--- doc/loncapafiles/loncapafiles.lpml	2003/02/25 23:03:41	1.219
+++ doc/loncapafiles/loncapafiles.lpml	2004/08/14 01:14:58	1.387
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.219 2003/02/25 23:03:41 albertel Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.387 2004/08/14 01:14:58 raeburn Exp $ -->
 
 <!--
 
@@ -99,6 +99,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0444</chmod><chown dist='default'>root:root</chown>
   <abbreviation>static</abbreviation>
 </category>
+<category name="www static conf" type="runtime">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>static</abbreviation>
+</category>
+<category name="www static conf" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>static</abbreviation>
+</category>
 <category name="conf" type="runtime">
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>configurable</abbreviation>
@@ -365,7 +373,7 @@ Used by lond parent to check if children
 extensions</description>
 </directory>
 <directory dist='default'>
-  <!-- Must protect localauth.pm from extinction. -->
+  <!-- Must protect localauth.pm/localenroll.pm from extinction. -->
   <protectionlevel>weak_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl</targetdir>
   <categoryname>server readonly</categoryname>
@@ -379,6 +387,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lib/perl/Apache/localize</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>location of LON-CAPA MakeText translation files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/HTML</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of HTML specific perl module fixes and additions
@@ -398,6 +412,12 @@ extensions</description>
   <description>cookie jar</description>
 </directory>
 <directory dist='default'>
+   <protectionlevel>modest_delete</protectionlevel>
+ <targetdir dist='default'>home/httpd/scantron</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>uploaded scantron forms directory</description>
+</directory>
+<directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/sockets</targetdir>
   <categoryname>server standard</categoryname>
@@ -441,6 +461,60 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Web directory for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/images</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Images for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/lang</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Language files for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Plugins for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>FullPage plugin for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage/img</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>FullPage plugin for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage/lang</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>FullPage plugin for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage/popups</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>FullPage plugin for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/popups</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Popup windows for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/rat</targetdir>
   <categoryname>server readonly</categoryname>
   <description>home of the rat</description>
@@ -453,6 +527,18 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jme</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JME support files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/helper</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>XML specifications for helpers</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/gif</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation gif files</description>
@@ -471,6 +557,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/tex/ru</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Russian online help documentation tex files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/png</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation png files</description>
@@ -532,6 +624,14 @@ roles.db) which specify the roles and pr
 LON-CAPA system.</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lonCerts</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>
+    Directory for Certificates for SSL and local auth modes
+  </description>
+</directory>
+<directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/MathML</targetdir>
   <categoryname>server readonly</categoryname>
@@ -539,6 +639,13 @@ LON-CAPA system.</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/lib/templates</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Resource library
+  </description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/includes</targetdir>
   <categoryname>server readonly</categoryname>
   <description>files useful for including within customized scripting
@@ -566,6 +673,18 @@ are viewable over the world-wide web</de
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/adm/pages/pt</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>web user interface resources - Portuguese</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>web user interface resources</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonLCDfont</targetdir>
   <categoryname>server readonly</categoryname>
   <description>LCD font for remote control</description>
@@ -613,6 +732,7 @@ are viewable over the world-wide web</de
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
+  <targetdir dist='redhat8 redhat9'>usr/lib/perl5/site_perl/5.8.0</targetdir>
   <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
@@ -771,11 +891,13 @@ well as causing the Apache module to be
 <description>
 Thesaurus database file to be built from loncom/thesaurus/rawkey.txt
 </description>
-<build trigger='run if dependencies change'>
+<build trigger='always run'>
 loncom/thesaurus/build_thesaurus_wrapper.sh
 </build>
 <dependencies>
-rawkey.txt
+rawkey.txt;
+build_thesaurus_db.pl;
+build_thesaurus_wrapper.sh
 </dependencies>
 </file>
 <file>
@@ -812,6 +934,30 @@ parameter.
 </description>
 </file>
 <file>
+<source>loncom/cgi/decompress.pl</source>
+<target dist='default'>home/httpd/cgi-bin/decompress.pl</target>
+<categoryname>script</categoryname>
+<description>
+Decompresses an archive into its files inside of the construction space
+</description>
+</file>
+<file>
+<source>loncom/cgi/takeoffline.pl</source>
+<target dist='default'>home/httpd/cgi-bin/takeoffline.pl</target>
+<categoryname>script</categoryname>
+<description>
+Take machine offline
+</description>
+</file>
+<file>
+<source>loncom/cgi/takeonline.pl</source>
+<target dist='default'>home/httpd/cgi-bin/takeonline.pl</target>
+<categoryname>script</categoryname>
+<description>
+Take machine online
+</description>
+</file>
+<file>
 <source>loncom/cgi/thumbnail.gif</source>
 <target dist='default'>home/httpd/cgi-bin/thumbnail.gif</target>
 <categoryname>script</categoryname>
@@ -828,6 +974,14 @@ utility cgi script to view status of clu
 </description>
 </file>
 <file>
+<source>loncom/cgi/translator.pl</source>
+<target dist='default'>home/httpd/cgi-bin/translator.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to enter translations
+</description>
+</file>
+<file>
 <source>loncom/build/system_dependencies/perltest.pl</source>
 <target dist='default'>home/httpd/cgi-bin/perltest.pl</target>
 <categoryname>script</categoryname>
@@ -844,6 +998,14 @@ utility cgi script to view status of per
 </description>
 </file>
 <file>
+  <source>loncom/cgi/loncgi.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/loncgi.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a common interface to LON-CAPA cookies and environment.
+  </description>
+</file>
+<file>
 <source>loncom/cgi/graph.png</source>
 <target dist='default'>home/httpd/cgi-bin/graph.png</target>
 <categoryname>script</categoryname>
@@ -928,6 +1090,219 @@ out all records in "|"-separated format.
 To be used by very simple harvesting engines.
 </description>
 </file>
+<file>
+<source>loncom/homework/simpleproblem.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/simpleproblem.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for DOCS "Simple Problem"
+</description>
+</file>
+<file>
+<source>loncom/homework/simpleproblem.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/simpleproblem.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for DOCS "Simple Problem"
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/examupload.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/examupload.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for score upload
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/examupload.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/examupload.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for score upload
+</description>
+</file>
+<fileglob>
+<glob>*.js</glob>
+<sourcedir>loncom/html/htmlarea/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+dialog.js;
+htmlarea.js;
+popupdiv.js;
+popupwin.js;
+license.txt
+</filenames>
+</fileglob>
+<file>
+<source>loncom/html/htmlarea/htmlarea.css</source>
+<target dist='default'>home/httpd/html/htmlarea/htmlarea.css</target>
+<categoryname>interface file</categoryname>
+<description>
+Stylesheet for HTMLArea
+</description>
+</file>
+<file>
+<source>loncom/html/htmlarea/plugins/FullPage/full-page.js</source>
+<target dist='default'>home/httpd/html/htmlarea/plugins/FullPage/full-page.js</target>
+<categoryname>interface file</categoryname>
+<description>
+FullPage plugin for HTMLArea
+</description>
+</file>
+<fileglob>
+<glob>*.js</glob>
+<sourcedir>loncom/html/htmlarea/plugins/FullPage/lang/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/plugins/FullPage/lang/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Language files belonging to FullPage plugin for HTMLArea.
+</description>
+<filenames>
+en.js;
+ro.js;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/htmlarea/plugins/FullPage/img/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/plugins/FullPage/img/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Image files belonging to FullPage plugin for HTMLArea.
+</description>
+<filenames>
+docprop.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.html</glob>
+<sourcedir>loncom/html/htmlarea/plugins/FullPage/popups/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/plugins/FullPage/popups/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Popup files belonging to FullPage plugin for HTMLArea.
+</description>
+<filenames>
+docprop.html;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.js</glob>
+<sourcedir>loncom/html/htmlarea/lang/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/lang/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+b5.js;
+de.js;
+fi.js;
+it.js;
+nl.js;
+ro.js;
+vn.js;
+en.js;
+fr.js;
+ja-utf8.js;
+pl.js;
+ru.js;
+da.js;
+es.js;
+gb.js;
+nb.js;
+pt_br.js;
+se.js;
+he.js;
+hu.js;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/htmlarea/popups/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/popups/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+about.html;
+insert_image.html;
+old_insert_image.html;
+blank.html;
+editor_help.html;
+insert_table.html;
+custom2.html;
+fullscreen.html;
+old-fullscreen.html;
+select_color.html;
+popup.js;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/htmlarea/images/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/images/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+ed_left_to_right.gif;
+ed_right_to_left.gif;
+ed_save.gif;
+ed_delete.gif;
+ed_link.gif;
+ed_about.gif;
+ed_format_bold.gif;
+ed_list_bullet.gif;
+ed_align_center.gif;
+ed_format_italic.gif;
+ed_list_num.gif;
+ed_align_justify.gif;
+ed_format_strike.gif;
+ed_paste.gif;
+ed_align_left.gif;
+ed_format_sub.gif;
+ed_redo.gif;
+ed_align_right.gif;
+ed_format_sup.gif;
+ed_show_border.gif;
+ed_blank.gif;
+ed_format_underline.gif;
+ed_splitcel.gif;
+ed_charmap.gif;
+ed_help.gif;
+ed_undo.gif;
+ed_color_bg.gif;
+ed_hr.gif;
+fullscreen_maximize.gif;
+ed_color_fg.gif;
+ed_html.gif;
+fullscreen_minimize.gif;
+ed_copy.gif;
+ed_image.gif;
+insert_table.gif;
+ed_custom.gif;
+ed_indent_less.gif;
+ed_cut.gif;
+ed_indent_more.gif;
+ed_math.gif;
+ed_math_eqn.gif;
+</filenames>
+</fileglob>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/homework/templates/</sourcedir>
@@ -942,12 +1317,21 @@ blank.library;
 blank.library.meta;
 blank.problem;
 blank.problem.meta;
+ClickImageExample.problem;
+ClickImageExample.problem.meta;
 Essay.problem;
 Essay.problem.meta;
+examupload.problem;
+examupload.problem.meta;
+man1.jpg;
+man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
-Plot.problem;
 Plot.problem.meta;
+Plot_curve.problem;
+Plot_curve.problem.meta;
+Plot_data.problem;
+Plot_data.problem.meta;
 RadioResponse.problem;
 RadioResponse.problem.meta;
 RandomLabelExample.problem;
@@ -964,6 +1348,7 @@ SelectFromOptions-8ConceptGoups.problem;
 SelectFromOptions-8ConceptGoups.problem.meta;
 SelectFromOptions-Simple.problem;
 SelectFromOptions-Simple.problem.meta;
+SimpleStringResponse.problem.meta;
 script.library;
 script.library.meta;
 SimpleFormula.problem;
@@ -973,7 +1358,9 @@ StringResponse.problem.meta;
 SimpleMatching.problem;
 SimpleMatching.problem.meta;
 SimpleRank.problem;
-SimpleRank.problem.meta
+SimpleRank.problem.meta;
+SimpleTrueFalse.problem;
+SimpleTrueFalse.problem.meta
 </filenames>
 </fileglob>
 <file>
@@ -997,8 +1384,8 @@ Built from Glabel.java.  Still working o
 </note>
 </file>
 <file>
-<source>loncom/interface/default.assesscalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.assesscalc
+<source>loncom/interface/spreadsheet/default_assesscalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_assesscalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -1006,8 +1393,8 @@ Default spreadsheet for individual asses
 </description>
 </file>
 <file>
-<source>loncom/interface/default.studentcalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.studentcalc
+<source>loncom/interface/spreadsheet/default_studentcalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_studentcalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -1015,8 +1402,8 @@ Default spreadsheet for assessment of st
 </description>
 </file>
 <file>
-<source>loncom/interface/default.classcalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.classcalc
+<source>loncom/interface/spreadsheet/default_classcalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_classcalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -1042,18 +1429,26 @@ and privileges available in the network
 </description>
 </file>
 <file>
+<source>loncom/managers.tab</source>
+<target dist='default'>home/httpd/lonTabs/managers.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+List of machines allowed to pass along updates to hosts.tab and domain.tab
+</description>
+</file>
+<file type="private">
 <source>loncom/hosts.tab</source>
 <target dist='default'>home/httpd/lonTabs/hosts.tab</target>
-<categoryname>static conf</categoryname>
+<categoryname>www static conf</categoryname>
 <description>
 List of all machines in the LON-CAPA network.  Relates <tt>lonHostID</tt> to
 <tt>lonDefDomain</tt> and <u>IP address</u>.
 </description>
 </file>
-<file>
+<file type="private">
 <source>loncom/domain.tab</source>
 <target dist='default'>home/httpd/lonTabs/domain.tab</target>
-<categoryname>static conf</categoryname>
+<categoryname>www static conf</categoryname>
 <description>
 List of all domains in the LON-CAPA network. Lists the name name of the domain and any default authentication.
 </description>
@@ -1081,7 +1476,7 @@ in <tt>access.conf</tt>
 <file>
 <source>loncom/htpasswd</source>
 <target dist='default'>home/httpd/lonTabs/htpasswd</target>
-<categoryname>conf</categoryname>
+<categoryname>static conf</categoryname>
 <description>
 Basic auth password to access /lon-status and /server-status
 </description>
@@ -1130,12 +1525,38 @@ Batch script for removing temporary tabl
 </description>
 </file>
 <file>
-<source>loncom/misc/cleanup_prtspool.pl</source>
-<target dist='default'>home/httpd/perl/cleanup_prtspool.pl</target>
+<source>loncom/metadata_database/parse_activity_log.pl</source>
+<target dist='default'>home/httpd/perl/parse_activity_log.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script to copy activy logs from native format into the SQL metadata database.
+</description>
+</file>
+<file>
+<source>loncom/misc/cleanup_file_caches.pl</source>
+<target dist='default'>home/httpd/perl/cleanup_file_caches.pl</target>
 <categoryname>script</categoryname>
 <description>
 Batch script for removing files not accessed within 24 hours from the 
-/home/httpd/prtspool directory.
+/home/httpd/prtspool and /home/httpd/html/userfiles/ directories.
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/seed_accesscount.pl</source>
+<target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for moving access count data from nohist_resevaldata.db to
+nohist_accesscount.db.
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/modify_config_files.pl</source>
+<target dist='default'>home/httpd/perl/modify_config_files.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script to ensure certain LONCAPA configuration parameters for yum and
+MySQL are included in their configuration files.
 </description>
 </file>
 <file>
@@ -1229,7 +1650,9 @@ echo 'pod2html lond'
 </dependencies>
 </file>
 <file>
-<source>loncom/build/CHECKRPMS</source>
+<source dist='default'>loncom/build/CHECKRPMS.default</source>
+<source dist='fedora1'>loncom/build/CHECKRPMS.fedora</source>
+<source dist='fedora2'>loncom/build/CHECKRPMS.fedora</source>
 <target dist='default'>home/httpd/cgi-bin/CHECKRPMS</target>
 <categoryname>script</categoryname>
 <description>CGI script that checks status of RPMs</description>
@@ -1287,6 +1710,42 @@ echo 'pod2html lonsql'
 </dependencies>
 </file>
 <file>
+  <source>loncom/CrGrant.pl</source>
+  <target dist='default'>home/httpd/perl/CrGrant.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script used to verify and grant an SSL certificate to a Lon-CAPA host
+  </description>
+  <status>in progress</status>
+</file>
+<file>
+  <source>loncom/CrGenerate.pl</source>
+  <target dist='default'>home/httpd/perl/CrGenerate.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script used to request an SSL certificate for a Lon-CAPA host.
+  </description>
+  <status>in progress</status>
+</file>
+<file>
+  <source>loncom/lonManage</source>
+  <target dist='default'>home/httpd/perl/lonManage</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script to push changes to hosts.tab and domain.tab out to Lon-CAPA servers
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/apachereload</source>
+  <target dist='default'>home/httpd/perl/apachereload</target>
+  <categoryname>setuid script</categoryname>
+  <description>
+    Script to let www reload the webserver
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/lcpasswd</source>
 <target dist='default'>home/httpd/perl/lcpasswd</target>
 <categoryname>setuid script</categoryname>
@@ -1406,6 +1865,15 @@ Interface file for responding to imprope
 </description>
 </file>
 <file>
+<source>loncom/html/adm/notinit.html</source>
+<target dist='default'>home/httpd/html/adm/notinit.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Interface file for responding to accessing uploaded resources without
+re-initializing course.
+</description>
+</file>
+<file>
 <source>loncom/html/adm/overloaded.txt</source>
 <target dist='default'>home/httpd/html/adm/overloaded.txt</target>
 <categoryname>interface file</categoryname>
@@ -1448,6 +1916,14 @@ content.
 </description>
 </file>
 <file>
+<source>loncom/homework/scantronformat.tab</source>
+<target dist='default'>home/httpd/lonTabs/scantronformat.tab</target>
+<categoryname>conf</categoryname>
+<description>
+Different configs for scantron input files.
+</description>
+</file>
+<file>
 <source>loncom/publisher/packages.tab</source>
 <target dist='default'>home/httpd/lonTabs/packages.tab</target>
 <categoryname>static conf</categoryname>
@@ -1466,6 +1942,14 @@ Table which contains list of copyright p
 </description>
 </file>
 <file>
+<source>loncom/publisher/source_copyright.tab</source>
+<target dist='default'>home/httpd/html/res/adm/includes/source_copyright.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+Table which contains list of source copyright possibilities for educational resources.
+</description>
+</file>
+<file>
 <source>loncom/publisher/language.tab</source>
 <target dist='default'>home/httpd/lonTabs/language.tab</target>
 <categoryname>static conf</categoryname>
@@ -1538,6 +2022,15 @@ Handler to put up syllabus
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/homework/lonsimpleproblemedit.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsimpleproblemedit.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to set parameters for simple homework problems
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonsimplepage.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsimplepage.pm</target>
 <categoryname>handler</categoryname>
@@ -1547,6 +2040,15 @@ Handler to put up simple page
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/lonpickcode.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpickcode.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler to pick a CODE from the list of possible CODEs
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonpickstudent.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpickstudent.pm</target>
 <categoryname>handler</categoryname>
@@ -1556,6 +2058,15 @@ Handler to pick a student from classlist
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonpickcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a courseid from a list of courses
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonbulletin.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonbulletin.pm</target>
 <categoryname>handler</categoryname>
@@ -1584,6 +2095,48 @@ construction space menu.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/publisher/testbankimport.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/testbankimport.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to convert plain text questions in a testbank file to LON-CAPA problems.
+Called by selecting testbank option when uploading file to construction space.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsimport.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsimport.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to import courses from other CMSs packaged in IMS 1.1 content package
+format into LON-CAPA Construction space.
+Called by selecting IMS package option when uploading file to construction space.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsimportdocs.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsimportdocs.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to import courses from other CMSs packaged in IMS 1.1 content package
+format into a LON-CAPA course via DOCS.
+Called using Import IMS package button displayed in Special documents column in DOCS display.  
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsprocessor.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsprocessor.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains routines used by imsimport handlers when importing contents of IMS 
+packages into construction space, or into a course directly via DOCS.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonhelp.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonhelp.pm</target>
 <categoryname>handler</categoryname>
@@ -1608,6 +2161,14 @@ Index file for the help system
 </description>
 </file>
 <file>
+<source>loncom/html/adm/help/nohelptopic.html</source>
+<target dist='default'>home/httpd/html/adm/help/nohelptopic.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Page of links to help manuals - displayed when inline help is missing for a specific topic.
+</description>
+</file>
+<file>
 <source>doc/help/author.manual.access.tex</source>
 <target dist='default'>home/httpd/html/adm/help/tex/author.manual.access.tex
 </target>
@@ -1630,17 +2191,6 @@ manual online, with a somewhat clumsy in
 <status>works/unverified</status>
 </file>
 <file>
-<source>doc/help/course.instructor.access.tex</source>
-<target dist='default'>home/httpd/html/adm/help/tex/course.instructor.access.tex
-</target>
-<categoryname>interface file</categoryname>
-<description>
-The pseudo-LaTeX file to allow people to read the course instructor's
-manual online, with a somewhat clumsy interface.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>doc/help/author.manual.ps</source>
 <target dist='default'>home/httpd/html/adm/help/author.manual.ps</target>
 <categoryname>interface file</categoryname>
@@ -1699,22 +2249,52 @@ The PDF Course Manual
 <status>works/unverified</status>
 </file>
 <file>
-<source>doc/help/course.instructor.ps</source>
-<target dist='default'>home/httpd/html/adm/help/course.instructor.ps</target>
-<categoryname>interface file</categoryname>
-<description>
-The postscript Course Instructor Manual
-</description>
-<status>works/unverified</status>
+  <source>loncom/html/adm/help/ext_examples.html</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.html</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT in HTML
+  </description>
 </file>
 <file>
-<source>doc/help/course.instructor.pdf</source>
-<target dist='default'>home/httpd/html/adm/help/course.instructor.pdf</target>
-<categoryname>interface file</categoryname>
-<description>
-The PDF Course Instructor Manual
-</description>
-<status>works/unverified</status>
+  <source>loncom/html/adm/help/ext_examples.html.meta</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.html.meta</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT in HTML metadata
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.library</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.library</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT library
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.library.meta</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.library.meta</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT library metadata
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.problem</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.problem</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT problem
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.problem.meta</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.problem.meta</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT problem metadata
+  </description>
 </file>
 <fileglob>
 <glob>*.*</glob>
@@ -1726,6 +2306,19 @@ home/httpd/html/adm/help/gif/</targetdir
 Gif files for the help system
 </description>
 <filenames>
+Authoring_Dynamic_Plot_Axis_Labels.gif;
+Authoring_Dynamic_Plot_Axis_Tics_border.gif;
+Authoring_Dynamic_Plot_Axis_Tics_minor.gif;
+Authoring_Dynamic_Plot_Axis_Tics_nomirror.gif;
+Authoring_Dynamic_Plot_Axis_Tics_x_axis.gif;
+Authoring_Dynamic_Plot_Title_X_Y_Label.gif;
+Dynamic_Replication_Change.gif;
+Dynamic_Replication_Request.gif;
+Load_Balance_Example.gif;
+LONCAPA_Network_Diagram2.gif;
+LONCAPA_Network_Diagram.gif;
+Map_Example.gif;
+Resource_Assembly.gif;
 authorRemote.gif;
 constructionSpace.gif;
 constructionSpaceForPublishing.gif;
@@ -1778,6 +2371,19 @@ home/httpd/html/adm/help/eps/</targetdir
 EPS files for the help system
 </description>
 <filenames>
+Authoring_Dynamic_Plot_Axis_Labels.eps;
+Authoring_Dynamic_Plot_Axis_Tics_border.eps;
+Authoring_Dynamic_Plot_Axis_Tics_minor.eps;
+Authoring_Dynamic_Plot_Axis_Tics_nomirror.eps;
+Authoring_Dynamic_Plot_Axis_Tics_x_axis.eps;
+Authoring_Dynamic_Plot_Title_X_Y_Label.eps;
+Dynamic_Replication_Change.eps;
+Dynamic_Replication_Request.eps;
+Load_Balance_Example.eps;
+LONCAPA_Network_Diagram2.eps;
+LONCAPA_Network_Diagram.eps;
+Map_Example.eps;
+Resource_Assembly.eps;
 authorRemote.eps;
 constructionSpace.eps;
 constructionSpaceForPublishing.eps;
@@ -1831,22 +2437,80 @@ Tex files for the help system
 </description>
 <filenames>
 About_Authors_Manual.tex;
+About_Bombs.tex;
+About_Communication.tex;
+About_Developers_Manual.tex;
 About_Numerical_and_Formula_Response.tex;
+all_functions_table.tex;
+adaptive_hints.tex;
+Additional_Help.tex;
 Ambiguous_Reference.tex;
-Author_LON-CAPA_Introduction.tex;
-Author_Manual_Title_Page.tex;
-Author_Numerical_and_Formula.tex;
-Author_Remote_Control.tex;
+Analysis_Analyze_as.tex;
+Analysis_Analyze_Over.tex;
+Analysis_num_plots.tex;
+Analyze_Problem.tex;
+Annotation.tex;
+Authentication.tex;
 Authoring_Adding_Pictures.tex;
+Authoring_DataResponse.tex;
+Authoring_Dynamic_Plot_Axes.tex;
+Authoring_Dynamic_Plot_Curve_Data.tex;
+Authoring_Dynamic_Plot_Curve_Function.tex;
+Authoring_Dynamic_Plot_Curve.tex;
+Authoring_Dynamic_Plot_Gnuplot.tex;
+Authoring_Dynamic_Plot_Key.tex;
+Authoring_Dynamic_Plot_Label.tex;
+Authoring_Dynamic_Plot_Linestyle.tex;
 Authoring_Dynamic_Plot.tex;
+Authoring_Dynamic_Plot_Tics.tex;
+Authoring_Dynamic_Plot_Title_X_Y_Label.tex;
+Authoring_ExternalResponse.tex;
+Authoring_Foil_Structure_Tags.tex;
+Authoring_Hint_Tags.tex;
 Authoring_HTML_vs_Tex.tex;
+Authoring_ImageResponse.tex;
+Authoring_Input_Tags.tex;
+Authoring_Internal_Tags.tex;
 Authoring_M_Tag.tex;
+Authoring_NumericalResponse.tex;
+Authoring_OptionResponse.tex;
+Authoring_Output_Tags.tex;
+Authoring_Pictures_EPS.tex;
 Authoring_Piecewise_Plot.tex;
+Authoring_RadiobuttonResponse.tex;
+Authoring_Response_Attributes.tex;
+Authoring_Responseparam_Parameter.tex;
+Authoring_Response_Tag_Intro.tex;
+Authoring_Scripting_Tags.tex;
+Authoring_Structure_Tags.tex;
+Authoring_XML_Intro.tex;
+Author_LON-CAPA_Introduction.tex;
+Author_Manual_Title_Page.tex;
+Author_Numerical_and_Formula.tex;
+Author_Remote_Control.tex;
+Bookmarks.tex;
+Bugzilla.tex;
+Caching.tex;
+Calendar_Add_Announcement.tex;
+Calendar_Remove_Announcement.tex;
 Calling_Functions.tex;
+CAPA_LON-CAPA_function_diffs.tex;
+Cascading_Parameters.tex;
+Change_Colors.tex;
+Change_Password.tex;
+Chart_Description.tex;
+Change_Discussion_Display.tex;
+Chart_Output_Data.tex;
+Chart_Output_Formats.tex;
+Chatting.tex;
 Coauthor.tex;
 Construction_Space_Overview.tex;
+Course_Add_Other.tex;
 Course_Add_Student.tex;
+Course_Broadcast_Message.tex;
+Course_Change_Privileges.tex;
 Course_Chart_To_Excel.tex;
+Course_Chat.tex;
 Course_Convert_To_CSV.tex;
 Course_Create_Class_List.tex;
 Course_Critical_Message.tex;
@@ -1855,47 +2519,99 @@ Course_Disable_Discussion.tex;
 Course_Discussion_Board.tex;
 Course_Drop_Student.tex;
 Course_Edit_Content.tex;
+Course_Editing_Custom_Roles.tex;
+Course_Extending_Due_Dates.tex;
+Course_Face_To_Face_Records.tex;
 Course_Feedback_Addresses.tex;
 Course_Homework_Performance_Overview.tex;
+Course_Manually_Grade_Problem.tex;
 Course_Manual_Title_Page.tex;
+Course_Maximum_Collaborators.tex;
 Course_Message_Access.tex;
+Course_Modify_Student_Data.tex;
+Course_Parameter_Levels.tex;
 Course_Problem_Weight.tex;
+Course_Set_Start_End_Date.tex;
 Course_Setting_Parameters.tex;
 Course_Student_Grade_Override.tex;
 Course_Student_Work.tex;
 Course_Toplevel_Seq.tex;
+Course_User_Evaluation.tex;
+Course_User_Parameter.tex;
+Course_View_Class_List.tex;
+Create_Course.tex;
 Creating_A_Course_Intro.tex;
 Creating_New_Content_Pages.tex;
 Creating_Online_Problems.tex;
 Creating_Radio_Response_Problems.tex;
+Developer_Manual_Title_Page.tex;
+Developer_Tutorial.tex;
+Docs_About_Bulletin_Board.tex;
+Docs_About_My_Personal_Info.tex;
+Docs_About_Simple_Page.tex;
+Docs_About_Syllabus.tex;
 Docs_Adding_Course_Doc.tex;
 Docs_Adding_External_Resource.tex;
 Docs_Adding_Folders.tex;
+Docs_Adding_Syllabus.tex;
+Docs_Alternatives.tex;
+Docs_Check_Resource_Versions.tex;
 Docs_Creating_From_Template.tex;
+Docs_Dump_Course_Docs.tex;
+Docs_Editing_Templated_Pages.tex;
+Docs_Essay.tex;
 Docs_Importing_LON-CAPA_Resource.tex;
+Docs_Load_Map.tex;
 Docs_Main_Course_Documents.tex;
 Docs_Navigate_Content.tex;
+Docs_Option_Response.tex;
 Docs_Overview.tex;
+Docs_Radio.tex;
+Docs_Score_Upload_Form.tex;
+Docs_Search.tex;
+Docs_Simple_Problem.tex;
+Docs_String_Response.tex;
 Docs_Supplemental.tex;
 Docs_Uploading_From_Harddrive.tex;
+Docs_Verify_Content.tex;
+Edit_Syllabus.tex;
+exam_basics.tex;
+Exploring_Your_Course.tex;
+Finding_Resources.tex;
 Foils.tex;
+Formula_Response_Adv_Intro.tex;
 Formula_Response_Example.tex;
 Formula_Response_Limitations.tex;
 Formula_Response_Problems.tex;
 Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
 General_Intro.tex;
+Generation.tex;
+GradingOptions.tex;
 Greek_Symbols.tex;
+Guts_Apache_Env.tex;
+Guts_Apache_Modules.tex;
+Guts_Apache.tex;
+Guts_Authentication.tex;
+Guts_Authoring.tex;
+Guts_Coding_Guidelines.tex;
+Guts_Course_Dir.tex;
+Guts_User_Dir.tex;
+Help.tex;
+Helper_Course_Initialization.tex;
 How_To_Edit_Existing_Content_Pages.tex;
 Latex_Footer.tex;
 Latex_Header.tex;
+Leaving_Feedback.tex;
 Login_To_LON-CAPA.tex;
 Metadata_Description.tex;
+Navigation_Screen.tex;
 Navmap_Host_Down.tex;
+NavMaps_MarkPosts_Read.tex;
 Numerical_Response_Advanced_Example.tex;
 Numerical_Response_Format.tex;
-Numerical_Response_Intro.tex;
 Numerical_Response_Introduction.tex;
+Numerical_Response_Intro.tex;
 Numerical_Response_Parts_A.tex;
 Numerical_Response_Parts_B.tex;
 Numerical_Response_Problems.tex;
@@ -1903,6 +2619,7 @@ Numerical_Response_Randomization.tex;
 Numerical_Response_Simple_Example.tex;
 Numerical_Response_Tutorial_A.tex;
 Numerical_Response_Units.tex;
+numerical_wrong_answers.tex;
 Option_Response_Concept_Group_Example.tex;
 Option_Response_Matching_Example.tex;
 Option_Response_Problem_Creation.tex;
@@ -1912,8 +2629,16 @@ Option_Response_Problems.tex;
 Option_Response_Simple.tex;
 Other_Symbols.tex;
 Part_Tag_Edit_Help.tex;
+Personal_Info_Page.tex;
+Physical_Units.tex;
+Prefs_About_Me.tex;
+Prefs_Forwarding.tex;
+Prefs_Language.tex;
+Prefs_Screen_Name_Nickname.tex;
+Print_Resource.tex;
 Problem_Editor_Testing_Area.tex;
 Problem_Editor_XML_Index.tex;
+Problem_LON-CAPA_Functions.tex;
 Problem_Types.tex;
 Publishing_A_Resource.tex;
 Publishing_Author_Tutorial_Segue.tex;
@@ -1923,9 +2648,21 @@ Publishing_Keywords.tex;
 Quick_Grades_Possibly_Correct.tex;
 Radio_Response_Problems.tex;
 Radio_Response_Randomization.tex;
+Ranking_Problems.tex;
+Receipt.tex;
+Remote_Menu.tex;
+Resource_Discussion.tex;
 Resource_Types.tex;
-Script_Tutorial_Intro.tex;
+Roles_About.tex;
+Roles_Screen.tex;
+Script_Functions.tex;
 Scripting_Help.tex;
+Script_Tutorial_Intro.tex;
+Script_Variables.tex;
+Search_Advanced.tex;
+Search_Basic.tex;
+Searching.tex;
+Sending_Email.tex;
 Sequence_Advanced_Editor_Creation.tex;
 Sequence_Definition.tex;
 Sequence_Editor_Selection.tex;
@@ -1934,36 +2671,70 @@ Sequence_Simple_Editor_Creation.tex;
 Sequence_Top-Level.tex;
 Significant_Figures.tex;
 Spreadsheet_About.tex;
-Spreadsheet_Alternative_View.tex;
-Spreadsheet_Changes_To_Grading.tex;
-Spreadsheet_Col_Sum.tex;
-Spreadsheet_Completely_Recalc.tex;
-Spreadsheet_Empty_Rows.tex;
+Spreadsheet_Calculation.tex;
+Spreadsheet_Calculation_Time.tex;
+Spreadsheet_Cell_Editing.tex;
+Spreadsheet_Editing.tex;
 Spreadsheet_Export_Row.tex;
+Spreadsheet_Files.tex;
 Spreadsheet_Functions.tex;
-Spreadsheet_Import_Values.tex;
+Spreadsheet_Hierarchy.tex;
+Spreadsheet_HowTo_Assessments.tex;
+Spreadsheet_HowTo.tex;
+Spreadsheet_Layout.tex;
 Spreadsheet_Levels.tex;
-Spreadsheet_Lists.tex;
 Spreadsheet_Max_Depth_Exceeded.tex;
-Spreadsheet_OOO_Rows.tex;
-Spreadsheet_Op_On_All_Problem_Parts.tex;
 Spreadsheet_Parms.tex;
 Spreadsheet_Problem_Weight.tex;
-Spreadsheet_Ranges.tex;
-Spreadsheet_Specifying_Cells.tex;
+Spreadsheet_Referencing_Cells.tex;
+Spreadsheet_Referencing_Parameters.tex;
+Spreadsheet_Row_Numbers.tex;
+Spreadsheet_Student_View.tex;
 Spreadsheet_Student_Visible.tex;
-Spreadsheet_Symbolic_Names.tex;
 Spreadsheet_Template_Row.tex;
 Spreadsheet_Ternary_Operator.tex;
 Spreadsheet_Tries.tex;
+Statistics_Overall_Key.tex;
+Statistics_Sequence.tex;
+Statistics_Cache.tex;
 String_Response_Problem_Creation.tex;
 String_Response_Problems.tex;
+Syllabus_ExtLink.tex;
+Syllabus_URLs.tex;
 Tolerance.tex;
+Uploaded_Templates_PublicView.tex;
+Uploaded_Templates_TextBoxes.tex;
 Variable_Naming_Conventions.tex;
-Variable_Tutorial_A.tex;
 Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
-Variables_in_the_Text_Block.tex
+Variables_in_the_Text_Block.tex;
+Variable_Tutorial_A.tex;
+What_Is_LON-CAPA.tex;
+Why_LON-CAPA.tex;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/tex/ru/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/tex/ru/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Russian Tex files for the help system
+</description>
+<filenames>
+About_Authors_Manual.tex;
+About_Communication.tex;
+About_Developers_Manual.tex;
+About_Numerical_and_Formula_Response.tex;
+CAPA_LON-CAPA_function_diffs.tex;
+Course_Maximum_Collaborators.tex;
+Course_Set_Start_End_Date.tex;
+Creating_A_Course_Intro.tex;
+Other_Symbols.tex;
+Physical_Units.tex;
+Print_Resource.tex;
+Authoring_Adding_Pictures.tex;
 </filenames>
 </fileglob>
 <file>
@@ -1985,6 +2756,15 @@ Handler to show statistics on solving LO
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/statistics/lonstathelpers.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstathelpers.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility module for statistics and data mining.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/statistics/lonproblemstatistics.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonproblemstatistics.pm
 </target>
@@ -1992,6 +2772,33 @@ Handler to show statistics on solving LO
 <description>
 The module that generate the html for the Problem Statistics web pages.
 </description>
+</file>
+<file>
+<source>loncom/interface/statistics/lonsurveyreports.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsurveyreports.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+Gives instructors access to compiled survey results.
+</description>
+</file>
+<file>
+<source>loncom/interface/statistics/lonstudentsubmissions.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstudentsubmissions.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+Generates excel file containing student submissions and correct answers.
+</description>
+</file>
+<file>
+<source>loncom/interface/statistics/loncorrectproblemplot.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncorrectproblemplot.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the correct problems plot web pages.
+</description>
 <status>works/unverified</status>
 </file>
 <file>
@@ -2010,7 +2817,17 @@ The module that generate the html for th
 </target>
 <categoryname>handler</categoryname>
 <description>
-The module that generate the html for the Problem Analysis web pages.
+This module provides detailed analysis and raw data for submissions of various problem types.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonsubmissiontimeanalysis.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsubmissiontimeanalysis.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+This module produces plots of the times of students attempts on an assessment.
 </description>
 <status>works/unverified</status>
 </file>
@@ -2034,6 +2851,15 @@ Handler to show difference between two f
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/publisher/lonrights.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrights.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to show and edit custom distribution rights
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/lonupload.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonupload.pm</target>
 <categoryname>handler</categoryname>
@@ -2287,6 +3113,51 @@ Contains a set of functions that generat
 </description>
 </file>
 <file>
+<source>loncom/interface/lonspeller.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonspeller.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains a set of functions to use Aspell
+</description>
+</file>
+<file>
+<source>loncom/localize/lonlocal.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonlocal.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains the &mt access function to Locale::Maketext
+</description>
+</file>
+<file>
+<source>loncom/localize/localize.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/localize.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Localization class for Locale::Maketext
+</description>
+</file>
+<fileglob>
+<glob>*.pm</glob>
+<sourcedir>loncom/localize/localize/</sourcedir>
+<targetdir dist='default'>
+home/httpd/lib/perl/Apache/localize/</targetdir>
+<categoryname>static conf</categoryname>
+<description>
+Translation files.
+</description>
+<filenames>
+de.pm;
+pt.pm;
+fr.pm;
+ja.pm;
+tr.pm;
+ru.pm;
+fa.pm;
+ar.pm;
+es.pm;
+</filenames>
+</fileglob>
+<file>
 <source>loncom/interface/loncoursedata.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncoursedata.pm</target>
 <categoryname>handler</categoryname>
@@ -2366,6 +3237,43 @@ assignment.
 </description>
 <status>works/unverified</status>
 </file>
+
+<file>
+  <source>loncom/homework/chemresponse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/chemresponse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handle the tags organicresponse/structure and reationresponse
+  </description>
+  <status>works/unverified</status>
+</file>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jme/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jme/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JME files, for editing organic structures
+  </description>
+  <filenames>
+JME.jar;
+jme.gif;
+jme_help.html;
+nitro.gif;
+smiles.gif
+  </filenames>
+</fileglob>
+
+<file>
+  <source>loncom/homework/convertjme.pl</source>
+  <target dist='default'>home/httpd/cgi-bin/convertjme.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Dynamically converts JME strings into either a png or ps file.
+  </description>
+</file>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -2444,11 +3352,60 @@ Handles navigational maps.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonwizard.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonwizard.pm</target>
+<source>doc/man/Apache__lonnavmaps.3</source>
+<target dist='default'>usr/man/man3/Apache::lonnavmaps.3</target>
+<categoryname>doc</categoryname>
+<description>man page for lonnavmaps.pm</description>
+<build trigger='always run'>
+loncom/build/pod2man.sh ../../loncom/interface/lonnavmaps.pm &gt; \
+../../doc/man/Apache__lonnavmaps.3 &amp;&amp; echo 'manifying lonnavmaps.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/interface/lonnavmaps.pm
+</dependencies>
+</file>
+<file>
+<source>doc/lib/perl/Apache/lonnavmaps.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonnavmaps.html
+</target>
+<categoryname>doc</categoryname>
+<description>POD-derived page for lonnavmaps.pm</description>
+<build trigger='always run'>
+loncom/build/pod2html.sh ../../loncom/interface/lonnavmaps.pm &gt; \
+../../doc/lib/perl/Apache/lonnavmaps.html &amp;&amp; \
+echo 'pod2html lonnavmaps.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/interface/lonnavmaps.pm
+</dependencies>
+</file>
+<file>
+<source>loncom/interface/lonhelper.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhelper.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Helper framework.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/helper/parameter.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/parameter.helper</target>
+<categoryname>handler</categoryname>
+<description>
+Parameter setting helper.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/helper/course.initialization.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/course.initialization.helper</target>
 <categoryname>handler</categoryname>
 <description>
-Wizard framework.
+Course initialization helper.
 </description>
 <status>works/unverified</status>
 </file>
@@ -2481,6 +3438,14 @@ Handles the production of printable file
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/metadata_database/LONCAPA/lonmetadata.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonmetadata.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a common interface to LON-CAPA metadata.
+  </description>
+</file>
+<file>
 <source>loncom/interface/lonsearchcat.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsearchcat.pm</target>
 <categoryname>handler</categoryname>
@@ -2530,6 +3495,15 @@ echo 'pod2html lonsearchcat.pm'
 </dependencies>
 </file>
 <file>
+<source>loncom/interface/lonmanagekeys.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonmanagekeys.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows users with "mky" privileges to generate and manage course access keys.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/londropadd.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londropadd.pm</target>
 <categoryname>handler</categoryname>
@@ -2541,6 +3515,15 @@ role of student in a course, and add the
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonviewclasslist.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonviewclasslist.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows users (including students) to view the classlist of their course.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonmsg.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonmsg.pm</target>
 <categoryname>handler</categoryname>
@@ -2566,13 +3549,49 @@ problems and assignments.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonspreadsheet.pm</source>
+<source>loncom/interface/spreadsheet/lonspreadsheet.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonspreadsheet.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Spreadsheets are completely web-based.
-They exist on the level of a whole course, a student, and individual
-assessments.
+The top level interface for the display and editing of spreadsheets.  There
+are three levels of spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/Spreadsheet.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/Spreadsheet.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the parent object of each spreadsheet type (classcalc, studentcalc,
+assesscalc).
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/classcalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/classcalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the course level spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/studentcalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/studentcalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the student level spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/assesscalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/assesscalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the assessment level spreadsheet.
 </description>
 <status>works/unverified</status>
 </file>
@@ -2675,6 +3694,24 @@ Has routines which control the remote co
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonremote.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonremote.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to launch and collapse the remote control.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/portfolio.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/portfolio.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to manage user portfolios
+</description>
+<status>unverified</status>
+</file>
+<file>
 <source>rat/lonpageflip.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpageflip.pm</target>
 <categoryname>handler</categoryname>
@@ -2890,6 +3927,15 @@ implements &lt;script&gt;, &lt;scriptlib
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/languagetags.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/languagetags.pm</target>
+<categoryname>handler</categoryname>
+<description>
+implements &lt;mt&gt;
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/homework/randomlylabel.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/randomlylabel.pm</target>
 <categoryname>handler</categoryname>
@@ -2898,6 +3944,22 @@ Handler for compositing images, and text
 </description>
 </file>
 <file>
+<source>loncom/homework/drawimage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/drawimage.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for programtically defining an image
+</description>
+</file>
+<file>
+<source>loncom/homework/imagechoice.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imagechoice.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for picking out locations on an image.
+</description>
+</file>
+<file>
 <source>loncom/homework/rankresponse.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/rankresponse.pm</target>
 <categoryname>handler</categoryname>
@@ -2981,15 +4043,24 @@ a way that does not threaten the operati
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/auth/localauth.pm</source>
-<target dist='default'>home/httpd/lib/perl/localauth-std.pm</target>
-<categoryname>handler</categoryname>
-<description>
+  <source>loncom/auth/localauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localauth-std.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
 Local authentication mechanism.  The target file is meant as a template
 for a localauth.pm file.  The target file with the -std suffix is not
 used directly by any software program; it is just a template file.
-</description>
-<status>works/unverified</status>
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/localauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localauth.pm</target>
+  <categoryname>conf</categoryname>
+  <description>
+Local authentication mechanism.  
+  </description>
+  <status>works/unverified</status>
 </file>
 <file>
 <source>loncom/auth/lonacc.pm</source>
@@ -3070,6 +4141,15 @@ URI to filename translation
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/lonenc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonenc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Encryption and decryption of URIs
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonracc.3</source>
 <target dist='default'>usr/man/man3/Apache::lonracc.3</target>
 <categoryname>doc</categoryname>
@@ -3160,6 +4240,13 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/londatecheck.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/londatecheck.pm</target>
+<categoryname>handler</categoryname>
+<description>Checks contentopen/close settings disable subsequent PerlHandlers if not open</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonlogout.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonlogout.pm</target>
 <categoryname>handler</categoryname>
@@ -3173,6 +4260,12 @@ loncom/build/pod2html.sh ../auth/loncacc
 <description>replication</description>
 </file>
 <file>
+<source>loncom/lonnet/perl/lonuploadrep.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonuploadrep.pm</target>
+<categoryname>handler</categoryname>
+<description>copying of uploaded files</description>
+</file>
+<file>
 <source>loncom/auth/lonroles.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonroles.pm</target>
 <categoryname>handler</categoryname>
@@ -3216,6 +4309,15 @@ loncom/build/pod2html.sh ../auth/lonrole
 </dependencies>
 </file>
 <file>
+<source>loncom/interface/lonsource.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsource.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Problem source code viewer
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonindexer.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonindexer.pm</target>
 <categoryname>handler</categoryname>
@@ -3318,6 +4420,12 @@ loncom/build/pod2html.sh ../lonnet/perl/
 <description>bumps to login</description>
 </file>
 <file>
+<source>loncom/html/index.html</source>
+<target dist='default'>home/httpd/html/origindex.html</target>
+<categoryname>interface file</categoryname>
+<description>bumps to login, backup for takeonline</description>
+</file>
+<file>
 <source>loncom/html/favicon.ico</source>
 <target dist='default'>home/httpd/html/favicon.ico</target>
 <categoryname>interface file</categoryname>
@@ -3573,14 +4681,28 @@ logos and general widget icons
 <filenames>
 SMETE_white.gif;
 aboutlon.gif;
+aboutlon_pt.gif;
+aboutlon_de.gif;
 accessbutton.gif;
+accessbutton_pt.gif;
+accessbutton_de.gif;
+angry.gif;
 arrow_up.gif;
+baeh.gif;
+bigsmile.gif;
 branch.gif;
 cab.gif;
 cab_big.gif;
 capapanel.gif;
+check.gif;
 class.gif;
 class_big.gif;
+closepage.gif;
+coolindiff.gif;
+coolsmile.gif;
+cry.gif;
+doc.gif;
+doc_big.gif;
 dvi.gif;
 dvi_big.gif;
 eps.gif;
@@ -3597,17 +4719,24 @@ folder_pointer_closed.gif;
 folder_pointer_opened.gif;
 form.gif;
 form_big.gif;
+frowny.gif;
 gif.gif;
 gif_big.gif;
 header.gif;
+helpdesk.gif;
+helpgateway.gif;
+hrrm.gif;
 htm.gif;
 html.gif;
 html_big.gif;
+huh.gif;
 jar.gif;
 jar_big.gif;
 jpg.gif;
 jpg_big.gif;
 latex.gif;
+library.gif;
+lipsrsealed.gif;
 lite.gif;
 liteani.gif;
 litetext.gif;
@@ -3621,6 +4750,9 @@ lonlogo.gif;
 lonlogos.gif;
 lowerleft.gif;
 lowerright.gif;
+mailbkgrd.gif;
+mailto.gif;
+minilogo.gif;
 meta.gif;
 meta_big.gif;
 mov.gif;
@@ -3628,20 +4760,31 @@ mov_big.gif;
 move_up.gif;
 move_down.gif;
 navmap.correct.gif;
+navmap.ellipsis.gif;
 navmap.open.gif;
+navmap.page.open.gif;
+navmap.page.closed.gif;
+navmap.page.open.nomanip.gif;
+navmap.page.closed.nomanip.gif;
 navmap.wrong.gif;
 navmap.folder.open.gif;
 navmap.folder.closed.gif;
+navmap.folder.open.nomanip.gif;
+navmap.folder.closed.nomanip.gif;
+neutral.gif;
 page.gif;
 page_big.gif;
 pdf.gif;
 pdf_big.gif;
 png.gif;
 png_big.gif;
+ppt.gif;
+ppt_big.gif;
 problem.gif;
 problem_big.gif;
 ps.gif;
 ps_big.gif;
+rolleyes.gif;
 quill.gif;
 quiz.gif;
 quiz_big.gif;
@@ -3650,6 +4793,8 @@ sequence.gif;
 sequence_big.gif;
 server.gif;
 server_big.gif;
+shocked.gif;
+smiley.gif;
 srvbad.gif;
 srvempty.gif;
 srvgood.gif;
@@ -3669,6 +4814,8 @@ upperright.gif;
 user.gif;
 user_big.gif;
 userauthentication.gif;
+userauthentication_pt.gif;
+userauthentication_de.gif;
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
@@ -3682,6 +4829,9 @@ whitespace6.gif;
 whitespace7.gif;
 whitespace8.gif;
 whitespace9.gif;
+wink.gif;
+xls.gif;
+xls_big.gif;
 xml.gif;
 xml_big.gif;
 zip.gif;
@@ -3698,7 +4848,10 @@ Miscellaneous resources.
 </description>
 <filenames>
 authorfeed.gif;
+blackdot.gif;
 bomb.gif;
+smallFAQ.gif;
+smallBug.gif;
 cat_button.gif;
 chat.gif;
 eval_button.gif;
@@ -3709,9 +4862,9 @@ subm_button.gif
 </filenames>
 </fileglob>
 <file>
-<source>loncom/xml/tth.pm</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/tth.pm</target>
+<source>modules/TexConvert/tthperl/tth.pm</source>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/tth.pm</target>
+<target dist='default'>home/httpd/lib/perl/tth.pm</target>
 <categoryname>system file</categoryname>
 <description>
 perl module for invoking functions specific to TeX-to-HTML conversion
@@ -3735,6 +4888,80 @@ tested
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/lonlocal.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonlocal.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     lonc/d handler for doing a local filesystem based init:
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+  <source>loncom/lonssl.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonssl.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     lonc/d handler for doing a remote SSL based init:
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+  <source>loncom/LondConnection.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LondConnection.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     Manages a connection between a lonc proxy daemon and the lond server
+     in the remote node.
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+  <source>loncom/LondTransaction.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LondTransaction.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+	Handles a single lon-capa insternal transaction
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/HashIterator.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/HashIterator.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+      Provides support to iterate through opaque hashes hidden e.g. within 
+      object private data.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/Queue.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/Queue.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+     Provides a FIFO queue class.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/Stack.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/Stack.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+     Provides a LIFO stack class.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/loncnew</source>
+   <target dist='default'>home/httpd/perl/loncnew</target>
+   <categoryname>script</categoryname>
+   <description>
+	  Proxy server for remote loncapa requests.
+          Needs CPAN Event module.
+   </description>
+</file>
+<file>
 <source>loncom/configuration/Configuration.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/Configuration.pm</target>
 <categoryname>system file</categoryname>
@@ -3746,9 +4973,18 @@ entries.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/ConfigFileEdit.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Configuration file editing module
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>modules/TexConvert/tthperl/tth.so</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/tth.so</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/tth.so</target>
+<target dist='default'>home/httpd/lib/perl/tth.so</target>
 <categoryname>system file</categoryname>
 <description>
 shared library file for dynamic loading and unloading
@@ -3763,15 +4999,15 @@ related to this file during the build pr
 modules/TexConvert/tthperl/commands
 </build>
 <status>works/unverified</status>
-<dependencies>
+<privatedependencies>
 ../tthdynamic/tthfunc.c;
 ../ttmdynamic/ttmfunc.c
-</dependencies>
+</privatedependencies>
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.pm</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.pm</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.pm</target>
+<target dist='default'>home/httpd/lib/perl/capa.pm</target>
 <categoryname>system file</categoryname>
 <description>
 perl module for invoking functions specific to CAPA
@@ -3785,8 +5021,8 @@ the build process however.
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.bs</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.bs</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.bs</target>
+<target dist='default'>home/httpd/lib/perl/capa.bs</target>
 <categoryname>system file</categoryname>
 <description>
 bootstrap file associated with dynamic loading of this module on multiple
@@ -3801,8 +5037,8 @@ the build process however.
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.so</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.so</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.so</target>
+<target dist='default'>home/httpd/lib/perl/capa.so</target>
 <categoryname>system file</categoryname>
 <description>
 shared library file for dynamic loading and unloading
@@ -3817,6 +5053,7 @@ README;
 Makefile.PL;
 capa.i;
 commands;
+../../../CAPA/pProj/Makefile;
 ../../../CAPA/pProj/capaGrammarDef.y;
 ../../../CAPA/pProj/capaFormula.y;
 ../../../CAPA/pProj/capaLexerDef.flex;
@@ -3945,11 +5182,21 @@ student.jpg;
 </filenames>
 </fileglob>
 <fileglob>
+<glob>*.jpg</glob>
+<sourcedir>loncom/html/adm/lonDomLogos/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonDomLogos/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Logos of LON-CAPA domains (jpg)</description>
+<filenames>
+headermsu.jpg;
+</filenames>
+</fileglob>
+<fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/adm/lonDomLogos/</sourcedir>
 <targetdir dist='default'>home/httpd/html/adm/lonDomLogos/</targetdir>
 <categoryname>graphic file</categoryname>
-<description>Logos of LON-CAPA domains</description>
+<description>Logos of LON-CAPA domains (gif)</description>
 <filenames>
 103.gif;
 gerd.gif;
@@ -3980,7 +5227,29 @@ nsdl.gif;
 pmm.gif;
 sunysb.gif;
 udel.gif;
-uz.gif
+uz.gif;
+fvl.gif;
+csm.gif;
+nau.gif;
+nagoya.gif;
+colorado.gif;
+acadiau.gif;
+psuerie.gif;
+redford.gif;
+huji.gif;
+ifusp.gif;
+ucsc.gif;
+waverly.gif;
+cmich.gif;
+UNICAMP.gif;
+lakefenton.gif;
+grandblanc.gif;
+glps.gif;
+BCHS.gif;
+headersfu.gif;
+uwsp.gif;
+bsu.gif;
+wmston.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -3993,8 +5262,24 @@ uz.gif
 annarbor.tab;
 default.tab;
 msu.tab;
+csm.tab;
+huji.tab;
+nau.tab;
+nagoya.tab;
+colorado.tab;
+acadiau.tab;
+psuerie.tab;
+redford.tab;
+cmich.tab;
+ifusp.tab;
+ucsc.tab;
+UNICAMP.tab;
+lakefenton.tab;
+grandblanc.tab;
+fsu.tab;
 sfu.tab;
-worf.tab
+wmston.tab;
+worf.tab;
 </filenames>
 </fileglob>
 <fileglob>
@@ -4040,6 +5325,12 @@ w.gif;
 x.gif;
 y.gif;
 z.gif;
+ö.gif;
+ä.gif;
+ü.gif;
+ä.gif;
+ö.gif;
+ü.gif;
 colon.gif;
 hyphen.gif;
 slash.gif;
@@ -4048,6 +5339,45 @@ space.gif;
 </fileglob>
 <fileglob>
 <glob>*.gif</glob>
+<sourcedir>loncom/html/res/adm/pages/pt/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/pt/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>icons used for the Portuguese LON-CAPA user interface</description>
+<filenames>
+anno_pt.gif;
+anot_pt.gif;
+bchat_pt.gif;
+catalog_pt.gif;
+ccrs_pt.gif;
+chrt_pt.gif;
+com_pt.gif;
+courses_pt.gif;
+cprv_pt.gif;
+cstr_pt.gif;
+docs_pt.gif;
+egrd_pt.gif;
+enrl_pt.gif;
+eval_pt.gif;
+fdbk_pt.gif;
+grds_pt.gif;
+keys_pt.gif;
+logout_pt.gif;
+nav_pt.gif;
+parm_pt.gif;
+pref_pt.gif;
+prt_pt.gif;
+res_pt.gif;
+roles_pt.gif;
+sbkm_pt.gif;
+spacer_pt.gif;
+sprs_pt.gif;
+src_pt.gif;
+stat_pt.gif;
+vbkm_pt.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
 <categoryname>graphic file</categoryname>
@@ -4058,6 +5388,15 @@ anot.gif;
 back.gif;
 bchat.gif;
 bkm.gif;
+bl_step1.gif;
+bl_step2.gif;
+bl_step3.gif;
+bl_step4.gif;
+bl_step5.gif;
+bl_step6.gif;
+bl_step7.gif;
+bl_step8.gif;
+bl_step9.gif;
 brws.gif;
 catalog.gif;
 ccrs.gif;
@@ -4080,12 +5419,14 @@ grds.gif;
 group.gif;
 help.gif;
 info.gif;
+keys.gif;
 ledblink.gif;
 ledgreen.gif;
 ledoff.gif;
 ledon.gif;
 ledsend.gif;
 logout.gif;
+mcrs.gif;
 mrk.gif;
 nav.gif;
 next.gif;
@@ -4286,6 +5627,22 @@ blank.html;
 closechildren.html
 </filenames>
 </fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/res/adm/pages/reactionresponse/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Associated file for answering reactionresponse style questions
+</description>
+<filenames>
+reaction_editor.html;
+reaction_frame.html;
+reaction_help.html;
+reaction_viewer.html;
+reaction_window.html
+</filenames>
+</fileglob>
 <file>
 <source>loncom/html/res/adm/pages/bookmarkmenu/bookmarklib.js</source>
 <target dist='default'>
@@ -4296,7 +5653,9 @@ javascript for handling client-side inte
 </description>
 </file>
 <file>
-<source>loncom/build/CHECKRPMS</source>
+<source dist='default'>loncom/build/CHECKRPMS.default</source>
+<source dist='fedora1'>loncom/build/CHECKRPMS.fedora</source>
+<source dist='fedora2'>loncom/build/CHECKRPMS.fedora</source>
 <target dist='default'>usr/local/loncapa/bin/CHECKRPMS</target>
 <categoryname>system script</categoryname>
 <description>
@@ -4354,12 +5713,19 @@ schemes of settings-updating and file-ov
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/cron/loncapa</source>
-<target dist='default'>etc/cron.d/loncapa</target>
-<categoryname>static conf</categoryname>
-<description>
-file that specifies periodic processes to run for the LON-CAPA machine
-</description>
+  <source>loncom/cron/loncapa.built</source>
+  <target dist='default'>etc/cron.d/loncapa</target>
+  <categoryname>conf</categoryname>
+  <description>
+    file that specifies periodic processes to run for the LON-CAPA machine
+  </description>
+  <build trigger='always run'>
+loncom/cron/preserve_local_loncapa_cron
+  </build>
+  <dependencies>
+loncapa;
+preserve_local_loncapa_cron
+  </dependencies>
 </file>
 <file>
 <source>loncom/ntp/step-tickers</source>
@@ -4423,5 +5789,70 @@ configuration file to make LON-CAPA serv
 Appleshares access (Macintosh)
 </description>
 </file>
+<file>
+  <source>loncom/interface/lonhelpmenu.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonhelpmenu.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Creates a multipage help screen to help users out.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonsupportreq.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonsupportreq.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler to make it easy for users to send a request to te helpdesk
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonmodifycourse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmodifycourse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface to modifying a course's internal ENV values for automated
+    enrollement
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpopulate.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpopulate.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for configuring automated enrollment
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/Enrollment.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/Enrollment.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for automated enrollment
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/localenroll.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localenroll.pm</target>
+  <categoryname>conf</categoryname>
+  <description>
+    Local handler for automated enrollment.
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/localenroll.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localenroll-std.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Local handler for automated enrollment, standard version.
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/Autoenroll.pl</source>
+  <target dist='default'>home/httpd/perl/Autoenroll.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Local handler for automated enrollment, standard version.
+  </description>
+</file>
 </files>
 </lpml>