--- loncom/xml/lonxml.pm	2005/03/10 19:10:31	1.362
+++ loncom/xml/lonxml.pm	2006/10/04 19:50:43	1.415.2.1
@@ -1,7 +1,7 @@
 # The LearningOnline Network with CAPA
 # XML Parser Module 
 #
-# $Id: lonxml.pm,v 1.362 2005/03/10 19:10:31 matthew Exp $
+# $Id: lonxml.pm,v 1.415.2.1 2006/10/04 19:50:43 albertel Exp $
 #
 # Copyright Michigan State University Board of Trustees
 #
@@ -40,7 +40,7 @@
 
 package Apache::lonxml; 
 use vars 
-qw(@pwd @outputstack $redirection $import @extlinks $metamode $evaluate %insertlist @namespace $errorcount $warningcount @htmlareafields);
+qw(@pwd @outputstack $redirection $import @extlinks $metamode $evaluate %insertlist @namespace $errorcount $warningcount);
 use strict;
 use HTML::LCParser();
 use HTML::TreeBuilder();
@@ -52,6 +52,7 @@ use Math::Random();
 use Opcode();
 use POSIX qw(strftime);
 use Time::HiRes qw( gettimeofday tv_interval );
+use Symbol();
 
 sub register {
   my ($space,@taglist) = @_;
@@ -81,7 +82,7 @@ use Apache::languagetags();
 use Apache::edit();
 use Apache::inputtags();
 use Apache::outputtags();
-use Apache::lonnet();
+use Apache::lonnet;
 use Apache::File();
 use Apache::loncommon();
 use Apache::lonfeedback();
@@ -122,9 +123,6 @@ $evaluate = 1;
 # stores the list of active tag namespaces
 @namespace=();
 
-# has the dynamic menu been updated to know about this resource
-$Apache::lonxml::registered=0;
-
 # a pointer the the Apache request object
 $Apache::lonxml::request='';
 
@@ -148,50 +146,42 @@ $Apache::lonxml::post_evaluate=1;
 #a header message to emit in the case of any generated warning or errors
 $Apache::lonxml::warnings_error_header='';
 
-sub xmlbegin {
-    my ($style)=@_;
-    my $output='';
-    @htmlareafields=();
-    if ($ENV{'browser.mathml'}) {
-	$output='<?xml version="1.0"?>'
-            #.'<?xml-stylesheet type="text/css" href="/adm/MathML/mathml.css"?>'."\n"
-#            .'<!DOCTYPE html SYSTEM "/adm/MathML/mathml.dtd" '
-            
-#	    .'<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd" [<!ENTITY mathns "http://www.w3.org/1998/Math/MathML">] >'
-	    .'<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1 plus MathML 2.0 plus SVG 1.1//EN" "http://www.w3.org/2002/04/xhtml-math-svg/xhtml-math-svg.dtd">'
-            .'<html xmlns:math="http://www.w3.org/1998/Math/MathML" ' 
-	    .'xmlns="http://www.w3.org/1999/xhtml">';
-    } else {
-	$output='<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"><html>';
-    }
-    if ($style eq 'encode') {
-	$output=&HTML::Entities::encode($output,'<>&"');
-    }
-    return $output;
+#  Control whether or not LaTeX symbols should be substituted for their
+#  \ style equivalents...this may be turned off e.g. in an verbatim
+#  environment.
+
+$Apache::lonxml::substitute_LaTeX_symbols = 1; # Starts out on.
+
+sub enable_LaTeX_substitutions {
+    $Apache::lonxml::substitute_LaTeX_symbols = 1;
+}
+sub disable_LaTeX_substitutions {
+    $Apache::lonxml::substitute_LaTeX_symbols = 0;
 }
 
 sub xmlend {
     my ($target,$parser)=@_;
     my $mode='xml';
     my $status='OPEN';
-    if ($Apache::lonhomework::parsing_a_problem) {
+    if ($Apache::lonhomework::parsing_a_problem ||
+	$Apache::lonhomework::parsing_a_task ) {
 	$mode='problem';
 	$status=$Apache::inputtags::status[-1]; 
     }
     my $discussion;
-    &Apache::loncommon::get_unprocessed_cgi
-        ($ENV{'query_string'},['LONCAPA_INTERNAL_no_discussion']);
-    if (! exists($ENV{'form.LONCAPA_INTERNAL_no_discussion'}) ||
-        $ENV{'form.LONCAPA_INTERNAL_no_discussion'} ne 'true') {
+    &Apache::loncommon::get_unprocessed_cgi($ENV{'QUERY_STRING'},
+					   ['LONCAPA_INTERNAL_no_discussion']);
+    if (! exists($env{'form.LONCAPA_INTERNAL_no_discussion'}) ||
+        $env{'form.LONCAPA_INTERNAL_no_discussion'} ne 'true') {
         $discussion=&Apache::lonfeedback::list_discussion($mode,$status);
     }
     if ($target eq 'tex') {
 	$discussion.='<tex>\keephidden{ENDOFPROBLEM}\vskip 0.5mm\noindent\makebox[\textwidth/$number_of_columns][b]{\hrulefill}\end{document}</tex>';
 	&Apache::lonxml::newparser($parser,\$discussion,'');
 	return '';
-    } else {
-	return $discussion.&Apache::loncommon::endbodytag();
     }
+
+    return $discussion;
 }
 
 sub tokeninputfield {
@@ -249,9 +239,9 @@ sub maketoken {
 	$symb=&Apache::lonnet::symbread();
     }
     unless ($tuname) {
-	$tuname=$ENV{'user.name'};
-        $tudom=$ENV{'user.domain'};
-        $tcrsid=$ENV{'request.course.id'};
+	$tuname=$env{'user.name'};
+        $tudom=$env{'user.domain'};
+        $tcrsid=$env{'request.course.id'};
     }
 
     return &Apache::lonnet::checkout($symb,$tuname,$tudom,$tcrsid);
@@ -271,13 +261,7 @@ sub printtokenheader {
         $tcrsid=$courseid;
     }
 
-    my %reply=&Apache::lonnet::get('environment',
-              ['firstname','middlename','lastname','generation'],
-              $tudom,$tuname);
-    my $plainname=$reply{'firstname'}.' '. 
-                  $reply{'middlename'}.' '.
-                  $reply{'lastname'}.' '.
-		  $reply{'generation'};
+    my $plainname=&Apache::loncommon::plainname($tuname,$tudom);
 
     if ($target eq 'web') {
         my %idhash=&Apache::lonnet::idrget($tudom,($tuname));
@@ -287,7 +271,7 @@ sub printtokenheader {
                '<br />'.&mt('User').': '.$tuname.' at '.$tudom.
 	       '<br />'.&mt('ID').': '.$idhash{$tuname}.
 	       '<br />'.&mt('CourseID').': '.$tcrsid.
-	       '<br />'.&mt('Course').': '.$ENV{'course.'.$tcrsid.'.description'}.
+	       '<br />'.&mt('Course').': '.$env{'course.'.$tcrsid.'.description'}.
                '<br />'.&mt('DocID').': '.$token.
                '<br />'.&mt('Time').': '.&Apache::lonlocal::locallocaltime().'<hr />';
     } else {
@@ -295,18 +279,6 @@ sub printtokenheader {
     }
 }
 
-sub fontsettings {
-    my $headerstring='';
-    if (($ENV{'browser.os'} eq 'mac') && (!$ENV{'browser.mathml'})) { 
-	$headerstring.=
-	    '<meta Content-Type="text/html; charset=x-mac-roman" />';
-    } elsif (!$ENV{'browser.mathml'} && $ENV{'browser.unicode'}) {
-	$headerstring.=
-	    '<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />';
-    }
-    return $headerstring;
-}
-
 sub printalltags {
   my $temp;
   foreach $temp (sort keys %Apache::lonxml::alltags) {
@@ -320,6 +292,7 @@ sub xmlparse {
 
  &setup_globals($request,$target);
  &Apache::inputtags::initialize_inputtags();
+ &Apache::bridgetask::initialize_bridgetask();
  &Apache::outputtags::initialize_outputtags();
  &Apache::edit::initialize_edit();
  &Apache::londefdef::initialize_londefdef();
@@ -328,9 +301,9 @@ sub xmlparse {
 # do we have a course style file?
 #
 
- if ($ENV{'request.course.id'} && $ENV{'request.state'} ne 'construct') {
+ if ($env{'request.course.id'} && $env{'request.state'} ne 'construct') {
      my $bodytext=
-	 $ENV{'course.'.$ENV{'request.course.id'}.'.default_xml_style'};
+	 $env{'course.'.$env{'request.course.id'}.'.default_xml_style'};
      if ($bodytext) {
 	 foreach my $file (split(',',$bodytext)) {
 	     my $location=&Apache::lonnet::filelocation('',$file);
@@ -341,8 +314,8 @@ sub xmlparse {
 	     }
 	 }
      }
- } elsif ($ENV{'construct.style'} && ($ENV{'request.state'} eq 'construct')) {
-     my $location=&Apache::lonnet::filelocation('',$ENV{'construct.style'});
+ } elsif ($env{'construct.style'} && ($env{'request.state'} eq 'construct')) {
+     my $location=&Apache::lonnet::filelocation('',$env{'construct.style'});
      my $styletext=&Apache::lonnet::getfile($location);
        if ($styletext ne '-1') {
           %style_for_target = (%style_for_target,
@@ -351,7 +324,7 @@ sub xmlparse {
  }
 #&printalltags();
  my @pars = ();
- my $pwd=$ENV{'request.filename'};
+ my $pwd=$env{'request.filename'};
  $pwd =~ s:/[^/]*$::;
  &newparser(\@pars,\$content_file_string,$pwd);
 
@@ -367,70 +340,54 @@ sub xmlparse {
  &initdepth();
  &init_alarm();
  my $finaloutput = &inner_xmlparse($target,\@stack,\@parstack,\@pars,
-				   $safeeval,\%style_for_target);
+				   $safeeval,\%style_for_target,1);
 
- if ($ENV{'request.uri'}) {
-    &writeallows($ENV{'request.uri'});
+ if ($env{'request.uri'}) {
+    &writeallows($env{'request.uri'});
  }
  &do_registered_ssi();
  if ($Apache::lonxml::counter_changed) { &store_counter() }
- if ($ENV{'form.return_only_error_and_warning_counts'}) {
+
+ &clean_safespace($safeeval);
+
+ if ($env{'form.return_only_error_and_warning_counts'}) {
      return "$errorcount:$warningcount";
  }
  return $finaloutput;
 }
 
-sub htmlclean {
-    my ($raw,$full)=@_;
-# Take care of CRLF etc
-
-    $raw=~s/\r\f/\n/gs; $raw=~s/\f\r/\n/gs;
-    $raw=~s/\r\n/\n/gs; $raw=~s/\n\r/\n/gs;
-    $raw=~s/\f/\n/gs; $raw=~s/\r/\n/gs;
-    $raw=~s/\&\#10\;/\n/gs; $raw=~s/\&\#13\;/\n/gs;
-
-# Generate empty tags, remove wrong end tags
-    $raw=~s/\<(br|hr|img|meta|allow|basefont)([^\>\/]*?)\>/\<$1$2 \/\>/gis;
-    $raw=~s/\<\/(br|hr|img|meta|allow|basefont)\>//gis;
-    unless ($full) {
-       $raw=~s/\<[\/]*(body|head|html)\>//gis;
-    }
-# Make standard tags lowercase
-    foreach ('html','body','head','meta','h1','h2','h3','h4','b','i','m',
-             'table','tr','td','th','p','br','hr','img','embed','font',
-             'a','strong','center','title','basefont','li','ol','ul',
-             'input','select','form','option','script','pre') {
-	$raw=~s/\<$_\s*\>/\<$_\>/gis;
-        $raw=~s/\<\/$_\s*\>/<\/$_\>/gis;
-        $raw=~s/\<$_\s([^\>]*)\>/<$_ $1\>/gis;
-    }
-    return $raw;
-}
-
 sub latex_special_symbols {
     my ($string,$where)=@_;
+    #
+    #  If e.g. in verbatim mode, then don't substitute.
+    #  but return original string.
+    #
+    if (!($Apache::lonxml::substitute_LaTeX_symbols)) {
+	return $string;
+    }
     if ($where eq 'header') {
-	$string =~ s/(\\|_|\^)/ /g;
+	$string =~ s/\\/\$\\backslash\$/g; # \  -> $\backslash$ per LaTex line by line pg  10.
 	$string =~ s/(\$|%|\{|\})/\\$1/g;
-	$string =~ s/_/ /g;
 	$string=&Apache::lonprintout::character_chart($string);
 	# any & or # leftover should be safe to just escape
         $string=~s/([^\\])\&/$1\\\&/g;
         $string=~s/([^\\])\#/$1\\\#/g;
+	$string =~ s/_/\\_/g;              # _ -> \_
+	$string =~ s/\^/\\\^{}/g;          # ^ -> \^{} 
     } else {
 	$string=~s/\\/\\ensuremath{\\backslash}/g;
-	$string=~s/([^\\]|^)\%/$1\\\%/g;
-	$string=~s/([^\\]|^)\$/$1\\\$/g;
-	$string=~s/([^\\])\_/$1\\_/g;
-	$string=~s/\$\$/\$\\\$/g;
-	$string=~s/\_\_/\_\\\_/g;
-	$string=~s/\#\#/\#\\\#/g;
+	$string=~s/\\\%|\%/\\\%/g;
+	$string=~s/\\{|{/\\{/g;
+	$string=~s/\\}|}/\\}/g;
+	$string=~s/\\ensuremath\\{\\backslash\\}/\\ensuremath{\\backslash}/g;
+	$string=~s/\\\$|\$/\\\$/g;
+	$string=~s/\\\_|\_/\\\_/g;
         $string=~s/([^\\]|^)(\~|\^)/$1\\$2\\strut /g;
 	$string=~s/(>|<)/\\ensuremath\{$1\}/g; #more or less
 	$string=&Apache::lonprintout::character_chart($string);
 	# any & or # leftover should be safe to just escape
-        $string=~s/([^\\]|^)\&/$1\\\&/g;
-        $string=~s/([^\\]|^)\#/$1\\\#/g;
+	$string=~s/\\\&|\&/\\\&/g;
+	$string=~s/\\\#|\#/\\\#/g;
         $string=~s/\|/\$\\mid\$/g;
 #single { or } How to escape?
     }
@@ -438,11 +395,12 @@ sub latex_special_symbols {
 }
 
 sub inner_xmlparse {
-  my ($target,$stack,$parstack,$pars,$safeeval,$style_for_target)=@_;
+  my ($target,$stack,$parstack,$pars,$safeeval,$style_for_target,$start)=@_;
   my $finaloutput = '';
   my $result;
   my $token;
   my $dontpop=0;
+  my $startredirection = $Apache::lonxml::redirection;
   while ( $#$pars > -1 ) {
     while ($token = $$pars['-1']->get_token) {
       if (($token->[0] eq 'T') || ($token->[0] eq 'C') ) {
@@ -552,7 +510,12 @@ sub inner_xmlparse {
   #   $finaloutput.=&endredirection;
   # }
 
-
+  if ( $start && $target eq 'grade') { &endredirection(); }
+  if ( $Apache::lonxml::redirection > $startredirection) {
+      while ($Apache::lonxml::redirection > $startredirection) {
+	  $finaloutput .= &endredirection();
+      }
+  }
   if (($ENV{'QUERY_STRING'}) && ($target eq 'web')) {
     $finaloutput=&afterburn($finaloutput);
   }	    
@@ -638,8 +601,6 @@ sub callsub {
 sub setup_globals {
   my ($request,$target)=@_;
   $Apache::lonxml::request=$request;
-  $Apache::lonxml::registered = 0;
-  @Apache::lonxml::htmlareafields=();
   $errorcount=0;
   $warningcount=0;
   $Apache::lonxml::default_homework_loaded=0;
@@ -650,6 +611,7 @@ sub setup_globals {
   @Apache::lonxml::ssi_info=();
   $Apache::lonxml::post_evaluate=1;
   $Apache::lonxml::warnings_error_header='';
+  $Apache::lonxml::substitute_LaTeX_symbols = 1;
   if ($target eq 'meta') {
     $Apache::lonxml::redirection = 0;
     $Apache::lonxml::metamode = 1;
@@ -661,7 +623,7 @@ sub setup_globals {
     $Apache::lonxml::evaluate = 1;
     $Apache::lonxml::import = 1;
   } elsif ($target eq 'grade') {
-    &startredirection;
+    &startredirection(); #ended in inner_xmlparse on exit
     $Apache::lonxml::metamode = 0;
     $Apache::lonxml::evaluate = 1;
     $Apache::lonxml::import = 1;
@@ -690,16 +652,22 @@ sub setup_globals {
 
 sub init_safespace {
   my ($target,$safeeval,$safehole,$safeinit) = @_;
+  $safeeval->deny_only(':dangerous');
+  $safeeval->reval('use Math::Complex;');
+  $safeeval->permit_only(":default");
   $safeeval->permit("entereval");
   $safeeval->permit(":base_math");
   $safeeval->permit("sort");
   $safeeval->permit("time");
+  $safeeval->deny("rand");
+  $safeeval->deny("srand");
   $safeeval->deny(":base_io");
   $safehole->wrap(\&Apache::scripttag::xmlparse,$safeeval,'&xmlparse');
   $safehole->wrap(\&Apache::outputtags::multipart,$safeeval,'&multipart');
   $safehole->wrap(\&Apache::lonnet::EXT,$safeeval,'&EXT');
   $safehole->wrap(\&Apache::chemresponse::chem_standard_order,$safeeval,
 		  '&chem_standard_order');
+  $safehole->wrap(\&Apache::response::check_status,$safeeval,'&check_status');
 
   $safehole->wrap(\&Math::Cephes::asin,$safeeval,'&asin');
   $safehole->wrap(\&Math::Cephes::acos,$safeeval,'&acos');
@@ -744,6 +712,36 @@ sub init_safespace {
   $safehole->wrap(\&Math::Cephes::stdtr ,$safeeval,'&stdtr' );
   $safehole->wrap(\&Math::Cephes::stdtri,$safeeval,'&stdtri');
 
+  $safehole->wrap(\&Math::Cephes::Matrix::mat,$safeeval,'&mat');
+  $safehole->wrap(\&Math::Cephes::Matrix::new,$safeeval,
+		  '&Math::Cephes::Matrix::new');
+  $safehole->wrap(\&Math::Cephes::Matrix::coef,$safeeval,
+		  '&Math::Cephes::Matrix::coef');
+  $safehole->wrap(\&Math::Cephes::Matrix::clr,$safeeval,
+		  '&Math::Cephes::Matrix::clr');
+  $safehole->wrap(\&Math::Cephes::Matrix::add,$safeeval,
+		  '&Math::Cephes::Matrix::add');
+  $safehole->wrap(\&Math::Cephes::Matrix::sub,$safeeval,
+		  '&Math::Cephes::Matrix::sub');
+  $safehole->wrap(\&Math::Cephes::Matrix::mul,$safeeval,
+		  '&Math::Cephes::Matrix::mul');
+  $safehole->wrap(\&Math::Cephes::Matrix::div,$safeeval,
+		  '&Math::Cephes::Matrix::div');
+  $safehole->wrap(\&Math::Cephes::Matrix::inv,$safeeval,
+		  '&Math::Cephes::Matrix::inv');
+  $safehole->wrap(\&Math::Cephes::Matrix::transp,$safeeval,
+		  '&Math::Cephes::Matrix::transp');
+  $safehole->wrap(\&Math::Cephes::Matrix::simq,$safeeval,
+		  '&Math::Cephes::Matrix::simq');
+  $safehole->wrap(\&Math::Cephes::Matrix::mat_to_vec,$safeeval,
+		  '&Math::Cephes::Matrix::mat_to_vec');
+  $safehole->wrap(\&Math::Cephes::Matrix::vec_to_mat,$safeeval,
+		  '&Math::Cephes::Matrix::vec_to_mat');
+  $safehole->wrap(\&Math::Cephes::Matrix::check,$safeeval,
+		  '&Math::Cephes::Matrix::check');
+  $safehole->wrap(\&Math::Cephes::Matrix::check,$safeeval,
+		  '&Math::Cephes::Matrix::check');
+
 #  $safehole->wrap(\&Math::Cephes::new_fract,$safeeval,'&new_fract');
 #  $safehole->wrap(\&Math::Cephes::radd,$safeeval,'&radd');
 #  $safehole->wrap(\&Math::Cephes::rsub,$safeeval,'&rsub');
@@ -780,13 +778,46 @@ sub init_safespace {
 # $safeeval->deny(":base_orig");
   $safeeval->permit("require");
   $safeinit .= ';$external::target="'.$target.'";';
-  my $rndseed;
-  my ($symb,$courseid,$domain,$name) = &Apache::lonxml::whichuser();
-  $rndseed=&Apache::lonnet::rndseed($symb,$courseid,$domain,$name);
-  $safeinit .= ';$external::randomseed="'.$rndseed.'";';
-  &Apache::lonxml::debug("Setting rndseed to $rndseed");
   &Apache::run::run($safeinit,$safeeval);
+  &initialize_rndseed($safeeval);
+}
+
+sub clean_safespace {
+    my ($safeeval) = @_;
+    delete_package_recurse($safeeval->{Root});
+}
+
+sub delete_package_recurse {
+     my ($package) = @_;
+     my @subp;
+     {
+	 no strict 'refs';
+	 while (my ($key,$val) = each(%{*{"$package\::"}})) {
+	     if (!defined($val)) { next; }
+	     local (*ENTRY) = $val;
+	     if (defined *ENTRY{HASH} && $key =~ /::$/ &&
+		 $key ne "main::" && $key ne "<none>::")
+	     {
+		 my ($p) = $package ne "main" ? "$package\::" : "";
+		 ($p .= $key) =~ s/::$//;
+		 push(@subp,$p);
+	     }
+	 }
+     }
+     foreach my $p (@subp) {
+	 delete_package_recurse($p);
+     }
+     Symbol::delete_package($package);
+}
 
+sub initialize_rndseed {
+    my ($safeeval)=@_;
+    my $rndseed;
+    my ($symb,$courseid,$domain,$name) = &Apache::lonxml::whichuser();
+    $rndseed=&Apache::lonnet::rndseed($symb,$courseid,$domain,$name);
+    my $safeinit = '$external::randomseed="'.$rndseed.'";';
+    &Apache::lonxml::debug("Setting rndseed to $rndseed");
+    &Apache::run::run($safeinit,$safeeval);
 }
 
 sub default_homework_load {
@@ -835,7 +866,7 @@ sub startredirection {
 
 sub endredirection {
     if (!$Apache::lonxml::redirection) {
-	&Apache::lonxml::error("Endredirection was called, before a startredirection, perhaps you have unbalanced tags. Some debuging information:".join ":",caller);
+	&Apache::lonxml::error("Endredirection was called before a startredirection, perhaps you have unbalanced tags. Some debugging information:".join ":",caller);
 	return '';
     }
     $Apache::lonxml::redirection--;
@@ -902,6 +933,16 @@ sub decreasedepth {
 #print "<br />e $Apache::lonxml::depth : $Apache::lonxml::olddepth : $token->[1] : $curdepth\n";
 }
 
+sub get_id {
+    my ($parstack,$safeeval)=@_;
+    my $id= &Apache::lonxml::get_param('id',$parstack,$safeeval);
+    if ($env{'request.state'} eq 'construct' && $id =~ /(\.|_)/) {
+	&error(&mt("IDs are not allowed to contain &quot;<tt>_</tt>&quot; or &quot;<tt>.</tt>&quot;"));
+    }
+    if ($id =~ /^\s*$/) { $id = $Apache::lonxml::curdepth; }
+    return $id;
+}
+
 sub get_all_text_unbalanced {
 #there is a copy of this in lonpublisher.pm
     my($tag,$pars)= @_;
@@ -910,7 +951,11 @@ sub get_all_text_unbalanced {
     $tag='<'.$tag.'>';
     while ($token = $$pars[-1]->get_token) {
 	if (($token->[0] eq 'T')||($token->[0] eq 'C')||($token->[0] eq 'D')) {
-	    $result.=$token->[1];
+	    if ($token->[0] eq 'T' && $token->[2]) {
+		$result.='<![CDATA['.$token->[1].']]>';
+	    } else {
+		$result.=$token->[1];
+	    }
 	} elsif ($token->[0] eq 'PI') {
 	    $result.=$token->[2];
 	} elsif ($token->[0] eq 'S') {
@@ -941,8 +986,11 @@ sub increment_counter {
 }
 
 sub init_counter {
-    if (defined($ENV{'form.counter'})) {
-	$Apache::lonxml::counter=$ENV{'form.counter'};
+    if ($env{'request.state'} eq 'construct') {
+	$Apache::lonxml::counter=1;
+	$Apache::lonxml::counter_changed=1;
+    } elsif (defined($env{'form.counter'})) {
+	$Apache::lonxml::counter=$env{'form.counter'};
 	$Apache::lonxml::counter_changed=0;
     } else {
 	$Apache::lonxml::counter=1;
@@ -952,9 +1000,36 @@ sub init_counter {
 
 sub store_counter {
     &Apache::lonnet::appenv(('form.counter' => $Apache::lonxml::counter));
+    $Apache::lonxml::counter_changed=0;
     return '';
 }
 
+{
+    my $state;
+    sub clear_problem_counter {
+	undef($state);
+	&Apache::lonnet::delenv('form.counter');
+	&Apache::lonxml::init_counter();
+	&Apache::lonxml::store_counter();
+    }
+
+    sub remember_problem_counter {
+	&Apache::lonnet::transfer_profile_to_env(undef,undef,1);
+	$state = $env{'form.counter'};
+    }
+
+    sub restore_problem_counter {
+	if (defined($state)) {
+	    &Apache::lonnet::appenv(('form.counter' => $state));
+	}
+    }
+    sub get_problem_counter {
+	if ($Apache::lonxml::counter_changed) { &store_counter() }
+	&Apache::lonnet::transfer_profile_to_env(undef,undef,1);
+	return $env{'form.counter'};
+    }
+}
+
 sub get_all_text {
     my($tag,$pars,$style)= @_;
     my $gotfullstack=1;
@@ -976,7 +1051,11 @@ sub get_all_text {
 	    while (($depth >=0) && ($token = $$pars[-1]->get_token)) {
 		#&Apache::lonxml::debug("e token:$token->[0]:$depth:$token->[1]:".$#$pars.":".$#Apache::lonxml::pwd);
 		if (($token->[0] eq 'T')||($token->[0] eq 'C')||($token->[0] eq 'D')) {
-		    $result.=$token->[1];
+		    if ($token->[2]) {
+			$result.='<![CDATA['.$token->[1].']]>';
+		    } else {
+			$result.=$token->[1];
+		    }
 		} elsif ($token->[0] eq 'PI') {
 		    $result.=$token->[2];
 		} elsif ($token->[0] eq 'S') {
@@ -1028,7 +1107,11 @@ sub get_all_text {
 		#&Apache::lonxml::debug("s token:$token->[0]:$depth:$token->[1]");
 		if (($token->[0] eq 'T')||($token->[0] eq 'C')||
 		    ($token->[0] eq 'D')) {
-		    $result.=$token->[1];
+		    if ($token->[2]) {
+			$result.='<![CDATA['.$token->[1].']]>';
+		    } else {
+			$result.=$token->[1];
+		    }
 		} elsif ($token->[0] eq 'PI') {
 		    $result.=$token->[2];
 		} elsif ($token->[0] eq 'S') {
@@ -1056,7 +1139,8 @@ sub get_all_text {
 sub newparser {
   my ($parser,$contentref,$dir) = @_;
   push (@$parser,HTML::LCParser->new($contentref));
-  $$parser['-1']->xml_mode('1');
+  $$parser[-1]->xml_mode(1);
+  $$parser[-1]->marked_sections(1);
   if ( $dir eq '' ) {
     push (@Apache::lonxml::pwd, $Apache::lonxml::pwd[$#Apache::lonxml::pwd]);
   } else {
@@ -1080,11 +1164,19 @@ sub parstring {
   return $temp;
 }
 
+sub extlink {
+    my ($res,$exact)=@_;
+    if (!$exact) {
+	$res=&Apache::lonnet::hreflocation($Apache::lonxml::pwd[-1],$res);
+    }
+    push(@Apache::lonxml::extlinks,$res)	 
+}
+
 sub writeallows {
     unless ($#extlinks>=0) { return; }
-    my $thisurl='/res/'.&Apache::lonnet::declutter(shift);
-    if ($ENV{'httpref.'.$thisurl}) {
-	$thisurl=$ENV{'httpref.'.$thisurl};
+    my $thisurl = &Apache::lonnet::clutter(shift);
+    if ($env{'httpref.'.$thisurl}) {
+	$thisurl=$env{'httpref.'.$thisurl};
     }
     my $thisdir=$thisurl;
     $thisdir=~s/\/[^\/]+$//;
@@ -1117,24 +1209,24 @@ sub afterburn {
     my $result=shift;
     &Apache::loncommon::get_unprocessed_cgi($ENV{'QUERY_STRING'},
 					    ['highlight','anchor','link']);
-    if ($ENV{'form.highlight'}) {
-       foreach (split(/\,/,$ENV{'form.highlight'})) {
+    if ($env{'form.highlight'}) {
+       foreach (split(/\,/,$env{'form.highlight'})) {
            my $anchorname=$_;
 	   my $matchthis=$anchorname;
            $matchthis=~s/\_+/\\s\+/g;
            $result=~s/(\Q$matchthis\E)/\<font color=\"red\"\>$1\<\/font\>/gs;
        }
     }
-    if ($ENV{'form.link'}) {
-       foreach (split(/\,/,$ENV{'form.link'})) {
+    if ($env{'form.link'}) {
+       foreach (split(/\,/,$env{'form.link'})) {
            my ($anchorname,$linkurl)=split(/\>/,$_);
 	   my $matchthis=$anchorname;
            $matchthis=~s/\_+/\\s\+/g;
            $result=~s/(\Q$matchthis\E)/\<a href=\"$linkurl\"\>$1\<\/a\>/gs;
        }
     }
-    if ($ENV{'form.anchor'}) {
-        my $anchorname=$ENV{'form.anchor'};
+    if ($env{'form.anchor'}) {
+        my $anchorname=$env{'form.anchor'};
 	my $matchthis=$anchorname;
         $matchthis=~s/\_+/\\s\+/g;
         $result=~s/(\Q$matchthis\E)/\<a name=\"$anchorname\"\>$1\<\/a\>/s;
@@ -1164,7 +1256,6 @@ sub createnewhtml {
     my $title=&mt('Title of document goes here');
     my $body=&mt('Body of document goes here');
     my $filecontents=(<<SIMPLECONTENT);
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN" "http://www.w3.org/TR/xhtml/11/DTD/xhtml11.dtd">
 <html>
 <head>
 <title>$title</title>
@@ -1198,8 +1289,7 @@ sub inserteditinfo {
       my $initialize='';
       if ($filetype eq 'html') {
 	  my $addbuttons=&Apache::lonhtmlcommon::htmlareaaddbuttons();
-	  $initialize=&Apache::lonhtmlcommon::htmlareaheaders().
-	      &Apache::lonhtmlcommon::spellheader();
+	  $initialize=&Apache::lonhtmlcommon::spellheader();
 	  if (!&Apache::lonhtmlcommon::htmlareablocked() &&
 	      &Apache::lonhtmlcommon::htmlareabrowser()) {
 	      $initialize.=(<<FULLPAGE);
@@ -1228,10 +1318,7 @@ FULLPAGE
 	  $xml_help=&Apache::loncommon::helpLatexCheatsheet();
       }
       my $cleanbut = '';
-      if ($filetype eq 'html') {
-	  $cleanbut='<input type="submit" name="attemptclean" value="'.
-	      &mt('Save and then attempt to clean HTML').'" />';
-      }
+
       my $titledisplay=&display_title();
       my %lt=&Apache::lonlocal::texthash('st' => 'Save this',
 					 'vi' => 'View',
@@ -1242,7 +1329,6 @@ $cleanbut
 <input type="submit" name="viewmode" accesskey="v" value="$lt{'vi'}" />
 BUTTONS
       $buttons.=&Apache::lonhtmlcommon::spelllink('xmledit','filecont');
-      $buttons.=&Apache::lonhtmlcommon::htmlareaselectactive('filecont');
       my $editfooter=(<<ENDFOOTER);
 $initialize
 <hr />
@@ -1251,7 +1337,7 @@ $initialize
 $xml_help
 <input type="hidden" name="editmode" value="$lt{'ed'}" />
 $buttons<br />
-<textarea cols="80" rows="44" name="filecont" id="filecont">$filecontents</textarea>
+<textarea style="width:100%" cols="80" rows="44" name="filecont" id="filecont">$filecontents</textarea>
 <br />$buttons
 <br />
 </form>
@@ -1264,24 +1350,24 @@ ENDFOOTER
 }
 
 sub get_target {
-  my $viewgrades=&Apache::lonnet::allowed('vgr',$ENV{'request.course.id'});
-  if ( $ENV{'request.state'} eq 'published') {
-    if ( defined($ENV{'form.grade_target'})
+  my $viewgrades=&Apache::lonnet::allowed('vgr',$env{'request.course.id'});
+  if ( $env{'request.state'} eq 'published') {
+    if ( defined($env{'form.grade_target'})
 	 && ($viewgrades == 'F' )) {
-      return ($ENV{'form.grade_target'});
-    } elsif (defined($ENV{'form.grade_target'})) {
-      if (($ENV{'form.grade_target'} eq 'web') ||
-	  ($ENV{'form.grade_target'} eq 'tex') ) {
-	return $ENV{'form.grade_target'}
+      return ($env{'form.grade_target'});
+    } elsif (defined($env{'form.grade_target'})) {
+      if (($env{'form.grade_target'} eq 'web') ||
+	  ($env{'form.grade_target'} eq 'tex') ) {
+	return $env{'form.grade_target'}
       } else {
 	return 'web';
       }
     } else {
       return 'web';
     }
-  } elsif ($ENV{'request.state'} eq 'construct') {
-    if ( defined($ENV{'form.grade_target'})) {
-      return ($ENV{'form.grade_target'});
+  } elsif ($env{'request.state'} eq 'construct') {
+    if ( defined($env{'form.grade_target'})) {
+      return ($env{'form.grade_target'});
     } else {
       return 'web';
     }
@@ -1295,16 +1381,14 @@ sub handler {
     
     my $target=&get_target();
     
-    $Apache::lonxml::debug=$ENV{'user.debug'};
+    $Apache::lonxml::debug=$env{'user.debug'};
     
-    if ($ENV{'browser.mathml'}) {
-	&Apache::loncommon::content_type($request,'text/xml');
-    } else {
-	&Apache::loncommon::content_type($request,'text/html');
-    }
+    &Apache::loncommon::content_type($request,'text/html');
     &Apache::loncommon::no_cache($request);
-    $request->set_last_modified(&Apache::lonnet::metadata($request->uri,
-							  'lastrevisiondate'));
+    if ($env{'request.state'} eq 'published') {
+	$request->set_last_modified(&Apache::lonnet::metadata($request->uri,
+							      'lastrevisiondate'));
+    }
     $request->send_http_header;
     
     return OK if $request->header_only;
@@ -1320,9 +1404,9 @@ sub handler {
 #
 # Edit action? Save file.
 #
-    unless ($ENV{'request.state'} eq 'published') {
-	if (($ENV{'form.savethisfile'}) || ($ENV{'form.attemptclean'})) {
-	    if (&storefile($file,$ENV{'form.filecont'})) {
+    unless ($env{'request.state'} eq 'published') {
+	if ($env{'form.savethisfile'}) {
+	    if (&storefile($file,$env{'form.filecont'})) {
 		&Apache::lonxml::info("<font COLOR=\"#0000FF\">".
 				      &mt('Updated').": ".
 				      &Apache::lonlocal::locallocaltime(time).
@@ -1334,66 +1418,64 @@ sub handler {
     my $result = '';
     my $filecontents=&Apache::lonnet::getfile($file);
     if ($filecontents eq -1) {
-	my $bodytag=&Apache::loncommon::bodytag('File Error');
+	my $start_page=&Apache::loncommon::start_page('File Error');
+	my $end_page=&Apache::loncommon::end_page();
 	my $fnf=&mt('File not found');
 	$result=(<<ENDNOTFOUND);
-<html>
-<head>
-<title>$fnf</title>
-</head>
-$bodytag
+$start_page
 <b>$fnf: $file</b>
-</body>
-</html>
+$end_page
 ENDNOTFOUND
         $filecontents='';
-	if ($ENV{'request.state'} ne 'published') {
+	if ($env{'request.state'} ne 'published') {
 	    if ($filetype eq 'sty') {
 		$filecontents=&createnewsty();
 	    } else {
 		$filecontents=&createnewhtml();
 	    }
-	    $ENV{'form.editmode'}='Edit'; #force edit mode
+	    $env{'form.editmode'}='Edit'; #force edit mode
 	}
     } else {
-	unless ($ENV{'request.state'} eq 'published') {
+	unless ($env{'request.state'} eq 'published') {
 	    if ($filecontents=~/BEGIN LON-CAPA Internal/) {
-		&Apache::lonxml::error(&mt('This file appears to be a rendering of a Lon-CAPA resource. If this is correct, this resource will act very oddly and incorrectly.'));
-	    }
-
-	    if ($ENV{'form.attemptclean'}) {
-		$filecontents=&htmlclean($filecontents,1);
+		&Apache::lonxml::error(&mt('This file appears to be a rendering of a LON-CAPA resource. If this is correct, this resource will act very oddly and incorrectly.'));
 	    }
 #
 # we are in construction space, see if edit mode forced
-            &Apache::loncommon::get_unprocessed_cgi
-                          ($ENV{'QUERY_STRING'},['editmode']);
+            &Apache::loncommon::get_unprocessed_cgi($ENV{'QUERY_STRING'},
+						    ['editmode']);
 	}
-	if (!$ENV{'form.editmode'} || $ENV{'form.viewmode'}) {
+	if (!$env{'form.editmode'} || $env{'form.viewmode'}) {
 	    $result = &Apache::lonxml::xmlparse($request,$target,$filecontents,
 						'',%mystyle);
+	    undef($Apache::lonhomework::parsing_a_task);
+	    &Apache::loncommon::get_unprocessed_cgi($ENV{'QUERY_STRING'},
+						    ['rawmode']);
+	    if ($env{'form.rawmode'}) { $result = $filecontents; }
 	}
     }
     
 #
 # Edit action? Insert editing commands
 #
-    unless ($ENV{'request.state'} eq 'published') {
-	if ($ENV{'form.editmode'} && (!($ENV{'form.viewmode'}))) {
+    unless ($env{'request.state'} eq 'published') {
+	if ($env{'form.editmode'} && (!($env{'form.viewmode'}))) {
 	    my $displayfile=$request->uri;
 	    $displayfile=~s/^\/[^\/]*//;
-	    my $bodytag='<body bgcolor="#FFFFFF">';
-	    if ($ENV{'environment.remote'} eq 'off') {
-		$bodytag=&Apache::loncommon::bodytag();
+	    my %options = ();
+	    if ($env{'environment.remote'} ne 'off') {
+		$options{'bgcolor'}   = '#FFFFFF';
 	    }
-	    $result='<html>'.$bodytag.
+	    my $start_page = &Apache::loncommon::start_page(undef,undef,
+							    \%options);
+	    $result=$start_page.
 		&Apache::lonxml::message_location().'<h3>'.
 		$displayfile.
-		'</h3></body></html>';
+		'</h3>'.&Apache::loncommon::end_page();
 	    $result=&inserteditinfo($result,$filecontents,$filetype);
 	}
     }
-    if ($filetype eq 'html') { writeallows($request->uri); }
+    if ($filetype eq 'html') { &writeallows($request->uri); }
 	
     
     &Apache::lonxml::add_messages(\$result);
@@ -1404,10 +1486,10 @@ ENDNOTFOUND
 
 sub display_title {
     my $result;
-    if ($ENV{'request.state'} eq 'construct') {
+    if ($env{'request.state'} eq 'construct') {
 	my $title=&Apache::lonnet::gettitle();
 	if (!defined($title) || $title eq '') {
-	    $title = $ENV{'request.filename'};
+	    $title = $env{'request.filename'};
 	    $title = substr($title, rindex($title, '/') + 1);
 	}
 	$result = "<script type='text/javascript'>top.document.title = '$title - LON-CAPA Construction Space';</script>";
@@ -1419,22 +1501,27 @@ sub debug {
     if ($Apache::lonxml::debug eq "1") {
 	$|=1;
 	my $request=$Apache::lonxml::request;
-	if (!$request) { $request=Apache->request; }
+	if (!$request) {
+	    eval { $request=Apache->request; };
+	}
+	if (!$request) {
+	    eval { $request=Apache2::RequestUtil->request; };
+	}
 	$request->print('<font size="-2"><pre>DEBUG:'.&HTML::Entities::encode($_[0],'<>&"')."</pre></font>\n");
 	#&Apache::lonnet::logthis($_[0]);
     }
 }
 
 sub show_error_warn_msg {
-    if ($ENV{'request.filename'} eq '/home/httpd/html/res/lib/templates/simpleproblem.problem' &&
-	&Apache::lonnet::allowed('mdc',$ENV{'request.course.id'})) {
+    if ($env{'request.filename'} eq '/home/httpd/html/res/lib/templates/simpleproblem.problem' &&
+	&Apache::lonnet::allowed('mdc',$env{'request.course.id'})) {
 	return 1;
     }
     return (($Apache::lonxml::debug eq 1) ||
-	    ($ENV{'request.state'} eq 'construct') ||
+	    ($env{'request.state'} eq 'construct') ||
 	    ($Apache::lonhomework::browse eq 'F'
 	     &&
-	     $ENV{'form.show_errors'} eq 'on'));
+	     $env{'form.show_errors'} eq 'on'));
 }
 
 sub error {
@@ -1451,21 +1538,35 @@ sub error {
 	if ( !$symb ) {
 	    #public or browsers
 	    $errormsg=&mt("An error occured while processing this resource. The author has been notified.");
-	} 
+	}
+	my $host=$Apache::lonnet::perlvar{'lonHostID'};
+	my $msg = join('<br />',(@_,"The occured on host <tt>$host</tt>"));
 	#notify author
-	&Apache::lonmsg::author_res_msg($ENV{'request.filename'},join('<br />',@_));
+	&Apache::lonmsg::author_res_msg($env{'request.filename'},$msg);
 	#notify course
-	if ( $symb && $ENV{'request.course.id'} ) {
+	if ( $symb && $env{'request.course.id'} ) {
+	    my $cnum=$env{'course.'.$env{'request.course.id'}.'.num'};
+	    my $cdom=$env{'course.'.$env{'request.course.id'}.'.domain'};
 	    my (undef,%users)=&Apache::lonfeedback::decide_receiver(undef,0,1,1,1);
-	    my $declutter=&Apache::lonnet::declutter($ENV{'request.filename'});
+	    my $declutter=&Apache::lonnet::declutter($env{'request.filename'});
 	    my @userlist;
 	    foreach (keys %users) {
 		my ($user,$domain) = split(/:/, $_);
 		push(@userlist,"$user\@$domain");
-		&Apache::lonmsg::user_normal_msg($user,$domain,
-						 "Error [$declutter]",join('<br />',@_));
+		my $key=$declutter.'_'.$user.'_'.$domain;
+		my %lastnotified=&Apache::lonnet::get('nohist_xmlerrornotifications',
+						      [$key],
+						      $cdom,$cnum);
+		my $now=time;
+		if ($now-$lastnotified{$key}>86400) {
+		    &Apache::lonmsg::user_normal_msg($user,$domain,
+						 "Error [$declutter]",$msg);
+		    &Apache::lonnet::put('nohist_xmlerrornotifications',
+					 {$key => $now},
+					 $cdom,$cnum);		
+		}
 	    }
-	    if ($ENV{'request.role.adv'}) {
+	    if ($env{'request.role.adv'}) {
 		$errormsg=&mt("An error occured while processing this resource. The course personnel ([_1]) and the author have been notified.",join(', ',@userlist));
 	    } else {
 		$errormsg=&mt("An error occured while processing this resource. The instructor has been notified.");
@@ -1478,10 +1579,8 @@ sub error {
 sub warning {
     $warningcount++;
   
-    if ($ENV{'form.grade_target'} ne 'tex') {
+    if ($env{'form.grade_target'} ne 'tex') {
 	if ( &show_error_warn_msg() ) {
-	    my $request=$Apache::lonxml::request;
-	    if (!$request) { $request=Apache->request; }
 	    push(@Apache::lonxml::warning_messages,
 		 $Apache::lonxml::warnings_error_header.
 		 "<b>W</b>ARNING<b>:</b>".join('<br />',@_)."<br />\n");
@@ -1491,8 +1590,8 @@ sub warning {
 }
 
 sub info {
-    if ($ENV{'form.grade_target'} ne 'tex' 
-	&& $ENV{'request.state'} eq 'construct') {
+    if ($env{'form.grade_target'} ne 'tex' 
+	&& $env{'request.state'} eq 'construct') {
 	push(@Apache::lonxml::info_messages,join('<br />',@_)."<br />\n");
     }
 }
@@ -1643,15 +1742,15 @@ sub helpinfo {
 sub whichuser {
   my ($passedsymb)=@_;
   my ($symb,$courseid,$domain,$name,$publicuser);
-  if (defined($ENV{'form.grade_symb'})) {
+  if (defined($env{'form.grade_symb'})) {
       my ($tmp_courseid)=
 	  &Apache::loncommon::get_env_multiple('form.grade_courseid');
       my $allowed=&Apache::lonnet::allowed('vgr',$tmp_courseid);
       if (!$allowed && 
-	  exists($ENV{'request.course.sec'}) && 
-	  $ENV{'request.course.sec'} !~ /^\s*$/) {
+	  exists($env{'request.course.sec'}) && 
+	  $env{'request.course.sec'} !~ /^\s*$/) {
 	  $allowed=&Apache::lonnet::allowed('vgr',$tmp_courseid.
-					    '/'.$ENV{'request.course.sec'});
+					    '/'.$env{'request.course.sec'});
       }
       if ($allowed) {
 	  ($symb)=&Apache::loncommon::get_env_multiple('form.grade_symb');
@@ -1666,14 +1765,14 @@ sub whichuser {
   } else {
       $symb=$passedsymb;
   }
-  $courseid=$ENV{'request.course.id'};
-  $domain=$ENV{'user.domain'};
-  $name=$ENV{'user.name'};
+  $courseid=$env{'request.course.id'};
+  $domain=$env{'user.domain'};
+  $name=$env{'user.name'};
   if ($name eq 'public' && $domain eq 'public') {
-      if (!defined($ENV{'form.username'})) {
-	  $ENV{'form.username'}.=time.rand(10000000);
+      if (!defined($env{'form.username'})) {
+	  $env{'form.username'}.=time.rand(10000000);
       }
-      $name.=$ENV{'form.username'};
+      $name.=$env{'form.username'};
   }
   return ($symb,$courseid,$domain,$name,$publicuser);
 }