--- doc/loncapafiles/loncapafiles.lpml	2013/05/11 16:58:13	1.797.2.35
+++ doc/loncapafiles/loncapafiles.lpml	2012/08/17 22:51:33	1.808
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.797.2.35 2013/05/11 16:58:13 raeburn Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.808 2012/08/17 22:51:33 www Exp $ -->
 
 <!--
 
@@ -259,7 +259,7 @@ echo '**********************************
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf</targetdir>
   <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/apache2</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2</targetdir>
   <categoryname>standard</categoryname>
   <description>web configuration files</description>
 </directory>
@@ -267,7 +267,7 @@ echo '**********************************
   <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf/rewrites</targetdir>
   <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd/rewrites</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/apache2/rewrites</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2/rewrites</targetdir>
   <categoryname>standard</categoryname>
   <description>
   default configuration files to enable/disable http:// -> https:// rewrites
@@ -283,56 +283,56 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/init.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc0.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc1.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc2.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc3.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc4.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc5.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc6.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
@@ -685,33 +685,7 @@ extensions</description>
   <categoryname>server readonly</categoryname>
   <description>JQuery countdown timer</description>
 </directory>
- 
-<!-- JQuery spellchecker plugin -->
-
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>/home/httpd/html/adm/spellchecker</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>JQuery spellchecker plugin</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>/home/httpd/html/adm/spellchecker/js</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>JQuery spellchecker plugin</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>/home/httpd/html/adm/spellchecker/css</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>JQuery spellchecker plugin</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>/home/httpd/html/adm/spellchecker/img</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>JQuery spellchecker plugin</description>
-</directory>
+  
 
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
@@ -909,12 +883,6 @@ are viewable over the world-wide web</de
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/lonLCDfont</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>LCD font for remote control</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonDomLogos</targetdir>
   <categoryname>server readonly</categoryname>
   <description>Logos for LON-CAPA domains</description>
@@ -1033,7 +1001,7 @@ each list element consists of only two s
 <file>
 <source>loncom/loncapa.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa.conf</target>
 <categoryname>conf</categoryname>
 <description>
 <p>
@@ -1076,7 +1044,7 @@ MySQL database</td></tr>
 <file type="postaboutversion">
 <source>loncom/loncapa_apache.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_apache.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa_apache.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa_apache.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 The goal of this file is to implement all LON-CAPA specific
@@ -1094,22 +1062,9 @@ the www@localhost MySQL password, and br
 </description>
 </file>
 <file>
-<source>loncom/loncapa_apache_local.conf</source>
-<target dist='default'>etc/httpd/conf/loncapa_apache_local.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/startup.pl</target>
-<categoryname>static conf</categoryname>
-<description>
-Documentation file describing how to add domain-specific Apache configuration
-files, e.g., (loncapa_apache_localmsu.conf).
-loncapa_apache_local.conf needs to exist if no domain-specific file has so far
-been created so that Apache 2.4 will start, given that loncapa_apache.conf has:
-Include conf/loncapa_apache_local*.conf
-</description>
-</file>
-<file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/startup.pl</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/startup.pl</target>
 <categoryname>static conf</categoryname>
 <description>
 This file provides initializations for perl handlers.  It adjusts what
@@ -1131,7 +1086,7 @@ symbolic link to directory /etc/apache2
 <file>
 <source>loncom/rewrites/loncapa_rewrite_off.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_rewrite.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa_rewrite.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa_rewrite.conf</target>
 <categoryname>conf</categoryname>
 <description>
 Default rewrite file. 
@@ -1143,7 +1098,7 @@ by setting: RewriteEngine off
 <source>loncom/rewrites/loncapa_rewrite_on.conf</source>
 <target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_on.conf</target>
 <target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_on.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/rewrites/loncapa_rewrite_on.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to enable rewriting of
@@ -1154,7 +1109,7 @@ external requests for http:// to https:/
 <source>loncom/rewrites/loncapa_rewrite_off.conf</source>
 <target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_off.conf</target>
 <target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_off.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/rewrites/loncapa_rewrite_off.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to disable rewriting of
@@ -1319,16 +1274,6 @@ utility cgi script to view software vers
 </description>
 </file>
 <file>
-<source>loncom/cgi/lonmodulecheck.pl</source>
-<target dist='default'>home/httpd/cgi-bin/lonmodulecheck.pl</target>
-<categoryname>script</categoryname>
-<description>
-utility cgi script to check for differences between currently
-installed versions of LON-CAPA modules and those expected for the
-LON-CAPA release installed on the server.
-</description>
-</file>
-<file>
 <source>loncom/cgi/ping.pl</source>
 <target dist='default'>home/httpd/cgi-bin/ping.pl</target>
 <categoryname>script</categoryname>
@@ -1527,8 +1472,6 @@ man1.jpg;
 man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
-numMultiAnswerUnordered.problem;
-numMultiAnswerUnordered.problem.meta;
 numPrePro.problem;
 numPrePro.problem.meta;
 Plot.problem.meta;
@@ -1592,15 +1535,6 @@ reaction_hint.problem.meta
 </fileglob>
 
 <file>
-  <source>loncom/interface/spellcheck.pm</source>
-  <target dist='default'>home/httpd/lib/perl/Apache/spellcheck.pm</target>
-  <categoryname>handler</categoryname>
-  <description>
-Ajax handler for the spellcheck Jquery plugin
-  </description>
-  <status>IN testing</status>
-</file>
-<file>
   <source>loncom/homework/insertlist.xml</source>
   <target dist='default'>home/httpd/lonTabs/insertlist.xml</target>
   <categoryname>static conf</categoryname>
@@ -1721,17 +1655,6 @@ List of all domains in the LON-CAPA netw
 </file>
 
 <file>
-  <source>loncom/dns_checksums.tab</source>
-  <target dist='default'>home/httpd/lonTabs/dns_checksums.tab</target>
-  <categoryname>www static conf</categoryname>
-  <description>
-File containing version numbers and checksums for most LON-CAPA perl modules,
-perl scripts, cgi scripts, daemons, and a configuration file in each
-LON-CAPA release, starting with 2.11.0.RC1
-  </description>
-</file>
-
-<file>
   <source>loncom/loncaparevs.tab</source>
   <target dist='default'>home/httpd/lonTabs/loncaparevs.tab</target>
   <categoryname>www conf</categoryname>
@@ -1751,17 +1674,6 @@ File holds paired data -- hostname:lonHo
 </file>
 
 <file>
-  <source>loncom/lonchksums.tab</source>
-  <target dist='default'>home/httpd/lonTabs/lonchksums.tab</target>
-  <categoryname>www conf</categoryname>
-  <description>
-File containing version numbers and checksums for most LON-CAPA perl modules,
-perl scripts, cgi scripts, daemons, and a configuration file for current
-server. Updated by loncron.
-  </description>
-</file>
-
-<file>
 <source>loncom/spare.tab</source>
 <target dist='default'>home/httpd/lonTabs/spare.tab</target>
 <categoryname>conf</categoryname>
@@ -1867,17 +1779,6 @@ file: nohist_courseids.db found in /home
 </description>
 </file>
 <file>
-<source>loncom/misc/checkforupdates.pl</source>
-<target dist='default'>home/httpd/perl/checkforupdates.pl</target>
-<categoryname>script</categoryname>
-<description>
-Perl script run by cron to check:
-(a) for differences between currently installed versions of LON-CAPA modules
-and those expected for the particular LON-CAPA release
-(b) if an updated LON-CAPA release is available from install.loncapa.org
-</description>
-</file>
-<file>
 <source>loncom/debugging_tools/seed_accesscount.pl</source>
 <target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
 <categoryname>script</categoryname>
@@ -2423,15 +2324,6 @@ Handler to put up simple page
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonextresedit.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonextresedit.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Handler to edit external resource.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
   <source>loncom/interface/lonpickcode.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonpickcode.pm</target>
   <categoryname>handler</categoryname>
@@ -2468,6 +2360,15 @@ Handler for a DC to pick an author from
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonpickresource.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickresource.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a resource or folder from the course contents
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonpickuser.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpickuser.pm</target>
 <categoryname>handler</categoryname>
@@ -2929,6 +2830,7 @@ system-users.gif;
 turning.gif;
 uploadscores.gif;
 uplusr.gif;
+vbkm.gif;
 verify.gif;
 wishlist.gif;
 wishlist-link.gif;
@@ -3594,9 +3496,6 @@ Auth_Options.tex;
 Authoring_Math_Editor.tex;
 Contextual_Help.tex;
 Cascading_Parameters.tex;
-Change_Colors.tex;
-Change_Discussion_Display.tex;
-Change_Password.tex;
 Course_Convert_To_CSV.tex;
 Course_Create_Class_List.tex;
 Course_Self_Enrollment.tex;
@@ -3617,25 +3516,6 @@ Generation.tex;
 Metadata_Description.tex;
 Navigation_Screen.tex;
 Parameter_Overview.tex;
-Portfolio_About.tex; 
-Portfolio_AddFiles.tex;
-Portfolio_Catalog.tex;
-Portfolio_ChangeDirectory.tex;
-Portfolio_CreateDirectory.tex;
-Portfolio_DeleteFile.tex;
-Portfolio_FileAction.tex;
-Portfolio_FileList.tex;
-Portfolio_OpenFile.tex;
-Portfolio_RenameFile.tex;
-Portfolio_ShareFile.tex;
-Portfolio_ShareFile_ChangeSetting.tex;
-Portfolio_ShareFile_Conditional.tex;
-Portfolio_ShareFile_SetAccess.tex;
-Portfolio_ShareFile_StopAccess.tex;
-Prefs_About_Me.tex;
-Prefs_Language.tex;
-Prefs_Messages.tex;
-Prefs_Screen_Name_Nickname.tex;
 Problem_Parameters.tex;
 Publishing_Copyright.tex;
 Publishing_Keywords.tex;
@@ -4209,6 +4089,14 @@ Contains a set of functions that generat
 </description>
 </file>
 <file>
+<source>loncom/interface/lonhtmlgateway.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhtmlgateway.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains a set of functions to properly parse and handle HTML input and output
+</description>
+</file>
+<file>
 <source>loncom/interface/lonspeller.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonspeller.pm</target>
 <categoryname>handler</categoryname>
@@ -4566,7 +4454,6 @@ jsMath is a Javascript solution to conve
 black.gif;
 blank.gif;
 COPYING.txt;
-FONTSVERSION;
 jsMath-BaKoMa-fonts.js;
 jsMath-autoload.html;
 jsMath-controls.html;
@@ -4595,7 +4482,7 @@ jsMath-old-browsers.js;
     Server side png fonts for use by jsMath
   </description>
   <installscript>
-commands
+commands /home/httpd/html/adm
   </installscript>
   <dependencies>
 loncom/html/adm/jsMath/commands;
@@ -4604,7 +4491,7 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 </file>
 
 <file>
-  <source>loncom/html/adm/MathJax/mathjax-MathJax-v2.1-241378e.zip</source>
+  <source>loncom/html/adm/MathJax/mathjax-MathJax-v2.0-20-g07669ac.zip</source>
   <target dist='default'>home/httpd/html/adm/MathJax</target>
   <categoryname>script</categoryname>
   <description>
@@ -4614,12 +4501,12 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
    unzipping the file, making it look cleaner in the /home/.../adm/ directory
   </description>
   <installscript>
-commands
+commands /home/httpd/html/adm/MathJax
   </installscript>
   <dependencies>
 loncom/html/adm/MathJax/commands;
 loncom/html/adm/MathJax/VERSION;
-loncom/html/adm/MathJax/mathjax-MathJax-v2.1-241378e.zip;
+loncom/html/adm/MathJax/mathjax-MathJax-v2.0-20-g07669ac.zip;
   </dependencies>
 </file>
 
@@ -4631,15 +4518,16 @@ loncom/html/adm/MathJax/mathjax-MathJax-
    HTML5/JavaScript Version of GeoGebra
   </description>
   <installscript>
-commands
+commands /home/httpd/html/adm/geogebra/web
   </installscript>
   <dependencies>
 loncom/html/adm/geogebra/commands;
 loncom/html/adm/geogebra/VERSION;
-loncom/html/adm/geogebra/geogebra_html5.tar.gz;
+loncom/html/adm/MathJax/geogebra_html5.tar.gz;
   </dependencies>
 </file>
 
+
 <file>
   <source>loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz</source>
   <target dist='default'>home/httpd/html/adm/ckeditor</target>
@@ -4649,7 +4537,7 @@ loncom/html/adm/geogebra/geogebra_html5.
    installs the loncapa config.js file
   </description>
   <installscript>
-commands
+commands /home/httpd/html/
   </installscript>
   <dependencies>
 loncom/html/adm/ckeditor/commands;
@@ -4838,7 +4726,7 @@ JQuery countdown timer javascript files
 JQuery countdown timer CSS files
   </description>
   <filenames>
-    jquery.countdown.css;
+    jquery.countdown.css
   </filenames>
 </fileglob>
 <fileglob>
@@ -4850,7 +4738,7 @@ JQuery countdown timer CSS files
 JQuery countdown timer Image file for Glowing countdown
   </description>
   <filenames>
-    countdownGlowing.gif;
+    countdownGlowing.gif
   </filenames>
 </fileglob>
 <fileglob>
@@ -4862,61 +4750,11 @@ JQuery countdown timer Image file for Gl
 JQuery countdown timer Image file for LED style countdown
   </description>
   <filenames>
-    countdownLED.png;
+    countdownLED.png
   </filenames>
 </fileglob>
 
-<!-- JQuery spellchecker plugin -->
 
-<fileglob>
-  <glob>*.js</glob>
-  <sourcedir>loncom/html/adm/spellcheck/js/</sourcedir>
-  <targetdir dist='default'>home/httpd/html/adm/spellchecker/js/</targetdir>
-  <categoryname>interface file</categoryname>
-  <description>
-    JQuery spellchecker plugin
-  </description>
-  <filenames>
-    jquery.spellchecker.min.js;
-  </filenames>
-</fileglob>
-<fileglob>
-  <glob>*.css</glob>
-  <sourcedir>loncom/html/adm/spellcheck/css/</sourcedir>
-  <targetdir dist='default'>home/httpd/html/adm/spellchecker/css/</targetdir>
-  <categoryname>interface file</categoryname>
-  <description>
-    JQuery spellchecker plugin
-  </description>
-  <filenames>
-    spellchecker.css;
-  </filenames>
-</fileglob>
-<fileglob>
-  <glob>*.png</glob>
-  <sourcedir>loncom/html/adm/spellcheck/img/</sourcedir>
-  <targetdir dist='default'>home/httpd/html/adm/spellchecker/img/</targetdir>
-  <categoryname>interface file</categoryname>
-  <description>
-    JQuery spellchecker plugin
-  </description>
-  <filenames>
-    spellchecker_shadow.png;
-    spellcheck.png;
-  </filenames>
-</fileglob>
-<fileglob>
-  <glob>*.gif</glob>
-  <sourcedir>loncom/html/adm/spellcheck/img/</sourcedir>
-  <targetdir dist='default'>home/httpd/html/adm/spellchecker/img/</targetdir>
-  <categoryname>interface file</categoryname>
-  <description>
-    JQuery spellchecker plugin
-  </description>
-  <filenames>
-    spellchecker_bg.gif;
-  </filenames>
-</fileglob>
 
 <fileglob>
   <glob>*.*</glob>
@@ -5195,6 +5033,15 @@ Handles a searches inside courses/commun
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonindexcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonindexcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Course/community Indexer
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonmysql.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonmysql.pm</target>
 <categoryname>handler</categoryname>
@@ -5485,15 +5332,6 @@ Displays the Main menu
   <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonremote.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonremote.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Handler to launch and collapse the remote control.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/interface/portfolio.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/portfolio.pm</target>
 <categoryname>handler</categoryname>
@@ -5537,15 +5375,6 @@ Creates horizontal menubar in advanced R
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/homeworkmenu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/homeworkmenu.html</target>
-<categoryname>handler</categoryname>
-<description>
-Homework remote control.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/html/res/adm/pages/chatroom.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/chatroom.html</target>
 <categoryname>handler</categoryname>
@@ -6413,7 +6242,7 @@ Domain information serving.
 <file>
 <source>loncom/mime.types</source>
 <target dist='default'>etc/httpd/conf/mime.types</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/mime.types</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/mime.types</target>
 <categoryname>www static conf</categoryname>
 <description>Expanded mime.types</description>
 </file>
@@ -6483,6 +6312,22 @@ javascript for horizontal menubar in RAT
 </description>
 </file>
 <file>
+<source>rat/client/extpickcode.html</source>
+<target dist='default'>home/httpd/html/adm/rat/extpickcode.html</target>
+<categoryname>interface file</categoryname>
+<description>
+javascript
+</description>
+</file>
+<file>
+<source>rat/client/extpickframe.html</source>
+<target dist='default'>home/httpd/html/adm/rat/extpickframe.html</target>
+<categoryname>interface file</categoryname>
+<description>
+javascript
+</description>
+</file>
+<file>
 <source>rat/client/map.html</source>
 <target dist='default'>home/httpd/html/adm/rat/map.html</target>
 <categoryname>interface file</categoryname>
@@ -7035,16 +6880,6 @@ for socket-based communication between L
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/configuration/Checksumming.pm</source>
-<target dist='default'>home/httpd/lib/perl/LONCAPA/Checksumming.pm</target>
-<categoryname>system file</categoryname>
-<description>
-Provides routine to checksum perl modules, perl scripts, cgi scripts,
-language lexicons, and static configuration file on current server
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/ConfigFileEdit.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
 <categoryname>system file</categoryname>
@@ -7080,8 +6915,6 @@ compiles/tth.so.i386.perl.5.12;
 compiles/tth.so.x86_64.perl.5.12;
 compiles/tth.so.i386.perl.5.14;
 compiles/tth.so.x86_64.perl.5.14;
-compiles/tth.so.i386.perl.5.16;
-compiles/tth.so.x86_64.perl.5.16;
 compiles/tth.so.i386.debian5;
 compiles/tth.so.x86_64.debian5
 </dependencies>
@@ -7450,61 +7283,6 @@ tmcc.tab;
 </fileglob>
 <fileglob>
 <glob>*.gif</glob>
-<sourcedir>loncom/html/adm/lonLCDfont/</sourcedir>
-<targetdir dist='default'>home/httpd/html/adm/lonLCDfont/</targetdir>
-<categoryname>graphic file</categoryname>
-<description>LON-CAPA remote control LCD font</description>
-<filenames>
-0.gif;
-1.gif;
-2.gif;
-3.gif;
-4.gif;
-5.gif;
-6.gif;
-7.gif;
-8.gif;
-9.gif;
-a.gif;
-b.gif;
-c.gif;
-d.gif;
-e.gif;
-f.gif;
-g.gif;
-h.gif;
-i.gif;
-j.gif;
-k.gif;
-l.gif;
-m.gif;
-n.gif;
-o.gif;
-p.gif;
-q.gif;
-r.gif;
-s.gif;
-t.gif;
-u.gif;
-v.gif;
-w.gif;
-x.gif;
-y.gif;
-z.gif;
-ä.gif;
-ö.gif;
-ü.gif;
-ä.gif;
-ö.gif;
-ü.gif;
-colon.gif;
-hyphen.gif;
-slash.gif;
-space.gif;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/pt/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/pt/</targetdir>
 <categoryname>graphic file</categoryname>
@@ -7534,6 +7312,7 @@ pref_pt.gif;
 prt_pt.gif;
 res_pt.gif;
 roles_pt.gif;
+sbkm_pt.gif;
 spacer_pt.gif;
 sprs_pt.gif;
 src_pt.gif;
@@ -7548,93 +7327,28 @@ vbkm_pt.gif;
 <categoryname>graphic file</categoryname>
 <description>icons used for the entire LON-CAPA user interface</description>
 <filenames>
-alnk.gif;
-anno.gif;
-anot.gif;
-anot2.gif;
-back.gif;
-bchat.gif;
-bkm.gif;
-blog.gif;
-brws.gif;
-catalog.gif;
-ccat.gif;
-ccrs.gif;
 chat.gif;
-chrt.gif;
 close-all-folders.gif;
-close-navigation.gif;
-clst.gif;
-com.gif;
-conf.gif;
-courses.gif;
-cprv.gif;
-crsconf.gif;
-cstr.gif;
-del.gif;
-dempty.gif;
 dempty.gif;
-docs.gif;
 edittoplevel.gif;
-egrd.gif;
 empty.gif;
-enrl.gif;
-eval.gif;
-fdbk.gif;
 feedback.gif;
-forw.gif;
-grds.gif;
-grps.gif;
 group.gif;
 help.gif;
 info.gif;
-keys.gif;
 ledblink.gif;
 ledgreen.gif;
 ledoff.gif;
 ledon.gif;
-ledsend.gif;
-list.gif;
-logout.gif;
-mail.gif;
 mark-discussionentries-read.gif;
-mrk.gif;
-nav.gif;
-new.gif;
 next.gif;
 nothumb.gif;
 open-all-folders.gif;
 open-first-problem.gif;
-pdfupload.gif;
-parm.gif;
-pcstr.gif;
-pgrd.gif;
-port.gif;
-pparm.gif;
-pref.gif;
-prt.gif;
-pub.gif;
 qempty.gif;
-rcrs.gif;
-refresh.gif;
-reload.gif;
-remotebg.gif;
-res.gif;
-roles.gif;
-rsrv.gif;
-rtrv.gif;
-sctr.gif;
 show-all.gif;
 show-incomplete-problems.gif;
-slnk.gif;
-spacer.gif;
-sprs.gif;
-src.gif;
-srvr.gif;
-start-navigation.gif;
-stat.gif;
-subm.gif;
-title.gif;
+star.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -7663,6 +7377,7 @@ pgrd.png;
 pref.png;
 roles.png;
 sprs.png;
+vbkm.png;
 anot.png;
 anot2.png;
 blog.png;
@@ -7679,7 +7394,7 @@ port.png;
 prt.png;
 rcrs.png;
 rsrv.png;
-slnk.png;
+sbkm.png;
 src.png;
 srvr.png;
 subm.png;
@@ -7689,7 +7404,6 @@ thumbsup_novote.png;
 thumbsdown.png;
 thumbsdown_gray.png;
 thumbsdown_novote.png;
-webpage.png;
 back.png;
 catalog.png;
 com.png;
@@ -7713,6 +7427,7 @@ mngcu.png;
 prob_ana.png;
 process-stop.png;
 role_hotlist.png;
+reload.png;
 self_enroll.png;
 survey_rep.png;
 subdocs.png;
@@ -7727,21 +7442,20 @@ uplusr.png;
 <categoryname>graphic file</categoryname>
 <description>graphical icons used in submenus</description>
 <filenames>
-alnk.png;
 aboutme.png;
 addClickerInfoFile.png;
 anonsurveythreshold.png;
+bubblesheet.png;
 ccatconf.png;
 chat.png;
 comblock.png;
 contact-new.png;
-contact-new-22x22.png;
 coprplot.png;
 crsnew.png;
 dialog-information.png;
-docs-22x22.png;
 document-open.png;
 document-properties.png;
+download_sub.png;
 dropbox.png;
 dump.png;
 edit-copy.png;
@@ -7761,6 +7475,9 @@ folder-new.png;
 folder-new-22x22.png;
 format-justify-fill.png;
 fromfile.png;
+grade_PageFolder.png;
+grade_students.png;
+grading_table.png;
 groupportfolio.png;
 groupportfolioquota.png;
 grp_add.png;
@@ -7773,7 +7490,6 @@ list-add.png;
 list-add-22x22.png;
 log.png;
 mail-message-new.png;
-mail-message-new-22x22.png;
 mail-reply-all.png;
 mail-reply-sender.png;
 messalog.png;
@@ -7789,11 +7505,11 @@ preferences-desktop-theme.png;
 preferences-desktop-wallpaper.png;
 preferences-system-windows.png;
 rcrs-22x22.png;
+receipt_number.png;
 recover.png;
 remotecontrol.png;
 resversion.png;
 role_hotlist-22x22.png;
-rsrv-22x22.png;
 save-22x22.png;
 scoreupfrm.png;
 selfenrl-queue.png;
@@ -7809,7 +7525,7 @@ symbs.png;
 system-lock-screen.png;
 system-users.png;
 timer.png;
-trck-22x22.png;
+ungrade_sub.png;
 uplcrs.png;
 uploadscores.png;
 verify.png;
@@ -7828,14 +7544,6 @@ wishlist-link-lighter.png;
 </description>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/imgmaps.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/imgmaps.html</target>
-<categoryname>interface file</categoryname>
-<description>
-image maps for the LON-CAPA remote control
-</description>
-</file>
-<file>
 <source>loncom/html/res/adm/pages/index.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/index.html</target>
 <categoryname>interface file</categoryname>
@@ -7843,14 +7551,6 @@ image maps for the LON-CAPA remote contr
 welcoming page to the LON-CAPA system upon login
 </description>
 </file>
-<file>
-<source>loncom/html/res/adm/pages/menu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/menu.html</target>
-<categoryname>interface file</categoryname>
-<description>
-renders the HTML (including image maps) for the LON-CAPA remote control
-</description>
-</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/indexericons/</sourcedir>
@@ -8082,7 +7782,7 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
-<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
@@ -8090,7 +7790,7 @@ Controls the launching/halting of lonc,
 </file>
 <link>
 <linkto dist='default'>etc/rc.d/init.d/loncontrol</linkto>
-<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/init.d/loncontrol</linkto>
+<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/init.d/loncontrol</linkto>
 <target dist='default'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
@@ -8100,7 +7800,7 @@ etc/rc.d/rc4.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
-<target='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>
+<target='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
 etc/rc.d/rc2.d/K05loncontrol;
@@ -8123,13 +7823,13 @@ symbolic links to /etc/rc.d/init.d/lonco
 </description>
 </link>
 
-<file dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 sles9 sles10 sles11">
+<file dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
   <source>loncom/init.d/loncontrol</source>
   <target>etc/rc.d/</target>
   <description>
     setup loncontrol to run at boot
   </description>
-  <installscript dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 sles9 sles10 sles11">
+  <installscript dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
 -c 'chkconfig --del loncontrol;chkconfig loncontrol 35;chkconfig --list loncontrol'
   </installscript>
   <dependencies>
@@ -8416,7 +8116,6 @@ login_count.pl;
 modify_config_files.pl;
 move_construction_spaces.pl;
 parse_scantron.pl;
-rebuild_db_from_hist.pl;
 seed_accesscount.pl;
 stress.pl;
 testkerberos.pl;