--- doc/loncapafiles/loncapafiles.lpml	2009/03/27 05:13:08	1.637
+++ doc/loncapafiles/loncapafiles.lpml	2012/02/08 13:54:45	1.675.4.39.2.4
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.637 2009/03/27 05:13:08 raeburn Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.675.4.39.2.4 2012/02/08 13:54:45 raeburn Exp $ -->
 
 <!--
 
@@ -98,6 +98,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>configurable</abbreviation>
 </category>
+<category name="www conf" type="runtime">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>configurable</abbreviation>
+</category>
+<category name="www conf" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>configurable</abbreviation>
+</category>
 <category name="script" type="runtime">
   <chmod dist='default'>0500</chmod><chown dist='default'>www:www</chown>
   <abbreviation>script</abbreviation>
@@ -114,6 +122,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0400</chmod><chown dist='default'>www:www</chown>
   <abbreviation>graphicfile</abbreviation>
 </category>
+<category name="lexicon file" type="runtime">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>lexicon</abbreviation>
+</category>
+<category name="lexicon file" type="development">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>lexicon</abbreviation>
+</category>
 <category name="doc" type="runtime">
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>systemfile</abbreviation>
@@ -178,6 +194,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0700</chmod><chown dist='default'>www:www</chown>
   <abbreviation>directory</abbreviation>
 </category>
+<category name="pdf manual" type="runtime">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>manual</abbreviation>
+</category>
+<category name="pdf manual" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>manual</abbreviation>
+</category>
 </categories>
 <rpm>
   <rpmSummary>Basic files for running a LON-CAPA server.</rpmSummary>
@@ -234,10 +258,22 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf</targetdir>
+  <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2</targetdir>
   <categoryname>standard</categoryname>
   <description>web configuration files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>etc/httpd/conf/rewrites</targetdir>
+  <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd/rewrites</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2/rewrites</targetdir>
+  <categoryname>standard</categoryname>
+  <description>
+  default configuration files to enable/disable http:// -> https:// rewrites
+  </description>
+</directory>
+<directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/pam.d</targetdir>
   <categoryname>standard</categoryname>
@@ -247,56 +283,56 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian'>etc/init.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian'>etc/rc0.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian'>etc/rc1.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian'>etc/rc2.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian'>etc/rc3.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian'>etc/rc4.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian'>etc/rc5.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian'>etc/rc6.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
@@ -325,6 +361,12 @@ echo '**********************************
   <description>perl scripts for debugging the LON-CAPA system</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/perl/manage_dns</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>perl scripts for cluster table management on LON-CAPA DNS servers</description>
+</directory>
+<directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl/logs</targetdir>
   <categoryname>server standard</categoryname>
@@ -469,6 +511,30 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/images</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>images directory for learn-physics</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/images/login</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>directory for images for learn-physics log-in page</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/css</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>css directory for learn-physics</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/css/relate</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>css directory for learn-physics</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm</targetdir>
   <categoryname>server readonly</categoryname>
   <description>unauthenticated resources</description>
@@ -505,6 +571,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/geogebra</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>GeoGebra files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/jsMath</targetdir>
   <categoryname>server readonly</categoryname>
   <description>jsMath support files</description>
@@ -535,6 +607,42 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/ckeditor</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Rich Text Editor</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/js</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- js files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/images</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css images</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/dragmath/applet</targetdir>
   <categoryname>server readonly</categoryname>
   <description>Formula editor applet directory and popups</description>
@@ -777,6 +885,7 @@ are viewable over the world-wide web</de
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
   <targetdir dist='redhat8 redhat9'>usr/lib/perl5/site_perl/5.8.0</targetdir>
+  <targetdir dist='debian5'>usr/local/lib/perl/5.10.0</targetdir>
   <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
@@ -859,7 +968,7 @@ each list element consists of only two s
 <file>
 <source>loncom/loncapa.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa.conf</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/loncapa.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa.conf</target>
 <categoryname>conf</categoryname>
 <description>
 <p>
@@ -899,10 +1008,10 @@ MySQL database</td></tr>
 </table>
 </note>
 </file>
-<file>
+<file type="postaboutversion">
 <source>loncom/loncapa_apache.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_apache.conf</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/loncapa_apache.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_apache.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 The goal of this file is to implement all LON-CAPA specific
@@ -922,7 +1031,7 @@ the www@localhost MySQL password, and br
 <file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/startup.pl</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/startup.pl</target>
 <categoryname>static conf</categoryname>
 <description>
 This file provides initializations for perl handlers.  It adjusts what
@@ -931,6 +1040,49 @@ well as causing the Apache module to be
 <tt>startup.pl</tt> is invoked by <tt>loncapa_apache.conf</tt>.
 </description>
 </file>
+<link>
+<linkto>etc/apache2</linkto>
+<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>
+etc/apache2/conf
+</target>
+<categoryname>symbolic link</categoryname>
+<description>
+symbolic link to directory /etc/apache2 from /etc/apache2/conf
+</description>
+</link>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_off.conf</source>
+<target dist='default'>etc/httpd/conf/loncapa_rewrite.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_rewrite.conf</target>
+<categoryname>conf</categoryname>
+<description>
+Default rewrite file.
+Default is to disable rewriting of external requests for http:// to https://
+by setting: RewriteEngine off
+</description>
+</file>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_on.conf</source>
+<target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/rewrites/loncapa_rewrite_on.conf</target>
+<categoryname>static conf</categoryname>
+<description>
+File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to enable rewriting of
+external requests for http:// to https://
+</description>
+</file>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_off.conf</source>
+<target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/rewrites/loncapa_rewrite_off.conf</target>
+<categoryname>static conf</categoryname>
+<description>
+File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to disable rewriting of
+external requests for http:// to https://
+</description>
+</file>
 <file>
 <source>loncom/thesaurus/thesaurus.db</source>
 <target dist='default'>home/httpd/lonTabs/thesaurus.db</target>
@@ -1225,12 +1377,18 @@ home/httpd/html/res/adm/includes/templat
 Template files for generating new resources.
 </description>
 <filenames>
+answerdependent.problem;
+answerdependent.problem.meta;
 blank.library;
 blank.library.meta;
 blank.problem;
 blank.problem.meta;
 blank.task;
 blank.task.meta;
+dynamicgraph.problem;
+dynamicgraph.problem.meta;
+extreme.problem;
+extreme.problem.meta;
 simple.task;
 simple.task.meta;
 multiple_instance.task;
@@ -1243,8 +1401,14 @@ optional_criteria.task;
 optional_criteria.task.meta;
 ClickImageExample.problem;
 ClickImageExample.problem.meta;
+customhints.problem;
+customhints.problem.meta;
+custompartial.problem;
+custompartial.problem.meta;
 CustomResponse.problem;
 CustomResponse.problem.meta;
+customunit.problem;
+customunit.problem.meta;
 Essay.problem;
 Essay.problem.meta;
 examupload.problem;
@@ -1257,15 +1421,24 @@ man1.jpg;
 man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
+numPrePro.problem;
+numPrePro.problem.meta;
 Plot.problem.meta;
 Plot_curve.problem;
 Plot_curve.problem.meta;
 Plot_data.problem;
 Plot_data.problem.meta;
+Rnumerical.problem;
+Rnumerical.problem.meta;
 RadioResponse.problem;
 RadioResponse.problem.meta;
 RandomLabelExample.problem;
 RandomLabelExample.problem.meta;
+randomvalueradio.problem;
+randomvalueradio.problem.meta;
+sampleexternal.problem;
+sampleexternal.problem.meta;
+sampleexternal.pl;
 SelectFromOptions-4ConceptGoups.problem;
 SelectFromOptions-4ConceptGoups.problem.meta;
 SelectFromOptions-5ConceptGoups.problem;
@@ -1287,18 +1460,26 @@ SimpleFormulaCAS.problem;
 SimpleFormulaCAS.problem.meta;
 StringResponse.problem;
 StringResponse.problem.meta;
+stringPrePro.problem;
+stringPrePro.problem.meta;
 SimpleMatching.problem;
 SimpleMatching.problem.meta;
 SimpleMathResponse.problem;
 SimpleMathResponse.problem.meta;
+SimpleMathResponseR.problem;
+SimpleMathResponseR.problem.meta;
 SimpleRank.problem;
 SimpleRank.problem.meta;
 SimpleTrueFalse.problem;
 SimpleTrueFalse.problem.meta;
 organic.problem;
 organic.problem.meta;
+organic_hint.problem;
+organic_hint.problem.meta;
 reaction.problem;
-reaction.problem.meta
+reaction.problem.meta;
+reaction_hint.problem;
+reaction_hint.problem.meta
 </filenames>
 </fileglob>
 
@@ -1368,6 +1549,24 @@ Descriptive list of abbreviations used i
 and privileges available in the network with function
 </description>
 </file>
+<file>
+<source>loncom/managers.tab</source>
+<target dist='default'>home/httpd/lonTabs/managers.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+List of machines allowed to pass along updates to dns_hosts.tab and dns_domain.tab
+</description>
+</file>
+<file>
+<source>loncom/misc/releaseslist.xml</source>
+<target dist='default'>home/httpd/lonTabs/releaseslist.xml</target>
+<categoryname>static conf</categoryname>
+<description>
+XML specification of LON-CAPA version required for certain parameters,
+response types and course containers. Used to determine if a course
+needs a minimum LON-CAPA version to function correctly.
+</description>
+</file>
 
 <file type="private">
   <source>loncom/hosts.tab</source>
@@ -1405,6 +1604,25 @@ List of all domains in the LON-CAPA netw
 </file>
 
 <file>
+  <source>loncom/loncaparevs.tab</source>
+  <target dist='default'>home/httpd/lonTabs/loncaparevs.tab</target>
+  <categoryname>www conf</categoryname>
+  <description>
+File holds LON-CAPA version installed on all servers in the LON-CAPA network. Updated
+ by loncron. 
+  </description>
+</file>
+
+<file>
+  <source>loncom/serverhomeIDs.tab</source>
+  <target dist='default'>home/httpd/lonTabs/serverhomeIDs.tab</target>
+  <categoryname>www conf</categoryname>
+  <description>
+File holds paired data -- hostname:lonHostID for all servers in the LON-CAPA network (useful for determining which domain should control server settings for a multi-domain server). Updated by loncron.
+  </description>
+</file>
+
+<file>
 <source>loncom/spare.tab</source>
 <target dist='default'>home/httpd/lonTabs/spare.tab</target>
 <categoryname>conf</categoryname>
@@ -1501,6 +1719,15 @@ Batch script for removing files not acce
 </description>
 </file>
 <file>
+<source>loncom/misc/refresh_courseids_db.pl</source>
+<target dist='default'>home/httpd/perl/refresh_courseids_db.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for refreshing course information in aggregating GDBM
+file: nohist_courseids.db found in /home/httpd/lonUsers on library servers.
+</description>
+</file>
+<file>
 <source>loncom/debugging_tools/seed_accesscount.pl</source>
 <target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
 <categoryname>script</categoryname>
@@ -1543,6 +1770,14 @@ small script to handle the start up of t
   </description>
 </file>
 <file>
+  <source>loncom/lonr</source>
+  <target dist='default'>home/httpd/perl/lonr</target>
+  <categoryname>script</categoryname>
+  <description>
+    manages the existance and talking to the R processes
+  </description>
+</file>
+<file>
     <source>loncom/request_ssl_key.sh</source>
     <target dist='default'>home/httpd/lonCerts/request_ssl_key.sh</target>
     <categoryname>script</categoryname>
@@ -1618,6 +1853,21 @@ loncom/build/CHECKRPMS
 <description>CGI script that shows users currently on machine</description>
 </file>
 <file>
+<source>loncom/cgi/listdomconfig.pl</source>
+<target dist='default'>home/httpd/cgi-bin/listdomconfig.pl</target>
+<categoryname>script</categoryname>
+<description>CGI script to display domain configuration as plain text.
+For use on the primary library server for a domain. Access control uses
+routines in lonauthcgi.pm
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/sampleexternal.pl</source>
+<target dist='default'>home/httpd/cgi-bin/sampleexternal.pl</target>
+<categoryname>script</categoryname>
+<description>Sample External Response Script</description>
+</file>
+<file>
 <source>loncom/loncron</source>
 <target dist='default'>home/httpd/perl/loncron</target>
 <categoryname>script</categoryname>
@@ -1735,6 +1985,25 @@ set according to the user's authenticati
 <status>New file</status>
 </file>
 <file>
+<source>loncom/lciptables</source>
+<target dist='default'>home/httpd/perl/lciptables</target>
+<categoryname>setuid script</categoryname>
+<description>
+Calls iptables to update firewall settings for port used for internal
+LON-CAPA communication to receive traffic from other servers in cluster
+</description>
+<status>New file</status>
+</file>
+<file>
+<source>loncom/lchttpdlogs</source>
+<target dist='default'>home/httpd/perl/lchttpdlogs</target>
+<categoryname>setuid script</categoryname>
+<description>
+script called by loncron to tail latest web server access and error logs.
+</description>
+<status>works/verified</status>
+</file>
+<file>
 <source>loncom/lcuserdel</source>
 <target dist='default'>home/httpd/perl/lcuserdel</target>
 <categoryname>setuid script</categoryname>
@@ -1788,7 +2057,7 @@ HTTPi webserver license
 HTTPi webserver readme 
 </description>
 </file>
-<file>
+<file type="postaboutversion">
 <source>loncom/license/about.html</source>
 <target dist='default'>home/httpd/html/adm/about.html</target>
 <categoryname>interface file</categoryname>
@@ -2051,6 +2320,15 @@ Handler for a DC to pick an author from
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonpickuser.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickuser.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a user from a directory search
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonbulletin.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonbulletin.pm</target>
 <categoryname>handler</categoryname>
@@ -2225,7 +2503,7 @@ loncom/build/help_graphics_converter.pl
 <file>
 <source>doc/help/author.manual.pdf</source>
 <target dist='default'>home/httpd/html/adm/help/author.manual.pdf</target>
-<categoryname>handler</categoryname>
+<categoryname>pdf manual</categoryname>
 <description>
 The PDF Author's Manual
 </description>
@@ -2254,7 +2532,7 @@ loncom/build/help_graphics_converter.pl
 <file>
 <source>doc/help/course.manual.pdf</source>
 <target dist='default'>home/httpd/html/adm/help/course.manual.pdf</target>
-<categoryname>interface file</categoryname>
+<categoryname>pdf manual</categoryname>
 <description>
 The PDF Course Manual
 </description>
@@ -2283,7 +2561,7 @@ loncom/build/help_graphics_converter.pl
 <file>
 <source>doc/help/domain.manual.pdf</source>
 <target dist='default'>home/httpd/html/adm/help/domain.manual.pdf</target>
-<categoryname>interface file</categoryname>
+<categoryname>pdf manual</categoryname>
 <description>
 The PDF Domain Manual
 </description>
@@ -2373,19 +2651,51 @@ LONCAPA_Network_Diagram2.gif;
 LONCAPA_Network_Diagram.gif;
 Map_Example.gif;
 Resource_Assembly.gif;
+aboutme.gif;
+addClickerInfoFile.gif;
+anno.gif;
+anot.gif;
+anot2.gif;
 authorRemote.gif;
+bchat.gif;
+blog.gif;
+catalog.gif;
+ccat.gif;
+chat.gif;
+chrt.gif;
+com.gif;
 constructionSpace.gif;
 constructionSpaceForPublishing.gif;
+coprplot.gif;
+cprv.gif;
 creatingANewCourse.gif;
 creatingNewProblemResource.gif;
-cprv.gif;
+crsconf.gif;
+docs.gif;
+document-open.gif;
+document-properties.gif;
+dump.gif;
 dynamic_piecewise.gif;
 dynamic_piecewise2.gif;
 dynamic_plot.gif;
 dynamic_plot2.gif;
+edit-find-replace.gif;
+edit-redo.gif;
+edit-undo.gif;
+emblem-photos.gif;
+eval.gif;
+extres.gif;
+fdbk.gif;
+feedback.gif;
 formulaResponse.gif;
+fromfile.gif;
+grds.gif;
+grps.gif;
+list-add.gif;
 login.gif;
 lonhelpheader.gif;
+mail-message-new.gif;
+mail-reply-all.gif;
 mainCourseDocuments.gif;
 mapAdvancedEditorNew.gif;
 mapClickedStart.gif;
@@ -2401,20 +2711,56 @@ mapSecondWindowSecondResource.gif;
 mapSimpleEditor.gif;
 mapStraightened.gif;
 mapTwoResources.gif;
+messalog.gif;
+mngcu.gif;
+nav.gif;
+navigation.gif;
+network-workgroup.gif;
+new.gif;
 numericalResponse1.gif;
 numericalResponseEditor.gif;
 numericalResponseSlopeProblem.gif;
 numericalResponseVarInText.gif;
 optionResponseEditing.gif;
 optionResponseProblem.gif;
+page.gif;
+parm.gif;
+pgrd.gif;
+port.gif;
 pref.gif;
+preferences-desktop-font.gif;
+preferences-desktop-locale.gif;
+preferences-desktop-theme.gif;
+prt.gif;
 publishMetadata.gif;
 radioResponse2.gif;
 radioResponseHint.gif;
+rcrs.gif;
+res.gif;
+resversion.gif;
+roles.gif;
+rsrv.gif;
+scoreupfrm.gif;
+sctr.gif;
+self_enroll.gif;
+simple.gif;
+simpprob.gif;
 smallHelp.gif;
 spreadsheet_hierarchy.gif;
+sprs.gif;
+src.gif;
+stat.gif;
 stringResponseEditor.gif;
 studentInterface.gif;
+subdocs.gif;
+subtimpl.gif;
+survey_rep.gif;
+syllabus.gif;
+system-users.gif;
+uploadscores.gif;
+uplusr.gif;
+vbkm.gif;
+verify.gif;
 iclicker.gif;
 interwrite1.gif;
 interwrite2.gif;
@@ -2450,18 +2796,51 @@ LONCAPA_Network_Diagram2.eps;
 LONCAPA_Network_Diagram.eps;
 Map_Example.eps;
 Resource_Assembly.eps;
+aboutme.eps;
+addClickerInfoFile.eps;
+anno.eps;
+anot.eps;
+anot2.eps;
 authorRemote.eps;
+bchat.eps;
+blog.eps;
+catalog.eps;
+ccat.eps;
+chat.eps;
+chrt.eps;
+com.eps;
 constructionSpace.eps;
 constructionSpaceForPublishing.eps;
+coprplot.eps;
+cprv.eps;
 creatingANewCourse.eps;
 creatingNewProblemResource.eps;
+crsconf.eps;
+docs.eps;
+document-open.eps;
+document-properties.eps;
+dump.eps;
 dynamic_piecewise.eps;
 dynamic_piecewise2.eps;
 dynamic_plot.eps;
 dynamic_plot2.eps;
+edit-find-replace.eps;
+edit-redo.eps;
+edit-undo.eps;
+emblem-photos.eps;
+eval.eps;
+extres.eps;
+fdbk.eps;
+feedback.eps;
 formulaResponse.eps;
+fromfile.eps;
+grds.eps;
+grps.eps;
+list-add.eps;
 lonhelpheader.eps;
 login.eps;
+mail-message-new.eps;
+mail-reply-all.eps;
 mainCourseDocuments.eps;
 mapAdvancedEditorNew.eps;
 mapClickedStart.eps;
@@ -2477,19 +2856,55 @@ mapSecondWindowSecondResource.eps;
 mapSimpleEditor.eps;
 mapStraightened.eps;
 mapTwoResources.eps;
+messalog.eps;
+mngcu.eps;
+nav.eps;
+navigation.eps;
+network-workgroup.eps;
+new.eps;
 numericalResponse1.eps;
 numericalResponseEditor.eps;
 numericalResponseSlopeProblem.eps;
 numericalResponseVarInText.eps;
 optionResponseEditing.eps;
 optionResponseProblem.eps;
+page.eps;
+parm.eps;
+pgrd.eps;
+port.eps;
+preferences-desktop-font.eps;
+preferences-desktop-locale.eps;
+preferences-desktop-theme.eps;
+prt.eps;
 publishMetadata.eps;
 radioResponse2.eps;
 radioResponseHint.eps;
+rcrs.eps;
+res.eps;
+resversion.eps;
+roles.eps;
+rsrv.eps;
+scoreupfrm.eps;
+sctr.eps;
+self_enroll.eps;
+simple.eps;
+simpprob.eps;
 smallHelp.eps;
 spreadsheet_hierarchy.eps;
+sprs.eps;
+src.eps;
+stat.eps;
 stringResponseEditor.eps;
 studentInterface.eps;
+subdocs.eps;
+subtimpl.eps;
+survey_rep.eps;
+syllabus.eps;
+system-users.eps;
+uploadscores.eps;
+uplusr.eps;
+vbkm.eps;
+verify.eps;
 iclicker.eps;
 interwrite1.eps;
 interwrite2.eps;
@@ -2638,7 +3053,36 @@ Course_Message_Access.tex;
 Course_Modify_Student_Data.tex;
 Course_Parameter_Levels.tex;
 Course_Parameter_Table_Mode.tex;
+Course_Prefs_Bridgetasks.tex;
+Course_Prefs_Display.tex;
+Course_Prefs_Grading.tex;
+Course_Prefs_Printouts.tex;
+Course_Prefs_Classlists.tex;
+Course_Prefs_Feedback.tex;
+Course_Prefs_Language.tex;
+Course_Prefs_Spreadsheet.tex;
+Course_Prefs_Discussions.tex;
+Course_Prefs_General.tex;
+Course_Prefs_Other.tex;
 Course_Problem_Weight.tex;
+Course_Requests.tex;
+Course_Request_Access_End.tex;
+Course_Request_Access_Start.tex;
+Course_Request_Autoadd.tex;
+Course_Request_Autodrop.tex;
+Course_Request_Category.tex;
+Course_Request_Clone.tex;
+Course_Request_Crosslist.tex;
+Course_Request_Description.tex;
+Course_Request_Enroll_End.tex;
+Course_Request_Enroll_Start.tex;
+Course_Request_LCSection.tex;
+Course_Request_Personnel.tex;
+Course_Request_RegAccess_End.tex;
+Course_Request_RegAccess_Start.tex;
+Course_Request_Rolesection.tex;
+Course_Request_Sections.tex;
+Course_Roles.tex;
 Course_Self_Enrollment.tex;
 Course_Set_Start_End_Date.tex;
 Course_Setting_Parameters.tex;
@@ -2656,6 +3100,7 @@ Creating_New_Content_Pages.tex;
 Creating_Online_Problems.tex;
 Creating_Radio_Response_Problems.tex;
 Custom_Response_Problems.tex;
+Deleting_Domain_Coordinators.tex;
 Developer_Manual_Title_Page.tex;
 Developer_Tutorial.tex;
 Distribute_Messages.tex;
@@ -2690,18 +3135,24 @@ Docs_String_Response.tex;
 Docs_Supplemental.tex;
 Docs_Uploading_From_Harddrive.tex;
 Docs_Verify_Content.tex;
+Domain_Configuration_Auto_Creation.tex;
 Domain_Configuration_Auto_Enrollment.tex;
 Domain_Configuration_Auto_Updates.tex;
 Domain_Configuration_Cataloging_Courses.tex;
 Domain_Configuration_Color_Schemes.tex;
 Domain_Configuration_Contact_Info.tex;
+Domain_Configuration_Course_Defaults.tex;
 Domain_Configuration_InstDirectory_Search.tex;
 Domain_Configuration_LangTZAuth.tex;
 Domain_Configuration_Login_Page.tex;
 Domain_Configuration_Quotas.tex;
+Domain_Configuration_Request_Courses.tex;
 Domain_Configuration_Scantron_Format.tex;
+Domain_Configuration_Server_Status.tex;
+Domain_Configuration_SSL.tex;
 Domain_Configuration_User_Creation.tex;
 Domain_Configuration_User_Modification.tex;
+Domain_Configuration_User_Sessions.tex;
 Domain_Coordination_Intro.tex;
 Domain_Coordination_Overview.tex;
 Domain_Crontab_Entries.tex;
@@ -2734,6 +3185,12 @@ Formula_Response_Limitations.tex;
 Formula_Response_Problems.tex;
 Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
+Function_Plot_Response_Background_Plot.tex;
+Function_Plot_Response_Evaluation_Rule.tex;
+Function_Plot_Response_Rule_Set.tex;
+Function_Plot_Response_Elements.tex;
+Function_Plot_Response_Question.tex;
+Function_Plot_Response_Spline.tex;
 General_Intro.tex;
 Generation.tex;
 Grade_All.tex;
@@ -2758,6 +3215,7 @@ Helper_Course_Initialization.tex;
 How_To_Edit_Existing_Content_Pages.tex;
 Institutional_Integration_Authentication.tex;
 Institutional_Integration_Course_Codes.tex;
+Institutional_Integration_Course_Requests.tex;
 Institutional_Integration_Format_Checks.tex;
 Institutional_Integration_Identity_Management.tex;
 Institutional_Integration_User_Categories.tex;
@@ -2769,6 +3227,11 @@ Math_Response_Problems.tex;
 Maxima_Argument_Array.tex;
 Maxima_Libraries.tex;
 Metadata_Description.tex;
+Modify_Community_Owner.tex;
+Modify_Course_Defaultauth.tex;
+Modify_Course_Instcode.tex;
+Modify_Course_Owner.tex;
+Modify_Course_Quota.tex;
 Navigation_Screen.tex;
 Navmap_Host_Down.tex;
 NavMaps_MarkPosts_Read.tex;
@@ -2797,6 +3260,7 @@ Parameter_encrypturl.tex;
 Parameter_Helper.tex;
 Parameter_Manager.tex;
 Parameter_Overview.tex;
+Parameter_Set_Folder.tex;
 Part_Tag_Edit_Help.tex;
 Personal_Info_Page.tex;
 Physical_Units.tex;
@@ -2921,6 +3385,7 @@ Tolerance.tex;
 Uploaded_Templates_PublicView.tex;
 Uploaded_Templates_TextBoxes.tex;
 Uploading_File_Options.tex;
+Using_Clickers.tex;
 Variable_Naming_Conventions.tex;
 Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
@@ -2945,9 +3410,12 @@ German Tex files for the help system
 <filenames>
 About_Bombs.tex;
 About_Communication.tex;
+Auth_Options.tex;
 Authoring_Math_Editor.tex;
 Contextual_Help.tex;
 Cascading_Parameters.tex;
+Course_Convert_To_CSV.tex;
+Course_Create_Class_List.tex;
 Course_Self_Enrollment.tex;
 Docs_About_Bulletin_Board.tex;
 Docs_About_Group_Files.tex;
@@ -3022,7 +3490,7 @@ rebuild_label_hash.sh
 </dependencies>
 </file>
 <fileglob>
-  <glob>*</glob>
+  <glob>*.*</glob>
   <sourcedir>loncom/html/adm/fonts/</sourcedir>
   <targetdir dist='default'>home/httpd/html/adm/fonts/</targetdir>
   <categoryname>interface file</categoryname>
@@ -3030,22 +3498,58 @@ rebuild_label_hash.sh
     Fonts for convertjme.pl
   </description>
   <filenames>
-AUTHORS;
-BUGS;
 DejaVuSerif-Roman.ttf;
 DejaVuSansMono-Bold.ttf;
 DejaVuSans.pfb;
 DejaVuSans.ttf;
 DejaVuSerif.pfb;
 DejaVuSerif.ttf;
-LICENSE;
-NEWS;
-README;
 status.txt;
 unicover.txt;
   </filenames>
 </fileglob>
 <file>
+<source>loncom/html/adm/fonts/AUTHORS</source>
+<target dist='default'>home/httpd/html/adm/fonts/AUTHORS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/fonts/BUGS</source>
+<target dist='default'>home/httpd/html/adm/fonts/BUGS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/LICENSE</source>
+<target dist='default'>home/httpd/html/adm/fonts/LICENSE</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/NEWS</source>
+<target dist='default'>home/httpd/html/adm/fonts/NEWS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/README</source>
+<target dist='default'>home/httpd/html/adm/fonts/README</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
 <source>loncom/interface/lonstatistics.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonstatistics.pm</target>
 <categoryname>handler</categoryname>
@@ -3449,6 +3953,24 @@ Internal routines for creating a clone o
   <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonrequestcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrequestcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows submission of course requests by users with the right to request them 
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/loncoursequeueadmin.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursequeueadmin.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Common routines for administration of queues containing user-submitted requests - either for self-enrollment in an existing course, or for creation of a new course.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/loncreateuser.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncreateuser.pm</target>
 <categoryname>handler</categoryname>
@@ -3521,7 +4043,7 @@ Localization class for Locale::Maketext
 <sourcedir>loncom/localize/localize/</sourcedir>
 <targetdir dist='default'>
 home/httpd/lib/perl/Apache/localize/</targetdir>
-<categoryname>static conf</categoryname>
+<categoryname>lexicon file</categoryname>
 <description>
 Translation files.
 </description>
@@ -3610,6 +4132,13 @@ Coordinates the response to clicking an
 Handles tags associated with showing a list of options.</description>
 </file>
 <file>
+<source>loncom/homework/functionplotresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/functionplotresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handles tags associated with function plots using GeoGebra.</description>
+</file>
+<file>
 <source>loncom/homework/outputtags.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/outputtags.pm</target>
 <categoryname>handler</categoryname>
@@ -3649,6 +4178,42 @@ smiles.gif
 
 <fileglob>
   <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/geogebra/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/geogebra/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    Geogebra, for functionplotresponse
+  </description>
+  <filenames>
+geogebra_algos.jar;
+geogebra_algos.jar.pack.gz;
+geogebra_javascript.jar;
+geogebra_javascript.jar.pack.gz;
+geogebra_cas.jar;
+geogebra_export.jar.pack.gz;
+geogebra.jar;
+geogebra_main.jar.pack.gz;
+geogebra_cas.jar.pack.gz;
+geogebra_gui.jar;
+geogebra.jar.pack.gz;
+geogebra_properties.jar;
+geogebra_export.jar;
+geogebra_gui.jar.pack.gz;
+geogebra_main.jar;
+geogebra_properties.jar.pack.gz;
+geogebra_usb.jar;
+geogebra_usb.jar.pack.gz;
+jlatexmath.jar;
+jlatexmath.jar.pack.gz;
+jlm_cyrillic.jar;
+jlm_cyrillic.jar.pack.gz;
+jlm_greek.jar;
+jlm_greek.jar.pack.gz;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
   <sourcedir>loncom/html/adm/jmol/</sourcedir>
   <targetdir dist='default'>home/httpd/html/adm/jmol/</targetdir>
   <categoryname>interface file</categoryname>
@@ -3836,8 +4401,8 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 </file>
 
 <file>
-  <source>loncom/html/adm/fckeditor/FCKeditor_2.6.3.tar.gz</source>
-  <target dist='default'>home/httpd/html/adm/fckeditor</target>
+  <source>loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz</source>
+  <target dist='default'>home/httpd/html/adm/ckeditor</target>
   <categoryname>script</categoryname>
   <description>
    GUI HTML Editor, scripted installation decompress the tarball and
@@ -3847,9 +4412,9 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 commands /home/httpd/html/
   </installscript>
   <dependencies>
-loncom/html/adm/fckeditor/commands;
-loncom/html/adm/fckeditor/FCKeditor_2.6.3.tar.gz;
-loncom/html/adm/fckeditor/loncapaconfig.js;
+loncom/html/adm/ckeditor/commands;
+loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz;
+loncom/html/adm/ckeditor/loncapaconfig.js;
   </dependencies>
 </file>
 
@@ -3920,6 +4485,58 @@ jsMath.js;
   </filenames>
 </fileglob>
 
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/js/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/js/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.6.2, UI version 1.8.16
+  </description>
+  <filenames>
+	jquery-1.6.2.min.js;
+	jquery-ui-1.8.16.custom.min.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/css/smoothness/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.6.2, UI version 1.8.16 -- stylesheets
+  </description>
+  <filenames>
+	jquery-ui-1.8.16.custom.css;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/css/smoothness/images/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/images/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.6.2, UI version 1.8.16 -- images for css.
+  </description>
+  <filenames>
+  	ui-bg_flat_0_aaaaaa_40x100.png;
+	ui-bg_flat_75_ffffff_40x100.png;
+	ui-bg_glass_55_fbf9ee_1x400.png;
+	ui-bg_glass_65_ffffff_1x400.png;
+	ui-bg_glass_75_dadada_1x400.png;
+	ui-bg_glass_75_e6e6e6_1x400.png;
+	ui-bg_glass_95_fef1ec_1x400.png;
+	ui-bg_highlight-soft_75_cccccc_1x100.png;
+	ui-icons_2e83ff_256x240.png;
+	ui-icons_222222_256x240.png;
+	ui-icons_454545_256x240.png;
+	ui-icons_888888_256x240.png;
+	ui-icons_cd0a0a_256x240.png;
+  </filenames>
+</fileglob>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -4254,6 +4871,14 @@ The handler displays messages, has routi
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/courseprefs.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/courseprefs.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for displaying/modifying course configuration
+  </description>
+</file>
+<file>
 <source>loncom/homework/hint.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/hint.pm</target>
 <categoryname>handler</categoryname>
@@ -4668,6 +5293,15 @@ Table object
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/lonlatextable.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonlatextable.pm</target>
+<categoryname>server standard</categoryname>
+<description>
+Simple subset replacement for LaTeX::Table
+</description>
+<status>works</status>
+</file>
+<file>
 <source>loncom/xml/run.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/run.pm</target>
 <categoryname>handler</categoryname>
@@ -4810,6 +5444,15 @@ handles request to the CAPA homework pro
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/lonr.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonr.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    routines to simplify talking to the R client
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/Safe.pm</source>
 <target dist='default'>home/httpd/lib/perl/Safe.pm</target>
 <categoryname>handler</categoryname>
@@ -5032,7 +5675,7 @@ by the URL-related pattern syntax:
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/auth/lonlogin.pm</source>
+<source>modules/relate/lonlogin.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonlogin.pm</target>
 <categoryname>handler</categoryname>
 <description>login screen</description>
@@ -5084,7 +5727,7 @@ by the URL-related pattern syntax:
   <source>loncom/auth/migrateuser.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/migrateuser.pm</target>
   <categoryname>handler</categoryname>
-  <description>auto logsin a remote user</description>
+  <description>auto logs in a remote user</description>
   <status>works/unverified</status>
 </file>
 <file>
@@ -5298,7 +5941,7 @@ Domain information serving.
 <file>
 <source>loncom/mime.types</source>
 <target dist='default'>etc/httpd/conf/mime.types</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/mime.types</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/mime.types</target>
 <categoryname>www static conf</categoryname>
 <description>Expanded mime.types</description>
 </file>
@@ -5565,7 +6208,6 @@ arrow.closed.gif;
 arrow.open.gif;
 arrow.up.gif;
 arrow_up.gif;
-arrow_white.png;
 avi.gif;
 baeh.gif;
 bigsmile.gif;
@@ -5589,6 +6231,23 @@ eps.gif;
 eps_big.gif;
 exam.gif;
 exam_big.gif;
+face-angel.png;
+face-angry.png;
+face-cool.png;
+face-crying.png;
+face-embarrassed.png;
+face-glasses.png;
+face-kiss.png;
+face-plain.png;
+face-quiet.png;
+face-raspberry.png;
+face-sad.png;
+face-sick.png;
+face-smile.png;
+face-smile-big.png;
+face-surprise.png;
+face-uncertain.png;
+face-wink.png;
 fillbottom.gif;
 fillleft.gif;
 fillright.gif;
@@ -5597,6 +6256,10 @@ folder_closed.gif;
 folder_opened.gif;
 folder_pointer_closed.gif;
 folder_pointer_opened.gif;
+food-cake.png;
+face-ninja.png;
+face-pirate.png;
+food-pizza.png;
 form.gif;
 form_big.gif;
 frowny.gif;
@@ -5604,6 +6267,7 @@ gif.gif;
 gif_big.gif;
 header.gif;
 header.png;
+heart.png;
 helpdesk.gif;
 helpgateway.gif;
 hrrm.gif;
@@ -5659,6 +6323,9 @@ navmap.folder.closed.gif;
 navmap.folder.open.nomanip.gif;
 navmap.folder.closed.nomanip.gif;
 neutral.gif;
+open.gif;
+opinion-agree.png;
+opinion-disagree.png;
 page.gif;
 page_big.gif;
 pdf.gif;
@@ -5672,6 +6339,7 @@ problem_big.gif;
 ps.gif;
 ps_big.gif;
 rolleyes.gif;
+rose.png;
 qt.gif;
 qti.gif;
 qtm.gif;
@@ -5694,12 +6362,15 @@ srvnull.gif;
 stift.gif;
 survey.gif;
 survey_big.gif;
+tabbgleft.gif;
+tabbgright.gif;
 task.gif;
 task_big.gif;
 tex.gif;
 tex_big.gif;
 tth.gif;
 text.gif;
+transparent1x1.gif;
 txt.gif;
 txt_big.gif;
 unknown.gif;
@@ -5708,9 +6379,6 @@ upperleft.gif;
 upperright.gif;
 user.gif;
 user_big.gif;
-userauthentication.gif;
-userauthentication_pt.gif;
-userauthentication_de.gif;
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
@@ -5763,6 +6431,39 @@ subm_button.gif;
 subm_button.png;
 </filenames>
 </fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>modules/relate/images/login/</sourcedir>
+<targetdir dist='default'>home/httpd/html/images/login/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>
+Images for custom log-in page for learn-physics
+</description>
+<filenames>
+LCrelateheader_sm.png;
+bl_11_993333_ffffff.gif;
+bl_11_ffffff_e2e2e2.gif;
+br_11_993333_ffffff.gif;
+br_11_ffffff_e2e2e2.gif;
+tlc_11_993333_ffffff.gif;
+tlc_11_ffffff_e2e2e2.gif;
+tr_11_993333_ffffff.gif;
+tr_11_ffffff_e2e2e2.gif;
+sponsors.png
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>modules/relate/css/relate/</sourcedir>
+<targetdir dist='default'>home/httpd/html/css/relate/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+CSS for learn-physics (relate domain)
+</description>
+<filenames>
+login.css;
+</filenames>
+</fileglob>
 <file>
 <source>loncom/xml/algebra/AlgParser.pm</source>
 <target dist='default'>home/httpd/lib/perl/AlgParser.pm</target>
@@ -5883,6 +6584,16 @@ entries.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/configuration/Firewall.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Firewall.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Provides methods to open and close firewall ports used for  
+for socket-based communication between LON-CAPA servers
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/ConfigFileEdit.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
 <categoryname>system file</categoryname>
@@ -5912,8 +6623,14 @@ modules/TexConvert/tthperl/commands
 commands;
 compiles/tth.so.i386;
 compiles/tth.so.x86_64;
-compiles/tth.so.i386.fedora9;
-compiles/tth.so.x86_64.fedora9;
+compiles/tth.so.i386.perl.5.10;
+compiles/tth.so.x86_64.perl.5.10;
+compiles/tth.so.i386.perl.5.12;
+compiles/tth.so.x86_64.perl.5.12;
+compiles/tth.so.i386.perl.5.14;
+compiles/tth.so.x86_64.perl.5.14;
+compiles/tth.so.i386.debian5;
+compiles/tth.so.x86_64.debian5
 </dependencies>
 </file>
 <file>
@@ -6386,15 +7103,6 @@ back.gif;
 bchat.gif;
 bkm.gif;
 blog.gif;
-bl_step1.gif;
-bl_step2.gif;
-bl_step3.gif;
-bl_step4.gif;
-bl_step5.gif;
-bl_step6.gif;
-bl_step7.gif;
-bl_step8.gif;
-bl_step9.gif;
 brws.gif;
 catalog.gif;
 ccat.gif;
@@ -6408,6 +7116,7 @@ com.gif;
 conf.gif;
 courses.gif;
 cprv.gif;
+crsconf.gif;
 cstr.gif;
 del.gif;
 dempty.gif;
@@ -6442,6 +7151,7 @@ next.gif;
 nothumb.gif;
 open-all-folders.gif;
 open-first-problem.gif;
+pdfupload.gif;
 parm.gif;
 pcstr.gif;
 pgrd.gif;
@@ -6487,6 +7197,7 @@ ccrs.png;
 clst.png;
 conf.png;
 courses.png;
+crsconf.png;
 docs.png;
 eval.png;
 grds.png;
@@ -6533,6 +7244,17 @@ res.png;
 rtrv.png;
 sctr.png;
 stat.png;
+pdfupload.png;
+course_ini.png;
+dismath.png;
+feedback.png;
+mngcu.png;
+prob_ana.png;
+role_hotlist.png;
+self_enroll.png;
+survey_rep.png;
+subdocs.png;
+uplusr.png;
 </filenames>
 </fileglob>
 <fileglob>
@@ -6542,43 +7264,83 @@ stat.png;
 <categoryname>graphic file</categoryname>
 <description>graphical icons used in submenus</description>
 <filenames>
+aboutme.png;
 addClickerInfoFile.png;
+anonsurveythreshold.png;
+ccatconf.png;
+chat.png;
 comblock.png;
 contact-new.png;
 coprplot.png;
+crsnew.png;
 dialog-information.png;
 document-open.png;
 document-properties.png;
+dropbox.png;
+dump.png;
 edit-copy.png;
-edit-find.png;
 edit-find-replace.png;
+edit-find.png;
 edit-redo.png;
 edit-select-all.png;
 edit-undo.png;
 emblem-photos.png;
 emblem-readonly.png;
 emblem-system.png;
+extres.png;
 folder-new.png;
 format-justify-fill.png;
 fromfile.png;
+groupportfolio.png;
+groupportfolioquota.png;
+grp_add.png;
+grp_settings.png;
+grp_tools.png;
+ims.png;
+imsexport.png;
 list-add.png;
+log.png;
 mail-message-new.png;
 mail-reply-all.png;
 mail-reply-sender.png;
 messalog.png;
-network-wireless.png;
+myaboutme.png;
+navigation.png;
 network-workgroup.png;
-uploadscores.png;
+page.png;
 preferences-desktop-font.png;
 preferences-desktop-locale.png;
 preferences-desktop-remote-desktop.png;
 preferences-desktop-theme.png;
 preferences-desktop-wallpaper.png;
 preferences-system-windows.png;
+recover.png;
+remotecontrol.png;
+resversion.png;
+scoreupfrm.png;
+selfenrl-queue.png;
+sequence.png;
+simple.png;
+simpprob.png;
 start-here.png;
 subtimpl.png;
+syllabus.png;
+symbs.png;
 system-lock-screen.png;
 system-users.png;
+uplcrs.png;
+uploadscores.png;
+verify.png;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>modules/relate/images/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Custom images for learn-physics</description>
+<filenames>
+refresh.gif;
 </filenames>
 </fileglob>
 <file>
@@ -6863,6 +7625,14 @@ preserve_local_loncapa_cron
   </dependencies>
 </file>
 <file>
+<source>loncom/cron/loncapa</source>
+<target dist='default'>home/httpd/lib/perl/loncapa_cron-std</target>
+<categoryname>handler</categoryname>
+<description>
+  Back-up of standard loncapa cron file (the actual file in use: /etc/cron.d/loncapa may contain local modifications).
+</description>
+</file>
+<file>
 <source>loncom/ntp/step-tickers</source>
 <target dist='default'>usr/local/loncapa/doc/conf_examples/ntp_step-tickers
 </target>
@@ -6895,7 +7665,7 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
-<target dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3'>etc/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
@@ -6903,7 +7673,7 @@ Controls the launching/halting of lonc,
 </file>
 <link>
 <linkto dist='default'>etc/rc.d/init.d/loncontrol</linkto>
-<linkto dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3'>etc/init.d/loncontrol</linkto>
+<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</linkto>
 <target dist='default'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
@@ -6913,20 +7683,37 @@ etc/rc.d/rc4.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
-<target dist='suse10.2 suse10.3'></target>
+<target='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>
+etc/rc.d/rc0.d/K05loncontrol;
+etc/rc.d/rc1.d/K05loncontrol;
+etc/rc.d/rc2.d/K05loncontrol;
+etc/rc.d/rc3.d/S95loncontrol;
+etc/rc.d/rc5.d/S95loncontrol;
+etc/rc.d/rc6.d/K05loncontrol
+</target>
+<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>
+etc/rc0.d/K05loncontrol;
+etc/rc1.d/K05loncontrol;
+etc/rc2.d/S95loncontrol;
+etc/rc3.d/S95loncontrol;
+etc/rc4.d/S95loncontrol;
+etc/rc5.d/S95loncontrol;
+etc/rc6.d/K05loncontrol
+</target>
 <categoryname>symbolic link</categoryname>
 <description>
-symbolic links to /etc/rc.d/init.d/loncontrol for run-levels</description>
+symbolic links to /etc/rc.d/init.d/loncontrol (redhat/fedora) or /etc/init.d/loncontrol (suse/debian) for run-levels
+</description>
 </link>
 
-<file dist="suse10.2 suse10.3">
+<file dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
   <source>loncom/init.d/loncontrol</source>
   <target>etc/rc.d/</target>
   <description>
     setup loncontrol to run at boot
   </description>
-  <installscript dist="suse10.2 suse10.3">
--c 'chkconfig --del loncontrol;chkconfig loncontrol 345;chkconfig --list loncontrol'
+  <installscript dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
+-c 'chkconfig --del loncontrol;chkconfig loncontrol 35;chkconfig --list loncontrol'
   </installscript>
   <dependencies>
 loncom/init.d/loncontrol
@@ -7060,7 +7847,23 @@ of users, and (b) to display e-mail of t
     Handler for generation of a menu of links to server status utilities
   </description>
 </file>
-
+<file>
+  <source>loncom/interface/lonconfigsettings.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonconfigsettings.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Common routines for generating menus to set default configuration settings -  
+   for a domain or for a course.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpdfupload.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpdfupload.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Interface to upload a PDF form containing responses to problems entered offline using a PDF reader for storage as submissions.
+  </description>
+</file>
 <file>
   <source>loncom/interface/lonpopulate.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonpopulate.pm</target>
@@ -7134,6 +7937,14 @@ of users, and (b) to display e-mail of t
   </description>
 </file>
 <file>
+  <source>loncom/interface/lonblockingstatus.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonblockingstatus.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Used for displaying the communication blocking status.
+  </description>
+</file>
+<file>
   <source>loncom/automation/Autocreate.pl</source>Autocreate.pl
   <target dist='default'>home/httpd/perl/Autocreate.pl</target>
   <categoryname>script</categoryname>
@@ -7162,12 +7973,13 @@ modify_config_files.pl;
 parse_scantron.pl;
 seed_accesscount.pl;
 stress.pl;
+testkerberos.pl;
 unescape.pl;
 user_login_count.pl;
 </filenames>
 </fileglob>
 <fileglob>
-    <glob>*</glob>
+    <glob>*.*</glob>
     <sourcedir>loncom/debugging_tools/compiled/</sourcedir>
     <targetdir dist='default'>home/httpd/perl/debug/</targetdir>
     <categoryname>script</categoryname>
@@ -7175,13 +7987,34 @@ user_login_count.pl;
       Binary tools for LON-CAPA
     </description>
 <filenames>
-create_db_dynamic;
-create_db_dynamic_64;
 create_db_dynamic_64_so.3;
-dump_db_static_32;
 </filenames>
 </fileglob>
 <file>
+<source>loncom/debugging_tools/compiled/create_db_dynamic</source>
+<target dist='default'>home/httpd/perl/debug/create_db_dynamic</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/compiled/create_db_dynamic_64</source>
+<target dist='default'>home/httpd/perl/debug/create_db_dynamic_64</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/compiled/dump_db_static_32</source>
+<target dist='default'>home/httpd/perl/debug/dump_db_static_32</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
 <source>loncom/build/distprobe</source>
 <target dist='default'>home/httpd/perl/distprobe</target>
 <categoryname>script</categoryname>
@@ -7191,5 +8024,15 @@ for probing operating system flavor and
 <note>
 </note>
 </file>
+<file>
+<source>loncom/clusteradmin</source>
+<target dist='default'>home/httpd/perl/manage_dns/clusteradmin</target>
+<categoryname>root script</categoryname>
+<description>
+Script to update cluster tables: dns_hosts.tab and dns_domain.tab
+on a LON-CAPA DNS server.
+</description>
+<status>works/unverified</status>
+</file>
 </files>
 </lpml>