--- doc/loncapafiles/loncapafiles.lpml	2016/08/08 14:22:53	1.797.2.78
+++ doc/loncapafiles/loncapafiles.lpml	2016/09/14 23:16:05	1.940
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.797.2.78 2016/08/08 14:22:53 raeburn Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.940 2016/09/14 23:16:05 raeburn Exp $ -->
 
 <!--
 
@@ -455,6 +455,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lib/perl/Apache/math_parser</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>location of LON-CAPA math parser</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/HTML</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of HTML specific perl module fixes and additions
@@ -583,45 +589,33 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/jsMath</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>jsMath support files</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/jsMath/extensions</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>jsMath extension files</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/jsMath/uncompressed</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>jsMath files (uncompressed)</description>
+  <description>Formula editor</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/jsMath/plugins</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/reactionresponse</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>jsMath plugin files</description>
+  <description>HTML files for reactionresponse items</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/dragmath</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/quicksearch</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>Formula editor</description>
+  <description>Author space quick search</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/reactionresponse</targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/LC_math_editor </targetdir>
   <categoryname>server readonly</categoryname>
-  <description>HTML files for reactionresponse items</description>
+  <description>LON-CAPA math editor</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/LC_math_editor </targetdir>
+  <targetdir dist='default'>home/httpd/html/adm/daxe</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>LON-CAPA math editor</description>
+  <description>Daxe XML editor</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
@@ -703,7 +697,18 @@ extensions</description>
   <categoryname>server readonly</categoryname>
   <description>JQuery countdown timer</description>
 </directory>
- 
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/codemirror</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Codemirror</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/jQuery/addons</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery addons</description>
+</directory>
 <!-- JQuery spellchecker plugin -->
 
 <directory dist='default'>
@@ -822,6 +827,7 @@ interface, Apache (mod_perl) handlers</d
   <categoryname>server readonly</categoryname>
   <description>error warnings and icons</description>
 </directory>
+
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lonUsers</targetdir>
@@ -894,12 +900,6 @@ are viewable over the world-wide web</de
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/lonLCDfont</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>LCD font for remote control</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonDomLogos</targetdir>
   <categoryname>server readonly</categoryname>
   <description>Logos for LON-CAPA domains</description>
@@ -1314,12 +1314,21 @@ utility cgi script to view software vers
 <target dist='default'>home/httpd/cgi-bin/lonmodulecheck.pl</target>
 <categoryname>script</categoryname>
 <description>
-utility cgi script to check for differences between currently
-installed versions of LON-CAPA modules and those expected for the
+utility cgi script to check for differences between currently 
+installed versions of LON-CAPA modules and those expected for the 
 LON-CAPA release installed on the server.
 </description>
 </file>
 <file>
+<source>loncom/cgi/loncertstatus.pl</source>
+<target dist='default'>home/httpd/cgi-bin/loncertstatus.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to display status of LON-CAPA SSL certificates 
+installed on domain's servers
+</description>
+</file>
+<file>
 <source>loncom/cgi/ping.pl</source>
 <target dist='default'>home/httpd/cgi-bin/ping.pl</target>
 <categoryname>script</categoryname>
@@ -1878,7 +1887,7 @@ file: nohist_courseids.db found in /home
 Perl script run by cron to check:
 (a) for differences between currently installed versions of LON-CAPA modules
 and those expected for the particular LON-CAPA release
-(b) if an updated LON-CAPA release is available from install.loncapa.org
+(b) if an updated LON-CAPA release is available from install.loncapa.org  
 </description>
 </file>
 <file>
@@ -1886,7 +1895,7 @@ and those expected for the particular LO
 <target dist='default'>home/httpd/perl/debug/rebuild_lastlogin.pl</target>
 <categoryname>script</categoryname>
 <description>
-Perl script run as www to populate nohist_crslastlogin.db for course(s) on
+Perl script run as www to populate nohist_crslastlogin.db for course(s) on 
 a library server to record most recent "log-in" by each user in a course.
 
 This script is intended to be run after installation of LON-CAPA
@@ -2047,7 +2056,7 @@ routines in lonauthcgi.pm.  Display form
 <source>loncom/cgi/quotacheck.pl</source>
 <target dist='default'>home/httpd/cgi-bin/quotacheck.pl</target>
 <categoryname>script</categoryname>
-<description>CGI script to display disk usage and quota for content
+<description>CGI script to display disk usage and quota for content  
 uploaded directly to a course/community via the Course Editor.
 </description>
 </file>
@@ -2056,10 +2065,10 @@ uploaded directly to a course/community
 <target dist='default'>home/httpd/cgi-bin/enrollqueued.pl</target>
 <categoryname>script</categoryname>
 <description>CGI script to process a queued self-enrollment request
-and output a web address which should be provided as a link the
+and output a web address which should be provided as a link the 
 the student follows to access the course. Can support validation
 of self-enrollment requests on a third party system/server which
-handles payment etc.
+handles payment etc.  
 </description>
 </file>
 <file>
@@ -2073,7 +2082,7 @@ the requester follows to access the new
 has been configued to have a six character code associated with
 it, the will be output also, (e.g., for recording locally, and/or
 display to the requester). The script was implemented to support
-validation of course requests on a third party system/server which
+validation of course requests on a third party system/server which 
 handles payment etc.
 </description>
 </file>
@@ -2488,6 +2497,15 @@ Handler to edit external resource.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonexttool.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonexttool.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to allow LON-CAPA to operate as an LTI Tool Consumer 
+</description>
+<status>works/unverified</status>
+</file>
+<file>
   <source>loncom/interface/lonpickcode.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonpickcode.pm</target>
   <categoryname>handler</categoryname>
@@ -2524,6 +2542,15 @@ Handler for a DC to pick an author from
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonpickresource.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickresource.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a resource or folder from the course contents
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonpickuser.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpickuser.pm</target>
 <categoryname>handler</categoryname>
@@ -3353,6 +3380,7 @@ Course_Creation_Log.tex;
 Course_Critical_Message.tex;
 Course_Deleting.tex;
 Course_Disable_Discussion.tex;
+Course_Disable_Anonymous_Discussion.tex;
 Course_Discussion_Board.tex;
 Course_Drop_Student.tex;
 Course_Edit_Content.tex;
@@ -3470,6 +3498,7 @@ Domain_Configuration_Cataloging_Courses.
 Domain_Configuration_Color_Schemes.tex;
 Domain_Configuration_Contact_Info.tex;
 Domain_Configuration_Course_Defaults.tex;
+Domain_Configuration_Help_Settings.tex;
 Domain_Configuration_InstDirectory_Search.tex;
 Domain_Configuration_LangTZAuth.tex;
 Domain_Configuration_Load_Balancing.tex;
@@ -3482,6 +3511,7 @@ Domain_Configuration_Self_Creation.tex;
 Domain_Configuration_Selfenrollment.tex;
 Domain_Configuration_Server_Status.tex;
 Domain_Configuration_SSL.tex;
+Domain_Configuration_Trust.tex;
 Domain_Configuration_User_Creation.tex;
 Domain_Configuration_User_Modification.tex;
 Domain_Configuration_User_Sessions.tex;
@@ -3683,6 +3713,7 @@ Some_Items_Were_Not_Submitted.tex;
 Spreadsheet_About.tex;
 Spreadsheet_Calculation.tex;
 Spreadsheet_Calculation_Time.tex;
+Spreadsheet_Category_Grades.tex;
 Spreadsheet_Cell_Editing.tex;
 Spreadsheet_Editing.tex;
 Spreadsheet_Export_Row.tex;
@@ -3891,6 +3922,19 @@ status.txt;
 unicover.txt;
   </filenames>
 </fileglob>
+
+<fileglob>
+    <glob>*.js</glob>
+    <sourcedir>loncom/html/adm/quicksearch/</sourcedir>
+    <targetdir dist='default'>home/httpd/html/adm/quicksearch/</targetdir>
+    <description>
+Search to enable the quicksearch function in the author space
+    </description>
+    <filenames>
+quicksearch.js
+    </filenames>
+</fileglob>
+
 <file>
 <source>loncom/html/adm/fonts/AUTHORS</source>
 <target dist='default'>home/httpd/html/adm/fonts/AUTHORS</target>
@@ -4283,6 +4327,14 @@ loncom/build/pod2html.sh ../homework/edi
 </dependencies>
 </file>
 <file>
+<source>loncom/publisher/loncoursepub.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursepub.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for asynchronous file upload via colorful editor ("Course Authoring" space).
+</description>
+</file>
+<file>
 <source>loncom/interface/lonmeta.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonmeta.pm</target>
 <categoryname>handler</categoryname>
@@ -4692,56 +4744,32 @@ LON-CAPA math editor
   </description>
 </file>
 
-<fileglob>
-  <glob>*.*</glob>
-  <sourcedir>loncom/html/adm/jsMath/</sourcedir>
-  <targetdir dist='default'>home/httpd/html/adm/jsMath/</targetdir>
-  <categoryname>interface file</categoryname>
-  <description>
-jsMath is a Javascript solution to converting TeX to something the browser can see
-  </description>
-  <filenames>
-black.gif;
-blank.gif;
-COPYING.txt;
-FONTSVERSION;
-jsMath-BaKoMa-fonts.js;
-jsMath-autoload.html;
-jsMath-controls.html;
-jsMath-fallback-mac.js;
-jsMath-fallback-mac-mozilla.js;
-jsMath-fallback-mac-msie.js;
-jsMath-fallback-pc.js;
-jsMath-fallback-symbols.js;
-jsMath-fallback-unix.js;
-jsMath-global-controls.html;
-jsMath-global.html;
-jsMath.js;
-jsMath-loader.html;
-jsMath-loader-omniweb4.js;
-jsMath-mozilla.js;
-jsMath-msie-mac.js;
-jsMath-old-browsers.js;
-  </filenames>
-</fileglob>
-
 <file>
-  <source>loncom/html/adm/jsMath/jsMath-fonts-1.3.zip</source>
-  <target dist='default'>home/httpd/html/adm/jsMath/fonts/</target>
+  <source>loncom/html/adm/daxe/daxe.tar.gz</source>
+  <target dist='default'>home/httpd/html/adm/daxe</target>
   <categoryname>script</categoryname>
   <description>
-    Server side png fonts for use by jsMath
+   Daxe XML editor
   </description>
   <installscript>
 commands
   </installscript>
   <dependencies>
-loncom/html/adm/jsMath/commands;
-loncom/html/adm/jsMath/jsMath-fonts-1.3.zip;
+loncom/html/adm/daxe/commands;
+loncom/html/adm/daxe/daxe.tar.gz;
   </dependencies>
 </file>
 
 <file>
+  <source>loncom/javascriptlib/file_upload.js</source>
+  <target dist='default'>home/httpd/html/res/adm/includes/file_upload.js</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    JavaScript dealing with file uploads
+  </description>
+</file>
+
+<file>
   <source>loncom/html/adm/MathJax/mathjax-MathJax-v2.6.1.zip</source>
   <target dist='default'>home/httpd/html/adm/MathJax</target>
   <categoryname>script</categoryname>
@@ -4762,7 +4790,7 @@ loncom/html/adm/MathJax/mathjax-MathJax-
 </file>
 
 <file>
-  <source>loncom/html/adm/geogebra/geogebraweb_4.4.tar.gz</source>
+  <source>loncom/html/adm/geogebra/geogebraweb_5.0.tar.gz</source>
   <target dist='default'>home/httpd/html/adm/geogebra/web</target>
   <categoryname>script</categoryname>
   <description>
@@ -4774,12 +4802,12 @@ commands
   <dependencies>
 loncom/html/adm/geogebra/commands;
 loncom/html/adm/geogebra/VERSION;
-loncom/html/adm/geogebra/geogebraweb_4.4.tar.gz;
+loncom/html/adm/geogebra/geogebraweb_5.0.tar.gz;
   </dependencies>
 </file>
 
 <file>
-  <source>loncom/html/adm/ckeditor/ckeditor_3.6.6.1.tar.gz</source>
+  <source>loncom/html/adm/ckeditor/ckeditor_4.4.7.tar.gz</source>
   <target dist='default'>home/httpd/html/ckeditor</target>
   <categoryname>script</categoryname>
   <description>
@@ -4791,80 +4819,74 @@ commands
   </installscript>
   <dependencies>
 loncom/html/adm/ckeditor/commands;
-loncom/html/adm/ckeditor/ckeditor_3.6.6.1.tar.gz;
+loncom/html/adm/ckeditor/ckeditor_4.4.7.tar.gz;
 loncom/html/adm/ckeditor/loncapaconfig.js;
 loncom/html/adm/ckeditor/VERSION;
+loncom/html/adm/ckeditor/plugins/lcm/plugin.js;
+loncom/html/adm/ckeditor/plugins/lcm/dialogs/lcm.js;
+loncom/html/adm/ckeditor/plugins/lcm/icons/lcm.png;
+loncom/html/adm/ckeditor/plugins/lcm/icons/hidpi/lcm.png;
+loncom/html/adm/ckeditor/plugins/lcm/images/loader.gif;
+loncom/html/adm/ckeditor/plugins/lcm/lang/af.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/ar.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/ca.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/cs.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/cy.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/da.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/de.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/el.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/en-gb.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/en.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/eo.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/es.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/fa.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/fi.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/fr.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/gl.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/he.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/hr.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/hu.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/it.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/ja.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/km.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/ku.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/lt.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/nb.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/nl.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/no.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/pl.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/pt-br.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/pt.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/ro.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/ru.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/sk.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/sl.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/sq.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/sv.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/tr.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/tt.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/uk.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/vi.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/zh-cn.js;
+loncom/html/adm/ckeditor/plugins/lcm/lang/zh.js;
+loncom/html/adm/ckeditor/plugins/chem/plugin.js;
+loncom/html/adm/ckeditor/plugins/chem/dialogs/chem.js;
+loncom/html/adm/ckeditor/plugins/chem/icons/chem.png;
+loncom/html/adm/ckeditor/plugins/chem/icons/hidpi/chem.png;
+loncom/html/adm/ckeditor/plugins/chem/lang/de.js;
+loncom/html/adm/ckeditor/plugins/chem/lang/en.js;
+loncom/html/adm/ckeditor/plugins/chem/lang/es.js;
+loncom/html/adm/ckeditor/plugins/chem/lang/fr.js;
+loncom/html/adm/ckeditor/plugins/chem/lang/ja.js;
+loncom/html/adm/ckeditor/plugins/chem/lang/pt-br.js;
+loncom/html/adm/ckeditor/plugins/chem/lang/pt.js;
+loncom/html/adm/ckeditor/plugins/chem/lang/ru.js;
+loncom/html/adm/ckeditor/plugins/chem/lang/zh-cn.js;
+loncom/html/adm/ckeditor/plugins/chem/lang/zh.js;
   </dependencies>
 </file>
 
 <fileglob>
-  <glob>*.*</glob>
-  <sourcedir>loncom/html/adm/jsMath/extensions/</sourcedir>
-  <targetdir dist='default'>home/httpd/html/adm/jsMath/extensions/</targetdir>
-  <categoryname>interface file</categoryname>
-  <description>
-Additional jsMath functionality that can be used when needed.
-  </description>
-  <filenames>
-AMSmath.js;
-AMSsymbols.js;
-HTML.js;
-bbox.js;
-font.js;
-boldsymbol.js;
-double-click.js;
-fbox.js;
-leaders.js;
-mathchoice.js;
-mimeTeX.js;
-moreArrows.js;
-newcommand.js;
-underset-overset.js;
-  </filenames>
-</fileglob>
-
-<fileglob>
-  <glob>*.*</glob>
-  <sourcedir>loncom/html/adm/jsMath/plugins/</sourcedir>
-  <targetdir dist='default'>home/httpd/html/adm/jsMath/plugins/</targetdir>
-  <categoryname>interface file</categoryname>
-  <description>
-jsMath is a Javascript solution to converting TeX to something the browser can see
-  </description>
-  <filenames>
-autoload.js;
-CHMmode.js;
-global.js;
-mimeTeX.js;
-noCache.js;
-noGlobal.js;
-noImageFonts.js;
-smallFonts.js;
-spriteImageFonts.js;
-tex2math.js;
-  </filenames>
-</fileglob>
-
-<fileglob>
-  <glob>*.*</glob>
-  <sourcedir>loncom/html/adm/jsMath/uncompressed/</sourcedir>
-  <targetdir dist='default'>home/httpd/html/adm/jsMath/uncompressed/</targetdir>
-  <categoryname>interface file</categoryname>
-  <description>
-the jsMath source files not compressed for increasing download speed (not used by lon-capa directly)
-  </description>
-  <filenames>
-def.js;
-font.js;
-jsMath-fallback-mac.js;
-jsMath-fallback-pc.js;
-jsMath-fallback-symbols.js;
-jsMath-fallback-unix.js;
-jsMath.js;
-  </filenames>
-</fileglob>
-
-<fileglob>
   <glob>*.js</glob>
   <sourcedir>loncom/html/adm/jpicker/</sourcedir>
   <targetdir dist='default'>home/httpd/html/adm/jpicker/js/</targetdir>
@@ -4923,8 +4945,8 @@ JQuery countdown timer javascript files
   <filenames>
     jquery.countdown-ar.js;
     jquery.countdown-bg.js;
-    jquery.countdown-bs.js;
     jquery.countdown-bn.js;
+    jquery.countdown-bs.js;
     jquery.countdown-ca.js;
     jquery.countdown-cs.js;
     jquery.countdown-cy.js;
@@ -5011,7 +5033,19 @@ JQuery countdown timer Image file for LE
     countdownLED.png;
   </filenames>
 </fileglob>
-
+<fileglob>
+    <glob>*.*</glob>
+    <sourcedir>loncom/html/adm/jQuery/addons/</sourcedir>
+    <targetdir>home/httpd/html/adm/jQuery/addons/</targetdir>
+    <categoryname>script</categoryname>
+    <description>
+Addons for jQuery
+    </description>
+    <filenames>
+      jquery-scrolltofixed.js;
+      jquery.viewport.mini.js;
+    </filenames>
+</fileglob>
 <!-- JQuery spellchecker plugin -->
 
 <fileglob>
@@ -5064,6 +5098,7 @@ JQuery countdown timer Image file for LE
   </filenames>
 </fileglob>
 
+
 <fileglob>
   <glob>*.*</glob>
   <sourcedir>loncom/html/adm/jQuery/js/</sourcedir>
@@ -5144,6 +5179,22 @@ jQuery nicescroll plugin image
   </filenames>
 </fileglob>
 
+<fileglob>
+    <glob>*.*</glob>
+    <sourcedir>loncom/html/adm/codemirror/</sourcedir>
+    <targetdir>home/httpd/html/adm/codemirror/</targetdir>
+    <categoryname>script</categoryname>
+    <description>
+Codemirror for xml editor and script blocks in colorful editor
+    </description>
+    <filenames>
+    codemirror-combined.css;
+    codemirror-combined-xml.css;
+    codemirror-compressed-colorful.js;
+    codemirror-compressed-xml.js;
+    </filenames>
+</fileglob>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -5369,6 +5420,15 @@ Handles a searches inside courses/commun
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonindexcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonindexcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Course/community Indexer
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonmysql.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonmysql.pm</target>
 <categoryname>handler</categoryname>
@@ -5659,22 +5719,22 @@ Displays the Main menu
   <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonremote.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonremote.pm</target>
+<source>loncom/interface/portfolio.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/portfolio.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Handler to launch and collapse the remote control.
+Handler to manage user portfolios
 </description>
-<status>works/unverified</status>
+<status>unverified</status>
 </file>
 <file>
-<source>loncom/interface/portfolio.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/portfolio.pm</target>
+<source>loncom/interface/lonplacementtest.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonplacementtest.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Handler to manage user portfolios
+Placement test status and completion.
 </description>
-<status>unverified</status>
+<status>works/unverified</status>
 </file>
 <file>
 <source>rat/lonpageflip.pm</source>
@@ -5711,15 +5771,6 @@ Creates horizontal menubar in advanced R
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/homeworkmenu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/homeworkmenu.html</target>
-<categoryname>handler</categoryname>
-<description>
-Homework remote control.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/html/res/adm/pages/chatroom.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/chatroom.html</target>
 <categoryname>handler</categoryname>
@@ -6050,6 +6101,240 @@ handles request to the CAPA homework pro
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/loncapamath.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/loncapamath.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    lm element implementation, using the math parser package
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/units.json</source>
+  <target dist='default'>home/httpd/lonTabs/units.json</target>
+  <categoryname>static conf</categoryname>
+  <description>
+    Math parser: units
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/constants.json</source>
+  <target dist='default'>home/httpd/lonTabs/constants.json</target>
+  <categoryname>static conf</categoryname>
+  <description>
+    Math parser: constants
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/CalcEnv.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/CalcEnv.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: Calculation environment
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/CalcException.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/CalcException.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: Calculation exception
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/Definitions.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/Definitions.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: Operator definitions
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/ENode.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/ENode.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: Parsed tree node.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/Operator.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/Operator.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: Parser operator
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/ParseException.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/ParseException.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: Parse exception
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/Parser.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/Parser.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: Equation parser
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/QInterval.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/QInterval.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: An interval of quantities
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/QIntervalUnion.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/QIntervalUnion.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: A union of possibly disjoint intervals
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/QMatrix.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/QMatrix.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: A matrix of quantities
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/QSet.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/QSet.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: A set of quantities
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/Quantity.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/Quantity.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: A quantity (value and units)
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/QVector.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/QVector.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: A vector of quantities
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/Token.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/Token.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: A parser token.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/Tokenizer.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/Tokenizer.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: String tokenizer
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/math_parser/Units.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/math_parser/Units.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Math parser: Loads and converts units
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/daxepage.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/daxepage.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler displaying Daxe and the problem preview
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/daxeopen.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/daxeopen.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler sending a file for Daxe, converting problems if necessary
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/daxesave.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/daxesave.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler saving a file edited with Daxe
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/cleanxml/pre_xml.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/pre_xml.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    First step to clean a file before Daxe editing.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/cleanxml/html_to_xml.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/html_to_xml.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Second step to clean a file before Daxe editing.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/cleanxml/post_xml.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/post_xml.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Third step to clean a file before Daxe editing.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/cleanxml/xml_to_loncapa.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/xml_to_loncapa.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+    Takes a well-formed XML file content and converts it to LON-CAPA syntax.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/Safe.pm</source>
 <target dist='default'>home/httpd/lib/perl/Safe.pm</target>
 <categoryname>handler</categoryname>
@@ -7133,6 +7418,16 @@ dependency on Config.pm (not usable in S
   <status>works/verified</status>
 </file>
 <file>
+  <source>loncom/LWPReq.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LWPReq.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     Wrapper for LWP UserAgent to support enabling/disabling certificate
+     verification and/or hostname validation on any of LWP 5.83X and LWP 6.X 
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
   <source>loncom/Lond.pm</source>
   <target dist='default'>home/httpd/lib/perl/LONCAPA/Lond.pm</target>
   <categoryname>system file</categoryname>
@@ -7229,6 +7524,16 @@ language lexicons, and static configurat
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/configuration/SSL.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/SSL.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Provides routine to generate display of status of LON-CAPA SSL certificates
+installed on domain's servers.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/ConfigFileEdit.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
 <categoryname>system file</categoryname>
@@ -7641,61 +7946,6 @@ tmcc.tab;
 </fileglob>
 <fileglob>
 <glob>*.gif</glob>
-<sourcedir>loncom/html/adm/lonLCDfont/</sourcedir>
-<targetdir dist='default'>home/httpd/html/adm/lonLCDfont/</targetdir>
-<categoryname>graphic file</categoryname>
-<description>LON-CAPA remote control LCD font</description>
-<filenames>
-0.gif;
-1.gif;
-2.gif;
-3.gif;
-4.gif;
-5.gif;
-6.gif;
-7.gif;
-8.gif;
-9.gif;
-a.gif;
-b.gif;
-c.gif;
-d.gif;
-e.gif;
-f.gif;
-g.gif;
-h.gif;
-i.gif;
-j.gif;
-k.gif;
-l.gif;
-m.gif;
-n.gif;
-o.gif;
-p.gif;
-q.gif;
-r.gif;
-s.gif;
-t.gif;
-u.gif;
-v.gif;
-w.gif;
-x.gif;
-y.gif;
-z.gif;
-ä.gif;
-ö.gif;
-ü.gif;
-ä.gif;
-ö.gif;
-ü.gif;
-colon.gif;
-hyphen.gif;
-slash.gif;
-space.gif;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/pt/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/pt/</targetdir>
 <categoryname>graphic file</categoryname>
@@ -7725,6 +7975,7 @@ pref_pt.gif;
 prt_pt.gif;
 res_pt.gif;
 roles_pt.gif;
+sbkm_pt.gif;
 spacer_pt.gif;
 sprs_pt.gif;
 src_pt.gif;
@@ -7739,93 +7990,29 @@ vbkm_pt.gif;
 <categoryname>graphic file</categoryname>
 <description>icons used for the entire LON-CAPA user interface</description>
 <filenames>
-alnk.gif;
-anno.gif;
-anot.gif;
-anot2.gif;
-back.gif;
-bchat.gif;
-bkm.gif;
-blog.gif;
-brws.gif;
-catalog.gif;
-ccat.gif;
-ccrs.gif;
 chat.gif;
-chrt.gif;
 close-all-folders.gif;
-close-navigation.gif;
-clst.gif;
-com.gif;
-conf.gif;
-courses.gif;
-cprv.gif;
-crsconf.gif;
-cstr.gif;
-del.gif;
-dempty.gif;
 dempty.gif;
-docs.gif;
 edittoplevel.gif;
-egrd.gif;
 empty.gif;
-enrl.gif;
-eval.gif;
-fdbk.gif;
 feedback.gif;
-forw.gif;
-grds.gif;
-grps.gif;
 group.gif;
 help.gif;
 info.gif;
-keys.gif;
 ledblink.gif;
 ledgreen.gif;
 ledoff.gif;
 ledon.gif;
-ledsend.gif;
-list.gif;
-logout.gif;
-mail.gif;
 mark-discussionentries-read.gif;
-mrk.gif;
-nav.gif;
-new.gif;
 next.gif;
 nothumb.gif;
 open-all-folders.gif;
 open-first-problem.gif;
-pdfupload.gif;
-parm.gif;
-pcstr.gif;
-pgrd.gif;
-port.gif;
-pparm.gif;
-pref.gif;
-prt.gif;
-pub.gif;
 qempty.gif;
-rcrs.gif;
 refresh.gif;
-reload.gif;
-remotebg.gif;
-res.gif;
-roles.gif;
-rsrv.gif;
-rtrv.gif;
-sctr.gif;
 show-all.gif;
 show-incomplete-problems.gif;
-slnk.gif;
-spacer.gif;
-sprs.gif;
-src.gif;
-srvr.gif;
-start-navigation.gif;
-stat.gif;
-subm.gif;
-title.gif;
+star.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -7870,7 +8057,6 @@ port.png;
 prt.png;
 rcrs.png;
 rsrv.png;
-slnk.png;
 src.png;
 srvr.png;
 subm.png;
@@ -7904,6 +8090,7 @@ mngcu.png;
 prob_ana.png;
 process-stop.png;
 role_hotlist.png;
+reload.png;
 self_enroll.png;
 survey_rep.png;
 subdocs.png;
@@ -7918,10 +8105,10 @@ uplusr.png;
 <categoryname>graphic file</categoryname>
 <description>graphical icons used in submenus</description>
 <filenames>
-alnk.png;
 aboutme.png;
 addClickerInfoFile.png;
 anonsurveythreshold.png;
+bubblesheet.png;
 ccatconf.png;
 ccat-22x22.png;
 chat.png;
@@ -7934,6 +8121,7 @@ dialog-information.png;
 docs-22x22.png;
 document-open.png;
 document-properties.png;
+download_sub.png;
 dropbox.png;
 dump.png;
 edit-copy.png;
@@ -7953,6 +8141,9 @@ folder-new.png;
 folder-new-22x22.png;
 format-justify-fill.png;
 fromfile.png;
+grade_PageFolder.png;
+grade_students.png;
+grading_table.png;
 groupportfolio.png;
 groupportfolioquota.png;
 grp_add.png;
@@ -7981,6 +8172,7 @@ preferences-desktop-theme.png;
 preferences-desktop-wallpaper.png;
 preferences-system-windows.png;
 rcrs-22x22.png;
+receipt_number.png;
 recover.png;
 remotecontrol.png;
 resversion.png;
@@ -8002,6 +8194,7 @@ system-lock-screen.png;
 system-users.png;
 timer.png;
 trck-22x22.png;
+ungrade_sub.png;
 uplcrs.png;
 uploadscores.png;
 verify.png;
@@ -8020,14 +8213,6 @@ wishlist-link-lighter.png;
 </description>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/imgmaps.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/imgmaps.html</target>
-<categoryname>interface file</categoryname>
-<description>
-image maps for the LON-CAPA remote control
-</description>
-</file>
-<file>
 <source>loncom/html/res/adm/pages/index.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/index.html</target>
 <categoryname>interface file</categoryname>
@@ -8035,14 +8220,6 @@ image maps for the LON-CAPA remote contr
 welcoming page to the LON-CAPA system upon login
 </description>
 </file>
-<file>
-<source>loncom/html/res/adm/pages/menu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/menu.html</target>
-<categoryname>interface file</categoryname>
-<description>
-renders the HTML (including image maps) for the LON-CAPA remote control
-</description>
-</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/indexericons/</sourcedir>
@@ -8585,7 +8762,7 @@ Module for displaying the wishlist.</des
 <target dist='default'>home/httpd/lib/perl/Apache/lonrelrequtils.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Utilities to update information about LON-CAPA version requirements
+Utilities to update information about LON-CAPA version requirements 
 in a course.</description>
 <status>works/unverified</status>
 </file>