--- doc/loncapafiles/loncapafiles.lpml	2002/08/14 18:12:52	1.163
+++ doc/loncapafiles/loncapafiles.lpml	2003/03/14 22:03:22	1.223
@@ -1,9 +1,8 @@
 <!DOCTYPE lpml PUBLIC "-//TUX/DTD lpml 1.0 Final//EN"
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
-<!-- Scott Harrison -->
 
-<!-- $Id: loncapafiles.lpml,v 1.163 2002/08/14 18:12:52 harris41 Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.223 2003/03/14 22:03:22 albertel Exp $ -->
 
 <!--
 
@@ -140,6 +139,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>systemfile</abbreviation>
 </category>
+<category name="system script" type="runtime">
+  <chmod dist='default'>0755</chmod><chown dist='default'>root:root</chown>
+  <abbreviation>systemscript</abbreviation>
+</category>
+<category name="system script" type="development">
+  <chmod dist='default'>0755</chmod><chown dist='default'>root:root</chown>
+  <abbreviation>systemscript</abbreviation>
+</category>
 <category name="root script" type="runtime">
   <chmod dist='default'>0700</chmod><chown dist='default'>root:root</chown>
   <abbreviation>rootscript</abbreviation>
@@ -221,102 +228,114 @@ echo '**********************************
 </rpm>
 <directories>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for configuration files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/cron.d</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for running time-based "jobs"
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf</targetdir>
   <categoryname>standard</categoryname>
   <description>web configuration files</description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>etc/ntp</targetdir>
-  <categoryname>standard</categoryname>
-  <description>configuration directory for network time protocol</description>
-</directory>
-<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/pam.d</targetdir>
   <categoryname>standard</categoryname>
   <description>configuration directory for password authentication mechanism
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
   <targetdir dist='debian'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
   <targetdir dist='debian'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
   <targetdir dist='debian'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
   <targetdir dist='debian'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
   <targetdir dist='debian'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
   <targetdir dist='debian'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
   <targetdir dist='debian'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
   <targetdir dist='debian'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lonTabs</targetdir>
   <categoryname>standard</categoryname>
   <description>tab-formatted reference files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd</targetdir>
   <categoryname>standard</categoryname>
   <description>start of the web server tree</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl</targetdir>
   <categoryname>server readonly</categoryname>
   <description>perl scripts for managing the LON-CAPA system</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl/logs</targetdir>
   <categoryname>server standard</categoryname>
   <description>location where system performance and error logs are kept
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/lon-status/londchld</targetdir>
   <categoryname>server standard</categoryname>
   <description>
@@ -325,122 +344,146 @@ Used by lond parent to check if children
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl/tmp</targetdir>
   <categoryname>server standard</categoryname>
   <description>location where temporary files (for caching) are stored
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/prtspool</targetdir>
   <categoryname>server standard</categoryname>
   <description>for the output of lonprintout.pm
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA software modules and
 extensions</description>
 </directory>
 <directory dist='default'>
+  <!-- Must protect localauth.pm from extinction. -->
+  <protectionlevel>weak_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA non web mod-perl handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/Apache</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA web mod-perl handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/HTML</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of HTML specific perl module fixes and additions
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/LONCAPA</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of HTML specific perl module fixes and additions
   </description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>home/httpd/lonIDs</targetdir>
+   <protectionlevel>modest_delete</protectionlevel>
+ <targetdir dist='default'>home/httpd/lonIDs</targetdir>
   <categoryname>server standard</categoryname>
   <description>cookie jar</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/sockets</targetdir>
   <categoryname>server standard</categoryname>
   <description>lonc's sockets</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/sockets/delayed</targetdir>
   <categoryname>server standard</categoryname>
   <description>lonc's sockets (delayed)</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/cgi-bin</targetdir>
   <categoryname>standard</categoryname>
   <description>location of cgi scripts</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html</targetdir>
   <categoryname>server standard</categoryname>
   <description>location of web-accessible file tree</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res</targetdir>
   <categoryname>server standard</categoryname>
   <description>root of resource tree</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/userfiles</targetdir>
   <categoryname>server standard</categoryname>
   <description>root for user uploaded files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm</targetdir>
   <categoryname>server readonly</categoryname>
   <description>unauthenticated resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/rat</targetdir>
   <categoryname>server readonly</categoryname>
   <description>home of the rat</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/gif</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation gif files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/eps</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation eps files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/tex</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation tex files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/png</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation png files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/lib/perl</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation for the LON-CAPA programming
 interface</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/lib/perl/Apache
   </targetdir>
   <categoryname>server readonly</categoryname>
@@ -448,27 +491,32 @@ interface</description>
 interface, Apache (mod_perl) handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/scripts</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation for the LON-CAPA programming
 interface, Apache (mod_perl) handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonIcons</targetdir>
   <categoryname>server readonly</categoryname>
   <description>graphic widgets</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonMisc</targetdir>
   <categoryname>server readonly</categoryname>
   <description>miscellaneous resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonKaputt</targetdir>
   <categoryname>server readonly</categoryname>
   <description>error warnings and icons</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lonUsers</targetdir>
   <categoryname>server standard</categoryname>
   <description>Home directories of local users.  There is a five-tier
@@ -484,57 +532,85 @@ roles.db) which specify the roles and pr
 LON-CAPA system.</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/MathML</targetdir>
   <categoryname>server readonly</categoryname>
   <description>mathematics markup language resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/includes</targetdir>
   <categoryname>server readonly</categoryname>
   <description>files useful for including within customized scripting
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/includes/templates
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description>template files useful for customized scripts</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/lon-status</targetdir>
   <categoryname>server standard</categoryname>
   <description>status reports; online logs are kept that
 are viewable over the world-wide web</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages</targetdir>
   <categoryname>server readonly</categoryname>
   <description>web user interface resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonLCDfont</targetdir>
   <categoryname>server readonly</categoryname>
   <description>LCD font for remote control</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/lonDomLogos</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Logos for LON-CAPA domains</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lonTabs/lonDomColors</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Designs for LON-CAPA domains</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/lonInterFace</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Page headers and graphical interface files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/bookmarkmenu
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description>bookmark user interface code</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/annotations
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description></description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/indexericons
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description>icons that help depict the file system (outdated)</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
   <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
@@ -543,37 +619,50 @@ are viewable over the world-wide web</de
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>usr/local/loncapa/bin</targetdir>
   <categoryname>standard</categoryname>
   <description>local binary files for loncapa</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>usr/local/loncapa/doc</targetdir>
   <categoryname>standard</categoryname>
   <description>local documentation files for loncapa</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>usr/local/loncapa/doc/conf_examples</targetdir>
   <categoryname>standard</categoryname>
   <description>examples of configuration files for secondary
  services</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>usr/local/loncapa/sbin</targetdir>
+  <categoryname>standard</categoryname>
+  <description>local "auxiliary" binary files for loncapa</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/local/man/man1</targetdir>
   <categoryname>standard</categoryname>
   <description>local manual pages</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/man/man1</targetdir>
   <categoryname>standard</categoryname>
   <description>manual pages</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/man/man3</targetdir>
   <categoryname>standard</categoryname>
   <description>manual pages</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/sbin</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for superuser executables</description>
@@ -582,8 +671,8 @@ are viewable over the world-wide web</de
 <files>
 <file>
 <source>loncom/krb.conf</source>
-<target dist='default'>etc/krb.conf</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/krb.conf</target>
+<categoryname>static conf</categoryname>
 <description>
 which Kerberos server to contact for specified Kerberos domains
 </description>
@@ -672,7 +761,7 @@ the www@localhost MySQL password, and br
 This file provides initializations for perl handlers.  It adjusts what
 the module path space is (so as to include /home/httpd/lib/perl/Apache) as
 well as causing the Apache module to be used for every perl handler.
-<tt>startup.pl</tt> is invoked by <tt>access.conf</tt>.
+<tt>startup.pl</tt> is invoked by <tt>loncapa_apache.conf</tt>.
 </description>
 </file>
 <file>
@@ -714,8 +803,8 @@ Descriptive list of file extensions and
 </description>
 </file>
 <file>
-<source>loncom/cgi/barcode.gif</source>
-<target dist='default'>home/httpd/cgi-bin/barcode.gif</target>
+<source>loncom/cgi/barcode.png</source>
+<target dist='default'>home/httpd/cgi-bin/barcode.png</target>
 <categoryname>script</categoryname>
 <description>
 Dynamically outputs a barcode based on a CGI passed encode=BARCODEVALUE
@@ -755,8 +844,8 @@ utility cgi script to view status of per
 </description>
 </file>
 <file>
-<source>loncom/cgi/graph.gif</source>
-<target dist='default'>home/httpd/cgi-bin/graph.gif</target>
+<source>loncom/cgi/graph.png</source>
+<target dist='default'>home/httpd/cgi-bin/graph.png</target>
 <categoryname>script</categoryname>
 <description>
 Dynamically outputs a graph especially for lonstatistics.pm.
@@ -791,6 +880,14 @@ Dynamically outputs X-Y plots with point
 </description>
 </file>
 <file>
+<source>loncom/cgi/imagechoice.pl</source>
+<target dist='default'>home/httpd/cgi-bin/imagechoice.pl</target>
+<categoryname>script</categoryname>
+<description>
+Helper to select image coordinates in writing homework involving images.
+</description>
+</file>
+<file>
 <source>loncom/interface/printout.pl</source>
 <target dist='default'>home/httpd/cgi-bin/printout.pl</target>
 <categoryname>script</categoryname>
@@ -821,6 +918,16 @@ coil,loop,field,magnetic
 and simply prints this text-only (no markup) to the browser
 </description>
 </file>
+<file>
+<source>loncom/cgi/metadata_harvest.pl</source>
+<target dist='default'>home/httpd/cgi-bin/metadata_harvest.pl</target>
+<categoryname>script</categoryname>
+<description>
+a cgi-script (not mod_perl), which contacts MySQL and pulls
+out all records in "|"-separated format.
+To be used by very simple harvesting engines.
+</description>
+</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/homework/templates/</sourcedir>
@@ -862,7 +969,13 @@ script.library.meta;
 SimpleFormula.problem;
 SimpleFormula.problem.meta;
 StringResponse.problem;
-StringResponse.problem.meta
+StringResponse.problem.meta;
+SimpleMatching.problem;
+SimpleMatching.problem.meta;
+SimpleRank.problem;
+SimpleRank.problem.meta;
+SimpleTrueFalse.problem;
+SimpleTrueFalse.problem.meta
 </filenames>
 </fileglob>
 <file>
@@ -940,6 +1053,14 @@ List of all machines in the LON-CAPA net
 </description>
 </file>
 <file>
+<source>loncom/domain.tab</source>
+<target dist='default'>home/httpd/lonTabs/domain.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+List of all domains in the LON-CAPA network. Lists the name name of the domain and any default authentication.
+</description>
+</file>
+<file>
 <source>loncom/spare.tab</source>
 <target dist='default'>home/httpd/lonTabs/spare.tab</target>
 <categoryname>conf</categoryname>
@@ -970,7 +1091,7 @@ Basic auth password to access /lon-statu
 <file>
 <source>loncom/smb.conf</source>
 <target dist='default'>usr/local/loncapa/doc/conf_examples/smb.conf</target>
-<categoryname>conf</categoryname>
+<categoryname>static conf</categoryname>
 <description>
 configuration file to make LON-CAPA server file space accessible to network
 neighborhood
@@ -978,8 +1099,8 @@ neighborhood
 </file>
 <file>
 <source>loncom/ntp.conf</source>
-<target dist='default'>etc/ntp.conf</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/ntp.conf</target>
+<categoryname>static conf</categoryname>
 <description>
 which NTP server to contact for information (XNTP3 standard)
 </description>
@@ -1011,6 +1132,23 @@ Batch script for removing temporary tabl
 </description>
 </file>
 <file>
+<source>loncom/misc/cleanup_prtspool.pl</source>
+<target dist='default'>home/httpd/perl/cleanup_prtspool.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for removing files not accessed within 24 hours from the 
+/home/httpd/prtspool directory.
+</description>
+</file>
+<file>
+<source>loncom/lonhttpd</source>
+<target dist='default'>home/httpd/perl/lonhttpd</target>
+<categoryname>script</categoryname>
+<description>
+Small fry httpd on port 8080
+</description>
+</file>
+<file>
 <source>loncom/lonc</source>
 <target dist='default'>home/httpd/perl/lonc</target>
 <categoryname>script</categoryname>
@@ -1093,12 +1231,24 @@ echo 'pod2html lond'
 </dependencies>
 </file>
 <file>
+<source>loncom/build/CHECKRPMS</source>
+<target dist='default'>home/httpd/cgi-bin/CHECKRPMS</target>
+<categoryname>script</categoryname>
+<description>CGI script that checks status of RPMs</description>
+</file>
+<file>
 <source>loncom/cgi/loncron.pl</source>
 <target dist='default'>home/httpd/cgi-bin/loncron.pl</target>
 <categoryname>script</categoryname>
 <description>CGI script that starts and pipes output of loncron</description>
 </file>
 <file>
+<source>loncom/cgi/userstatus.pl</source>
+<target dist='default'>home/httpd/cgi-bin/userstatus.pl</target>
+<categoryname>script</categoryname>
+<description>CGI script that shows users currently on machine</description>
+</file>
+<file>
 <source>loncom/loncron</source>
 <target dist='default'>home/httpd/perl/loncron</target>
 <categoryname>script</categoryname>
@@ -1217,6 +1367,22 @@ GNU General Public License.  Long live t
 </description>
 </file>
 <file>
+<source>loncom/license/httpi.license</source>
+<target dist='default'>home/httpd/html/adm/httpi.license</target>
+<categoryname>interface file</categoryname>
+<description>
+HTTPi webserver license
+</description>
+</file>
+<file>
+<source>loncom/license/httpi.readme</source>
+<target dist='default'>home/httpd/html/adm/httpi.readme</target>
+<categoryname>interface file</categoryname>
+<description>
+HTTPi webserver readme 
+</description>
+</file>
+<file>
 <source>loncom/license/about.html</source>
 <target dist='default'>home/httpd/html/adm/about.html</target>
 <categoryname>interface file</categoryname>
@@ -1242,6 +1408,22 @@ Interface file for responding to imprope
 </description>
 </file>
 <file>
+<source>loncom/html/adm/overloaded.txt</source>
+<target dist='default'>home/httpd/html/adm/overloaded.txt</target>
+<categoryname>interface file</categoryname>
+<description>
+Interface file for responding to overload situations.
+</description>
+</file>
+<file>
+<source>loncom/html/adm/loginproblems.html</source>
+<target dist='default'>home/httpd/html/adm/loginproblems.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Help page for login problems.
+</description>
+</file>
+<file>
 <source>loncom/xml/physnet.sty</source>
 <target dist='default'>home/httpd/html/res/adm/includes/physnet.sty</target>
 <categoryname>static conf</categoryname>
@@ -1349,6 +1531,51 @@ Handler to put up announcements and cale
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonsyllabus.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsyllabus.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up syllabus
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonsimplepage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsimplepage.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up simple page
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickstudent.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickstudent.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a student from classlist
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonbulletin.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonbulletin.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up bulletin board
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonaboutme.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonaboutme.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up personal info
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/loncfile.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncfile.pm</target>
 <categoryname>handler</categoryname>
@@ -1366,7 +1593,13 @@ construction space menu.
 The .tex file help handler.
 </description>
 <status>works/unverified</status>
-<build trigger='always run'>loncom/build/buildHelp.sh</build>
+<build trigger='always run'>
+loncom/html/adm/help/buildMakeWrapper
+</build>
+<dependencies>
+Makefile;
+buildMakeWrapper
+</dependencies>
 </file>
 <file>
 <source>loncom/html/adm/help/abouthelp.html</source>
@@ -1399,6 +1632,17 @@ manual online, with a somewhat clumsy in
 <status>works/unverified</status>
 </file>
 <file>
+<source>doc/help/course.instructor.access.tex</source>
+<target dist='default'>home/httpd/html/adm/help/tex/course.instructor.access.tex
+</target>
+<categoryname>interface file</categoryname>
+<description>
+The pseudo-LaTeX file to allow people to read the course instructor's
+manual online, with a somewhat clumsy interface.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/help/author.manual.ps</source>
 <target dist='default'>home/httpd/html/adm/help/author.manual.ps</target>
 <categoryname>interface file</categoryname>
@@ -1406,6 +1650,17 @@ manual online, with a somewhat clumsy in
 The postscript Author's Manual
 </description>
 <status>works/unverified</status>
+<dependencies>
+doc/help/author.manual.texxml;
+doc/help/latexSplitter.py;
+doc/help/rebuildLabelHash.pl;
+doc/help/render.texxml.pl;
+doc/help/simpleEdit.py;
+doc/help/texxml2indextex.pl;
+doc/help/texxml2latex.pl;
+loncom/build/buildHelp.sh;
+loncom/build/help_graphics_converter.pl
+</dependencies>
 </file>
 <file>
 <source>doc/help/author.manual.pdf</source>
@@ -1424,6 +1679,17 @@ The PDF Author's Manual
 The postscript Course Manual
 </description>
 <status>works/unverified</status>
+<dependencies>
+doc/help/course.manual.texxml;
+doc/help/latexSplitter.py;
+doc/help/rebuildLabelHash.pl;
+doc/help/render.texxml.pl;
+doc/help/simpleEdit.py;
+doc/help/texxml2indextex.pl;
+doc/help/texxml2latex.pl;
+loncom/build/buildHelp.sh;
+loncom/build/help_graphics_converter.pl
+</dependencies>
 </file>
 <file>
 <source>doc/help/course.manual.pdf</source>
@@ -1434,6 +1700,24 @@ The PDF Course Manual
 </description>
 <status>works/unverified</status>
 </file>
+<file>
+<source>doc/help/course.instructor.ps</source>
+<target dist='default'>home/httpd/html/adm/help/course.instructor.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+The postscript Course Instructor Manual
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>doc/help/course.instructor.pdf</source>
+<target dist='default'>home/httpd/html/adm/help/course.instructor.pdf</target>
+<categoryname>interface file</categoryname>
+<description>
+The PDF Course Instructor Manual
+</description>
+<status>works/unverified</status>
+</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/html/adm/help/gif/</sourcedir>
@@ -1456,6 +1740,7 @@ dynamic_plot2.gif;
 formulaResponse.gif;
 login.gif;
 lonhelpheader.gif;
+mainCourseDocuments.gif;
 mapAdvancedEditorNew.gif;
 mapClickedStart.gif;
 mapEditFirstClick.gif;
@@ -1507,6 +1792,7 @@ dynamic_plot2.eps;
 formulaResponse.eps;
 lonhelpheader.eps;
 login.eps;
+mainCourseDocuments.eps;
 mapAdvancedEditorNew.eps;
 mapClickedStart.eps;
 mapEditFirstClick.eps;
@@ -1573,6 +1859,7 @@ Course_Drop_Student.tex;
 Course_Edit_Content.tex;
 Course_Feedback_Addresses.tex;
 Course_Homework_Performance_Overview.tex;
+Course_Manual_Title_Page.tex;
 Course_Message_Access.tex;
 Course_Problem_Weight.tex;
 Course_Setting_Parameters.tex;
@@ -1583,17 +1870,30 @@ Creating_A_Course_Intro.tex;
 Creating_New_Content_Pages.tex;
 Creating_Online_Problems.tex;
 Creating_Radio_Response_Problems.tex;
+Docs_Adding_Course_Doc.tex;
+Docs_Adding_External_Resource.tex;
+Docs_Adding_Folders.tex;
+Docs_Creating_From_Template.tex;
+Docs_Importing_LON-CAPA_Resource.tex;
+Docs_Main_Course_Documents.tex;
+Docs_Navigate_Content.tex;
+Docs_Overview.tex;
+Docs_Supplemental.tex;
+Docs_Uploading_From_Harddrive.tex;
 Foils.tex;
 Formula_Response_Example.tex;
 Formula_Response_Limitations.tex;
 Formula_Response_Problems.tex;
 Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
+General_Intro.tex;
+Greek_Symbols.tex;
 How_To_Edit_Existing_Content_Pages.tex;
 Latex_Footer.tex;
 Latex_Header.tex;
 Login_To_LON-CAPA.tex;
 Metadata_Description.tex;
+Navmap_Host_Down.tex;
 Numerical_Response_Advanced_Example.tex;
 Numerical_Response_Format.tex;
 Numerical_Response_Intro.tex;
@@ -1612,6 +1912,8 @@ Option_Response_Problem_Figure.tex;
 Option_Response_Problem_Parts.tex;
 Option_Response_Problems.tex;
 Option_Response_Simple.tex;
+Other_Symbols.tex;
+Part_Tag_Edit_Help.tex;
 Problem_Editor_Testing_Area.tex;
 Problem_Editor_XML_Index.tex;
 Problem_Types.tex;
@@ -1620,6 +1922,7 @@ Publishing_Author_Tutorial_Segue.tex;
 Publishing_Copyright.tex;
 Publishing_Intro.tex;
 Publishing_Keywords.tex;
+Quick_Grades_Possibly_Correct.tex;
 Radio_Response_Problems.tex;
 Radio_Response_Randomization.tex;
 Resource_Types.tex;
@@ -1643,7 +1946,6 @@ Spreadsheet_Functions.tex;
 Spreadsheet_Import_Values.tex;
 Spreadsheet_Levels.tex;
 Spreadsheet_Lists.tex;
-Spreadsheet_Manual_Title_Page.tex;
 Spreadsheet_Max_Depth_Exceeded.tex;
 Spreadsheet_OOO_Rows.tex;
 Spreadsheet_Op_On_All_Problem_Parts.tex;
@@ -1695,6 +1997,16 @@ The module that generate the html for th
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/statistics/lonpercentage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpercentage.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the Percentage graph web pages.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/statistics/lonproblemanalysis.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonproblemanalysis.pm
 </target>
@@ -1724,6 +2036,15 @@ Handler to show difference between two f
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/publisher/lonrights.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrights.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to show and edit custom distribution rights
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/lonupload.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonupload.pm</target>
 <categoryname>handler</categoryname>
@@ -1799,6 +2120,14 @@ Handler to publish directories.
 </description>
 </file>
 <file>
+<source>loncom/publisher/lonunauthorized.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonunauthorized.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to explain failed contruction space access.
+</description>
+</file>
+<file>
 <source>doc/man/Apache__lonpubdir.3</source>
 <target dist='default'>usr/man/man3/Apache::lonpubdir.3</target>
 <categoryname>doc</categoryname>
@@ -2126,6 +2455,24 @@ Handles navigational maps.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonwizard.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwizard.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Wizard framework.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonquickgrades.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonquickgrades.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Student quick grades interface.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonpreferences.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpreferences.pm</target>
 <categoryname>handler</categoryname>
@@ -2554,6 +2901,30 @@ implements &lt;script&gt;, &lt;scriptlib
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/homework/randomlylabel.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/randomlylabel.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for compositing images, and text together.
+</description>
+</file>
+<file>
+<source>loncom/homework/rankresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/rankresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for rankresponse
+</description>
+</file>
+<file>
+<source>loncom/homework/matchresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/matchresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for matchresponse
+</description>
+</file>
+<file>
 <source>loncom/homework/randomlabel.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/randomlabel.pm</target>
 <categoryname>handler</categoryname>
@@ -2622,10 +2993,12 @@ a way that does not threaten the operati
 </file>
 <file>
 <source>loncom/auth/localauth.pm</source>
-<target dist='default'>home/httpd/lib/perl/localauth.pm</target>
+<target dist='default'>home/httpd/lib/perl/localauth-std.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Local authentication mechanism (meant to be customized).
+Local authentication mechanism.  The target file is meant as a template
+for a localauth.pm file.  The target file with the -std suffix is not
+used directly by any software program; it is just a template file.
 </description>
 <status>works/unverified</status>
 </file>
@@ -2955,6 +3328,12 @@ loncom/build/pod2html.sh ../lonnet/perl/
 <categoryname>interface file</categoryname>
 <description>bumps to login</description>
 </file>
+<file>
+<source>loncom/html/favicon.ico</source>
+<target dist='default'>home/httpd/html/favicon.ico</target>
+<categoryname>interface file</categoryname>
+<description>Bookmark and tab icon</description>
+</file>
 <link>
 <linkto>etc/mime.types</linkto>
 <target dist='default'>etc/httpd/conf/mime.types</target>
@@ -3018,6 +3397,22 @@ javascript
 </description>
 </file>
 <file>
+<source>rat/client/extpickcode.html</source>
+<target dist='default'>home/httpd/html/adm/rat/extpickcode.html</target>
+<categoryname>interface file</categoryname>
+<description>
+javascript
+</description>
+</file>
+<file>
+<source>rat/client/extpickframe.html</source>
+<target dist='default'>home/httpd/html/adm/rat/extpickframe.html</target>
+<categoryname>interface file</categoryname>
+<description>
+javascript
+</description>
+</file>
+<file>
 <source>rat/client/map.html</source>
 <target dist='default'>home/httpd/html/adm/rat/map.html</target>
 <categoryname>interface file</categoryname>
@@ -3033,6 +3428,14 @@ bumper
 A blank page with very minimal HTML structural elements.
 </description>
 </file>
+<file>
+<source>rat/client/loading.html</source>
+<target dist='default'>home/httpd/html/adm/rat/loading.html</target>
+<categoryname>interface file</categoryname>
+<description>
+A blank page which calls drawwindow in its opener after being loaded.
+</description>
+</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>rat/images/</sourcedir>
@@ -3183,6 +3586,7 @@ SMETE_white.gif;
 aboutlon.gif;
 accessbutton.gif;
 arrow_up.gif;
+branch.gif;
 cab.gif;
 cab_big.gif;
 capapanel.gif;
@@ -3234,6 +3638,11 @@ mov.gif;
 mov_big.gif;
 move_up.gif;
 move_down.gif;
+navmap.correct.gif;
+navmap.open.gif;
+navmap.wrong.gif;
+navmap.folder.open.gif;
+navmap.folder.closed.gif;
 page.gif;
 page_big.gif;
 pdf.gif;
@@ -3261,6 +3670,7 @@ survey.gif;
 survey_big.gif;
 tex.gif;
 tex_big.gif;
+tth.gif;
 txt.gif;
 txt_big.gif;
 unknown.gif;
@@ -3418,6 +3828,7 @@ README;
 Makefile.PL;
 capa.i;
 commands;
+../../../CAPA/pProj/Makefile;
 ../../../CAPA/pProj/capaGrammarDef.y;
 ../../../CAPA/pProj/capaFormula.y;
 ../../../CAPA/pProj/capaLexerDef.flex;
@@ -3532,6 +3943,77 @@ Define unit prefixing and conversion for
 </description>
 </file>
 <fileglob>
+<glob>*.jpg</glob>
+<sourcedir>loncom/html/adm/lonInterFace/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonInterFace/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Pages headers</description>
+<filenames>
+admin.jpg;
+author.jpg;
+coordinator.jpg;
+header.jpg;
+student.jpg;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/adm/lonDomLogos/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonDomLogos/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Logos of LON-CAPA domains</description>
+<filenames>
+103.gif;
+gerd.gif;
+mio.gif;
+msuvu.gif;
+ohiou.gif;
+rhs.gif;
+sfu.gif;
+tmcc.gif;
+umich.gif;
+worf.gif;
+annarbor.gif;
+elps.gif;
+gwu.gif;
+msudemo.gif;
+ndsu.gif;
+physnet.gif;
+sc.gif;
+Selwyn.gif;
+ucf.gif;
+unihalle.gif;
+wscc.gif;
+cps.gif;
+fsu.gif;
+lsd.gif;
+msu.gif;
+nsdl.gif;
+pmm.gif;
+sunysb.gif;
+udel.gif;
+uz.gif;
+fvl.gif;
+glps.gif;
+headersfu.gif;
+uwsp.gif
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.tab</glob>
+<sourcedir>loncom/html/adm/lonDomColors/</sourcedir>
+<targetdir dist='default'>home/httpd/lonTabs/lonDomColors/</targetdir>
+<categoryname>conf</categoryname>
+<description>Designs of LON-CAPA domains</description>
+<filenames>
+annarbor.tab;
+default.tab;
+msu.tab;
+sfu.tab;
+worf.tab
+</filenames>
+</fileglob>
+<fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/adm/lonLCDfont/</sourcedir>
 <targetdir dist='default'>home/httpd/html/adm/lonLCDfont/</targetdir>
@@ -3830,9 +4312,18 @@ javascript for handling client-side inte
 </description>
 </file>
 <file>
+<source>loncom/build/CHECKRPMS</source>
+<target dist='default'>usr/local/loncapa/bin/CHECKRPMS</target>
+<categoryname>system script</categoryname>
+<description>
+manilla wrapper around check-rpms
+</description>
+<status>tested/documented/beta</status>
+</file>
+<file>
 <source>loncom/build/check-rpms</source>
 <target dist='default'>usr/local/loncapa/bin/check-rpms</target>
-<categoryname>root script</categoryname>
+<categoryname>system script</categoryname>
 <description>
 compare installed rpms with up-to-date distribution
 </description>
@@ -3869,12 +4360,14 @@ loncom/build/pod2html.sh check-rpms &gt;
 </file>
 <file>
 <source>loncom/build/loncaparestoreconfigurations</source>
-<target dist='default'>usr/sbin/loncaparestoreconfigurations</target>
+<target dist='default'>usr/local/loncapa/sbin/loncaparestoreconfigurations
+</target>
 <categoryname>script</categoryname>
 <description>
-restores .rpmsave files after a LON-CAPA-base upgrade
+Updates .lpmlnew files with previous settings.  Also supports alternative
+schemes of settings-updating and file-overwriting.
 </description>
-<status>deprecated</status>
+<status>works/unverified</status>
 </file>
 <file>
 <source>loncom/cron/loncapa</source>
@@ -3886,8 +4379,9 @@ file that specifies periodic processes t
 </file>
 <file>
 <source>loncom/ntp/step-tickers</source>
-<target dist='default'>etc/ntp/step-tickers</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/ntp_step-tickers
+</target>
+<categoryname>static conf</categoryname>
 <description>
 file that stimulates running of ntpdate upon init.d/xntpd initiation
 </description>
@@ -3939,7 +4433,7 @@ symbolic links to /etc/rc.d/init.d/lonco
 <file>
 <source>loncom/atalk/config</source>
 <target dist='default'>usr/local/loncapa/doc/conf_examples/config</target>
-<categoryname>conf</categoryname>
+<categoryname>static conf</categoryname>
 <description>
 configuration file to make LON-CAPA server file space accessible to
 Appleshares access (Macintosh)