))." active (undegraded) nodes in cluster.</p>\n");
+        if (keys(%exclusions) > 0) {
+            &log($fh,"<p>Total incomplete updates <b>$ignored</b> for ".scalar(keys(%exclusions))." degraded nodes in cluster.</p>\n");
+        }
+        if ($retired) {
+            &log($fh,"<p>Total unsent <b>$nodest</b> for $retired nodes no longer in cluster.</p>\n");
+        }
+        if ($unsend > 0) {
+            $warnings=$warnings+$weights{'U'}*$unsend;
+        }
+    }
 
-# ---------------------------------------------------------------------- lonsql
+    if ($unsend) { $simplestatus{'unsend'}=$unsend; }
+    &log($fh,"<h3>Outgoing Buffer</h3>\n<pre>");
+# list directory with delayed messages and remember offline servers
+    my %servers=();
+    open (DFH,"ls -lF $perlvar{'lonSockDir'}/delayed|");
+    while (my $line=<DFH>) {
+        my ($server)=($line=~/\.(\w+)$/);
+        if ($server) { $servers{$server}=1; }
+	&log($fh,&encode_entities($line,'<>&"'));
+    }
+    &log($fh,"</pre>\n");
+    close (DFH);
+# pong to all servers that have delayed messages
+# this will trigger a reverse connection, which should flush the buffers
+    foreach my $tryserver (sort(keys(%servers))) {
+        if ($hostname{$tryserver} || !$numhosts) {
+            my $answer;
+            eval {
+                local $SIG{ ALRM } = sub { die "TIMEOUT" };
+                alarm(20);
+                $answer = &Apache::lonnet::reply("pong",$tryserver);
+                alarm(0);
+            };
+            if ($@ && $@ =~ m/TIMEOUT/) {
+                &log($fh,"Attempted pong to $tryserver timed out<br />");
+                print "Time out while contacting: $tryserver for pong.\n";
+            } else {
+                &log($fh,"Pong to $tryserver: $answer<br />");
+            }
+        } else {
+            &log($fh,"$tryserver has delayed messages, but is not part of the cluster -- skipping 'Pong'.<br />");
+        }
+    }
+}
 
-&checkon_daemon($fh,'lonsql',200000);
+sub finish_logging {
+    my ($fh,$weightsref)=@_;
+    my %weights;
+    if (ref($weightsref) eq 'HASH') {
+        %weights = %{$weightsref};
+    }
+    &log($fh,"<a name='errcount' />\n");
+    $totalcount=($weights{'N'}*$notices)+($weights{'W'}*$warnings)+($weights{'E'}*$errors);
+    &errout($fh);
+    &log($fh,"<h1>Total Error Count: $totalcount</h1>");
+    my $now=time;
+    my $date=localtime($now);
+    &log($fh,"<hr />$date ($now)</body></html>\n");
+    print "lon-status webpage updated.\n";
+    $fh->close();
+
+    if ($errors) { $simplestatus{'errors'}=$errors; }
+    if ($warnings) { $simplestatus{'warnings'}=$warnings; }
+    if ($notices) { $simplestatus{'notices'}=$notices; }
+    $simplestatus{'time'}=time;
+}
 
-# ------------------------------------------------------------------------ lond
+sub log_simplestatus {
+    rename("$statusdir/newstatus.html","$statusdir/index.html");
+    
+    my $sfh=IO::File->new(">$statusdir/loncron_simple.txt");
+    if (defined($sfh)) {
+        foreach my $key (keys(%simplestatus)) {
+            print $sfh $key.'='.$simplestatus{$key}.'&';
+        }
+        print $sfh "\n";
+        $sfh->close();
+    }
+}
 
-&checkon_daemon($fh,'lond',40000,1);
+sub write_loncaparevs {
+    print "Retrieving LON-CAPA version information.\n";
+    my %hostname = &Apache::lonnet::all_hostnames();
+    my $output;
+    foreach my $id (sort(keys(%hostname))) {
+        if ($id ne '') {
+            my $loncaparev;
+            eval {
+                local $SIG{ ALRM } = sub { die "TIMEOUT" };
+                alarm(10);
+                $loncaparev =
+                    &Apache::lonnet::get_server_loncaparev('',$id,1,'loncron');
+                alarm(0);
+            };
+            if ($@ && $@ =~ m/TIMEOUT/) {
+                print "Time out while contacting lonHost: $id for version.\n";   
+            }
+            if ($loncaparev =~ /^[\w.\-]+$/) {
+                $output .= $id.':'.$loncaparev."\n";
+            }
+        }
+    }
+    if ($output) {
+        if (open(my $fh,">$perlvar{'lonTabDir'}/loncaparevs.tab")) {
+            print $fh $output;
+            close($fh);
+            &Apache::lonnet::load_loncaparevs();
+        }
+    }
+    return;
+}
 
-# ------------------------------------------------------------------------ lonc
+sub write_serverhomeIDs {
+    print "Retrieving LON-CAPA lonHostID information.\n";
+    my %name_to_host = &Apache::lonnet::all_names();
+    my $output;
+    foreach my $name (sort(keys(%name_to_host))) {
+        if ($name ne '') {
+            if (ref($name_to_host{$name}) eq 'ARRAY') {
+                my $serverhomeID;
+                eval {
+                    local $SIG{ ALRM } = sub { die "TIMEOUT" };
+                    alarm(10);
+                    $serverhomeID =
+                        &Apache::lonnet::get_server_homeID($name,1,'loncron');
+                    alarm(0);
+                };
+                if ($@ && $@ =~ m/TIMEOUT/) {
+                    print "Time out while contacting server: $name\n"; 
+                }
+                if ($serverhomeID ne '') {
+                    $output .= $name.':'.$serverhomeID."\n";
+                } else {
+                    $output .= $name.':'.$name_to_host{$name}->[0]."\n";
+                }
+            }
+        }
+    }
+    if ($output) {
+        if (open(my $fh,">$perlvar{'lonTabDir'}/serverhomeIDs.tab")) {
+            print $fh $output;
+            close($fh);
+            &Apache::lonnet::load_serverhomeIDs();
+        }
+    }
+    return;
+}
 
-&checkon_daemon($fh,'lonc',40000,1);
+sub write_checksums {
+    my $distro = &LONCAPA::distro();
+    if ($distro) {
+        print "Retrieving file version and checksumming.\n";
+        my $numchksums = 0;
+        my ($chksumsref,$versionsref) =
+            &LONCAPA::Checksumming::get_checksums($distro,$perlvar{'lonDaemons'},
+                                                  $perlvar{'lonLib'},
+                                                  $perlvar{'lonIncludes'},
+                                                  $perlvar{'lonTabDir'});
+        if (ref($chksumsref) eq 'HASH') {
+            $numchksums = scalar(keys(%{$chksumsref}));
+        }
+        print "File version retrieved and checksumming completed for $numchksums files.\n";
+    } else {
+        print "File version retrieval and checksumming skipped - could not determine Linux distro.\n"; 
+    }
+    return;
+}
 
-# -------------------------------------------------------------------- lonhttpd
+sub write_hostips {
+    my $lontabdir = $perlvar{'lonTabDir'};
+    my $defdom = $perlvar{'lonDefDomain'};
+    my $lonhost = $perlvar{'lonHostID'};
+    my $newfile = "$lontabdir/currhostips.tab";
+    my $oldfile = "$lontabdir/prevhostips.tab";
+    my (%prevhosts,%currhosts,%ipchange);
+    if ((-e $newfile) && (-s $newfile)) {
+        move($newfile,$oldfile);
+        chmod(0644,$oldfile);
+        if (open(my $fh,'<',$oldfile)) {
+            while (my $line=<$fh>) {
+                chomp($line);
+                if ($line =~ /^([^:]+):([\d.]+)$/) {
+                    $prevhosts{$1} = $2;
+                }
+            }
+            close($fh);
+        }
+    }
+    my ($ip_info,$cached) =
+        &Apache::lonnet::is_cached_new('iphost','iphost');
+    if (!$cached) {
+        &Apache::lonnet::get_iphost();
+        ($ip_info,$cached) =
+        &Apache::lonnet::is_cached_new('iphost','iphost');
+    }
+    if (ref($ip_info) eq 'ARRAY') {
+        %currhosts = %{$ip_info->[1]};
+        if (open(my $fh,'>',$newfile)) {
+            foreach my $key (keys(%currhosts)) {
+                print $fh "$key:$currhosts{$key}\n";
+            }
+            close($fh);
+            chmod(0644,$newfile);
+        }
+    }
+    if (keys(%prevhosts) && keys(%currhosts)) {
+        foreach my $key (keys(%prevhosts)) {
+            unless ($currhosts{$key} eq $prevhosts{$key}) {
+                $ipchange{$key} = $prevhosts{$key}.' | '.$currhosts{$key};
+            }
+        }
+        foreach my $key (keys(%currhosts)) {
+            unless ($currhosts{$key} eq $prevhosts{$key}) {
+                $ipchange{$key} = $prevhosts{$key}.' | '.$currhosts{$key};
+            }
+        }
+    }
+    if (&Apache::lonnet::domain($defdom,'primary') eq $lonhost) {
+        if (keys(%ipchange)) {
+            if (open(my $fh,'>>',$perlvar{'lonDaemons'}.'/logs/hostip.log')) {
+               print $fh "********************\n".localtime(time).' Changes --'."\n".
+                         "| Hostname | Previous IP | New IP |\n".
+                         " --------------------------------- \n";
+               foreach my $hostname (sort(keys(%ipchange))) {
+                    print $fh "| $hostname | $ipchange{$hostname} |\n";
+                }
+                print $fh "\n*******************\n\n";
+                close($fh);
+            }
+            my $emailto = &Apache::loncommon::build_recipient_list(undef,
+                                   'hostipmail',$defdom);
+            if ($emailto) {
+                my $subject = "LON-CAPA Hostname to IP change ($perlvar{'lonHostID'})";
+                my $chgmail = "To: $emailto\n".
+                              "Subject: $subject\n".
+                              "Content-type: text/plain\; charset=UTF-8\n".
+                              "MIME-Version: 1.0\n\n".
+                              "Host/IP changes\n".
+                              " \n".
+                              "| Hostname | Previous IP | New IP |\n".
+                              " --------------------------------- \n";
+                foreach my $hostname (sort(keys(%ipchange))) {
+                    $chgmail .= "| $hostname | $ipchange{$hostname} |\n";
+                }
+                $chgmail .= "\n\n";
+                if (open(my $mailh, "|/usr/lib/sendmail -oi -t -odb")) {
+                    print $mailh $chgmail;
+                    close($mailh);
+                    print "Sending mail notification of hostname/IP changes.\n";
+                }
+            }
+        }
+    }
+    return;
+}
 
-&checkon_daemon($fh,'lonhttpd',40000);
+sub clean_nosslverify {
+    my ($fh) = @_;
+    my %unlinked;
+    if (-d "$perlvar{'lonSockDir'}/nosslverify") {
+        if (opendir(my $dh,"$perlvar{'lonSockDir'}/nosslverify")) {
+            while (my $fname=readdir($dh)) {
+                next if ($fname =~ /^\.+$/);
+                if (unlink("/home/httpd/sockets/nosslverify/$fname")) {
+                    &log($fh,"Unlinking $fname<br />");
+                    $unlinked{$fname} = 1;
+                }
+            }
+            closedir($dh);
+        }
+    }
+    &log($fh,"<p>Removed ".scalar(keys(%unlinked))." nosslverify clients</p>");
+    return %unlinked;
+}
+sub clean_lonc_childpids {
+    my $childpiddir = "$perlvar{'lonDocRoot'}/lon-status/loncchld";
+    if (-d $childpiddir) {
+        if (opendir(my $dh,$childpiddir)) {
+            while (my $fname=readdir($dh)) {
+                next if ($fname =~ /^\.+$/);
+                unlink("$childpiddir/$fname");
+            }
+            closedir($dh);
+        }
+    }
+}
 
-# ---------------------------------------------------------------------- lonnet
+sub write_connection_config {
+    my ($domconf,%connectssl,%changes);
+    $domconf = &get_domain_config();
+    if (ref($domconf) eq 'HASH') {
+        if (ref($domconf->{'ssl'}) eq 'HASH') {
+            foreach my $connect ('connto','connfrom') {
+                if (ref($domconf->{'ssl'}->{$connect}) eq 'HASH') {
+                    my ($sslreq,$sslnoreq,$currsetting);
+                    my %contypes;
+                    foreach my $type ('dom','intdom','other') {
+                        $connectssl{$connect.'_'.$type} = $domconf->{'ssl'}->{$connect}->{$type};
+                    }
+                }
+            }
+        }
+        if (keys(%connectssl)) {
+            my %currconf; 
+            if (open(my $fh,'<',"$perlvar{'lonTabDir'}/connectionrules.tab")) {
+                while (my $line = <$fh>) {
+                    chomp($line);
+                    my ($name,$value) = split(/=/,$line);
+                    if ($value =~ /^(?:no|yes|req)$/) {
+                        if ($name =~ /^conn(to|from)_(dom|intdom|other)$/) {
+                            $currconf{$name} = $value;
+                        }
+                    }
+                }
+                close($fh);
+            }
+            if (open(my $fh,'>',"$perlvar{'lonTabDir'}/connectionrules.tab")) {
+                my $count = 0;
+                foreach my $key (sort(keys(%connectssl))) { 
+                    print $fh "$key=$connectssl{$key}\n";
+                    if (exists($currconf{$key})) {
+                        unless ($currconf{$key} eq $connectssl{$key}) {
+                            $changes{$key} = 1;
+                        }
+                    } else {
+                        $changes{$key} = 1;
+                    }
+                    $count ++;
+                }
+                close($fh);
+                print "Completed writing SSL options for lonc/lond for $count items.\n";
+            }
+        } else {
+            print "Writing of SSL options skipped - no connection rules in domain configuration.\n";
+        }
+    } else {
+        print "Retrieval of SSL options for lonc/lond skipped - no configuration data available for domain.\n";
+    }
+    return %changes;
+}
 
-print $fh '<hr><a name="lonnet"><h2>lonnet</h2><h3>Temp Log</h3><pre>';
-print "checking logs\n";
-if (-e "$perlvar{'lonDaemons'}/logs/lonnet.log"){
-open (DFH,"tail -n50 $perlvar{'lonDaemons'}/logs/lonnet.log|");
-while ($line=<DFH>) { 
-    print $fh "$line";
-};
-close (DFH);
-}
-print $fh "</pre><h3>Perm Log</h3><pre>";
-
-if (-e "$perlvar{'lonDaemons'}/logs/lonnet.perm.log") {
-    open(DFH,"tail -n10 $perlvar{'lonDaemons'}/logs/lonnet.perm.log|");
-while ($line=<DFH>) { 
-   print $fh "$line";
-};
-close (DFH);
-} else { print $fh "No perm log\n" }
-
-$fname="$perlvar{'lonDaemons'}/logs/lonnet.log";
-
-                          my ($dev,$ino,$mode,$nlink,
-                              $uid,$gid,$rdev,$size,
-                              $atime,$mtime,$ctime,
-                              $blksize,$blocks)=stat($fname);
-
-if ($size>40000) {
-    print $fh "Rotating logs ...<p>";
-    rename("$fname.2","$fname.3");
-    rename("$fname.1","$fname.2");
-    rename("$fname","$fname.1");
+sub get_domain_config {
+    my ($dom,$primlibserv,$isprimary,$url,%confhash);
+    $dom = $perlvar{'lonDefDomain'};
+    $primlibserv = &Apache::lonnet::domain($dom,'primary');
+    if ($primlibserv eq $perlvar{'lonHostID'}) {
+        $isprimary = 1;
+    } elsif ($primlibserv ne '') {
+        my $protocol = $Apache::lonnet::protocol{$primlibserv};
+        my $hostname = &Apache::lonnet::hostname($primlibserv);
+        unless ($protocol eq 'https') {
+            $protocol = 'http';
+        }
+        $url = $protocol.'://'.$hostname.'/cgi-bin/listdomconfig.pl?primary='.$primlibserv.'&format=raw';
+    }
+    if ($isprimary) {
+        my $lonusersdir = $perlvar{'lonUsersDir'};
+        my $fname = $lonusersdir.'/'.$dom.'/configuration.db';
+        if (-e $fname) {
+            my $dbref=&LONCAPA::locking_hash_tie($fname,&GDBM_READER());
+            if (ref($dbref) eq 'HASH') {
+                foreach my $key (sort(keys(%{$dbref}))) {
+                    my $value = $dbref->{$key};
+                    if ($value =~ s/^__FROZEN__//) {
+                        $value = thaw(&LONCAPA::unescape($value));
+                    } else {
+                        $value = &LONCAPA::unescape($value);
+                    }
+                    $confhash{$key} = $value;
+                }
+                &LONCAPA::locking_hash_untie($dbref);
+            }
+        }
+    } else {
+        my $request=new HTTP::Request('GET',$url);
+        my $response=&LONCAPA::LWPReq::makerequest($primlibserv,$request,'',\%perlvar,5);
+        unless ($response->is_error()) {
+            my $content = $response->content;
+            if ($content) {
+                my @pairs=split(/\&/,$content);
+                foreach my $item (@pairs) {
+                    my ($key,$value)=split(/=/,$item,2);
+                    my $what = &LONCAPA::unescape($key);
+                    if ($value =~ s/^__FROZEN__//) {
+                        $value = thaw(&LONCAPA::unescape($value));
+                    } else {
+                        $value = &LONCAPA::unescape($value);
+                    }
+                    $confhash{$what}=$value;
+                }
+            }
+        }
+    }
+    return \%confhash;
 }
 
-print $fh "</pre>";
-&errout($fh);
-# ----------------------------------------------------------------- Connections
+sub write_hosttypes {
+    my %intdom = &Apache::lonnet::all_host_intdom();
+    my %hostdom = &Apache::lonnet::all_host_domain();
+    my $dom = $hostdom{$perlvar{'lonHostID'}};
+    my $internetdom = $intdom{$perlvar{'lonHostID'}};
+    my %changes;
+    if (($dom ne '') && ($internetdom ne '')) {
+        if (keys(%hostdom)) {
+            my %currhosttypes;
+            if (open(my $fh,'<',"$perlvar{'lonTabDir'}/hosttypes.tab")) {
+                while (my $line = <$fh>) {
+                    chomp($line);
+                    my ($name,$value) = split(/:/,$line);
+                    if (($name ne '') && ($value =~ /^(dom|intdom|other)$/)) {
+                        $currhosttypes{$name} = $value;
+                    }
+                }
+                close($fh);
+            }
+            if (open(my $fh,'>',"$perlvar{'lonTabDir'}/hosttypes.tab")) {
+                my $count = 0;
+                foreach my $lonid (sort(keys(%hostdom))) {
+                    my $type = 'other';
+                    if ($hostdom{$lonid} eq $dom) {
+                        $type = 'dom';
+                    } elsif ($intdom{$lonid} eq $internetdom) {
+                        $type = 'intdom';
+                    }
+                    print $fh "$lonid:$type\n";
+                    if (exists($currhosttypes{$lonid})) {
+                        if ($type ne $currhosttypes{$lonid}) {
+                            $changes{$lonid} = 1;
+                        }
+                    } else {
+                        $changes{$lonid} = 1;
+                    }
+                    $count ++;
+                }
+                close($fh);
+                print "Completed writing host type data for $count hosts.\n";
+            }
+        } else {
+            print "Writing of host types skipped - no hosts found.\n";
+        }
+    } else {
+        print "Writing of host types skipped - could not determine this host's LON-CAPA domain or 'internet' domain.\n";
+    }
+    return %changes;
+}
 
-print $fh '<hr><a name="connections"><h2>Connections</h2>';
-print "testing connections\n";
-print $fh "<table border=2>";
-foreach $tryserver (sort(keys(%hostname))) {
-    print(".");
-    $answer=reply("pong",$tryserver);
-    if ($answer eq "$tryserver:$perlvar{'lonHostID'}") {
-	$result="<b>ok</b>";
+sub update_revocation_list {
+    my ($result,$changed) = &Apache::lonnet::fetch_crl_pemfile();
+    if ($result eq 'ok') {
+        print "Certificate Revocation List (from CA) updated.\n";
     } else {
-        $result=$answer;
-        $warnings++;
-        if ($answer eq 'con_lost') { $warnings++; }
+        print "Certificate Revocation List from (CA) not updated.\n";
     }
-    if ($answer =~ /con_lost/) { print(" $tryserver down\n"); }
-    print $fh "<tr><td>$tryserver</td><td>$result</td></tr>\n";
+    return $changed;
+}
 
+sub reset_nosslverify_pids {
+    my ($fh,%sslrem) = @_;
+    &checkon_daemon($fh,'lond',40000,'USR2');
+    my $loncpidfile="$perlvar{'lonDaemons'}/logs/lonc.pid";
+    my $loncppid;
+    if ((-e $loncpidfile) && (open(my $pfh,'<',$loncpidfile))) {
+        $loncppid=<$pfh>;
+        chomp($loncppid);
+        close($pfh);
+        if ($loncppid =~ /^\d+$/) {
+            my %pids_by_host;
+            my $docdir = $perlvar{'lonDocRoot'};
+            if (-d "$docdir/lon-status/loncchld") {
+                if (opendir(my $dh,"$docdir/lon-status/loncchld")) {
+                    while (my $file = readdir($dh)) {
+                        next if ($file =~ /^\./);
+                        if (open(my $fh,'<',"$docdir/lon-status/loncchld/$file")) {
+                            my $record = <$fh>;
+                            chomp($record);
+                            close($fh);
+                            my ($remotehost,$authmode) = split(/:/,$record);
+                            $pids_by_host{$remotehost}{$authmode}{$file} = 1;
+                        }
+                    }
+                    closedir($dh);
+                    if (keys(%pids_by_host)) {
+                        foreach my $host (keys(%pids_by_host)) {
+                            if ($sslrem{$host}) {
+                                if (ref($pids_by_host{$host}) eq 'HASH') {
+                                    if (ref($pids_by_host{$host}{'insecure'}) eq 'HASH') {
+                                        if (keys(%{$pids_by_host{$host}{'insecure'}})) {
+                                            foreach my $pid (keys(%{$pids_by_host{$host}{'insecure'}})) {
+                                                if (open(PIPE,"ps -o ppid= -p $pid |")) {
+                                                    my $ppid = <PIPE>;
+                                                    chomp($ppid);
+                                                    close(PIPE);
+                                                    $ppid =~ s/(^\s+|\s+$)//g;
+                                                    if (($ppid == $loncppid) && (kill 0 => $pid)) {
+                                                        kill QUIT => $pid;
+                                                    }
+                                                }
+                                            }
+                                        }
+                                    }
+                                }
+                            }
+                        }
+                    }
+                }
+            }
+        }
+    }
+    return;
 }
-print $fh "</table>";
 
-&errout($fh);
-# ------------------------------------------------------------ Delayed messages
+sub get_permcount_settings {
+    my ($domconf) = @_;
+    my ($defaults,$names) = &Apache::loncommon::lon_status_items();
+    my (%weights,$threshold,$sysmail,$reportstatus,%exclusions);
+    foreach my $type ('E','W','N','U') {
+        $weights{$type} = $defaults->{$type};
+    }
+    $threshold = $defaults->{'threshold'};
+    $sysmail = $defaults->{'sysmail'};
+    $reportstatus = 1;
+    if (ref($domconf) eq 'HASH') {
+        if (ref($domconf->{'contacts'}) eq 'HASH') {
+            if ($domconf->{'contacts'}{'reportstatus'} == 0) {
+                $reportstatus = 0;
+            }
+            if (ref($domconf->{'contacts'}{'lonstatus'}) eq 'HASH') {
+                if (ref($domconf->{'contacts'}{'lonstatus'}{weights}) eq 'HASH') {
+                    foreach my $type ('E','W','N','U') {
+                        if (exists($domconf->{'contacts'}{'lonstatus'}{weights}{$type})) {
+                            $weights{$type} = $domconf->{'contacts'}{'lonstatus'}{weights}{$type};
+                        }
+                    }
+                }
+                if (ref($domconf->{'contacts'}{'lonstatus'}{'excluded'}) eq 'ARRAY') {
+                    my @excluded = @{$domconf->{'contacts'}{'lonstatus'}{'excluded'}};
+                    if (@excluded) {
+                        map { $exclusions{$_} = 1; } @excluded;
+                    }
+                }
+                if (exists($domconf->{'contacts'}{'lonstatus'}{'threshold'})) {
+                    $threshold = $domconf->{'contacts'}{'lonstatus'}{'threshold'};
+                }
+                if (exists($domconf->{'contacts'}{'lonstatus'}{'sysmail'})) {
+                    $sysmail = $domconf->{'contacts'}{'lonstatus'}{'sysmail'};
+                }
+            }
+        }
+    }
+    return ($threshold,$sysmail,$reportstatus,\%weights,\%exclusions);
+}
 
-print $fh '<hr><a name="delayed"><h2>Delayed Messages</h2>';
-print "checking buffers\n";
+sub read_serverhomeIDs {
+    my %server;
+    if (-e "$perlvar{'lonTabDir'}/serverhomeIDs.tab") {
+        if (open(my $fh,'<',"$perlvar{'lonTabDir'}/serverhomeIDs.tab")) {
+            while (<$fh>) {
+                my($host,$id) = split(/:/);
+                chomp($id);
+                $server{$host} = $id;
+            }
+            close($fh);
+        }
+    }
+    return %server;
+}
 
-print $fh '<h3>Scanning Permanent Log</h3>';
+sub check_bash_settings {
+    my $distro = &LONCAPA::distro();
+    my ($check_bracketed_paste,$bracketed_warning);
+    if ($distro  =~ /^debian(\d+)$/) {
+        if ($1 >= 12) {
+            $check_bracketed_paste = 1;
+        }
+    } elsif ($distro =~ /^ubuntu(\d+)$/) {
+        if ($1 >= 22) {
+            $check_bracketed_paste = 1;
+        }
+    } elsif ($distro =~ /^(?:redhat|oracle|alma|rocky|centos-stream)(\d+)$/) {
+        if ($1 >= 9) {
+            $check_bracketed_paste = 1;
+        }
+    } elsif ($distro =~ /^fedora(\d+)/) {
+        if ($1 >= 34) {
+            $check_bracketed_paste = 1;
+        }
+    }
+    if ($check_bracketed_paste) {
+        if (open(PIPE,"bind -V 2>&1 | grep enable-bracketed-paste |")) {
+            my $info = <PIPE>;
+            chomp($info);
+            my ($bracketed) = ($info =~ /^\Qenable-bracketed-paste\E\s+is\s+set\s+to\s+\W(on|off)\W$/);
+            close(PIPE);
+            if ($bracketed eq 'on') {
+                $bracketed_warning = 1;
+            }
+        } else {
+            print "Unable to check if bracketed paste is set to off for www user's shell\n"; 
+        }
+    }
+    return ($bracketed_warning,$check_bracketed_paste);
+}
 
-$unsend=0;
-{
-    my $dfh=IO::File->new("$perlvar{'lonDaemons'}/logs/lonnet.perm.log");
-    while ($line=<$dfh>) {
-	($time,$sdf,$dserv,$dcmd)=split(/:/,$line);
-        if ($sdf eq 'F') { 
-	    $local=localtime($time);
-            print $fh "<b>Failed: $time, $dserv, $dcmd</b><br>";
-            $warnings++;
-        }
-        if ($sdf eq 'S') { $unsend--; }
-        if ($sdf eq 'D') { $unsend++; }
-    }
-}
-print $fh "Total unsend messages: <b>$unsend</b><p>\n";
-$warnings=$warnings+5*$unsend;
-
-if ($unsend) { $simplestatus{'unsend'}=$unsend; }
-print $fh "<h3>Outgoing Buffer</h3>";
-
-open (DFH,"ls -lF $perlvar{'lonSockDir'}/delayed|");
-while ($line=<DFH>) { 
-    print $fh "$line<br>";
-};
-close (DFH);
-
-# ------------------------------------------------------------------------- End
-print $fh "<a name=errcount>\n";
-$totalcount=$notices+4*$warnings+100*$errors;
-&errout($fh);
-print $fh "<h1>Total Error Count: $totalcount</h1>";
-$now=time;
-$date=localtime($now);
-print $fh "<hr>$date ($now)</body></html>\n";
-print "lon-status webpage updated\n";
-$fh->close();
-}
-if ($errors) { $simplestatus{'errors'}=$errors; }
-if ($warnings) { $simplestatus{'warnings'}=$warnings; }
-if ($notices) { $simplestatus{'notices'}=$notices; }
-$simplestatus{'time'}=time;
-
-rename ("$statusdir/newstatus.html","$statusdir/index.html");
-{
-my $sfh=IO::File->new(">$statusdir/loncron_simple.txt");
-foreach (keys %simplestatus) {
-    print $sfh $_.'='.$simplestatus{$_}.'&';
-}
-print $sfh "\n";
-$sfh->close();
-}
-if ($totalcount>200) {
-   print "sending mail\n";
-   $emailto="$perlvar{'lonAdmEMail'}";
-   if ($totalcount>1000) {
-      $emailto.=",$perlvar{'lonSysEMail'}";
-   }
-   $subj="LON: $perlvar{'lonHostID'} E:$errors W:$warnings N:$notices"; 
-   system(
- "metasend -b -t $emailto -s '$subj' -f $statusdir/index.html -m text/html");
+sub set_bracketed_paste_off {
+    my $bash_www_cnf = '/home/www/.inputrc';
+    my $result;
+    if (!-e $bash_www_cnf) {
+        system("touch $bash_www_cnf");
+        if (open(my $cfh,'>',$bash_www_cnf)) {
+            print $cfh <<'END';
+$if R
+    set enable-bracketed-paste off
+$endif
+
+$if maxima
+    set enable-bracketed-paste off
+$endif
+END
+            close($cfh);
+            $result = "Updated $bash_www_cnf so enable-bracketed-paste is off for R bash shell";
+        } else {
+            $result = "Could not open $bash_www_cnf to add 'set enable-bracketed-paste to off'";
+        }
+        my $wwwuid = getpwnam('www');
+        my $wwwgid = getgrnam('www');
+        if ($wwwuid!=$<) {
+            chown($wwwuid,$wwwgid,$bash_www_cnf);
+        }
+    } else {
+        my (%bracketed_paste_on,%bracketed_paste_off,@preserve,$condition);
+        $condition = '';
+        if (open(my $cfh,'<',$bash_www_cnf)) {
+            while (my $line=<$cfh>) {
+                chomp($line);
+                if ($line =~ /^\$if\s+(\w+)\s*$/) {
+                    if ($1 eq 'R') {
+                        $condition = 'r';
+                    } elsif ($1 eq 'maxima') {
+                        $condition = 'maxima';
+                    } else {
+                        $condition = 'other';
+                    }
+                } elsif ($line =~ /^\$endif\s*$/) {
+                    $condition = '';
+                }
+                if ($line =~ /^\s*set\s+enable\-bracketed\-paste\s+(off|on)\s*$/) {
+                    if ($1 eq 'off') {
+                        if ($condition ne '') {
+                            $bracketed_paste_off{$condition} = 1;
+                        } else {
+                            $bracketed_paste_off{all} = 1;
+                        }
+                        push(@preserve,$line);
+                    } else {
+                        if ($condition ne '') {
+                            $bracketed_paste_on{$condition} = 1;
+                            if (($condition eq 'r') || ($condition eq 'maxima')) {
+                                push(@preserve,'    set enable-bracketed-paste off');
+                            } else {
+                                push(@preserve,$line);
+                            }
+                        } else {
+                            $bracketed_paste_on{all} = 1;
+                            push(@preserve,$line);
+                        }
+                    }
+                } else {
+                    push(@preserve,$line);
+                }
+            }
+            close($cfh);
+        } else {
+            $result = "Could not open $bash_www_cnf to check if a value is included for 'enable-bracketed-paste'.";
+        }
+        if (($bracketed_paste_on{r} || $bracketed_paste_on{maxima}) ||
+            (!exists($bracketed_paste_off{r}) && !exists($bracketed_paste_on{r}) &&
+             !exists($bracketed_paste_off{maxima}) && !exists($bracketed_paste_on{maxima}))) {
+            if (open(my $cfh,'>',$bash_www_cnf)) {
+                if (@preserve) {
+                    foreach my $entry (@preserve) {
+                        print $cfh "$entry\n";
+                    }
+                    if (!exists($bracketed_paste_off{r}) && !exists($bracketed_paste_on{r})) {
+print $cfh <<'END';
+$if R
+    set enable-bracketed-paste off
+$endif
+END
+                    }
+                    if (!exists($bracketed_paste_off{r}) && !exists($bracketed_paste_on{r})) {
+print $cfh <<'END';
+$if maxima
+    set enable-bracketed-paste off
+$endif
+END
+                    }
+                } else {
+print $cfh <<'END';
+$if R
+    set enable-bracketed-paste off
+$endif
+
+$if maxima
+    set enable-bracketed-paste off
+$endif
+END
+                }
+                close($cfh);
+                $result = "Updated $bash_www_cnf";
+            } else {
+                $result = "Could not open $bash_www_cnf to add 'set enable-bracketed-paste to off'";
+            }
+        } else {
+            $result = "No action needed; $bash_www_cnf already includes 'set enable-bracketed-paste to off'";
+        }
+    }
+    return $result;
+}
+
+sub send_mail {
+    my ($sysmail,$reportstatus) = @_;
+    my $defdom = $perlvar{'lonDefDomain'};
+    my $origmail = $perlvar{'lonAdmEMail'};
+    my $emailto = &Apache::loncommon::build_recipient_list(undef,
+                                   'lonstatusmail',$defdom,$origmail);
+    if (($totalcount>$sysmail) && ($reportstatus)) {
+	$emailto.=",$perlvar{'lonSysEMail'}";
+    }
+    my $from;
+    my $hostname=`/bin/hostname`;
+    chop($hostname);
+    $hostname=~s/[^\w\.]//g;
+    if ($hostname) {
+        $from = 'www@'.$hostname;
+    }
+    my $subj="LON: $perlvar{'lonHostID'} E:$errors W:$warnings N:$notices";
+    my $loncronmail = "To: $emailto\n".
+                      "From: $from\n".
+                      "Subject: ".$subj."\n".
+                      "Content-type: text/html\; charset=UTF-8\n".
+                      "MIME-Version: 1.0\n\n";
+    if (open(my $fh,"<$statusdir/index.html")) {
+        while (<$fh>) {
+            $loncronmail .= $_;
+        }
+        close($fh);
+    } else {
+        $loncronmail .= "Failed to read from http://$hostname/lon-status/index.html\n";
+    }
+    $loncronmail .= "\n\n";
+    if (open(my $mailh, "|/usr/lib/sendmail -oi -t -odb")) {
+        print $mailh $loncronmail;
+        close($mailh);
+        print "Sending mail.\n";
+    } else {
+        print "Sending mail failed.\n";
+    }
 }
-1;
 
+sub usage {
+    print(<<USAGE);
+loncron - housekeeping program that checks up on various parts of LON-CAPA
+
+Options:
+   --help     Display 
+   --noemail  Do not send the status email
+   --justcheckconnections  Only check the current status of the lonc/d
+                                connections, do not send emails do not
+                                check if the daemons are running, do not
+                                generate lon-status
+   --justcheckdaemons      Only check that all of the Lon-CAPA daemons are
+                                running, do not send emails do not
+                                check the lonc/d connections, do not
+                                generate lon-status
+   --justreload            Only tell the daemons to reload the config files,
+				do not send emails do not
+                                check if the daemons are running, do not
+                                generate lon-status
+   --justiptables          Only update the dynamic iptables rules for the
+                                lond port; do not send emails, do not
+                                check if the daemons are running, do not
+                                generate lon-status
+USAGE
+}
 
+# ================================================================ Main Program
+sub main () {
+    my ($help,$justcheckdaemons,$noemail,$justcheckconnections,
+	$justreload,$justiptables);
+    &GetOptions("help"                 => \$help,
+		"justcheckdaemons"     => \$justcheckdaemons,
+		"noemail"              => \$noemail,
+		"justcheckconnections" => \$justcheckconnections,
+		"justreload"           => \$justreload,
+                "justiptables"         => \$justiptables
+		);
+    if ($help) { &usage(); return; }
+# --------------------------------- Read loncapa_apache.conf and loncapa.conf
+    my $perlvarref=LONCAPA::Configuration::read_conf('loncapa.conf');
+    %perlvar=%{$perlvarref};
+    undef $perlvarref;
+    delete $perlvar{'lonReceipt'}; # remove since sensitive and not needed
+    delete $perlvar{'lonSqlAccess'}; # remove since sensitive and not needed
+    chdir($perlvar{'lonDaemons'});
+# --------------------------------------- Make sure that LON-CAPA is configured
+# I only test for one thing here (lonHostID).  This is just a safeguard.
+    if ('{[[[[lonHostID]]]]}' eq $perlvar{'lonHostID'}) {
+	print("Unconfigured machine.\n");
+	my $emailto=$perlvar{'lonSysEMail'};
+	my $hostname = Sys::Hostname::FQDN::fqdn();
+	$hostname=~s/\.+/./g;
+	$hostname=~s/\-+/-/g;
+	$hostname=~s/[^\w\.-]//g; # make sure is safe to pass through shell
+	my $subj="LON: Unconfigured machine $hostname";
+	system("echo 'Unconfigured machine $hostname.' |".
+               " mail -s '$subj' $emailto > /dev/null");
+	exit 1;
+    }
 
+# ----------------------------- Make sure this process is running from user=www
+    my $wwwid=getpwnam('www');
+    if ($wwwid!=$<) {
+	print("User ID mismatch. This program must be run as user 'www'.\n");
+	my $emailto="$perlvar{'lonAdmEMail'} $perlvar{'lonSysEMail'}";
+	my $subj="LON: $perlvar{'lonHostID'} User ID mismatch";
+	system("echo 'User ID mismatch. loncron must be run as user www.' |".
+               " mail -s '$subj' $emailto > /dev/null");
+	exit 1;
+    }
 
+# -------------------------------------------- Force reload of host information
+    my $nomemcache;
+    if ($justcheckdaemons) {
+        $nomemcache=1;
+        my $memcachepidfile="$perlvar{'lonDaemons'}/logs/memcached.pid";
+        my $memcachepid;
+        if (-e $memcachepidfile) {
+            my $memfh=IO::File->new($memcachepidfile);
+            $memcachepid=<$memfh>;
+            chomp($memcachepid);
+            if ($memcachepid =~ /^\d+$/ && kill 0 => $memcachepid) {
+                undef($nomemcache);
+            }
+        }
+    }
+    if (!$justiptables) {
+        &Apache::lonnet::load_hosts_tab(1,$nomemcache);
+        &Apache::lonnet::load_domain_tab(1,$nomemcache);
+        &Apache::lonnet::get_iphost(1,$nomemcache);
+    }
+
+# ----------------------------------------- Force firewall update for lond port
+
+    if ((!$justcheckdaemons) && (!$justreload)) {
+        my $now = time;
+        my $tmpfile = $perlvar{'lonDaemons'}.'/tmp/lciptables_iphost_'.
+                      $now.$$.int(rand(10000));
+        if (open(my $fh,">$tmpfile")) {
+            my %iphosts = &Apache::lonnet::get_iphost();
+            foreach my $key (keys(%iphosts)) {
+                print $fh "$key\n";
+            }
+            close($fh);
+            if (&LONCAPA::try_to_lock('/tmp/lock_lciptables')) {
+                my $execpath = $perlvar{'lonDaemons'}.'/lciptables';
+                system("$execpath $tmpfile");
+                unlink('/tmp/lock_lciptables');  # Remove the lock file.
+            }
+            unlink($tmpfile);
+        }
+    }
 
+# ---------------------------------------------------------------- Start report
 
+    $errors=0;
+    $warnings=0;
+    $notices=0;
+
+
+    my $fh;
+    if (!$justcheckdaemons && !$justcheckconnections && !$justreload && !$justiptables) {
+	$fh=&start_logging();
+
+	&log_machine_info($fh);
+	&clean_tmp($fh);
+	&clean_lonIDs($fh);
+        &clean_balanceIDs($fh);
+        &clean_webDAV_sessionIDs($fh);
+        &clean_ltiIDs($fh);
+	&check_httpd_logs($fh);
+	&rotate_lonnet_logs($fh);
+	&rotate_other_logs($fh);
+    }
+    if (!$justcheckconnections && !$justreload && !$justiptables) {
+	&checkon_daemon($fh,'lonmemcached',40000);
+	&checkon_daemon($fh,'lonsql',200000);
+	if ( &checkon_daemon($fh,'lond',40000,'USR1') eq 'running') {
+	    &checkon_daemon($fh,'lond',40000,'USR2');
+	}
+	&checkon_daemon($fh,'lonc',40000,'USR1');
+        &checkon_daemon($fh,'lonmaxima',40000);
+        &checkon_daemon($fh,'lonr',40000);
+    }
+    if ($justreload) {
+        &clean_nosslverify($fh);
+        &write_connection_config();
+        &write_hosttypes();
+        &update_revocation_list(); 
+	&checkon_daemon($fh,'lond',40000,'USR2');
+	&checkon_daemon($fh,'lonc',40000,'USR2');
+    }
+    if ($justcheckconnections) {
+	&test_connections($fh);
+    }
+    if (!$justcheckdaemons && !$justcheckconnections && !$justreload && !$justiptables) {
+        my ($bracketed_warning,$check_bracketed_paste) = &check_bash_settings();
+        if ($check_bracketed_paste) {
+           &log($fh,'<hr /><a name="bashconf" /><h2>bash readline config</h2><h3>Bracketed Paste</h3>'.
+                '<p>Distros using bash readline library 8.1 or later need bracketed paste disabled for the R bash shell for the www user so R commands sent to lonr daemon will be processed.</p>');
+           my $bash_www_cnf = '/home/www/.inputrc';
+           my $non_empty_conffile;
+           unless ($bracketed_warning) {
+               if (-e $bash_www_cnf) {
+                   my $filesize = (stat($bash_www_cnf))[7];
+                   if ($filesize > 0) {
+                       $non_empty_conffile = 1;
+                   }
+               }
+           }
+           if (($bracketed_warning) || ($non_empty_conffile)) {
+               my $bash_update = &set_bracketed_paste_off();
+               if ($bash_update) {
+                   &log($fh,'<p>'.$bash_update.'</p>'."\n");
+               }
+           } else {
+               &log($fh,'<p>No action needed; /home/www/.inputrc already set.</p>'."\n");    
+           }
+        } else {
+            &log($fh,'<hr /><a name="bashconf" /><h2>bash readline config</h2><h3>Bracketed Paste</h3>'.
+                     '<p>No action needed for distros using pre-8.1 bash readline library</p>'."\n");
+        }
+        my $domconf = &get_domain_config();
+        my ($threshold,$sysmail,$reportstatus,$weightsref,$exclusionsref) =
+            &get_permcount_settings($domconf);
+	&check_delayed_msg($fh,$weightsref,$exclusionsref);
+        &write_loncaparevs();
+        &write_serverhomeIDs();
+	&write_checksums();
+        &write_hostips();
+        my %sslrem = &clean_nosslverify($fh);
+        my %conchgs = &write_connection_config();
+        my %hosttypechgs = &write_hosttypes();
+        my $hadcrlchg = &update_revocation_list();
+        if ((keys(%conchgs) > 0) || (keys(%hosttypechgs) > 0) ||
+            $hadcrlchg || (keys(%sslrem) > 0)) {
+            &checkon_daemon($fh,'lond',40000,'USR2');
+            &reset_nosslverify_pids($fh,%sslrem);
+        }
+        &finish_logging($fh,$weightsref);
+        &log_simplestatus();
+        if ($totalcount>$threshold && !$noemail) { &send_mail($sysmail,$reportstatus); }
+    }
+}
 
+&main();
+1;