--- doc/loncapafiles/loncapafiles.lpml	2003/05/02 20:12:33	1.238
+++ doc/loncapafiles/loncapafiles.lpml	2004/04/08 18:09:28	1.312.2.4
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.238 2003/05/02 20:12:33 www Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.312.2.4 2004/04/08 18:09:28 albertel Exp $ -->
 
 <!--
 
@@ -99,6 +99,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0444</chmod><chown dist='default'>root:root</chown>
   <abbreviation>static</abbreviation>
 </category>
+<category name="www static conf" type="runtime">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>static</abbreviation>
+</category>
+<category name="www static conf" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>static</abbreviation>
+</category>
 <category name="conf" type="runtime">
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>configurable</abbreviation>
@@ -365,7 +373,7 @@ Used by lond parent to check if children
 extensions</description>
 </directory>
 <directory dist='default'>
-  <!-- Must protect localauth.pm from extinction. -->
+  <!-- Must protect localauth.pm/localenroll.pm from extinction. -->
   <protectionlevel>weak_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl</targetdir>
   <categoryname>server readonly</categoryname>
@@ -379,6 +387,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lib/perl/Apache/localize</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>location of LON-CAPA MakeText translation files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/HTML</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of HTML specific perl module fixes and additions
@@ -459,6 +473,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jme</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JME support files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/helper</targetdir>
   <categoryname>server readonly</categoryname>
   <description>XML specifications for helpers</description>
@@ -551,6 +571,13 @@ LON-CAPA system.</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/lib/templates</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Resource library
+  </description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/includes</targetdir>
   <categoryname>server readonly</categoryname>
   <description>files useful for including within customized scripting
@@ -578,6 +605,18 @@ are viewable over the world-wide web</de
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/adm/pages/pt</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>web user interface resources - Portuguese</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>web user interface resources</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonLCDfont</targetdir>
   <categoryname>server readonly</categoryname>
   <description>LCD font for remote control</description>
@@ -625,7 +664,7 @@ are viewable over the world-wide web</de
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
-  <targetdir dist='redhat8'>usr/lib/perl5/site_perl/5.8.0</targetdir>
+  <targetdir dist='redhat8 redhat9'>usr/lib/perl5/site_perl/5.8.0</targetdir>
   <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
@@ -784,7 +823,7 @@ well as causing the Apache module to be
 <description>
 Thesaurus database file to be built from loncom/thesaurus/rawkey.txt
 </description>
-<build trigger='run if dependencies change'>
+<build trigger='always run'>
 loncom/thesaurus/build_thesaurus_wrapper.sh
 </build>
 <dependencies>
@@ -825,6 +864,30 @@ parameter.
 </description>
 </file>
 <file>
+<source>loncom/cgi/decompress.pl</source>
+<target dist='default'>home/httpd/cgi-bin/decompress.pl</target>
+<categoryname>script</categoryname>
+<description>
+Decompresses an archive into its files inside of the construction space
+</description>
+</file>
+<file>
+<source>loncom/cgi/takeoffline.pl</source>
+<target dist='default'>home/httpd/cgi-bin/takeoffline.pl</target>
+<categoryname>script</categoryname>
+<description>
+Take machine offline
+</description>
+</file>
+<file>
+<source>loncom/cgi/takeonline.pl</source>
+<target dist='default'>home/httpd/cgi-bin/takeonline.pl</target>
+<categoryname>script</categoryname>
+<description>
+Take machine online
+</description>
+</file>
+<file>
 <source>loncom/cgi/thumbnail.gif</source>
 <target dist='default'>home/httpd/cgi-bin/thumbnail.gif</target>
 <categoryname>script</categoryname>
@@ -841,6 +904,14 @@ utility cgi script to view status of clu
 </description>
 </file>
 <file>
+<source>loncom/cgi/translator.pl</source>
+<target dist='default'>home/httpd/cgi-bin/translator.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to enter translations
+</description>
+</file>
+<file>
 <source>loncom/build/system_dependencies/perltest.pl</source>
 <target dist='default'>home/httpd/cgi-bin/perltest.pl</target>
 <categoryname>script</categoryname>
@@ -857,6 +928,14 @@ utility cgi script to view status of per
 </description>
 </file>
 <file>
+  <source>loncom/cgi/loncgi.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/loncgi.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a common interface to LON-CAPA cookies and environment.
+  </description>
+</file>
+<file>
 <source>loncom/cgi/graph.png</source>
 <target dist='default'>home/httpd/cgi-bin/graph.png</target>
 <categoryname>script</categoryname>
@@ -941,6 +1020,38 @@ out all records in "|"-separated format.
 To be used by very simple harvesting engines.
 </description>
 </file>
+<file>
+<source>loncom/homework/simpleproblem.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/simpleproblem.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for DOCS "Simple Problem"
+</description>
+</file>
+<file>
+<source>loncom/homework/simpleproblem.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/simpleproblem.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for DOCS "Simple Problem"
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/examupload.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/examupload.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for score upload
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/examupload.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/examupload.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for score upload
+</description>
+</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/homework/templates/</sourcedir>
@@ -955,8 +1066,14 @@ blank.library;
 blank.library.meta;
 blank.problem;
 blank.problem.meta;
+ClickImageExample.problem;
+ClickImageExample.problem.meta;
 Essay.problem;
 Essay.problem.meta;
+examupload.problem;
+examupload.problem.meta;
+man1.jpg;
+man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
 Plot.problem;
@@ -977,6 +1094,7 @@ SelectFromOptions-8ConceptGoups.problem;
 SelectFromOptions-8ConceptGoups.problem.meta;
 SelectFromOptions-Simple.problem;
 SelectFromOptions-Simple.problem.meta;
+SimpleStringResponse.problem.meta;
 script.library;
 script.library.meta;
 SimpleFormula.problem;
@@ -1012,8 +1130,8 @@ Built from Glabel.java.  Still working o
 </note>
 </file>
 <file>
-<source>loncom/interface/default.assesscalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.assesscalc
+<source>loncom/interface/spreadsheet/default_assesscalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_assesscalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -1021,8 +1139,8 @@ Default spreadsheet for individual asses
 </description>
 </file>
 <file>
-<source>loncom/interface/default.studentcalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.studentcalc
+<source>loncom/interface/spreadsheet/default_studentcalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_studentcalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -1030,8 +1148,8 @@ Default spreadsheet for assessment of st
 </description>
 </file>
 <file>
-<source>loncom/interface/default.classcalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.classcalc
+<source>loncom/interface/spreadsheet/default_classcalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_classcalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -1056,19 +1174,19 @@ Descriptive list of abbreviations used i
 and privileges available in the network with function
 </description>
 </file>
-<file>
+<file type="private">
 <source>loncom/hosts.tab</source>
 <target dist='default'>home/httpd/lonTabs/hosts.tab</target>
-<categoryname>static conf</categoryname>
+<categoryname>www static conf</categoryname>
 <description>
 List of all machines in the LON-CAPA network.  Relates <tt>lonHostID</tt> to
 <tt>lonDefDomain</tt> and <u>IP address</u>.
 </description>
 </file>
-<file>
+<file type="private">
 <source>loncom/domain.tab</source>
 <target dist='default'>home/httpd/lonTabs/domain.tab</target>
-<categoryname>static conf</categoryname>
+<categoryname>www static conf</categoryname>
 <description>
 List of all domains in the LON-CAPA network. Lists the name name of the domain and any default authentication.
 </description>
@@ -1096,7 +1214,7 @@ in <tt>access.conf</tt>
 <file>
 <source>loncom/htpasswd</source>
 <target dist='default'>home/httpd/lonTabs/htpasswd</target>
-<categoryname>conf</categoryname>
+<categoryname>static conf</categoryname>
 <description>
 Basic auth password to access /lon-status and /server-status
 </description>
@@ -1154,6 +1272,15 @@ Batch script for removing files not acce
 </description>
 </file>
 <file>
+<source>loncom/debugging_tools/seed_accesscount.pl</source>
+<target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for moving access count data from nohist_resevaldata.db to
+nohist_accesscount.db.
+</description>
+</file>
+<file>
 <source>loncom/lonhttpd</source>
 <target dist='default'>home/httpd/perl/lonhttpd</target>
 <categoryname>script</categoryname>
@@ -1421,6 +1548,15 @@ Interface file for responding to imprope
 </description>
 </file>
 <file>
+<source>loncom/html/adm/notinit.html</source>
+<target dist='default'>home/httpd/html/adm/notinit.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Interface file for responding to accessing uploaded resources without
+re-initializing course.
+</description>
+</file>
+<file>
 <source>loncom/html/adm/overloaded.txt</source>
 <target dist='default'>home/httpd/html/adm/overloaded.txt</target>
 <categoryname>interface file</categoryname>
@@ -1561,6 +1697,15 @@ Handler to put up syllabus
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/homework/lonsimpleproblemedit.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsimpleproblemedit.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to set parameters for simple homework problems
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonsimplepage.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsimplepage.pm</target>
 <categoryname>handler</categoryname>
@@ -1662,17 +1807,6 @@ manual online, with a somewhat clumsy in
 <status>works/unverified</status>
 </file>
 <file>
-<source>doc/help/course.instructor.access.tex</source>
-<target dist='default'>home/httpd/html/adm/help/tex/course.instructor.access.tex
-</target>
-<categoryname>interface file</categoryname>
-<description>
-The pseudo-LaTeX file to allow people to read the course instructor's
-manual online, with a somewhat clumsy interface.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>doc/help/author.manual.ps</source>
 <target dist='default'>home/httpd/html/adm/help/author.manual.ps</target>
 <categoryname>interface file</categoryname>
@@ -1730,24 +1864,6 @@ The PDF Course Manual
 </description>
 <status>works/unverified</status>
 </file>
-<file>
-<source>doc/help/course.instructor.ps</source>
-<target dist='default'>home/httpd/html/adm/help/course.instructor.ps</target>
-<categoryname>interface file</categoryname>
-<description>
-The postscript Course Instructor Manual
-</description>
-<status>works/unverified</status>
-</file>
-<file>
-<source>doc/help/course.instructor.pdf</source>
-<target dist='default'>home/httpd/html/adm/help/course.instructor.pdf</target>
-<categoryname>interface file</categoryname>
-<description>
-The PDF Course Instructor Manual
-</description>
-<status>works/unverified</status>
-</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/html/adm/help/gif/</sourcedir>
@@ -1863,22 +1979,65 @@ Tex files for the help system
 </description>
 <filenames>
 About_Authors_Manual.tex;
+About_Communication.tex;
+About_Developers_Manual.tex;
 About_Numerical_and_Formula_Response.tex;
 Ambiguous_Reference.tex;
+Analyze_Problem.tex;
+Analysis_Analyze_Over.tex;
+Analysis_Analyze_as.tex;
+Analysis_num_plots.tex;
+Annotation.tex;
+Authentication.tex;
 Author_LON-CAPA_Introduction.tex;
 Author_Manual_Title_Page.tex;
 Author_Numerical_and_Formula.tex;
 Author_Remote_Control.tex;
 Authoring_Adding_Pictures.tex;
+Authoring_DataResponse.tex;
 Authoring_Dynamic_Plot.tex;
+Authoring_ExternalResponse.tex;
+Authoring_Foil_Structure_Tags.tex;
 Authoring_HTML_vs_Tex.tex;
+Authoring_Hint_Tags.tex;
+Authoring_ImageResponse.tex;
+Authoring_Input_Tags.tex;
+Authoring_Internal_Tags.tex;
 Authoring_M_Tag.tex;
+Authoring_NumericalResponse.tex;
+Authoring_OptionResponse.tex;
+Authoring_Output_Tags.tex;
+Authoring_Pictures_EPS.tex;
 Authoring_Piecewise_Plot.tex;
+Authoring_RadiobuttonResponse.tex;
+Authoring_Response_Attributes.tex;
+Authoring_Response_Tag_Intro.tex;
+Authoring_Responseparam_Parameter.tex;
+Authoring_Scripting_Tags.tex;
+Authoring_Structure_Tags.tex;
+Authoring_XML_Intro.tex;
+Bookmarks.tex;
+Bugzilla.tex;
+CAPA_LON-CAPA_function_diffs.tex;
+Caching.tex;
+Calendar_Add_Announcement.tex;
+Calendar_Remove_Announcement.tex;
 Calling_Functions.tex;
+Cascading_Parameters.tex;
+Change_Colors.tex;
+Change_Password.tex;
+Chart_Description.tex;
+Chart_Output_Data.tex;
+Chart_Output_Formats.tex;
+Chatting.tex;
 Coauthor.tex;
 Construction_Space_Overview.tex;
+Course_Add_Other.tex;
 Course_Add_Student.tex;
+Course_Broadcast_Message.tex;
+Course_Change_Privileges.tex;
 Course_Chart_To_Excel.tex;
+Course_Chat.tex;
 Course_Convert_To_CSV.tex;
 Course_Create_Class_List.tex;
 Course_Critical_Message.tex;
@@ -1887,41 +2046,74 @@ Course_Disable_Discussion.tex;
 Course_Discussion_Board.tex;
 Course_Drop_Student.tex;
 Course_Edit_Content.tex;
+Course_Editing_Custom_Roles.tex;
+Course_Extending_Due_Dates.tex;
+Course_Face_To_Face_Records.tex;
 Course_Feedback_Addresses.tex;
 Course_Homework_Performance_Overview.tex;
 Course_Manual_Title_Page.tex;
+Course_Manually_Grade_Problem.tex;
+Course_Maximum_Collaborators.tex;
 Course_Message_Access.tex;
+Course_Modify_Student_Data.tex;
+Course_Parameter_Levels.tex;
 Course_Problem_Weight.tex;
+Course_Set_Start_End_Date.tex;
 Course_Setting_Parameters.tex;
 Course_Student_Grade_Override.tex;
 Course_Student_Work.tex;
 Course_Toplevel_Seq.tex;
+Course_User_Evaluation.tex;
+Course_User_Parameter.tex;
+Course_View_Class_List.tex;
+Create_Course.tex;
 Creating_A_Course_Intro.tex;
 Creating_New_Content_Pages.tex;
 Creating_Online_Problems.tex;
 Creating_Radio_Response_Problems.tex;
+Developer_Manual_Title_Page.tex;
+Developer_Tutorial.tex;
+Docs_About_Bulletin_Board.tex;
+Docs_About_My_Personal_Info.tex;
+Docs_About_Simple_Page.tex;
+Docs_About_Syllabus.tex;
 Docs_Adding_Course_Doc.tex;
 Docs_Adding_External_Resource.tex;
 Docs_Adding_Folders.tex;
+Docs_Adding_Syllabus.tex;
+Docs_Alternatives.tex;
 Docs_Creating_From_Template.tex;
+Docs_Editing_Templated_Pages.tex;
 Docs_Importing_LON-CAPA_Resource.tex;
+Docs_Load_Map.tex;
 Docs_Main_Course_Documents.tex;
 Docs_Navigate_Content.tex;
 Docs_Overview.tex;
+Docs_Score_Upload_Form.tex;
 Docs_Supplemental.tex;
 Docs_Uploading_From_Harddrive.tex;
+Finding_Resources.tex;
 Foils.tex;
+Formula_Response_Adv_Intro.tex;
 Formula_Response_Example.tex;
 Formula_Response_Limitations.tex;
 Formula_Response_Problems.tex;
-Formula_Response_Adv_Intro.tex;
 Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
 General_Intro.tex;
 Greek_Symbols.tex;
+Guts_Apache.tex;
+Guts_Apache_Env.tex;
+Guts_Apache_Modules.tex;
+Guts_Authentication.tex;
+Guts_Authoring.tex;
+Guts_Coding_Guidelines.tex;
+Guts_Course_Dir.tex;
+Guts_User_Dir.tex;
 How_To_Edit_Existing_Content_Pages.tex;
 Latex_Footer.tex;
 Latex_Header.tex;
+Leaving_Feedback.tex;
 Login_To_LON-CAPA.tex;
 Metadata_Description.tex;
 Navmap_Host_Down.tex;
@@ -1945,8 +2137,14 @@ Option_Response_Problems.tex;
 Option_Response_Simple.tex;
 Other_Symbols.tex;
 Part_Tag_Edit_Help.tex;
+Personal_Info_Page.tex;
+Physical_Units.tex;
+Prefs_Forwarding.tex;
+Prefs_Screen_Name_Nickname.tex;
+Print_Resource.tex;
 Problem_Editor_Testing_Area.tex;
 Problem_Editor_XML_Index.tex;
+Problem_LON-CAPA_Functions.tex;
 Problem_Types.tex;
 Publishing_A_Resource.tex;
 Publishing_Author_Tutorial_Segue.tex;
@@ -1956,9 +2154,16 @@ Publishing_Keywords.tex;
 Quick_Grades_Possibly_Correct.tex;
 Radio_Response_Problems.tex;
 Radio_Response_Randomization.tex;
+Ranking_Problems.tex;
+Receipt.tex;
+Resource_Discussion.tex;
 Resource_Types.tex;
+Roles_About.tex;
+Script_Functions.tex;
 Script_Tutorial_Intro.tex;
+Script_Variables.tex;
 Scripting_Help.tex;
+Sending_Email.tex;
 Sequence_Advanced_Editor_Creation.tex;
 Sequence_Definition.tex;
 Sequence_Editor_Selection.tex;
@@ -1967,36 +2172,44 @@ Sequence_Simple_Editor_Creation.tex;
 Sequence_Top-Level.tex;
 Significant_Figures.tex;
 Spreadsheet_About.tex;
-Spreadsheet_Alternative_View.tex;
-Spreadsheet_Changes_To_Grading.tex;
-Spreadsheet_Col_Sum.tex;
-Spreadsheet_Completely_Recalc.tex;
-Spreadsheet_Empty_Rows.tex;
+Spreadsheet_Calculation.tex;
+Spreadsheet_Calculation_Time.tex;
+Spreadsheet_Cell_Editing.tex;
+Spreadsheet_Editing.tex;
 Spreadsheet_Export_Row.tex;
+Spreadsheet_Files.tex;
 Spreadsheet_Functions.tex;
-Spreadsheet_Import_Values.tex;
+Spreadsheet_Hierarchy.tex;
+Spreadsheet_HowTo_Assessments.tex;
+Spreadsheet_HowTo.tex;
+Spreadsheet_Layout.tex;
 Spreadsheet_Levels.tex;
-Spreadsheet_Lists.tex;
 Spreadsheet_Max_Depth_Exceeded.tex;
-Spreadsheet_OOO_Rows.tex;
-Spreadsheet_Op_On_All_Problem_Parts.tex;
 Spreadsheet_Parms.tex;
 Spreadsheet_Problem_Weight.tex;
-Spreadsheet_Ranges.tex;
-Spreadsheet_Specifying_Cells.tex;
+Spreadsheet_Referencing_Cells.tex;
+Spreadsheet_Referencing_Parameters.tex;
+Spreadsheet_Row_Numbers.tex;
+Spreadsheet_Student_View.tex;
 Spreadsheet_Student_Visible.tex;
-Spreadsheet_Symbolic_Names.tex;
 Spreadsheet_Template_Row.tex;
 Spreadsheet_Ternary_Operator.tex;
 Spreadsheet_Tries.tex;
 String_Response_Problem_Creation.tex;
 String_Response_Problems.tex;
+Syllabus_ExtLink.tex;
+Syllabus_URLs.tex;
 Tolerance.tex;
+Uploaded_Templates_PublicView.tex;
+Uploaded_Templates_TextBoxes.tex;
 Variable_Naming_Conventions.tex;
 Variable_Tutorial_A.tex;
 Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
-Variables_in_the_Text_Block.tex
+Variables_in_the_Text_Block.tex;
+What_Is_LON-CAPA.tex;
+Why_LON-CAPA.tex;
+all_functions_table.tex;
 </filenames>
 </fileglob>
 <file>
@@ -2043,7 +2256,17 @@ The module that generate the html for th
 </target>
 <categoryname>handler</categoryname>
 <description>
-The module that generate the html for the Problem Analysis web pages.
+This module provides detailed analysis and raw data for submissions of various problem types.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonsubmissiontimeanalysis.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsubmissiontimeanalysis.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+This module produces plots of the times of students attempts on an assessment.
 </description>
 <status>works/unverified</status>
 </file>
@@ -2329,6 +2552,43 @@ Contains a set of functions that generat
 </description>
 </file>
 <file>
+<source>loncom/localize/lonlocal.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonlocal.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains the &mt access function to Locale::Maketext
+</description>
+</file>
+<file>
+<source>loncom/localize/localize.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/localize.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Localization class for Locale::Maketext
+</description>
+</file>
+<fileglob>
+<glob>*.pm</glob>
+<sourcedir>loncom/localize/localize/</sourcedir>
+<targetdir dist='default'>
+home/httpd/lib/perl/Apache/localize/</targetdir>
+<categoryname>static conf</categoryname>
+<description>
+Translation files.
+</description>
+<filenames>
+de.pm;
+pt.pm;
+fr.pm;
+ja.pm;
+tr.pm;
+ru.pm;
+fa.pm;
+ar.pm;
+es.pm;
+</filenames>
+</fileglob>
+<file>
 <source>loncom/interface/loncoursedata.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncoursedata.pm</target>
 <categoryname>handler</categoryname>
@@ -2408,6 +2668,43 @@ assignment.
 </description>
 <status>works/unverified</status>
 </file>
+
+<file>
+  <source>loncom/homework/chemresponse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/chemresponse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handle the tags organicresponse/structure and reationresponse
+  </description>
+  <status>works/unverified</status>
+</file>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jme/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jme/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JME files, for editing organic structures
+  </description>
+  <filenames>
+JME.jar;
+jme.gif;
+jme_help.html;
+nitro.gif;
+smiles.gif
+  </filenames>
+</fileglob>
+
+<file>
+  <source>loncom/homework/convertjme.pl</source>
+  <target dist='default'>home/httpd/cgi-bin/convertjme.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Dynamically converts JME strings into either a png or ps file.
+  </description>
+</file>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -2535,6 +2832,15 @@ Parameter setting helper.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/html/adm/helper/course.initialization.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/course.initialization.helper</target>
+<categoryname>handler</categoryname>
+<description>
+Course initialization helper.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonquickgrades.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonquickgrades.pm</target>
 <categoryname>handler</categoryname>
@@ -2657,13 +2963,49 @@ problems and assignments.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonspreadsheet.pm</source>
+<source>loncom/interface/spreadsheet/lonspreadsheet.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonspreadsheet.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Spreadsheets are completely web-based.
-They exist on the level of a whole course, a student, and individual
-assessments.
+The top level interface for the display and editing of spreadsheets.  There
+are three levels of spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/Spreadsheet.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/Spreadsheet.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the parent object of each spreadsheet type (classcalc, studentcalc,
+assesscalc).
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/classcalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/classcalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the course level spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/studentcalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/studentcalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the student level spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/assesscalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/assesscalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the assessment level spreadsheet.
 </description>
 <status>works/unverified</status>
 </file>
@@ -2990,6 +3332,15 @@ implements &lt;script&gt;, &lt;scriptlib
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/languagetags.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/languagetags.pm</target>
+<categoryname>handler</categoryname>
+<description>
+implements &lt;mt&gt;
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/homework/randomlylabel.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/randomlylabel.pm</target>
 <categoryname>handler</categoryname>
@@ -3081,15 +3432,24 @@ a way that does not threaten the operati
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/auth/localauth.pm</source>
-<target dist='default'>home/httpd/lib/perl/localauth-std.pm</target>
-<categoryname>handler</categoryname>
-<description>
+  <source>loncom/auth/localauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localauth-std.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
 Local authentication mechanism.  The target file is meant as a template
 for a localauth.pm file.  The target file with the -std suffix is not
 used directly by any software program; it is just a template file.
-</description>
-<status>works/unverified</status>
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/localauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localauth.pm</target>
+  <categoryname>conf</categoryname>
+  <description>
+Local authentication mechanism.  
+  </description>
+  <status>works/unverified</status>
 </file>
 <file>
 <source>loncom/auth/lonacc.pm</source>
@@ -3418,6 +3778,12 @@ loncom/build/pod2html.sh ../lonnet/perl/
 <description>bumps to login</description>
 </file>
 <file>
+<source>loncom/html/index.html</source>
+<target dist='default'>home/httpd/html/origindex.html</target>
+<categoryname>interface file</categoryname>
+<description>bumps to login, backup for takeonline</description>
+</file>
+<file>
 <source>loncom/html/favicon.ico</source>
 <target dist='default'>home/httpd/html/favicon.ico</target>
 <categoryname>interface file</categoryname>
@@ -3673,7 +4039,11 @@ logos and general widget icons
 <filenames>
 SMETE_white.gif;
 aboutlon.gif;
+aboutlon_pt.gif;
+aboutlon_de.gif;
 accessbutton.gif;
+accessbutton_pt.gif;
+accessbutton_de.gif;
 angry.gif;
 arrow_up.gif;
 bigsmile.gif;
@@ -3717,6 +4087,7 @@ jar_big.gif;
 jpg.gif;
 jpg_big.gif;
 latex.gif;
+library.gif;
 lipsrsealed.gif;
 lite.gif;
 liteani.gif;
@@ -3739,12 +4110,18 @@ mov_big.gif;
 move_up.gif;
 move_down.gif;
 navmap.correct.gif;
+navmap.ellipsis.gif;
 navmap.open.gif;
+navmap.page.open.gif;
+navmap.page.closed.gif;
+navmap.page.open.nomanip.gif;
+navmap.page.closed.nomanip.gif;
 navmap.wrong.gif;
 navmap.folder.open.gif;
 navmap.folder.closed.gif;
 navmap.folder.open.nomanip.gif;
 navmap.folder.closed.nomanip.gif;
+neutral.gif;
 page.gif;
 page_big.gif;
 pdf.gif;
@@ -3785,6 +4162,8 @@ upperright.gif;
 user.gif;
 user_big.gif;
 userauthentication.gif;
+userauthentication_pt.gif;
+userauthentication_de.gif;
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
@@ -3826,10 +4205,9 @@ subm_button.gif
 </filenames>
 </fileglob>
 <file>
-<source>loncom/xml/tth.pm</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/tth.pm</target>
+<source>modules/TexConvert/tthperl/tth.pm</source>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/tth.pm</target>
-<target dist='redhat8'>home/httpd/lib/perl/tth.pm</target>
+<target dist='default'>home/httpd/lib/perl/tth.pm</target>
 <categoryname>system file</categoryname>
 <description>
 perl module for invoking functions specific to TeX-to-HTML conversion
@@ -3854,7 +4232,7 @@ tested
 </file>
 <file>
   <source>loncom/LondConnection.pm</source>
-  <target dist='default'>home/httpd/perl/lib/LONCAPA/LondConnection.pm</target>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LondConnection.pm</target>
   <categoryname>system file</categoryname>
   <description>
      Manages a connection between a lonc proxy daemon and the lond server
@@ -3863,8 +4241,17 @@ tested
   <status>works/verified</status>
 </file>
 <file>
+  <source>loncom/LondTransaction.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LondTransaction.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+	Handles a single lon-capa insternal transaction
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
    <source>loncom/types/HashIterator.pm</source>
-   <target dist='default'>home/httpd/perl/lib/LONCAPA/HashIterator.pm</target>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/HashIterator.pm</target>
    <categoryname>system file</categoryname>
    <description>
       Provides support to iterate through opaque hashes hidden e.g. within 
@@ -3874,7 +4261,7 @@ tested
 </file>
 <file>
    <source>loncom/types/Queue.pm</source>
-   <target dist='default'>home/httpd/perl/lib/LONCAPA/Queue.pm</target>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/Queue.pm</target>
    <categoryname>system file</categoryname>
    <description>
      Provides a FIFO queue class.
@@ -3883,22 +4270,21 @@ tested
 </file>
 <file>
    <source>loncom/types/Stack.pm</source>
-   <target dist='default'>home/httpd/perl/lib/LONCAPA/Stack.pm</target>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/Stack.pm</target>
    <categoryname>system file</categoryname>
    <description>
      Provides a LIFO stack class.
    </description>
    <status>works/verified</status>
+</file>
 <file>
    <source>loncom/loncnew</source>
-   <target dist='default>home/httpd/perl/loncnew</target>
-   <categoryname>script </categoryname>
+   <target dist='default'>home/httpd/perl/loncnew</target>
+   <categoryname>script</categoryname>
    <description>
 	  Proxy server for remote loncapa requests.
+          Needs CPAN Event module.
    </description>
-   <dependencies>
-     CPAN Event module.
-   </dependencies>
 </file>
 <file>
 <source>loncom/configuration/Configuration.pm</source>
@@ -3913,9 +4299,8 @@ entries.
 </file>
 <file>
 <source>modules/TexConvert/tthperl/tth.so</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/tth.so</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/tth.so</target>
-<target dist='redhat8'>home/httpd/lib/perl/tth.so</target>
+<target dist='default'>home/httpd/lib/perl/tth.so</target>
 <categoryname>system file</categoryname>
 <description>
 shared library file for dynamic loading and unloading
@@ -3930,16 +4315,15 @@ related to this file during the build pr
 modules/TexConvert/tthperl/commands
 </build>
 <status>works/unverified</status>
-<dependencies>
+<privatedependencies>
 ../tthdynamic/tthfunc.c;
 ../ttmdynamic/ttmfunc.c
-</dependencies>
+</privatedependencies>
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.pm</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.pm</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.pm</target>
-<target dist='redhat8'>home/httpd/lib/perl/capa.pm</target>
+<target dist='default'>home/httpd/lib/perl/capa.pm</target>
 <categoryname>system file</categoryname>
 <description>
 perl module for invoking functions specific to CAPA
@@ -3953,9 +4337,8 @@ the build process however.
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.bs</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.bs</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.bs</target>
-<target dist='redhat8'>home/httpd/lib/perl/capa.bs</target>
+<target dist='default'>home/httpd/lib/perl/capa.bs</target>
 <categoryname>system file</categoryname>
 <description>
 bootstrap file associated with dynamic loading of this module on multiple
@@ -3970,9 +4353,8 @@ the build process however.
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.so</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.so</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.so</target>
-<target dist='redhat8'>home/httpd/lib/perl/capa.so</target>
+<target dist='default'>home/httpd/lib/perl/capa.so</target>
 <categoryname>system file</categoryname>
 <description>
 shared library file for dynamic loading and unloading
@@ -4163,9 +4545,22 @@ sunysb.gif;
 udel.gif;
 uz.gif;
 fvl.gif;
+csm.gif;
+fit.gif;
+nau.gif;
+nagoya.gif;
+huji.gif;
+ifusp.gif;
+ucsc.gif;
+waverly.gif;
+cmich.gif;
+UNICAMP.gif;
 glps.gif;
+BCHS.gif;
 headersfu.gif;
-uwsp.gif
+uwsp.gif;
+bsu.gif;
+wmston.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -4178,8 +4573,19 @@ uwsp.gif
 annarbor.tab;
 default.tab;
 msu.tab;
+csm.tab;
+fit.tab;
+huji.tab;
+nau.tab;
+nagoya.tab;
+cmich.tab;
+ifusp.tab;
+ucsc.tab;
+UNICAMP.tab;
+fsu.tab;
 sfu.tab;
-worf.tab
+wmston.tab;
+worf.tab;
 </filenames>
 </fileglob>
 <fileglob>
@@ -4225,6 +4631,12 @@ w.gif;
 x.gif;
 y.gif;
 z.gif;
+ö.gif;
+ä.gif;
+ü.gif;
+ä.gif;
+ö.gif;
+ü.gif;
 colon.gif;
 hyphen.gif;
 slash.gif;
@@ -4233,6 +4645,45 @@ space.gif;
 </fileglob>
 <fileglob>
 <glob>*.gif</glob>
+<sourcedir>loncom/html/res/adm/pages/pt/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/pt/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>icons used for the Portuguese LON-CAPA user interface</description>
+<filenames>
+anno_pt.gif;
+anot_pt.gif;
+bchat_pt.gif;
+catalog_pt.gif;
+ccrs_pt.gif;
+chrt_pt.gif;
+com_pt.gif;
+courses_pt.gif;
+cprv_pt.gif;
+cstr_pt.gif;
+docs_pt.gif;
+egrd_pt.gif;
+enrl_pt.gif;
+eval_pt.gif;
+fdbk_pt.gif;
+grds_pt.gif;
+keys_pt.gif;
+logout_pt.gif;
+nav_pt.gif;
+parm_pt.gif;
+pref_pt.gif;
+prt_pt.gif;
+res_pt.gif;
+roles_pt.gif;
+sbkm_pt.gif;
+spacer_pt.gif;
+sprs_pt.gif;
+src_pt.gif;
+stat_pt.gif;
+vbkm_pt.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
 <categoryname>graphic file</categoryname>
@@ -4272,6 +4723,7 @@ ledoff.gif;
 ledon.gif;
 ledsend.gif;
 logout.gif;
+mcrs.gif;
 mrk.gif;
 nav.gif;
 next.gif;
@@ -4472,6 +4924,22 @@ blank.html;
 closechildren.html
 </filenames>
 </fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/res/adm/pages/reactionresponse/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Associated file for answering reactionresponse style questions
+</description>
+<filenames>
+reaction_editor.html;
+reaction_frame.html;
+reaction_help.html;
+reaction_viewer.html;
+reaction_window.html
+</filenames>
+</fileglob>
 <file>
 <source>loncom/html/res/adm/pages/bookmarkmenu/bookmarklib.js</source>
 <target dist='default'>
@@ -4609,5 +5077,54 @@ configuration file to make LON-CAPA serv
 Appleshares access (Macintosh)
 </description>
 </file>
+<file>
+  <source>loncom/interface/lonmodifycourse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmodifycourse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface to modifying a course's internal ENV values for automated
+    enrollement
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpopulate.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpopulate.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for configuring automated enrollment
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/Enrollment.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/Enrollment.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for automated enrollment
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/localenroll.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localenroll.pm</target>
+  <categoryname>conf</categoryname>
+  <description>
+    Local handler for automated enrollment.
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/localenroll.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localenroll-std.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Local handler for automated enrollment, standard version.
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/Autoenroll.pl</source>
+  <target dist='default'>home/httpd/perl/Autoenroll.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Local handler for automated enrollment, standard version.
+  </description>
+</file>
 </files>
 </lpml>