--- doc/loncapafiles/loncapafiles.lpml	2002/08/14 23:04:34	1.164
+++ doc/loncapafiles/loncapafiles.lpml	2004/03/16 16:36:53	1.341
@@ -1,9 +1,8 @@
 <!DOCTYPE lpml PUBLIC "-//TUX/DTD lpml 1.0 Final//EN"
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
-<!-- Scott Harrison -->
 
-<!-- $Id: loncapafiles.lpml,v 1.164 2002/08/14 23:04:34 harris41 Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.341 2004/03/16 16:36:53 www Exp $ -->
 
 <!--
 
@@ -100,6 +99,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0444</chmod><chown dist='default'>root:root</chown>
   <abbreviation>static</abbreviation>
 </category>
+<category name="www static conf" type="runtime">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>static</abbreviation>
+</category>
+<category name="www static conf" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>static</abbreviation>
+</category>
 <category name="conf" type="runtime">
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>configurable</abbreviation>
@@ -140,6 +147,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>systemfile</abbreviation>
 </category>
+<category name="system script" type="runtime">
+  <chmod dist='default'>0755</chmod><chown dist='default'>root:root</chown>
+  <abbreviation>systemscript</abbreviation>
+</category>
+<category name="system script" type="development">
+  <chmod dist='default'>0755</chmod><chown dist='default'>root:root</chown>
+  <abbreviation>systemscript</abbreviation>
+</category>
 <category name="root script" type="runtime">
   <chmod dist='default'>0700</chmod><chown dist='default'>root:root</chown>
   <abbreviation>rootscript</abbreviation>
@@ -221,102 +236,114 @@ echo '**********************************
 </rpm>
 <directories>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for configuration files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/cron.d</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for running time-based "jobs"
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf</targetdir>
   <categoryname>standard</categoryname>
   <description>web configuration files</description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>etc/ntp</targetdir>
-  <categoryname>standard</categoryname>
-  <description>configuration directory for network time protocol</description>
-</directory>
-<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/pam.d</targetdir>
   <categoryname>standard</categoryname>
   <description>configuration directory for password authentication mechanism
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
   <targetdir dist='debian'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
   <targetdir dist='debian'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
   <targetdir dist='debian'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
   <targetdir dist='debian'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
   <targetdir dist='debian'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
   <targetdir dist='debian'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
   <targetdir dist='debian'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
   <targetdir dist='debian'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lonTabs</targetdir>
   <categoryname>standard</categoryname>
   <description>tab-formatted reference files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd</targetdir>
   <categoryname>standard</categoryname>
   <description>start of the web server tree</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl</targetdir>
   <categoryname>server readonly</categoryname>
   <description>perl scripts for managing the LON-CAPA system</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl/logs</targetdir>
   <categoryname>server standard</categoryname>
   <description>location where system performance and error logs are kept
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/lon-status/londchld</targetdir>
   <categoryname>server standard</categoryname>
   <description>
@@ -325,122 +352,200 @@ Used by lond parent to check if children
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl/tmp</targetdir>
   <categoryname>server standard</categoryname>
   <description>location where temporary files (for caching) are stored
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/prtspool</targetdir>
   <categoryname>server standard</categoryname>
   <description>for the output of lonprintout.pm
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA software modules and
 extensions</description>
 </directory>
 <directory dist='default'>
+  <!-- Must protect localauth.pm/localenroll.pm from extinction. -->
+  <protectionlevel>weak_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA non web mod-perl handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/Apache</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA web mod-perl handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lib/perl/Apache/localize</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>location of LON-CAPA MakeText translation files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/HTML</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of HTML specific perl module fixes and additions
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/LONCAPA</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of HTML specific perl module fixes and additions
   </description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>home/httpd/lonIDs</targetdir>
+   <protectionlevel>modest_delete</protectionlevel>
+ <targetdir dist='default'>home/httpd/lonIDs</targetdir>
   <categoryname>server standard</categoryname>
   <description>cookie jar</description>
 </directory>
 <directory dist='default'>
+   <protectionlevel>modest_delete</protectionlevel>
+ <targetdir dist='default'>home/httpd/scantron</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>uploaded scantron forms directory</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/sockets</targetdir>
   <categoryname>server standard</categoryname>
   <description>lonc's sockets</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/sockets/delayed</targetdir>
   <categoryname>server standard</categoryname>
   <description>lonc's sockets (delayed)</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/cgi-bin</targetdir>
   <categoryname>standard</categoryname>
   <description>location of cgi scripts</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html</targetdir>
   <categoryname>server standard</categoryname>
   <description>location of web-accessible file tree</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res</targetdir>
   <categoryname>server standard</categoryname>
   <description>root of resource tree</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/userfiles</targetdir>
   <categoryname>server standard</categoryname>
   <description>root for user uploaded files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm</targetdir>
   <categoryname>server readonly</categoryname>
   <description>unauthenticated resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Web directory for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/images</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Images for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/lang</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Language files for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/popups</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Popup windows for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/rat</targetdir>
   <categoryname>server readonly</categoryname>
   <description>home of the rat</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jme</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JME support files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/helper</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>XML specifications for helpers</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/gif</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation gif files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/eps</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation eps files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/tex</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation tex files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/tex/ru</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Russian online help documentation tex files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/png</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation png files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/lib/perl</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation for the LON-CAPA programming
 interface</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/lib/perl/Apache
   </targetdir>
   <categoryname>server readonly</categoryname>
@@ -448,27 +553,32 @@ interface</description>
 interface, Apache (mod_perl) handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/scripts</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation for the LON-CAPA programming
 interface, Apache (mod_perl) handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonIcons</targetdir>
   <categoryname>server readonly</categoryname>
   <description>graphic widgets</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonMisc</targetdir>
   <categoryname>server readonly</categoryname>
   <description>miscellaneous resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonKaputt</targetdir>
   <categoryname>server readonly</categoryname>
   <description>error warnings and icons</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lonUsers</targetdir>
   <categoryname>server standard</categoryname>
   <description>Home directories of local users.  There is a five-tier
@@ -484,96 +594,157 @@ roles.db) which specify the roles and pr
 LON-CAPA system.</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/MathML</targetdir>
   <categoryname>server readonly</categoryname>
   <description>mathematics markup language resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/lib/templates</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Resource library
+  </description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/includes</targetdir>
   <categoryname>server readonly</categoryname>
   <description>files useful for including within customized scripting
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/includes/templates
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description>template files useful for customized scripts</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/lon-status</targetdir>
   <categoryname>server standard</categoryname>
   <description>status reports; online logs are kept that
 are viewable over the world-wide web</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages</targetdir>
   <categoryname>server readonly</categoryname>
   <description>web user interface resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/adm/pages/pt</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>web user interface resources - Portuguese</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>web user interface resources</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonLCDfont</targetdir>
   <categoryname>server readonly</categoryname>
   <description>LCD font for remote control</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/lonDomLogos</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Logos for LON-CAPA domains</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lonTabs/lonDomColors</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Designs for LON-CAPA domains</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/lonInterFace</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Page headers and graphical interface files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/bookmarkmenu
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description>bookmark user interface code</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/annotations
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description></description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/indexericons
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description>icons that help depict the file system (outdated)</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
+  <targetdir dist='redhat8 redhat9'>usr/lib/perl5/site_perl/5.8.0</targetdir>
   <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>usr/local/loncapa/bin</targetdir>
   <categoryname>standard</categoryname>
   <description>local binary files for loncapa</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>usr/local/loncapa/doc</targetdir>
   <categoryname>standard</categoryname>
   <description>local documentation files for loncapa</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>usr/local/loncapa/doc/conf_examples</targetdir>
   <categoryname>standard</categoryname>
   <description>examples of configuration files for secondary
  services</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>usr/local/loncapa/sbin</targetdir>
+  <categoryname>standard</categoryname>
+  <description>local "auxiliary" binary files for loncapa</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/local/man/man1</targetdir>
   <categoryname>standard</categoryname>
   <description>local manual pages</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/man/man1</targetdir>
   <categoryname>standard</categoryname>
   <description>manual pages</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/man/man3</targetdir>
   <categoryname>standard</categoryname>
   <description>manual pages</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/sbin</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for superuser executables</description>
@@ -582,8 +753,8 @@ are viewable over the world-wide web</de
 <files>
 <file>
 <source>loncom/krb.conf</source>
-<target dist='default'>etc/krb.conf</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/krb.conf</target>
+<categoryname>static conf</categoryname>
 <description>
 which Kerberos server to contact for specified Kerberos domains
 </description>
@@ -672,7 +843,7 @@ the www@localhost MySQL password, and br
 This file provides initializations for perl handlers.  It adjusts what
 the module path space is (so as to include /home/httpd/lib/perl/Apache) as
 well as causing the Apache module to be used for every perl handler.
-<tt>startup.pl</tt> is invoked by <tt>access.conf</tt>.
+<tt>startup.pl</tt> is invoked by <tt>loncapa_apache.conf</tt>.
 </description>
 </file>
 <file>
@@ -682,7 +853,7 @@ well as causing the Apache module to be
 <description>
 Thesaurus database file to be built from loncom/thesaurus/rawkey.txt
 </description>
-<build trigger='run if dependencies change'>
+<build trigger='always run'>
 loncom/thesaurus/build_thesaurus_wrapper.sh
 </build>
 <dependencies>
@@ -714,8 +885,8 @@ Descriptive list of file extensions and
 </description>
 </file>
 <file>
-<source>loncom/cgi/barcode.gif</source>
-<target dist='default'>home/httpd/cgi-bin/barcode.gif</target>
+<source>loncom/cgi/barcode.png</source>
+<target dist='default'>home/httpd/cgi-bin/barcode.png</target>
 <categoryname>script</categoryname>
 <description>
 Dynamically outputs a barcode based on a CGI passed encode=BARCODEVALUE
@@ -723,6 +894,30 @@ parameter.
 </description>
 </file>
 <file>
+<source>loncom/cgi/decompress.pl</source>
+<target dist='default'>home/httpd/cgi-bin/decompress.pl</target>
+<categoryname>script</categoryname>
+<description>
+Decompresses an archive into its files inside of the construction space
+</description>
+</file>
+<file>
+<source>loncom/cgi/takeoffline.pl</source>
+<target dist='default'>home/httpd/cgi-bin/takeoffline.pl</target>
+<categoryname>script</categoryname>
+<description>
+Take machine offline
+</description>
+</file>
+<file>
+<source>loncom/cgi/takeonline.pl</source>
+<target dist='default'>home/httpd/cgi-bin/takeonline.pl</target>
+<categoryname>script</categoryname>
+<description>
+Take machine online
+</description>
+</file>
+<file>
 <source>loncom/cgi/thumbnail.gif</source>
 <target dist='default'>home/httpd/cgi-bin/thumbnail.gif</target>
 <categoryname>script</categoryname>
@@ -739,6 +934,14 @@ utility cgi script to view status of clu
 </description>
 </file>
 <file>
+<source>loncom/cgi/translator.pl</source>
+<target dist='default'>home/httpd/cgi-bin/translator.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to enter translations
+</description>
+</file>
+<file>
 <source>loncom/build/system_dependencies/perltest.pl</source>
 <target dist='default'>home/httpd/cgi-bin/perltest.pl</target>
 <categoryname>script</categoryname>
@@ -755,8 +958,16 @@ utility cgi script to view status of per
 </description>
 </file>
 <file>
-<source>loncom/cgi/graph.gif</source>
-<target dist='default'>home/httpd/cgi-bin/graph.gif</target>
+  <source>loncom/cgi/loncgi.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/loncgi.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a common interface to LON-CAPA cookies and environment.
+  </description>
+</file>
+<file>
+<source>loncom/cgi/graph.png</source>
+<target dist='default'>home/httpd/cgi-bin/graph.png</target>
 <categoryname>script</categoryname>
 <description>
 Dynamically outputs a graph especially for lonstatistics.pm.
@@ -791,6 +1002,14 @@ Dynamically outputs X-Y plots with point
 </description>
 </file>
 <file>
+<source>loncom/cgi/imagechoice.pl</source>
+<target dist='default'>home/httpd/cgi-bin/imagechoice.pl</target>
+<categoryname>script</categoryname>
+<description>
+Helper to select image coordinates in writing homework involving images.
+</description>
+</file>
+<file>
 <source>loncom/interface/printout.pl</source>
 <target dist='default'>home/httpd/cgi-bin/printout.pl</target>
 <categoryname>script</categoryname>
@@ -821,6 +1040,173 @@ coil,loop,field,magnetic
 and simply prints this text-only (no markup) to the browser
 </description>
 </file>
+<file>
+<source>loncom/cgi/metadata_harvest.pl</source>
+<target dist='default'>home/httpd/cgi-bin/metadata_harvest.pl</target>
+<categoryname>script</categoryname>
+<description>
+a cgi-script (not mod_perl), which contacts MySQL and pulls
+out all records in "|"-separated format.
+To be used by very simple harvesting engines.
+</description>
+</file>
+<file>
+<source>loncom/homework/simpleproblem.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/simpleproblem.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for DOCS "Simple Problem"
+</description>
+</file>
+<file>
+<source>loncom/homework/simpleproblem.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/simpleproblem.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for DOCS "Simple Problem"
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/examupload.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/examupload.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for score upload
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/examupload.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/examupload.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for score upload
+</description>
+</file>
+<fileglob>
+<glob>*.js</glob>
+<sourcedir>loncom/html/htmlarea/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+dialog.js;
+htmlarea.js;
+popupdiv.js;
+popupwin.js;
+</filenames>
+</fileglob>
+<file>
+<source>loncom/html/htmlarea/htmlarea.css</source>
+<target dist='default'>home/httpd/html/htmlarea/htmlarea.css</target>
+<categoryname>interface file</categoryname>
+<description>
+Stylesheet for HTMLArea
+</description>
+</file>
+<fileglob>
+<glob>*.js</glob>
+<sourcedir>loncom/html/htmlarea/lang/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/lang/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+b5.js;
+de.js;
+fi.js;
+it.js;
+nl.js;
+ro.js;
+vn.js;
+en.js;
+fr.js;
+ja-utf8.js;
+pl.js;
+ru.js;
+da.js;
+es.js;
+gb.js;
+nb.js;
+pt_br.js;
+se.js;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/htmlarea/popups/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/popups/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+about.html;
+insert_image.html;
+old_insert_image.html;
+blank.html;
+editor_help.html;
+insert_table.html;
+custom2.html;
+fullscreen.html;
+old-fullscreen.html;
+select_color.html;
+popup.js;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/htmlarea/images/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/images/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+ed_delete.gif;
+ed_link.gif;
+ed_about.gif;
+ed_format_bold.gif;
+ed_list_bullet.gif;
+ed_align_center.gif;
+ed_format_italic.gif;
+ed_list_num.gif;
+ed_align_justify.gif;
+ed_format_strike.gif;
+ed_paste.gif;
+ed_align_left.gif;
+ed_format_sub.gif;
+ed_redo.gif;
+ed_align_right.gif;
+ed_format_sup.gif;
+ed_show_border.gif;
+ed_blank.gif;
+ed_format_underline.gif;
+ed_splitcel.gif;
+ed_charmap.gif;
+ed_help.gif;
+ed_undo.gif;
+ed_color_bg.gif;
+ed_hr.gif;
+fullscreen_maximize.gif;
+ed_color_fg.gif;
+ed_html.gif;
+fullscreen_minimize.gif;
+ed_copy.gif;
+ed_image.gif;
+insert_table.gif;
+ed_custom.gif;
+ed_indent_less.gif;
+ed_cut.gif;
+ed_indent_more.gif;
+</filenames>
+</fileglob>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/homework/templates/</sourcedir>
@@ -835,12 +1221,21 @@ blank.library;
 blank.library.meta;
 blank.problem;
 blank.problem.meta;
+ClickImageExample.problem;
+ClickImageExample.problem.meta;
 Essay.problem;
 Essay.problem.meta;
+examupload.problem;
+examupload.problem.meta;
+man1.jpg;
+man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
-Plot.problem;
 Plot.problem.meta;
+Plot_curve.problem;
+Plot_curve.problem.meta;
+Plot_data.problem;
+Plot_data.problem.meta;
 RadioResponse.problem;
 RadioResponse.problem.meta;
 RandomLabelExample.problem;
@@ -857,12 +1252,19 @@ SelectFromOptions-8ConceptGoups.problem;
 SelectFromOptions-8ConceptGoups.problem.meta;
 SelectFromOptions-Simple.problem;
 SelectFromOptions-Simple.problem.meta;
+SimpleStringResponse.problem.meta;
 script.library;
 script.library.meta;
 SimpleFormula.problem;
 SimpleFormula.problem.meta;
 StringResponse.problem;
-StringResponse.problem.meta
+StringResponse.problem.meta;
+SimpleMatching.problem;
+SimpleMatching.problem.meta;
+SimpleRank.problem;
+SimpleRank.problem.meta;
+SimpleTrueFalse.problem;
+SimpleTrueFalse.problem.meta
 </filenames>
 </fileglob>
 <file>
@@ -886,8 +1288,8 @@ Built from Glabel.java.  Still working o
 </note>
 </file>
 <file>
-<source>loncom/interface/default.assesscalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.assesscalc
+<source>loncom/interface/spreadsheet/default_assesscalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_assesscalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -895,8 +1297,8 @@ Default spreadsheet for individual asses
 </description>
 </file>
 <file>
-<source>loncom/interface/default.studentcalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.studentcalc
+<source>loncom/interface/spreadsheet/default_studentcalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_studentcalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -904,8 +1306,8 @@ Default spreadsheet for assessment of st
 </description>
 </file>
 <file>
-<source>loncom/interface/default.classcalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.classcalc
+<source>loncom/interface/spreadsheet/default_classcalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_classcalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -930,15 +1332,23 @@ Descriptive list of abbreviations used i
 and privileges available in the network with function
 </description>
 </file>
-<file>
+<file type="private">
 <source>loncom/hosts.tab</source>
 <target dist='default'>home/httpd/lonTabs/hosts.tab</target>
-<categoryname>static conf</categoryname>
+<categoryname>www static conf</categoryname>
 <description>
 List of all machines in the LON-CAPA network.  Relates <tt>lonHostID</tt> to
 <tt>lonDefDomain</tt> and <u>IP address</u>.
 </description>
 </file>
+<file type="private">
+<source>loncom/domain.tab</source>
+<target dist='default'>home/httpd/lonTabs/domain.tab</target>
+<categoryname>www static conf</categoryname>
+<description>
+List of all domains in the LON-CAPA network. Lists the name name of the domain and any default authentication.
+</description>
+</file>
 <file>
 <source>loncom/spare.tab</source>
 <target dist='default'>home/httpd/lonTabs/spare.tab</target>
@@ -962,7 +1372,7 @@ in <tt>access.conf</tt>
 <file>
 <source>loncom/htpasswd</source>
 <target dist='default'>home/httpd/lonTabs/htpasswd</target>
-<categoryname>conf</categoryname>
+<categoryname>static conf</categoryname>
 <description>
 Basic auth password to access /lon-status and /server-status
 </description>
@@ -970,7 +1380,7 @@ Basic auth password to access /lon-statu
 <file>
 <source>loncom/smb.conf</source>
 <target dist='default'>usr/local/loncapa/doc/conf_examples/smb.conf</target>
-<categoryname>conf</categoryname>
+<categoryname>static conf</categoryname>
 <description>
 configuration file to make LON-CAPA server file space accessible to network
 neighborhood
@@ -978,8 +1388,8 @@ neighborhood
 </file>
 <file>
 <source>loncom/ntp.conf</source>
-<target dist='default'>etc/ntp.conf</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/ntp.conf</target>
+<categoryname>static conf</categoryname>
 <description>
 which NTP server to contact for information (XNTP3 standard)
 </description>
@@ -1011,6 +1421,32 @@ Batch script for removing temporary tabl
 </description>
 </file>
 <file>
+<source>loncom/misc/cleanup_prtspool.pl</source>
+<target dist='default'>home/httpd/perl/cleanup_prtspool.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for removing files not accessed within 24 hours from the 
+/home/httpd/prtspool directory.
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/seed_accesscount.pl</source>
+<target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for moving access count data from nohist_resevaldata.db to
+nohist_accesscount.db.
+</description>
+</file>
+<file>
+<source>loncom/lonhttpd</source>
+<target dist='default'>home/httpd/perl/lonhttpd</target>
+<categoryname>script</categoryname>
+<description>
+Small fry httpd on port 8080
+</description>
+</file>
+<file>
 <source>loncom/lonc</source>
 <target dist='default'>home/httpd/perl/lonc</target>
 <categoryname>script</categoryname>
@@ -1093,12 +1529,24 @@ echo 'pod2html lond'
 </dependencies>
 </file>
 <file>
+<source>loncom/build/CHECKRPMS</source>
+<target dist='default'>home/httpd/cgi-bin/CHECKRPMS</target>
+<categoryname>script</categoryname>
+<description>CGI script that checks status of RPMs</description>
+</file>
+<file>
 <source>loncom/cgi/loncron.pl</source>
 <target dist='default'>home/httpd/cgi-bin/loncron.pl</target>
 <categoryname>script</categoryname>
 <description>CGI script that starts and pipes output of loncron</description>
 </file>
 <file>
+<source>loncom/cgi/userstatus.pl</source>
+<target dist='default'>home/httpd/cgi-bin/userstatus.pl</target>
+<categoryname>script</categoryname>
+<description>CGI script that shows users currently on machine</description>
+</file>
+<file>
 <source>loncom/loncron</source>
 <target dist='default'>home/httpd/perl/loncron</target>
 <categoryname>script</categoryname>
@@ -1217,6 +1665,22 @@ GNU General Public License.  Long live t
 </description>
 </file>
 <file>
+<source>loncom/license/httpi.license</source>
+<target dist='default'>home/httpd/html/adm/httpi.license</target>
+<categoryname>interface file</categoryname>
+<description>
+HTTPi webserver license
+</description>
+</file>
+<file>
+<source>loncom/license/httpi.readme</source>
+<target dist='default'>home/httpd/html/adm/httpi.readme</target>
+<categoryname>interface file</categoryname>
+<description>
+HTTPi webserver readme 
+</description>
+</file>
+<file>
 <source>loncom/license/about.html</source>
 <target dist='default'>home/httpd/html/adm/about.html</target>
 <categoryname>interface file</categoryname>
@@ -1242,6 +1706,31 @@ Interface file for responding to imprope
 </description>
 </file>
 <file>
+<source>loncom/html/adm/notinit.html</source>
+<target dist='default'>home/httpd/html/adm/notinit.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Interface file for responding to accessing uploaded resources without
+re-initializing course.
+</description>
+</file>
+<file>
+<source>loncom/html/adm/overloaded.txt</source>
+<target dist='default'>home/httpd/html/adm/overloaded.txt</target>
+<categoryname>interface file</categoryname>
+<description>
+Interface file for responding to overload situations.
+</description>
+</file>
+<file>
+<source>loncom/html/adm/loginproblems.html</source>
+<target dist='default'>home/httpd/html/adm/loginproblems.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Help page for login problems.
+</description>
+</file>
+<file>
 <source>loncom/xml/physnet.sty</source>
 <target dist='default'>home/httpd/html/res/adm/includes/physnet.sty</target>
 <categoryname>static conf</categoryname>
@@ -1268,6 +1757,14 @@ content.
 </description>
 </file>
 <file>
+<source>loncom/homework/scantronformat.tab</source>
+<target dist='default'>home/httpd/lonTabs/scantronformat.tab</target>
+<categoryname>conf</categoryname>
+<description>
+Different configs for scantron input files.
+</description>
+</file>
+<file>
 <source>loncom/publisher/packages.tab</source>
 <target dist='default'>home/httpd/lonTabs/packages.tab</target>
 <categoryname>static conf</categoryname>
@@ -1349,6 +1846,69 @@ Handler to put up announcements and cale
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonsyllabus.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsyllabus.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up syllabus
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/homework/lonsimpleproblemedit.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsimpleproblemedit.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to set parameters for simple homework problems
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonsimplepage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsimplepage.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up simple page
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickstudent.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickstudent.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a student from classlist
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a courseid from a list of courses
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonbulletin.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonbulletin.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up bulletin board
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonaboutme.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonaboutme.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up personal info
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/loncfile.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncfile.pm</target>
 <categoryname>handler</categoryname>
@@ -1359,6 +1919,16 @@ construction space menu.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/publisher/testbankimport.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/testbankimport.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to convert plain text questions in a testbank file to LON-CAPA problems.
+Called by selecting testbank option when uploading file to construction space.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonhelp.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonhelp.pm</target>
 <categoryname>handler</categoryname>
@@ -1366,7 +1936,13 @@ construction space menu.
 The .tex file help handler.
 </description>
 <status>works/unverified</status>
-<build trigger='always run'>loncom/build/buildHelp.sh</build>
+<build trigger='always run'>
+loncom/html/adm/help/buildMakeWrapper
+</build>
+<dependencies>
+Makefile;
+buildMakeWrapper
+</dependencies>
 </file>
 <file>
 <source>loncom/html/adm/help/abouthelp.html</source>
@@ -1406,6 +1982,17 @@ manual online, with a somewhat clumsy in
 The postscript Author's Manual
 </description>
 <status>works/unverified</status>
+<dependencies>
+doc/help/author.manual.texxml;
+doc/help/latexSplitter.py;
+doc/help/rebuildLabelHash.pl;
+doc/help/render.texxml.pl;
+doc/help/simpleEdit.py;
+doc/help/texxml2indextex.pl;
+doc/help/texxml2latex.pl;
+loncom/build/buildHelp.sh;
+loncom/build/help_graphics_converter.pl
+</dependencies>
 </file>
 <file>
 <source>doc/help/author.manual.pdf</source>
@@ -1424,6 +2011,17 @@ The PDF Author's Manual
 The postscript Course Manual
 </description>
 <status>works/unverified</status>
+<dependencies>
+doc/help/course.manual.texxml;
+doc/help/latexSplitter.py;
+doc/help/rebuildLabelHash.pl;
+doc/help/render.texxml.pl;
+doc/help/simpleEdit.py;
+doc/help/texxml2indextex.pl;
+doc/help/texxml2latex.pl;
+loncom/build/buildHelp.sh;
+loncom/build/help_graphics_converter.pl
+</dependencies>
 </file>
 <file>
 <source>doc/help/course.manual.pdf</source>
@@ -1456,6 +2054,7 @@ dynamic_plot2.gif;
 formulaResponse.gif;
 login.gif;
 lonhelpheader.gif;
+mainCourseDocuments.gif;
 mapAdvancedEditorNew.gif;
 mapClickedStart.gif;
 mapEditFirstClick.gif;
@@ -1507,6 +2106,7 @@ dynamic_plot2.eps;
 formulaResponse.eps;
 lonhelpheader.eps;
 login.eps;
+mainCourseDocuments.eps;
 mapAdvancedEditorNew.eps;
 mapClickedStart.eps;
 mapEditFirstClick.eps;
@@ -1547,22 +2147,66 @@ Tex files for the help system
 </description>
 <filenames>
 About_Authors_Manual.tex;
+About_Bombs.tex;
+About_Communication.tex;
+About_Developers_Manual.tex;
 About_Numerical_and_Formula_Response.tex;
 Ambiguous_Reference.tex;
+Analyze_Problem.tex;
+Analysis_Analyze_Over.tex;
+Analysis_Analyze_as.tex;
+Analysis_num_plots.tex;
+Annotation.tex;
+Authentication.tex;
 Author_LON-CAPA_Introduction.tex;
 Author_Manual_Title_Page.tex;
 Author_Numerical_and_Formula.tex;
 Author_Remote_Control.tex;
 Authoring_Adding_Pictures.tex;
+Authoring_DataResponse.tex;
 Authoring_Dynamic_Plot.tex;
+Authoring_ExternalResponse.tex;
+Authoring_Foil_Structure_Tags.tex;
 Authoring_HTML_vs_Tex.tex;
+Authoring_Hint_Tags.tex;
+Authoring_ImageResponse.tex;
+Authoring_Input_Tags.tex;
+Authoring_Internal_Tags.tex;
 Authoring_M_Tag.tex;
+Authoring_NumericalResponse.tex;
+Authoring_OptionResponse.tex;
+Authoring_Output_Tags.tex;
+Authoring_Pictures_EPS.tex;
 Authoring_Piecewise_Plot.tex;
+Authoring_RadiobuttonResponse.tex;
+Authoring_Response_Attributes.tex;
+Authoring_Response_Tag_Intro.tex;
+Authoring_Responseparam_Parameter.tex;
+Authoring_Scripting_Tags.tex;
+Authoring_Structure_Tags.tex;
+Authoring_XML_Intro.tex;
+Bookmarks.tex;
+Bugzilla.tex;
+CAPA_LON-CAPA_function_diffs.tex;
+Caching.tex;
+Calendar_Add_Announcement.tex;
+Calendar_Remove_Announcement.tex;
 Calling_Functions.tex;
+Cascading_Parameters.tex;
+Change_Colors.tex;
+Change_Password.tex;
+Chart_Description.tex;
+Chart_Output_Data.tex;
+Chart_Output_Formats.tex;
+Chatting.tex;
 Coauthor.tex;
 Construction_Space_Overview.tex;
+Course_Add_Other.tex;
 Course_Add_Student.tex;
+Course_Broadcast_Message.tex;
+Course_Change_Privileges.tex;
 Course_Chart_To_Excel.tex;
+Course_Chat.tex;
 Course_Convert_To_CSV.tex;
 Course_Create_Class_List.tex;
 Course_Critical_Message.tex;
@@ -1571,29 +2215,79 @@ Course_Disable_Discussion.tex;
 Course_Discussion_Board.tex;
 Course_Drop_Student.tex;
 Course_Edit_Content.tex;
+Course_Editing_Custom_Roles.tex;
+Course_Extending_Due_Dates.tex;
+Course_Face_To_Face_Records.tex;
 Course_Feedback_Addresses.tex;
 Course_Homework_Performance_Overview.tex;
+Course_Manual_Title_Page.tex;
+Course_Manually_Grade_Problem.tex;
+Course_Maximum_Collaborators.tex;
 Course_Message_Access.tex;
+Course_Modify_Student_Data.tex;
+Course_Parameter_Levels.tex;
 Course_Problem_Weight.tex;
+Course_Set_Start_End_Date.tex;
 Course_Setting_Parameters.tex;
 Course_Student_Grade_Override.tex;
 Course_Student_Work.tex;
 Course_Toplevel_Seq.tex;
+Course_User_Evaluation.tex;
+Course_User_Parameter.tex;
+Course_View_Class_List.tex;
+Create_Course.tex;
 Creating_A_Course_Intro.tex;
 Creating_New_Content_Pages.tex;
 Creating_Online_Problems.tex;
 Creating_Radio_Response_Problems.tex;
+Developer_Manual_Title_Page.tex;
+Developer_Tutorial.tex;
+Docs_About_Bulletin_Board.tex;
+Docs_About_My_Personal_Info.tex;
+Docs_About_Simple_Page.tex;
+Docs_About_Syllabus.tex;
+Docs_Adding_Course_Doc.tex;
+Docs_Adding_External_Resource.tex;
+Docs_Adding_Folders.tex;
+Docs_Adding_Syllabus.tex;
+Docs_Alternatives.tex;
+Docs_Creating_From_Template.tex;
+Docs_Editing_Templated_Pages.tex;
+Docs_Importing_LON-CAPA_Resource.tex;
+Docs_Load_Map.tex;
+Docs_Main_Course_Documents.tex;
+Docs_Navigate_Content.tex;
+Docs_Overview.tex;
+Docs_Score_Upload_Form.tex;
+Docs_Supplemental.tex;
+Docs_Uploading_From_Harddrive.tex;
+Finding_Resources.tex;
 Foils.tex;
+Formula_Response_Adv_Intro.tex;
 Formula_Response_Example.tex;
 Formula_Response_Limitations.tex;
 Formula_Response_Problems.tex;
 Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
+General_Intro.tex;
+Generation.tex;
+GradingOptions.tex;
+Greek_Symbols.tex;
+Guts_Apache.tex;
+Guts_Apache_Env.tex;
+Guts_Apache_Modules.tex;
+Guts_Authentication.tex;
+Guts_Authoring.tex;
+Guts_Coding_Guidelines.tex;
+Guts_Course_Dir.tex;
+Guts_User_Dir.tex;
 How_To_Edit_Existing_Content_Pages.tex;
 Latex_Footer.tex;
 Latex_Header.tex;
+Leaving_Feedback.tex;
 Login_To_LON-CAPA.tex;
 Metadata_Description.tex;
+Navmap_Host_Down.tex;
 Numerical_Response_Advanced_Example.tex;
 Numerical_Response_Format.tex;
 Numerical_Response_Intro.tex;
@@ -1612,19 +2306,35 @@ Option_Response_Problem_Figure.tex;
 Option_Response_Problem_Parts.tex;
 Option_Response_Problems.tex;
 Option_Response_Simple.tex;
+Other_Symbols.tex;
+Part_Tag_Edit_Help.tex;
+Personal_Info_Page.tex;
+Physical_Units.tex;
+Prefs_Forwarding.tex;
+Prefs_Screen_Name_Nickname.tex;
+Print_Resource.tex;
 Problem_Editor_Testing_Area.tex;
 Problem_Editor_XML_Index.tex;
+Problem_LON-CAPA_Functions.tex;
 Problem_Types.tex;
 Publishing_A_Resource.tex;
 Publishing_Author_Tutorial_Segue.tex;
 Publishing_Copyright.tex;
 Publishing_Intro.tex;
 Publishing_Keywords.tex;
+Quick_Grades_Possibly_Correct.tex;
 Radio_Response_Problems.tex;
 Radio_Response_Randomization.tex;
+Ranking_Problems.tex;
+Receipt.tex;
+Resource_Discussion.tex;
 Resource_Types.tex;
+Roles_About.tex;
+Script_Functions.tex;
 Script_Tutorial_Intro.tex;
+Script_Variables.tex;
 Scripting_Help.tex;
+Sending_Email.tex;
 Sequence_Advanced_Editor_Creation.tex;
 Sequence_Definition.tex;
 Sequence_Editor_Selection.tex;
@@ -1633,36 +2343,68 @@ Sequence_Simple_Editor_Creation.tex;
 Sequence_Top-Level.tex;
 Significant_Figures.tex;
 Spreadsheet_About.tex;
-Spreadsheet_Alternative_View.tex;
-Spreadsheet_Changes_To_Grading.tex;
-Spreadsheet_Col_Sum.tex;
-Spreadsheet_Completely_Recalc.tex;
-Spreadsheet_Empty_Rows.tex;
+Spreadsheet_Calculation.tex;
+Spreadsheet_Calculation_Time.tex;
+Spreadsheet_Cell_Editing.tex;
+Spreadsheet_Editing.tex;
 Spreadsheet_Export_Row.tex;
+Spreadsheet_Files.tex;
 Spreadsheet_Functions.tex;
-Spreadsheet_Import_Values.tex;
+Spreadsheet_Hierarchy.tex;
+Spreadsheet_HowTo_Assessments.tex;
+Spreadsheet_HowTo.tex;
+Spreadsheet_Layout.tex;
 Spreadsheet_Levels.tex;
-Spreadsheet_Lists.tex;
 Spreadsheet_Max_Depth_Exceeded.tex;
-Spreadsheet_OOO_Rows.tex;
-Spreadsheet_Op_On_All_Problem_Parts.tex;
 Spreadsheet_Parms.tex;
 Spreadsheet_Problem_Weight.tex;
-Spreadsheet_Ranges.tex;
-Spreadsheet_Specifying_Cells.tex;
+Spreadsheet_Referencing_Cells.tex;
+Spreadsheet_Referencing_Parameters.tex;
+Spreadsheet_Row_Numbers.tex;
+Spreadsheet_Student_View.tex;
 Spreadsheet_Student_Visible.tex;
-Spreadsheet_Symbolic_Names.tex;
 Spreadsheet_Template_Row.tex;
 Spreadsheet_Ternary_Operator.tex;
 Spreadsheet_Tries.tex;
+Statistics_Overall_Key.tex;
 String_Response_Problem_Creation.tex;
 String_Response_Problems.tex;
+Syllabus_ExtLink.tex;
+Syllabus_URLs.tex;
 Tolerance.tex;
+Uploaded_Templates_PublicView.tex;
+Uploaded_Templates_TextBoxes.tex;
 Variable_Naming_Conventions.tex;
 Variable_Tutorial_A.tex;
 Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
-Variables_in_the_Text_Block.tex
+Variables_in_the_Text_Block.tex;
+What_Is_LON-CAPA.tex;
+Why_LON-CAPA.tex;
+all_functions_table.tex;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/tex/ru/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/tex/ru/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Russian Tex files for the help system
+</description>
+<filenames>
+About_Authors_Manual.tex;
+About_Communication.tex;
+About_Developers_Manual.tex;
+About_Numerical_and_Formula_Response.tex;
+CAPA_LON-CAPA_function_diffs.tex;
+Course_Set_Start_End_Date.tex;
+Creating_A_Course_Intro.tex;
+Other_Symbols.tex;
+Physical_Units.tex;
+Print_Resource.tex;
+Authoring_Adding_Pictures.tex;
 </filenames>
 </fileglob>
 <file>
@@ -1684,6 +2426,15 @@ Handler to show statistics on solving LO
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/statistics/lonstathelpers.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstathelpers.pm</target>
+<categoryname>module</categoryname>
+<description>
+Utility module for statistics and data mining.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/statistics/lonproblemstatistics.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonproblemstatistics.pm
 </target>
@@ -1691,6 +2442,34 @@ Handler to show statistics on solving LO
 <description>
 The module that generate the html for the Problem Statistics web pages.
 </description>
+</file>
+<file>
+<source>loncom/interface/statistics/lonstudentsubmissions.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstudentsubmissions.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+Generates excel file containing student submissions and correct answers.
+</description>
+</file>
+<file>
+<source>loncom/interface/statistics/loncorrectproblemplot.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncorrectproblemplot.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the correct problems plot web pages.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonpercentage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpercentage.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the Percentage graph web pages.
+</description>
 <status>works/unverified</status>
 </file>
 <file>
@@ -1699,7 +2478,17 @@ The module that generate the html for th
 </target>
 <categoryname>handler</categoryname>
 <description>
-The module that generate the html for the Problem Analysis web pages.
+This module provides detailed analysis and raw data for submissions of various problem types.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonsubmissiontimeanalysis.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsubmissiontimeanalysis.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+This module produces plots of the times of students attempts on an assessment.
 </description>
 <status>works/unverified</status>
 </file>
@@ -1723,6 +2512,15 @@ Handler to show difference between two f
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/publisher/lonrights.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrights.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to show and edit custom distribution rights
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/lonupload.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonupload.pm</target>
 <categoryname>handler</categoryname>
@@ -1798,6 +2596,14 @@ Handler to publish directories.
 </description>
 </file>
 <file>
+<source>loncom/publisher/lonunauthorized.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonunauthorized.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to explain failed contruction space access.
+</description>
+</file>
+<file>
 <source>doc/man/Apache__lonpubdir.3</source>
 <target dist='default'>usr/man/man3/Apache::lonpubdir.3</target>
 <categoryname>doc</categoryname>
@@ -1968,6 +2774,43 @@ Contains a set of functions that generat
 </description>
 </file>
 <file>
+<source>loncom/localize/lonlocal.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonlocal.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains the &mt access function to Locale::Maketext
+</description>
+</file>
+<file>
+<source>loncom/localize/localize.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/localize.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Localization class for Locale::Maketext
+</description>
+</file>
+<fileglob>
+<glob>*.pm</glob>
+<sourcedir>loncom/localize/localize/</sourcedir>
+<targetdir dist='default'>
+home/httpd/lib/perl/Apache/localize/</targetdir>
+<categoryname>static conf</categoryname>
+<description>
+Translation files.
+</description>
+<filenames>
+de.pm;
+pt.pm;
+fr.pm;
+ja.pm;
+tr.pm;
+ru.pm;
+fa.pm;
+ar.pm;
+es.pm;
+</filenames>
+</fileglob>
+<file>
 <source>loncom/interface/loncoursedata.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncoursedata.pm</target>
 <categoryname>handler</categoryname>
@@ -2047,6 +2890,43 @@ assignment.
 </description>
 <status>works/unverified</status>
 </file>
+
+<file>
+  <source>loncom/homework/chemresponse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/chemresponse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handle the tags organicresponse/structure and reationresponse
+  </description>
+  <status>works/unverified</status>
+</file>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jme/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jme/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JME files, for editing organic structures
+  </description>
+  <filenames>
+JME.jar;
+jme.gif;
+jme_help.html;
+nitro.gif;
+smiles.gif
+  </filenames>
+</fileglob>
+
+<file>
+  <source>loncom/homework/convertjme.pl</source>
+  <target dist='default'>home/httpd/cgi-bin/convertjme.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Dynamically converts JME strings into either a png or ps file.
+  </description>
+</file>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -2125,6 +3005,73 @@ Handles navigational maps.
 <status>works/unverified</status>
 </file>
 <file>
+<source>doc/man/Apache__lonnavmaps.3</source>
+<target dist='default'>usr/man/man3/Apache::lonnavmaps.3</target>
+<categoryname>doc</categoryname>
+<description>man page for lonnavmaps.pm</description>
+<build trigger='always run'>
+loncom/build/pod2man.sh ../../loncom/interface/lonnavmaps.pm &gt; \
+../../doc/man/Apache__lonnavmaps.3 &amp;&amp; echo 'manifying lonnavmaps.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/interface/lonnavmaps.pm
+</dependencies>
+</file>
+<file>
+<source>doc/lib/perl/Apache/lonnavmaps.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonnavmaps.html
+</target>
+<categoryname>doc</categoryname>
+<description>POD-derived page for lonnavmaps.pm</description>
+<build trigger='always run'>
+loncom/build/pod2html.sh ../../loncom/interface/lonnavmaps.pm &gt; \
+../../doc/lib/perl/Apache/lonnavmaps.html &amp;&amp; \
+echo 'pod2html lonnavmaps.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/interface/lonnavmaps.pm
+</dependencies>
+</file>
+<file>
+<source>loncom/interface/lonhelper.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhelper.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Helper framework.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/helper/parameter.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/parameter.helper</target>
+<categoryname>handler</categoryname>
+<description>
+Parameter setting helper.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/helper/course.initialization.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/course.initialization.helper</target>
+<categoryname>handler</categoryname>
+<description>
+Course initialization helper.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonquickgrades.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonquickgrades.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Student quick grades interface.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonpreferences.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpreferences.pm</target>
 <categoryname>handler</categoryname>
@@ -2144,6 +3091,14 @@ Handles the production of printable file
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/metadata_database/LONCAPA/lonmetadata.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonmetadata.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a common interface to LON-CAPA metadata.
+  </description>
+</file>
+<file>
 <source>loncom/interface/lonsearchcat.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsearchcat.pm</target>
 <categoryname>handler</categoryname>
@@ -2193,6 +3148,15 @@ echo 'pod2html lonsearchcat.pm'
 </dependencies>
 </file>
 <file>
+<source>loncom/interface/lonmanagekeys.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonmanagekeys.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows users with "mky" privileges to generate and manage course access keys.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/londropadd.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londropadd.pm</target>
 <categoryname>handler</categoryname>
@@ -2229,13 +3193,49 @@ problems and assignments.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonspreadsheet.pm</source>
+<source>loncom/interface/spreadsheet/lonspreadsheet.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonspreadsheet.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Spreadsheets are completely web-based.
-They exist on the level of a whole course, a student, and individual
-assessments.
+The top level interface for the display and editing of spreadsheets.  There
+are three levels of spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/Spreadsheet.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/Spreadsheet.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the parent object of each spreadsheet type (classcalc, studentcalc,
+assesscalc).
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/classcalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/classcalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the course level spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/studentcalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/studentcalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the student level spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/assesscalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/assesscalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the assessment level spreadsheet.
 </description>
 <status>works/unverified</status>
 </file>
@@ -2338,6 +3338,15 @@ Has routines which control the remote co
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonremote.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonremote.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to lauch and collapse the remote control.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>rat/lonpageflip.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpageflip.pm</target>
 <categoryname>handler</categoryname>
@@ -2553,6 +3562,55 @@ implements &lt;script&gt;, &lt;scriptlib
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/languagetags.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/languagetags.pm</target>
+<categoryname>handler</categoryname>
+<description>
+implements &lt;mt&gt;
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/homework/randomlylabel.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/randomlylabel.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for compositing images, and text together.
+</description>
+</file>
+<file>
+<source>loncom/homework/drawimage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/drawimage.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for programtically defining an image
+</description>
+</file>
+<file>
+<source>loncom/homework/imagechoice.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imagechoice.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for picking out locations on an image.
+</description>
+</file>
+<file>
+<source>loncom/homework/rankresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/rankresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for rankresponse
+</description>
+</file>
+<file>
+<source>loncom/homework/matchresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/matchresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for matchresponse
+</description>
+</file>
+<file>
 <source>loncom/homework/randomlabel.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/randomlabel.pm</target>
 <categoryname>handler</categoryname>
@@ -2620,13 +3678,24 @@ a way that does not threaten the operati
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/auth/localauth.pm</source>
-<target dist='default'>home/httpd/lib/perl/localauth.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Local authentication mechanism (meant to be customized).
-</description>
-<status>works/unverified</status>
+  <source>loncom/auth/localauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localauth-std.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Local authentication mechanism.  The target file is meant as a template
+for a localauth.pm file.  The target file with the -std suffix is not
+used directly by any software program; it is just a template file.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/localauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localauth.pm</target>
+  <categoryname>conf</categoryname>
+  <description>
+Local authentication mechanism.  
+  </description>
+  <status>works/unverified</status>
 </file>
 <file>
 <source>loncom/auth/lonacc.pm</source>
@@ -2954,6 +4023,18 @@ loncom/build/pod2html.sh ../lonnet/perl/
 <categoryname>interface file</categoryname>
 <description>bumps to login</description>
 </file>
+<file>
+<source>loncom/html/index.html</source>
+<target dist='default'>home/httpd/html/origindex.html</target>
+<categoryname>interface file</categoryname>
+<description>bumps to login, backup for takeonline</description>
+</file>
+<file>
+<source>loncom/html/favicon.ico</source>
+<target dist='default'>home/httpd/html/favicon.ico</target>
+<categoryname>interface file</categoryname>
+<description>Bookmark and tab icon</description>
+</file>
 <link>
 <linkto>etc/mime.types</linkto>
 <target dist='default'>etc/httpd/conf/mime.types</target>
@@ -3017,6 +4098,22 @@ javascript
 </description>
 </file>
 <file>
+<source>rat/client/extpickcode.html</source>
+<target dist='default'>home/httpd/html/adm/rat/extpickcode.html</target>
+<categoryname>interface file</categoryname>
+<description>
+javascript
+</description>
+</file>
+<file>
+<source>rat/client/extpickframe.html</source>
+<target dist='default'>home/httpd/html/adm/rat/extpickframe.html</target>
+<categoryname>interface file</categoryname>
+<description>
+javascript
+</description>
+</file>
+<file>
 <source>rat/client/map.html</source>
 <target dist='default'>home/httpd/html/adm/rat/map.html</target>
 <categoryname>interface file</categoryname>
@@ -3032,6 +4129,14 @@ bumper
 A blank page with very minimal HTML structural elements.
 </description>
 </file>
+<file>
+<source>rat/client/loading.html</source>
+<target dist='default'>home/httpd/html/adm/rat/loading.html</target>
+<categoryname>interface file</categoryname>
+<description>
+A blank page which calls drawwindow in its opener after being loaded.
+</description>
+</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>rat/images/</sourcedir>
@@ -3180,13 +4285,24 @@ logos and general widget icons
 <filenames>
 SMETE_white.gif;
 aboutlon.gif;
+aboutlon_pt.gif;
+aboutlon_de.gif;
 accessbutton.gif;
+accessbutton_pt.gif;
+accessbutton_de.gif;
+angry.gif;
 arrow_up.gif;
+bigsmile.gif;
+branch.gif;
 cab.gif;
 cab_big.gif;
 capapanel.gif;
+check.gif;
 class.gif;
 class_big.gif;
+coolindiff.gif;
+coolsmile.gif;
+cry.gif;
 dvi.gif;
 dvi_big.gif;
 eps.gif;
@@ -3203,17 +4319,22 @@ folder_pointer_closed.gif;
 folder_pointer_opened.gif;
 form.gif;
 form_big.gif;
+frowny.gif;
 gif.gif;
 gif_big.gif;
 header.gif;
+hrrm.gif;
 htm.gif;
 html.gif;
 html_big.gif;
+huh.gif;
 jar.gif;
 jar_big.gif;
 jpg.gif;
 jpg_big.gif;
 latex.gif;
+library.gif;
+lipsrsealed.gif;
 lite.gif;
 liteani.gif;
 litetext.gif;
@@ -3227,12 +4348,26 @@ lonlogo.gif;
 lonlogos.gif;
 lowerleft.gif;
 lowerright.gif;
+minilogo.gif;
 meta.gif;
 meta_big.gif;
 mov.gif;
 mov_big.gif;
 move_up.gif;
 move_down.gif;
+navmap.correct.gif;
+navmap.ellipsis.gif;
+navmap.open.gif;
+navmap.page.open.gif;
+navmap.page.closed.gif;
+navmap.page.open.nomanip.gif;
+navmap.page.closed.nomanip.gif;
+navmap.wrong.gif;
+navmap.folder.open.gif;
+navmap.folder.closed.gif;
+navmap.folder.open.nomanip.gif;
+navmap.folder.closed.nomanip.gif;
+neutral.gif;
 page.gif;
 page_big.gif;
 pdf.gif;
@@ -3243,6 +4378,7 @@ problem.gif;
 problem_big.gif;
 ps.gif;
 ps_big.gif;
+rolleyes.gif;
 quill.gif;
 quiz.gif;
 quiz_big.gif;
@@ -3251,6 +4387,8 @@ sequence.gif;
 sequence_big.gif;
 server.gif;
 server_big.gif;
+shocked.gif;
+smiley.gif;
 srvbad.gif;
 srvempty.gif;
 srvgood.gif;
@@ -3260,6 +4398,7 @@ survey.gif;
 survey_big.gif;
 tex.gif;
 tex_big.gif;
+tth.gif;
 txt.gif;
 txt_big.gif;
 unknown.gif;
@@ -3269,6 +4408,8 @@ upperright.gif;
 user.gif;
 user_big.gif;
 userauthentication.gif;
+userauthentication_pt.gif;
+userauthentication_de.gif;
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
@@ -3282,6 +4423,7 @@ whitespace6.gif;
 whitespace7.gif;
 whitespace8.gif;
 whitespace9.gif;
+wink.gif;
 xml.gif;
 xml_big.gif;
 zip.gif;
@@ -3299,6 +4441,8 @@ Miscellaneous resources.
 <filenames>
 authorfeed.gif;
 bomb.gif;
+smallFAQ.gif;
+smallBug.gif;
 cat_button.gif;
 chat.gif;
 eval_button.gif;
@@ -3309,9 +4453,9 @@ subm_button.gif
 </filenames>
 </fileglob>
 <file>
-<source>loncom/xml/tth.pm</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/tth.pm</target>
+<source>modules/TexConvert/tthperl/tth.pm</source>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/tth.pm</target>
+<target dist='default'>home/httpd/lib/perl/tth.pm</target>
 <categoryname>system file</categoryname>
 <description>
 perl module for invoking functions specific to TeX-to-HTML conversion
@@ -3335,6 +4479,62 @@ tested
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/LondConnection.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LondConnection.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     Manages a connection between a lonc proxy daemon and the lond server
+     in the remote node.
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+  <source>loncom/LondTransaction.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LondTransaction.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+	Handles a single lon-capa insternal transaction
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/HashIterator.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/HashIterator.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+      Provides support to iterate through opaque hashes hidden e.g. within 
+      object private data.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/Queue.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/Queue.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+     Provides a FIFO queue class.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/Stack.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/Stack.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+     Provides a LIFO stack class.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/loncnew</source>
+   <target dist='default'>home/httpd/perl/loncnew</target>
+   <categoryname>script</categoryname>
+   <description>
+	  Proxy server for remote loncapa requests.
+          Needs CPAN Event module.
+   </description>
+</file>
+<file>
 <source>loncom/configuration/Configuration.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/Configuration.pm</target>
 <categoryname>system file</categoryname>
@@ -3346,9 +4546,18 @@ entries.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/ConfigFileEdit.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Configuration file editing module
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>modules/TexConvert/tthperl/tth.so</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/tth.so</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/tth.so</target>
+<target dist='default'>home/httpd/lib/perl/tth.so</target>
 <categoryname>system file</categoryname>
 <description>
 shared library file for dynamic loading and unloading
@@ -3363,15 +4572,15 @@ related to this file during the build pr
 modules/TexConvert/tthperl/commands
 </build>
 <status>works/unverified</status>
-<dependencies>
+<privatedependencies>
 ../tthdynamic/tthfunc.c;
 ../ttmdynamic/ttmfunc.c
-</dependencies>
+</privatedependencies>
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.pm</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.pm</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.pm</target>
+<target dist='default'>home/httpd/lib/perl/capa.pm</target>
 <categoryname>system file</categoryname>
 <description>
 perl module for invoking functions specific to CAPA
@@ -3385,8 +4594,8 @@ the build process however.
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.bs</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.bs</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.bs</target>
+<target dist='default'>home/httpd/lib/perl/capa.bs</target>
 <categoryname>system file</categoryname>
 <description>
 bootstrap file associated with dynamic loading of this module on multiple
@@ -3401,8 +4610,8 @@ the build process however.
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.so</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.so</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.so</target>
+<target dist='default'>home/httpd/lib/perl/capa.so</target>
 <categoryname>system file</categoryname>
 <description>
 shared library file for dynamic loading and unloading
@@ -3417,6 +4626,7 @@ README;
 Makefile.PL;
 capa.i;
 commands;
+../../../CAPA/pProj/Makefile;
 ../../../CAPA/pProj/capaGrammarDef.y;
 ../../../CAPA/pProj/capaFormula.y;
 ../../../CAPA/pProj/capaLexerDef.flex;
@@ -3531,6 +4741,109 @@ Define unit prefixing and conversion for
 </description>
 </file>
 <fileglob>
+<glob>*.jpg</glob>
+<sourcedir>loncom/html/adm/lonInterFace/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonInterFace/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Pages headers</description>
+<filenames>
+admin.jpg;
+author.jpg;
+coordinator.jpg;
+header.jpg;
+student.jpg;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.jpg</glob>
+<sourcedir>loncom/html/adm/lonDomLogos/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonDomLogos/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Logos of LON-CAPA domains (jpg)</description>
+<filenames>
+headermsu.jpg;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/adm/lonDomLogos/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonDomLogos/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Logos of LON-CAPA domains (gif)</description>
+<filenames>
+103.gif;
+gerd.gif;
+mio.gif;
+msuvu.gif;
+ohiou.gif;
+rhs.gif;
+sfu.gif;
+tmcc.gif;
+umich.gif;
+worf.gif;
+annarbor.gif;
+elps.gif;
+gwu.gif;
+msudemo.gif;
+ndsu.gif;
+physnet.gif;
+sc.gif;
+Selwyn.gif;
+ucf.gif;
+unihalle.gif;
+wscc.gif;
+cps.gif;
+fsu.gif;
+lsd.gif;
+msu.gif;
+nsdl.gif;
+pmm.gif;
+sunysb.gif;
+udel.gif;
+uz.gif;
+fvl.gif;
+csm.gif;
+fit.gif;
+nau.gif;
+huji.gif;
+ifusp.gif;
+ucsc.gif;
+waverly.gif;
+cmich.gif;
+UNICAMP.gif;
+glps.gif;
+BCHS.gif;
+headersfu.gif;
+uwsp.gif;
+bsu.gif;
+wmston.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.tab</glob>
+<sourcedir>loncom/html/adm/lonDomColors/</sourcedir>
+<targetdir dist='default'>home/httpd/lonTabs/lonDomColors/</targetdir>
+<categoryname>conf</categoryname>
+<description>Designs of LON-CAPA domains</description>
+<filenames>
+annarbor.tab;
+default.tab;
+msu.tab;
+csm.tab;
+fit.tab;
+huji.tab;
+nau.tab;
+cmich.tab;
+ifusp.tab;
+ucsc.tab;
+UNICAMP.tab;
+fsu.tab;
+sfu.tab;
+wmston.tab;
+worf.tab;
+</filenames>
+</fileglob>
+<fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/adm/lonLCDfont/</sourcedir>
 <targetdir dist='default'>home/httpd/html/adm/lonLCDfont/</targetdir>
@@ -3573,6 +4886,12 @@ w.gif;
 x.gif;
 y.gif;
 z.gif;
+ö.gif;
+ä.gif;
+ü.gif;
+ä.gif;
+ö.gif;
+ü.gif;
 colon.gif;
 hyphen.gif;
 slash.gif;
@@ -3581,6 +4900,45 @@ space.gif;
 </fileglob>
 <fileglob>
 <glob>*.gif</glob>
+<sourcedir>loncom/html/res/adm/pages/pt/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/pt/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>icons used for the Portuguese LON-CAPA user interface</description>
+<filenames>
+anno_pt.gif;
+anot_pt.gif;
+bchat_pt.gif;
+catalog_pt.gif;
+ccrs_pt.gif;
+chrt_pt.gif;
+com_pt.gif;
+courses_pt.gif;
+cprv_pt.gif;
+cstr_pt.gif;
+docs_pt.gif;
+egrd_pt.gif;
+enrl_pt.gif;
+eval_pt.gif;
+fdbk_pt.gif;
+grds_pt.gif;
+keys_pt.gif;
+logout_pt.gif;
+nav_pt.gif;
+parm_pt.gif;
+pref_pt.gif;
+prt_pt.gif;
+res_pt.gif;
+roles_pt.gif;
+sbkm_pt.gif;
+spacer_pt.gif;
+sprs_pt.gif;
+src_pt.gif;
+stat_pt.gif;
+vbkm_pt.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
 <categoryname>graphic file</categoryname>
@@ -3591,6 +4949,15 @@ anot.gif;
 back.gif;
 bchat.gif;
 bkm.gif;
+bl_step1.gif
+bl_step2.gif
+bl_step3.gif
+bl_step4.gif
+bl_step5.gif
+bl_step6.gif
+bl_step7.gif
+bl_step8.gif
+bl_step9.gif
 brws.gif;
 catalog.gif;
 ccrs.gif;
@@ -3613,12 +4980,14 @@ grds.gif;
 group.gif;
 help.gif;
 info.gif;
+keys.gif;
 ledblink.gif;
 ledgreen.gif;
 ledoff.gif;
 ledon.gif;
 ledsend.gif;
 logout.gif;
+mcrs.gif;
 mrk.gif;
 nav.gif;
 next.gif;
@@ -3819,6 +5188,22 @@ blank.html;
 closechildren.html
 </filenames>
 </fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/res/adm/pages/reactionresponse/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Associated file for answering reactionresponse style questions
+</description>
+<filenames>
+reaction_editor.html;
+reaction_frame.html;
+reaction_help.html;
+reaction_viewer.html;
+reaction_window.html
+</filenames>
+</fileglob>
 <file>
 <source>loncom/html/res/adm/pages/bookmarkmenu/bookmarklib.js</source>
 <target dist='default'>
@@ -3829,9 +5214,18 @@ javascript for handling client-side inte
 </description>
 </file>
 <file>
+<source>loncom/build/CHECKRPMS</source>
+<target dist='default'>usr/local/loncapa/bin/CHECKRPMS</target>
+<categoryname>system script</categoryname>
+<description>
+manilla wrapper around check-rpms
+</description>
+<status>tested/documented/beta</status>
+</file>
+<file>
 <source>loncom/build/check-rpms</source>
 <target dist='default'>usr/local/loncapa/bin/check-rpms</target>
-<categoryname>root script</categoryname>
+<categoryname>system script</categoryname>
 <description>
 compare installed rpms with up-to-date distribution
 </description>
@@ -3868,12 +5262,14 @@ loncom/build/pod2html.sh check-rpms &gt;
 </file>
 <file>
 <source>loncom/build/loncaparestoreconfigurations</source>
-<target dist='default'>usr/sbin/loncaparestoreconfigurations</target>
+<target dist='default'>usr/local/loncapa/sbin/loncaparestoreconfigurations
+</target>
 <categoryname>script</categoryname>
 <description>
-restores .rpmsave files after a LON-CAPA-base upgrade
+Updates .lpmlnew files with previous settings.  Also supports alternative
+schemes of settings-updating and file-overwriting.
 </description>
-<status>deprecated</status>
+<status>works/unverified</status>
 </file>
 <file>
 <source>loncom/cron/loncapa</source>
@@ -3885,8 +5281,9 @@ file that specifies periodic processes t
 </file>
 <file>
 <source>loncom/ntp/step-tickers</source>
-<target dist='default'>etc/ntp/step-tickers</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/ntp_step-tickers
+</target>
+<categoryname>static conf</categoryname>
 <description>
 file that stimulates running of ntpdate upon init.d/xntpd initiation
 </description>
@@ -3938,11 +5335,60 @@ symbolic links to /etc/rc.d/init.d/lonco
 <file>
 <source>loncom/atalk/config</source>
 <target dist='default'>usr/local/loncapa/doc/conf_examples/config</target>
-<categoryname>conf</categoryname>
+<categoryname>static conf</categoryname>
 <description>
 configuration file to make LON-CAPA server file space accessible to
 Appleshares access (Macintosh)
 </description>
 </file>
+<file>
+  <source>loncom/interface/lonmodifycourse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmodifycourse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface to modifying a course's internal ENV values for automated
+    enrollement
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpopulate.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpopulate.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for configuring automated enrollment
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/Enrollment.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/Enrollment.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for automated enrollment
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/localenroll.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localenroll.pm</target>
+  <categoryname>conf</categoryname>
+  <description>
+    Local handler for automated enrollment.
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/localenroll.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localenroll-std.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Local handler for automated enrollment, standard version.
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/Autoenroll.pl</source>
+  <target dist='default'>home/httpd/perl/Autoenroll.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Local handler for automated enrollment, standard version.
+  </description>
+</file>
 </files>
 </lpml>