--- doc/loncapafiles/loncapafiles.lpml	2002/04/21 23:02:58	1.117
+++ doc/loncapafiles/loncapafiles.lpml	2004/06/08 21:39:30	1.360
@@ -1,9 +1,8 @@
 <!DOCTYPE lpml PUBLIC "-//TUX/DTD lpml 1.0 Final//EN"
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
-<!-- Scott Harrison -->
 
-<!-- $Id: loncapafiles.lpml,v 1.117 2002/04/21 23:02:58 harris41 Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.360 2004/06/08 21:39:30 albertel Exp $ -->
 
 <!--
 
@@ -100,6 +99,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0444</chmod><chown dist='default'>root:root</chown>
   <abbreviation>static</abbreviation>
 </category>
+<category name="www static conf" type="runtime">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>static</abbreviation>
+</category>
+<category name="www static conf" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>static</abbreviation>
+</category>
 <category name="conf" type="runtime">
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>configurable</abbreviation>
@@ -140,6 +147,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>systemfile</abbreviation>
 </category>
+<category name="system script" type="runtime">
+  <chmod dist='default'>0755</chmod><chown dist='default'>root:root</chown>
+  <abbreviation>systemscript</abbreviation>
+</category>
+<category name="system script" type="development">
+  <chmod dist='default'>0755</chmod><chown dist='default'>root:root</chown>
+  <abbreviation>systemscript</abbreviation>
+</category>
 <category name="root script" type="runtime">
   <chmod dist='default'>0700</chmod><chown dist='default'>root:root</chown>
   <abbreviation>rootscript</abbreviation>
@@ -216,118 +231,119 @@ echo '**********************************
 <rpmRequires>
 <item>PreReq: LON-CAPA-setup</item>
 <item>PreReq: apache</item>
-<item>PreReq: /etc/httpd/conf/access.conf</item>
+<item>PreReq: /etc/httpd/conf/httpd.conf</item>
 </rpmRequires>
 </rpm>
 <directories>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for configuration files</description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>etc/atalk</targetdir>
-  <categoryname>standard</categoryname>
-  <description>appletalk configuration files</description>
-</directory>
-<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/cron.d</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for running time-based "jobs"
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf</targetdir>
   <categoryname>standard</categoryname>
   <description>web configuration files</description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>etc/ntp</targetdir>
-  <categoryname>standard</categoryname>
-  <description>configuration directory for network time protocol</description>
-</directory>
-<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/pam.d</targetdir>
   <categoryname>standard</categoryname>
   <description>configuration directory for password authentication mechanism
   </description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='redhat7 redhat7.1'>etc/samba</targetdir>
-  <categoryname>standard</categoryname>
-  <description>configuration directory for samba authentication
-  </description>
-</directory>
-<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian2.2'>etc/init.d</targetdir>
+  <targetdir dist='debian'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc0.d</targetdir>
+  <targetdir dist='debian'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc1.d</targetdir>
+  <targetdir dist='debian'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc2.d</targetdir>
+  <targetdir dist='debian'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc3.d</targetdir>
+  <targetdir dist='debian'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc4.d</targetdir>
+  <targetdir dist='debian'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc5.d</targetdir>
+  <targetdir dist='debian'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc6.d</targetdir>
+  <targetdir dist='debian'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lonTabs</targetdir>
   <categoryname>standard</categoryname>
   <description>tab-formatted reference files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd</targetdir>
   <categoryname>standard</categoryname>
   <description>start of the web server tree</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl</targetdir>
   <categoryname>server readonly</categoryname>
   <description>perl scripts for managing the LON-CAPA system</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl/logs</targetdir>
   <categoryname>server standard</categoryname>
   <description>location where system performance and error logs are kept
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/lon-status/londchld</targetdir>
   <categoryname>server standard</categoryname>
   <description>
@@ -336,112 +352,263 @@ Used by lond parent to check if children
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl/tmp</targetdir>
   <categoryname>server standard</categoryname>
   <description>location where temporary files (for caching) are stored
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/prtspool</targetdir>
   <categoryname>server standard</categoryname>
   <description>for the output of lonprintout.pm
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lib</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>location of LON-CAPA software modules and
+extensions</description>
+</directory>
+<directory dist='default'>
+  <!-- Must protect localauth.pm/localenroll.pm from extinction. -->
+  <protectionlevel>weak_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA non web mod-perl handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/Apache</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA web mod-perl handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lib/perl/Apache/localize</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>location of LON-CAPA MakeText translation files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/HTML</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of HTML specific perl module fixes and additions
   </description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>home/httpd/lonIDs</targetdir>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lib/perl/LONCAPA</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>location of HTML specific perl module fixes and additions
+  </description>
+</directory>
+<directory dist='default'>
+   <protectionlevel>modest_delete</protectionlevel>
+ <targetdir dist='default'>home/httpd/lonIDs</targetdir>
   <categoryname>server standard</categoryname>
   <description>cookie jar</description>
 </directory>
 <directory dist='default'>
+   <protectionlevel>modest_delete</protectionlevel>
+ <targetdir dist='default'>home/httpd/scantron</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>uploaded scantron forms directory</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/sockets</targetdir>
   <categoryname>server standard</categoryname>
   <description>lonc's sockets</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/sockets/delayed</targetdir>
   <categoryname>server standard</categoryname>
   <description>lonc's sockets (delayed)</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/cgi-bin</targetdir>
   <categoryname>standard</categoryname>
   <description>location of cgi scripts</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html</targetdir>
   <categoryname>server standard</categoryname>
   <description>location of web-accessible file tree</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res</targetdir>
   <categoryname>server standard</categoryname>
   <description>root of resource tree</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/userfiles</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>root for user uploaded files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm</targetdir>
   <categoryname>server readonly</categoryname>
   <description>unauthenticated resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Web directory for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/images</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Images for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/lang</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Language files for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Plugins for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>FullPage plugin for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage/img</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>FullPage plugin for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage/lang</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>FullPage plugin for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/plugins/FullPage/popups</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>FullPage plugin for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/htmlarea/popups</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Popup windows for HTMLArea</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/rat</targetdir>
   <categoryname>server readonly</categoryname>
   <description>home of the rat</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation</description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>home/httpd/html/adm/help/api</targetdir>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jme</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JME support files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/helper</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>XML specifications for helpers</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/gif</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation gif files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/eps</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation eps files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/tex</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation tex files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/tex/ru</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Russian online help documentation tex files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/png</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation png files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/lib/perl</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation for the LON-CAPA programming
 interface</description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>home/httpd/html/adm/help/api/Apache</targetdir>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/lib/perl/Apache
+  </targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation for the LON-CAPA programming
 interface, Apache (mod_perl) handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/scripts</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation for the LON-CAPA programming
 interface, Apache (mod_perl) handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonIcons</targetdir>
   <categoryname>server readonly</categoryname>
   <description>graphic widgets</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonMisc</targetdir>
   <categoryname>server readonly</categoryname>
   <description>miscellaneous resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonKaputt</targetdir>
   <categoryname>server readonly</categoryname>
   <description>error warnings and icons</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lonUsers</targetdir>
   <categoryname>server standard</categoryname>
   <description>Home directories of local users.  There is a five-tier
@@ -457,79 +624,157 @@ roles.db) which specify the roles and pr
 LON-CAPA system.</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/MathML</targetdir>
   <categoryname>server readonly</categoryname>
   <description>mathematics markup language resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/lib/templates</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Resource library
+  </description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/includes</targetdir>
   <categoryname>server readonly</categoryname>
   <description>files useful for including within customized scripting
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/includes/templates
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description>template files useful for customized scripts</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/lon-status</targetdir>
   <categoryname>server standard</categoryname>
-  <description>status reports</description>
+  <description>status reports; online logs are kept that
+are viewable over the world-wide web</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages</targetdir>
   <categoryname>server readonly</categoryname>
   <description>web user interface resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/adm/pages/pt</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>web user interface resources - Portuguese</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>web user interface resources</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/lonLCDfont</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>LCD font for remote control</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/lonDomLogos</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Logos for LON-CAPA domains</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lonTabs/lonDomColors</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Designs for LON-CAPA domains</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/lonInterFace</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Page headers and graphical interface files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/bookmarkmenu
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description>bookmark user interface code</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/annotations
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description></description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/indexericons
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description>icons that help depict the file system (outdated)</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
-  <targetdir dist='debian2.2'>usr/local/lib/perl/5.6.0</targetdir>
+  <targetdir dist='redhat8 redhat9'>usr/lib/perl5/site_perl/5.8.0</targetdir>
+  <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
   </description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>usr/local/bin</targetdir>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>usr/local/loncapa/bin</targetdir>
+  <categoryname>standard</categoryname>
+  <description>local binary files for loncapa</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>usr/local/loncapa/doc</targetdir>
+  <categoryname>standard</categoryname>
+  <description>local documentation files for loncapa</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>usr/local/loncapa/doc/conf_examples</targetdir>
   <categoryname>standard</categoryname>
-  <description>local binary files</description>
+  <description>examples of configuration files for secondary
+ services</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>usr/local/loncapa/sbin</targetdir>
+  <categoryname>standard</categoryname>
+  <description>local "auxiliary" binary files for loncapa</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/local/man/man1</targetdir>
   <categoryname>standard</categoryname>
   <description>local manual pages</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/man/man1</targetdir>
   <categoryname>standard</categoryname>
   <description>manual pages</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/man/man3</targetdir>
   <categoryname>standard</categoryname>
   <description>manual pages</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/sbin</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for superuser executables</description>
@@ -538,8 +783,8 @@ LON-CAPA system.</description>
 <files>
 <file>
 <source>loncom/krb.conf</source>
-<target dist='default'>etc/krb.conf</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/krb.conf</target>
+<categoryname>static conf</categoryname>
 <description>
 which Kerberos server to contact for specified Kerberos domains
 </description>
@@ -564,25 +809,23 @@ each list element consists of only two s
 <target dist='default'>etc/httpd/conf/loncapa.conf</target>
 <categoryname>conf</categoryname>
 <description>
+<p>
 The goal of this file is to implement all LON-CAPA specific
-customization of the Apache web server.
-</description>
-</file>
-<file>
-<source>loncom/access.conf</source>
-<target dist='default'>etc/httpd/conf/access.conf</target>
-<categoryname>conf</categoryname>
-<description>
-This file has two major functions.
-For the Apache web server, it defines a global
-access configuration which defines what server options (Indexes", "Includes",
-"FollowSymLinks", "ExecCGI", or "MultiViews") are associated
-with specific directories ("/", "/home/httpd/html", "/home/httpd/cgi-bin",
-and "/usr/doc").  For the LON-CAPA network server and perl module
-handlers, it defines machine specific settings (lonHostID, lonRole,
-lonAdmEMail, lonDefDomain, lonLoadLim, lonExpire, and lonReceipt)
-and internal machine settings for specific directories, socket ports,
-and browser detection logic.
+customization of the Apache web server (most all of these values
+require manual input from the system administrator at some point).
+The values in this file, as opposed to loncapa_apache.conf, are
+meant to be machine and institution specific.
+</p>
+<p>
+For the LON-CAPA network server and perl module
+handlers, it defines machine specific settings including lonHostID, lonRole,
+lonAdmEMail, lonDefDomain, lonLoadLim, lonExpire, and lonReceipt.
+</p>
+<p>
+This file should not be viewable by regular users of the system.
+Only root and www should be able to view the contents of this file
+since lonReceipt is sensitive.
+</p>
 </description>
 <note>
 <b>configure</b>
@@ -604,6 +847,25 @@ MySQL database</td></tr>
 </note>
 </file>
 <file>
+<source>loncom/loncapa_apache.conf</source>
+<target dist='default'>etc/httpd/conf/loncapa_apache.conf</target>
+<categoryname>static conf</categoryname>
+<description>
+The goal of this file is to implement all LON-CAPA specific
+customization of the Apache web server that does not require
+user input.
+
+For the Apache web server, it defines a global
+access configuration which defines what server options (Indexes", "Includes",
+"FollowSymLinks", "ExecCGI", or "MultiViews") are associated
+with specific directories ("/", "/home/httpd/html", "/home/httpd/cgi-bin",
+and "/usr/doc").  For the LON-CAPA network server and perl module
+handlers, it defines 
+and internal machine settings for specific directories, socket ports,
+the www@localhost MySQL password, and browser detection logic.
+</description>
+</file>
+<file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
 <categoryname>static conf</categoryname>
@@ -611,17 +873,24 @@ MySQL database</td></tr>
 This file provides initializations for perl handlers.  It adjusts what
 the module path space is (so as to include /home/httpd/lib/perl/Apache) as
 well as causing the Apache module to be used for every perl handler.
-<tt>startup.pl</tt> is invoked by <tt>access.conf</tt>.
+<tt>startup.pl</tt> is invoked by <tt>loncapa_apache.conf</tt>.
 </description>
 </file>
 <file>
-<source>loncom/publisher/thesaurus.dat</source>
-<target dist='default'>home/httpd/lonTabs/thesaurus.dat</target>
-<categoryname>static conf</categoryname>
+<source>loncom/thesaurus/thesaurus.db</source>
+<target dist='default'>home/httpd/lonTabs/thesaurus.db</target>
+<categoryname>system file</categoryname>
 <description>
-Custom Thesaurus file for LON-CAPA, in the format
-word@wordID@frequency@relatedwordID:frequency,relatedwordID:frequency,...
+Thesaurus database file to be built from loncom/thesaurus/rawkey.txt
 </description>
+<build trigger='always run'>
+loncom/thesaurus/build_thesaurus_wrapper.sh
+</build>
+<dependencies>
+rawkey.txt;
+build_thesaurus_db.pl;
+build_thesaurus_wrapper.sh
+</dependencies>
 </file>
 <file>
 <source>loncom/interface/mydesk.tab</source>
@@ -640,8 +909,16 @@ Descriptive list of file extensions, and
 </description>
 </file>
 <file>
-<source>loncom/cgi/barcode.gif</source>
-<target dist='default'>home/httpd/cgi-bin/barcode.gif</target>
+<source>loncom/interface/filecategories.tab</source>
+<target dist='default'>home/httpd/lonTabs/filecategories.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+Descriptive list of file extensions and broad categorization.
+</description>
+</file>
+<file>
+<source>loncom/cgi/barcode.png</source>
+<target dist='default'>home/httpd/cgi-bin/barcode.png</target>
 <categoryname>script</categoryname>
 <description>
 Dynamically outputs a barcode based on a CGI passed encode=BARCODEVALUE
@@ -649,6 +926,38 @@ parameter.
 </description>
 </file>
 <file>
+<source>loncom/cgi/decompress.pl</source>
+<target dist='default'>home/httpd/cgi-bin/decompress.pl</target>
+<categoryname>script</categoryname>
+<description>
+Decompresses an archive into its files inside of the construction space
+</description>
+</file>
+<file>
+<source>loncom/cgi/takeoffline.pl</source>
+<target dist='default'>home/httpd/cgi-bin/takeoffline.pl</target>
+<categoryname>script</categoryname>
+<description>
+Take machine offline
+</description>
+</file>
+<file>
+<source>loncom/cgi/takeonline.pl</source>
+<target dist='default'>home/httpd/cgi-bin/takeonline.pl</target>
+<categoryname>script</categoryname>
+<description>
+Take machine online
+</description>
+</file>
+<file>
+<source>loncom/cgi/thumbnail.gif</source>
+<target dist='default'>home/httpd/cgi-bin/thumbnail.gif</target>
+<categoryname>script</categoryname>
+<description>
+Produces a thumbnail image of the url given
+</description>
+</file>
+<file>
 <source>loncom/cgi/clusterstatus.pl</source>
 <target dist='default'>home/httpd/cgi-bin/clusterstatus.pl</target>
 <categoryname>script</categoryname>
@@ -657,8 +966,40 @@ utility cgi script to view status of clu
 </description>
 </file>
 <file>
-<source>loncom/cgi/graph.gif</source>
-<target dist='default'>home/httpd/cgi-bin/graph.gif</target>
+<source>loncom/cgi/translator.pl</source>
+<target dist='default'>home/httpd/cgi-bin/translator.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to enter translations
+</description>
+</file>
+<file>
+<source>loncom/build/system_dependencies/perltest.pl</source>
+<target dist='default'>home/httpd/cgi-bin/perltest.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to view status of perl modules
+</description>
+</file>
+<file>
+<source>loncom/build/system_dependencies/cpan_distributions.txt</source>
+<target dist='default'>home/httpd/cgi-bin/cpan_distributions.txt</target>
+<categoryname>interface file</categoryname>
+<description>
+utility cgi script to view status of perl modules
+</description>
+</file>
+<file>
+  <source>loncom/cgi/loncgi.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/loncgi.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a common interface to LON-CAPA cookies and environment.
+  </description>
+</file>
+<file>
+<source>loncom/cgi/graph.png</source>
+<target dist='default'>home/httpd/cgi-bin/graph.png</target>
 <categoryname>script</categoryname>
 <description>
 Dynamically outputs a graph especially for lonstatistics.pm.
@@ -693,6 +1034,14 @@ Dynamically outputs X-Y plots with point
 </description>
 </file>
 <file>
+<source>loncom/cgi/imagechoice.pl</source>
+<target dist='default'>home/httpd/cgi-bin/imagechoice.pl</target>
+<categoryname>script</categoryname>
+<description>
+Helper to select image coordinates in writing homework involving images.
+</description>
+</file>
+<file>
 <source>loncom/interface/printout.pl</source>
 <target dist='default'>home/httpd/cgi-bin/printout.pl</target>
 <categoryname>script</categoryname>
@@ -723,6 +1072,228 @@ coil,loop,field,magnetic
 and simply prints this text-only (no markup) to the browser
 </description>
 </file>
+<file>
+<source>loncom/cgi/metadata_harvest.pl</source>
+<target dist='default'>home/httpd/cgi-bin/metadata_harvest.pl</target>
+<categoryname>script</categoryname>
+<description>
+a cgi-script (not mod_perl), which contacts MySQL and pulls
+out all records in "|"-separated format.
+To be used by very simple harvesting engines.
+</description>
+</file>
+<file>
+<source>loncom/homework/simpleproblem.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/simpleproblem.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for DOCS "Simple Problem"
+</description>
+</file>
+<file>
+<source>loncom/homework/simpleproblem.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/simpleproblem.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for DOCS "Simple Problem"
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/examupload.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/examupload.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for score upload
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/examupload.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/examupload.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for score upload
+</description>
+</file>
+<fileglob>
+<glob>*.js</glob>
+<sourcedir>loncom/html/htmlarea/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+dialog.js;
+htmlarea.js;
+popupdiv.js;
+popupwin.js;
+</filenames>
+</fileglob>
+<file>
+<source>loncom/html/htmlarea/htmlarea.css</source>
+<target dist='default'>home/httpd/html/htmlarea/htmlarea.css</target>
+<categoryname>interface file</categoryname>
+<description>
+Stylesheet for HTMLArea
+</description>
+</file>
+<file>
+<source>loncom/html/htmlarea/plugins/FullPage/full-page.js</source>
+<target dist='default'>home/httpd/html/htmlarea/plugins/FullPage/full-page.js</target>
+<categoryname>interface file</categoryname>
+<description>
+FullPage plugin for HTMLArea
+</description>
+</file>
+<fileglob>
+<glob>*.js</glob>
+<sourcedir>loncom/html/htmlarea/plugins/FullPage/lang/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/plugins/FullPage/lang/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Language files belonging to FullPage plugin for HTMLArea.
+</description>
+<filenames>
+en.js;
+ro.js;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/htmlarea/plugins/FullPage/img/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/plugins/FullPage/img/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Image files belonging to FullPage plugin for HTMLArea.
+</description>
+<filenames>
+docprop.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.html</glob>
+<sourcedir>loncom/html/htmlarea/plugins/FullPage/popups/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/plugins/FullPage/popups/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Popup files belonging to FullPage plugin for HTMLArea.
+</description>
+<filenames>
+docprop.html;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.js</glob>
+<sourcedir>loncom/html/htmlarea/lang/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/lang/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+b5.js;
+de.js;
+fi.js;
+it.js;
+nl.js;
+ro.js;
+vn.js;
+en.js;
+fr.js;
+ja-utf8.js;
+pl.js;
+ru.js;
+da.js;
+es.js;
+gb.js;
+nb.js;
+pt_br.js;
+se.js;
+he.js;
+hu.js;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/htmlarea/popups/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/popups/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+about.html;
+insert_image.html;
+old_insert_image.html;
+blank.html;
+editor_help.html;
+insert_table.html;
+custom2.html;
+fullscreen.html;
+old-fullscreen.html;
+select_color.html;
+popup.js;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/htmlarea/images/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/htmlarea/images/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Files belonging to HTMLArea.
+</description>
+<filenames>
+ed_left_to_right.gif;
+ed_right_to_left.gif;
+ed_save.gif;
+ed_delete.gif;
+ed_link.gif;
+ed_about.gif;
+ed_format_bold.gif;
+ed_list_bullet.gif;
+ed_align_center.gif;
+ed_format_italic.gif;
+ed_list_num.gif;
+ed_align_justify.gif;
+ed_format_strike.gif;
+ed_paste.gif;
+ed_align_left.gif;
+ed_format_sub.gif;
+ed_redo.gif;
+ed_align_right.gif;
+ed_format_sup.gif;
+ed_show_border.gif;
+ed_blank.gif;
+ed_format_underline.gif;
+ed_splitcel.gif;
+ed_charmap.gif;
+ed_help.gif;
+ed_undo.gif;
+ed_color_bg.gif;
+ed_hr.gif;
+fullscreen_maximize.gif;
+ed_color_fg.gif;
+ed_html.gif;
+fullscreen_minimize.gif;
+ed_copy.gif;
+ed_image.gif;
+insert_table.gif;
+ed_custom.gif;
+ed_indent_less.gif;
+ed_cut.gif;
+ed_indent_more.gif;
+ed_math.gif;
+ed_math_eqn.gif;
+</filenames>
+</fileglob>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/homework/templates/</sourcedir>
@@ -737,12 +1308,25 @@ blank.library;
 blank.library.meta;
 blank.problem;
 blank.problem.meta;
-formula.problem;
-formula.problem.meta;
+ClickImageExample.problem;
+ClickImageExample.problem.meta;
+Essay.problem;
+Essay.problem.meta;
+examupload.problem;
+examupload.problem.meta;
+man1.jpg;
+man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
+Plot.problem.meta;
+Plot_curve.problem;
+Plot_curve.problem.meta;
+Plot_data.problem;
+Plot_data.problem.meta;
 RadioResponse.problem;
 RadioResponse.problem.meta;
+RandomLabelExample.problem;
+RandomLabelExample.problem.meta;
 SelectFromOptions-4ConceptGoups.problem;
 SelectFromOptions-4ConceptGoups.problem.meta;
 SelectFromOptions-5ConceptGoups.problem;
@@ -755,12 +1339,19 @@ SelectFromOptions-8ConceptGoups.problem;
 SelectFromOptions-8ConceptGoups.problem.meta;
 SelectFromOptions-Simple.problem;
 SelectFromOptions-Simple.problem.meta;
+SimpleStringResponse.problem.meta;
 script.library;
 script.library.meta;
-SimpleStringResponse.problem;
-SimpleStringResponse.problem.meta;
+SimpleFormula.problem;
+SimpleFormula.problem.meta;
 StringResponse.problem;
-StringResponse.problem.meta
+StringResponse.problem.meta;
+SimpleMatching.problem;
+SimpleMatching.problem.meta;
+SimpleRank.problem;
+SimpleRank.problem.meta;
+SimpleTrueFalse.problem;
+SimpleTrueFalse.problem.meta
 </filenames>
 </fileglob>
 <file>
@@ -784,8 +1375,8 @@ Built from Glabel.java.  Still working o
 </note>
 </file>
 <file>
-<source>loncom/interface/default.assesscalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.assesscalc
+<source>loncom/interface/spreadsheet/default_assesscalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_assesscalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -793,8 +1384,8 @@ Default spreadsheet for individual asses
 </description>
 </file>
 <file>
-<source>loncom/interface/default.studentcalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.studentcalc
+<source>loncom/interface/spreadsheet/default_studentcalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_studentcalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -802,8 +1393,8 @@ Default spreadsheet for assessment of st
 </description>
 </file>
 <file>
-<source>loncom/interface/default.classcalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.classcalc
+<source>loncom/interface/spreadsheet/default_classcalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_classcalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -829,14 +1420,30 @@ and privileges available in the network
 </description>
 </file>
 <file>
+<source>loncom/managers.tab</source>
+<target dist='default'>home/httpd/lonTabs/managers.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+List of machines allowed to pass along updates to hosts.tab and domain.tab
+</description>
+</file>
+<file type="private">
 <source>loncom/hosts.tab</source>
 <target dist='default'>home/httpd/lonTabs/hosts.tab</target>
-<categoryname>static conf</categoryname>
+<categoryname>www static conf</categoryname>
 <description>
 List of all machines in the LON-CAPA network.  Relates <tt>lonHostID</tt> to
 <tt>lonDefDomain</tt> and <u>IP address</u>.
 </description>
 </file>
+<file type="private">
+<source>loncom/domain.tab</source>
+<target dist='default'>home/httpd/lonTabs/domain.tab</target>
+<categoryname>www static conf</categoryname>
+<description>
+List of all domains in the LON-CAPA network. Lists the name name of the domain and any default authentication.
+</description>
+</file>
 <file>
 <source>loncom/spare.tab</source>
 <target dist='default'>home/httpd/lonTabs/spare.tab</target>
@@ -860,16 +1467,15 @@ in <tt>access.conf</tt>
 <file>
 <source>loncom/htpasswd</source>
 <target dist='default'>home/httpd/lonTabs/htpasswd</target>
-<categoryname>conf</categoryname>
+<categoryname>static conf</categoryname>
 <description>
 Basic auth password to access /lon-status and /server-status
 </description>
 </file>
 <file>
 <source>loncom/smb.conf</source>
-<target dist='default'>etc/smb.conf</target>
-<target dist='redhat7 redhat7.1'>etc/samba/smb.conf</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/smb.conf</target>
+<categoryname>static conf</categoryname>
 <description>
 configuration file to make LON-CAPA server file space accessible to network
 neighborhood
@@ -877,8 +1483,8 @@ neighborhood
 </file>
 <file>
 <source>loncom/ntp.conf</source>
-<target dist='default'>etc/ntp.conf</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/ntp.conf</target>
+<categoryname>static conf</categoryname>
 <description>
 which NTP server to contact for information (XNTP3 standard)
 </description>
@@ -902,6 +1508,40 @@ Batch script for updating SQL metadata d
 </description>
 </file>
 <file>
+<source>loncom/metadata_database/cleanup_database.pl</source>
+<target dist='default'>home/httpd/perl/cleanup_database.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for removing temporary tables from the SQL metadata database.
+</description>
+</file>
+<file>
+<source>loncom/misc/cleanup_file_caches.pl</source>
+<target dist='default'>home/httpd/perl/cleanup_file_caches.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for removing files not accessed within 24 hours from the 
+/home/httpd/prtspool and /home/httpd/html/userfiles/ directories.
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/seed_accesscount.pl</source>
+<target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for moving access count data from nohist_resevaldata.db to
+nohist_accesscount.db.
+</description>
+</file>
+<file>
+<source>loncom/lonhttpd</source>
+<target dist='default'>home/httpd/perl/lonhttpd</target>
+<categoryname>script</categoryname>
+<description>
+Small fry httpd on port 8080
+</description>
+</file>
+<file>
 <source>loncom/lonc</source>
 <target dist='default'>home/httpd/perl/lonc</target>
 <categoryname>script</categoryname>
@@ -984,12 +1624,24 @@ echo 'pod2html lond'
 </dependencies>
 </file>
 <file>
+<source>loncom/build/CHECKRPMS</source>
+<target dist='default'>home/httpd/cgi-bin/CHECKRPMS</target>
+<categoryname>script</categoryname>
+<description>CGI script that checks status of RPMs</description>
+</file>
+<file>
 <source>loncom/cgi/loncron.pl</source>
 <target dist='default'>home/httpd/cgi-bin/loncron.pl</target>
 <categoryname>script</categoryname>
 <description>CGI script that starts and pipes output of loncron</description>
 </file>
 <file>
+<source>loncom/cgi/userstatus.pl</source>
+<target dist='default'>home/httpd/cgi-bin/userstatus.pl</target>
+<categoryname>script</categoryname>
+<description>CGI script that shows users currently on machine</description>
+</file>
+<file>
 <source>loncom/loncron</source>
 <target dist='default'>home/httpd/perl/loncron</target>
 <categoryname>script</categoryname>
@@ -1059,6 +1711,17 @@ new user.
 <status>being updated</status>
 </file>
 <file>
+<source>loncom/lchtmldir</source>
+<target dist='default'>home/httpd/perl/lchtmldir</target>
+<categoryname>setuid script</categoryname>
+<description>
+Manages the file system ramifications of adding author mode to a user. 
+If necessary a public_html diretory is added, permissions and ownership are
+set according to the user's authentication mode.
+</description>
+<status>New file</status>
+</file>
+<file>
 <source>loncom/lcuserdel</source>
 <target dist='default'>home/httpd/perl/lcuserdel</target>
 <categoryname>setuid script</categoryname>
@@ -1097,6 +1760,22 @@ GNU General Public License.  Long live t
 </description>
 </file>
 <file>
+<source>loncom/license/httpi.license</source>
+<target dist='default'>home/httpd/html/adm/httpi.license</target>
+<categoryname>interface file</categoryname>
+<description>
+HTTPi webserver license
+</description>
+</file>
+<file>
+<source>loncom/license/httpi.readme</source>
+<target dist='default'>home/httpd/html/adm/httpi.readme</target>
+<categoryname>interface file</categoryname>
+<description>
+HTTPi webserver readme 
+</description>
+</file>
+<file>
 <source>loncom/license/about.html</source>
 <target dist='default'>home/httpd/html/adm/about.html</target>
 <categoryname>interface file</categoryname>
@@ -1122,6 +1801,31 @@ Interface file for responding to imprope
 </description>
 </file>
 <file>
+<source>loncom/html/adm/notinit.html</source>
+<target dist='default'>home/httpd/html/adm/notinit.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Interface file for responding to accessing uploaded resources without
+re-initializing course.
+</description>
+</file>
+<file>
+<source>loncom/html/adm/overloaded.txt</source>
+<target dist='default'>home/httpd/html/adm/overloaded.txt</target>
+<categoryname>interface file</categoryname>
+<description>
+Interface file for responding to overload situations.
+</description>
+</file>
+<file>
+<source>loncom/html/adm/loginproblems.html</source>
+<target dist='default'>home/httpd/html/adm/loginproblems.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Help page for login problems.
+</description>
+</file>
+<file>
 <source>loncom/xml/physnet.sty</source>
 <target dist='default'>home/httpd/html/res/adm/includes/physnet.sty</target>
 <categoryname>static conf</categoryname>
@@ -1139,7 +1843,7 @@ The relevant conditions and metadata to
 </description>
 </file>
 <file>
-<source>loncom/misc/un_keyword.tab</source>
+<source>loncom/thesaurus/un_keyword.tab</source>
 <target dist='default'>home/httpd/html/res/adm/includes/un_keyword.tab</target>
 <categoryname>conf</categoryname>
 <description>
@@ -1148,6 +1852,14 @@ content.
 </description>
 </file>
 <file>
+<source>loncom/homework/scantronformat.tab</source>
+<target dist='default'>home/httpd/lonTabs/scantronformat.tab</target>
+<categoryname>conf</categoryname>
+<description>
+Different configs for scantron input files.
+</description>
+</file>
+<file>
 <source>loncom/publisher/packages.tab</source>
 <target dist='default'>home/httpd/lonTabs/packages.tab</target>
 <categoryname>static conf</categoryname>
@@ -1193,6 +1905,114 @@ Edit handler for rat maps; TeX content h
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/londocs.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/londocs.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for course documents
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonchat.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonchat.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for chat
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonchatfetch.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonchatfetch.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for periodically fetch new lines of chat
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonannounce.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonannounce.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up announcements and calendar
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonsyllabus.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsyllabus.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up syllabus
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/homework/lonsimpleproblemedit.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsimpleproblemedit.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to set parameters for simple homework problems
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonsimplepage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsimplepage.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up simple page
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/interface/lonpickcode.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpickcode.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler to pick a CODE from the list of possible CODEs
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickstudent.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickstudent.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a student from classlist
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a courseid from a list of courses
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonbulletin.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonbulletin.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up bulletin board
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonaboutme.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonaboutme.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up personal info
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/loncfile.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncfile.pm</target>
 <categoryname>handler</categoryname>
@@ -1203,6 +2023,576 @@ construction space menu.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/publisher/testbankimport.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/testbankimport.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to convert plain text questions in a testbank file to LON-CAPA problems.
+Called by selecting testbank option when uploading file to construction space.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsimport.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsimport.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to import courses from other CMSs packaged in IMS 1.1 content package
+format into LON-CAPA Construction space.
+Called by selecting IMS package option when uploading file to construction space.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsimportdocs.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsimportdocs.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to import courses from other CMSs packaged in IMS 1.1 content package
+format into a LON-CAPA course via DOCS.
+Called using Import IMS package button displayed in Special documents column in DOCS display.  
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsprocessor.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsprocessor.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains routines used by imsimport handlers when importing contents of IMS 
+packages into construction space, or into a course directly via DOCS.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonhelp.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhelp.pm</target>
+<categoryname>handler</categoryname>
+<description>
+The .tex file help handler.
+</description>
+<status>works/unverified</status>
+<build trigger='always run'>
+loncom/html/adm/help/buildMakeWrapper
+</build>
+<dependencies>
+Makefile;
+buildMakeWrapper
+</dependencies>
+</file>
+<file>
+<source>loncom/html/adm/help/abouthelp.html</source>
+<target dist='default'>home/httpd/html/adm/help/abouthelp.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Index file for the help system
+</description>
+</file>
+<file>
+<source>doc/help/author.manual.access.tex</source>
+<target dist='default'>home/httpd/html/adm/help/tex/author.manual.access.tex
+</target>
+<categoryname>interface file</categoryname>
+<description>
+The pseudo-LaTeX file to allow people to read the author's manual online, with
+a somewhat clumsy interface.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>doc/help/course.manual.access.tex</source>
+<target dist='default'>home/httpd/html/adm/help/tex/course.manual.access.tex
+</target>
+<categoryname>interface file</categoryname>
+<description>
+The pseudo-LaTeX file to allow people to read the course administrator's
+manual online, with a somewhat clumsy interface.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>doc/help/author.manual.ps</source>
+<target dist='default'>home/httpd/html/adm/help/author.manual.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+The postscript Author's Manual
+</description>
+<status>works/unverified</status>
+<dependencies>
+doc/help/author.manual.texxml;
+doc/help/latexSplitter.py;
+doc/help/rebuildLabelHash.pl;
+doc/help/render.texxml.pl;
+doc/help/simpleEdit.py;
+doc/help/texxml2indextex.pl;
+doc/help/texxml2latex.pl;
+loncom/build/buildHelp.sh;
+loncom/build/help_graphics_converter.pl
+</dependencies>
+</file>
+<file>
+<source>doc/help/author.manual.pdf</source>
+<target dist='default'>home/httpd/html/adm/help/author.manual.pdf</target>
+<categoryname>handler</categoryname>
+<description>
+The PDF Author's Manual
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>doc/help/course.manual.ps</source>
+<target dist='default'>home/httpd/html/adm/help/course.manual.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+The postscript Course Manual
+</description>
+<status>works/unverified</status>
+<dependencies>
+doc/help/course.manual.texxml;
+doc/help/latexSplitter.py;
+doc/help/rebuildLabelHash.pl;
+doc/help/render.texxml.pl;
+doc/help/simpleEdit.py;
+doc/help/texxml2indextex.pl;
+doc/help/texxml2latex.pl;
+loncom/build/buildHelp.sh;
+loncom/build/help_graphics_converter.pl
+</dependencies>
+</file>
+<file>
+<source>doc/help/course.manual.pdf</source>
+<target dist='default'>home/httpd/html/adm/help/course.manual.pdf</target>
+<categoryname>interface file</categoryname>
+<description>
+The PDF Course Manual
+</description>
+<status>works/unverified</status>
+</file>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/gif/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/gif/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Gif files for the help system
+</description>
+<filenames>
+Authoring_Dynamic_Plot_Axis_Labels.gif;
+Authoring_Dynamic_Plot_Axis_Tics_border.gif;
+Authoring_Dynamic_Plot_Axis_Tics_minor.gif;
+Authoring_Dynamic_Plot_Axis_Tics_nomirror.gif;
+Authoring_Dynamic_Plot_Axis_Tics_x_axis.gif;
+Authoring_Dynamic_Plot_Title_X_Y_Label.gif;
+Dynamic_Replication_Change.gif;
+Dynamic_Replication_Request.gif;
+Load_Balance_Example.gif;
+LONCAPA_Network_Diagram2.gif;
+LONCAPA_Network_Diagram.gif;
+Map_Example.gif;
+Resource_Assembly.gif;
+authorRemote.gif;
+constructionSpace.gif;
+constructionSpaceForPublishing.gif;
+creatingANewCourse.gif;
+creatingNewProblemResource.gif;
+dynamic_piecewise.gif;
+dynamic_piecewise2.gif;
+dynamic_plot.gif;
+dynamic_plot2.gif;
+formulaResponse.gif;
+login.gif;
+lonhelpheader.gif;
+mainCourseDocuments.gif;
+mapAdvancedEditorNew.gif;
+mapClickedStart.gif;
+mapEditFirstClick.gif;
+mapEditInitial.gif;
+mapEditingButton.gif;
+mapEditorDirectoryBrowser.gif;
+mapEditorResourceChosen.gif;
+mapEditorSelection.gif;
+mapInsertResource.gif;
+mapNewResource.gif;
+mapSecondWindowSecondResource.gif;
+mapSimpleEditor.gif;
+mapStraightened.gif;
+mapTwoResources.gif;
+numericalResponse1.gif;
+numericalResponseEditor.gif;
+numericalResponseSlopeProblem.gif;
+numericalResponseVarInText.gif;
+optionResponseEditing.gif;
+optionResponseProblem.gif;
+publishMetadata.gif;
+radioResponse2.gif;
+radioResponseHint.gif;
+smallHelp.gif;
+spreadsheet_hierarchy.gif;
+stringResponseEditor.gif;
+studentInterface.gif
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/eps/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/eps/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+EPS files for the help system
+</description>
+<filenames>
+Authoring_Dynamic_Plot_Axis_Labels.eps;
+Authoring_Dynamic_Plot_Axis_Tics_border.eps;
+Authoring_Dynamic_Plot_Axis_Tics_minor.eps;
+Authoring_Dynamic_Plot_Axis_Tics_nomirror.eps;
+Authoring_Dynamic_Plot_Axis_Tics_x_axis.eps;
+Authoring_Dynamic_Plot_Title_X_Y_Label.eps;
+Dynamic_Replication_Change.eps;
+Dynamic_Replication_Request.eps;
+Load_Balance_Example.eps;
+LONCAPA_Network_Diagram2.eps;
+LONCAPA_Network_Diagram.eps;
+Map_Example.eps;
+Resource_Assembly.eps;
+authorRemote.eps;
+constructionSpace.eps;
+constructionSpaceForPublishing.eps;
+creatingANewCourse.eps;
+creatingNewProblemResource.eps;
+dynamic_piecewise.eps;
+dynamic_piecewise2.eps;
+dynamic_plot.eps;
+dynamic_plot2.eps;
+formulaResponse.eps;
+lonhelpheader.eps;
+login.eps;
+mainCourseDocuments.eps;
+mapAdvancedEditorNew.eps;
+mapClickedStart.eps;
+mapEditFirstClick.eps;
+mapEditInitial.eps;
+mapEditingButton.eps;
+mapEditorDirectoryBrowser.eps;
+mapEditorResourceChosen.eps;
+mapEditorSelection.eps;
+mapInsertResource.eps;
+mapNewResource.eps;
+mapSecondWindowSecondResource.eps;
+mapSimpleEditor.eps;
+mapStraightened.eps;
+mapTwoResources.eps;
+numericalResponse1.eps;
+numericalResponseEditor.eps;
+numericalResponseSlopeProblem.eps;
+numericalResponseVarInText.eps;
+optionResponseEditing.eps;
+optionResponseProblem.eps;
+publishMetadata.eps;
+radioResponse2.eps;
+radioResponseHint.eps;
+smallHelp.eps;
+spreadsheet_hierarchy.eps;
+stringResponseEditor.eps;
+studentInterface.eps
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/tex/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/tex/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Tex files for the help system
+</description>
+<filenames>
+About_Authors_Manual.tex;
+About_Bombs.tex;
+About_Communication.tex;
+About_Developers_Manual.tex;
+About_Numerical_and_Formula_Response.tex;
+all_functions_table.tex;
+Ambiguous_Reference.tex;
+Analysis_Analyze_as.tex;
+Analysis_Analyze_Over.tex;
+Analysis_num_plots.tex;
+Analyze_Problem.tex;
+Annotation.tex;
+Authentication.tex;
+Authoring_Adding_Pictures.tex;
+Authoring_DataResponse.tex;
+Authoring_Dynamic_Plot_Axes.tex;
+Authoring_Dynamic_Plot_Curve_Data.tex;
+Authoring_Dynamic_Plot_Curve_Function.tex;
+Authoring_Dynamic_Plot_Curve.tex;
+Authoring_Dynamic_Plot_Gnuplot.tex;
+Authoring_Dynamic_Plot_Key.tex;
+Authoring_Dynamic_Plot_Label.tex;
+Authoring_Dynamic_Plot_Linestyle.tex;
+Authoring_Dynamic_Plot.tex;
+Authoring_Dynamic_Plot_Tics.tex;
+Authoring_Dynamic_Plot_Title_X_Y_Label.tex;
+Authoring_ExternalResponse.tex;
+Authoring_Foil_Structure_Tags.tex;
+Authoring_Hint_Tags.tex;
+Authoring_HTML_vs_Tex.tex;
+Authoring_ImageResponse.tex;
+Authoring_Input_Tags.tex;
+Authoring_Internal_Tags.tex;
+Authoring_M_Tag.tex;
+Authoring_NumericalResponse.tex;
+Authoring_OptionResponse.tex;
+Authoring_Output_Tags.tex;
+Authoring_Pictures_EPS.tex;
+Authoring_Piecewise_Plot.tex;
+Authoring_RadiobuttonResponse.tex;
+Authoring_Response_Attributes.tex;
+Authoring_Responseparam_Parameter.tex;
+Authoring_Response_Tag_Intro.tex;
+Authoring_Scripting_Tags.tex;
+Authoring_Structure_Tags.tex;
+Authoring_XML_Intro.tex;
+Author_LON-CAPA_Introduction.tex;
+Author_Manual_Title_Page.tex;
+Author_Numerical_and_Formula.tex;
+Author_Remote_Control.tex;
+Bookmarks.tex;
+Bugzilla.tex;
+Caching.tex;
+Calendar_Add_Announcement.tex;
+Calendar_Remove_Announcement.tex;
+Calling_Functions.tex;
+CAPA_LON-CAPA_function_diffs.tex;
+Cascading_Parameters.tex;
+Change_Colors.tex;
+Change_Password.tex;
+Chart_Description.tex;
+Chart_Output_Data.tex;
+Chart_Output_Formats.tex;
+Chatting.tex;
+Coauthor.tex;
+Construction_Space_Overview.tex;
+Course_Add_Other.tex;
+Course_Add_Student.tex;
+Course_Broadcast_Message.tex;
+Course_Change_Privileges.tex;
+Course_Chart_To_Excel.tex;
+Course_Chat.tex;
+Course_Convert_To_CSV.tex;
+Course_Create_Class_List.tex;
+Course_Critical_Message.tex;
+Course_Deleting.tex;
+Course_Disable_Discussion.tex;
+Course_Discussion_Board.tex;
+Course_Drop_Student.tex;
+Course_Edit_Content.tex;
+Course_Editing_Custom_Roles.tex;
+Course_Extending_Due_Dates.tex;
+Course_Face_To_Face_Records.tex;
+Course_Feedback_Addresses.tex;
+Course_Homework_Performance_Overview.tex;
+Course_Manually_Grade_Problem.tex;
+Course_Manual_Title_Page.tex;
+Course_Maximum_Collaborators.tex;
+Course_Message_Access.tex;
+Course_Modify_Student_Data.tex;
+Course_Parameter_Levels.tex;
+Course_Problem_Weight.tex;
+Course_Set_Start_End_Date.tex;
+Course_Setting_Parameters.tex;
+Course_Student_Grade_Override.tex;
+Course_Student_Work.tex;
+Course_Toplevel_Seq.tex;
+Course_User_Evaluation.tex;
+Course_User_Parameter.tex;
+Course_View_Class_List.tex;
+Create_Course.tex;
+Creating_A_Course_Intro.tex;
+Creating_New_Content_Pages.tex;
+Creating_Online_Problems.tex;
+Creating_Radio_Response_Problems.tex;
+Developer_Manual_Title_Page.tex;
+Developer_Tutorial.tex;
+Docs_About_Bulletin_Board.tex;
+Docs_About_My_Personal_Info.tex;
+Docs_About_Simple_Page.tex;
+Docs_About_Syllabus.tex;
+Docs_Adding_Course_Doc.tex;
+Docs_Adding_External_Resource.tex;
+Docs_Adding_Folders.tex;
+Docs_Adding_Syllabus.tex;
+Docs_Alternatives.tex;
+Docs_Creating_From_Template.tex;
+Docs_Editing_Templated_Pages.tex;
+Docs_Importing_LON-CAPA_Resource.tex;
+Docs_Load_Map.tex;
+Docs_Main_Course_Documents.tex;
+Docs_Navigate_Content.tex;
+Docs_Overview.tex;
+Docs_Score_Upload_Form.tex;
+Docs_Supplemental.tex;
+Docs_Uploading_From_Harddrive.tex;
+Finding_Resources.tex;
+Foils.tex;
+Formula_Response_Adv_Intro.tex;
+Formula_Response_Example.tex;
+Formula_Response_Limitations.tex;
+Formula_Response_Problems.tex;
+Formula_Response_Sampling.tex;
+Formula_Tolerance.tex;
+General_Intro.tex;
+Generation.tex;
+GradingOptions.tex;
+Greek_Symbols.tex;
+Guts_Apache_Env.tex;
+Guts_Apache_Modules.tex;
+Guts_Apache.tex;
+Guts_Authentication.tex;
+Guts_Authoring.tex;
+Guts_Coding_Guidelines.tex;
+Guts_Course_Dir.tex;
+Guts_User_Dir.tex;
+How_To_Edit_Existing_Content_Pages.tex;
+Latex_Footer.tex;
+Latex_Header.tex;
+Leaving_Feedback.tex;
+Login_To_LON-CAPA.tex;
+Metadata_Description.tex;
+Navmap_Host_Down.tex;
+Numerical_Response_Advanced_Example.tex;
+Numerical_Response_Format.tex;
+Numerical_Response_Introduction.tex;
+Numerical_Response_Intro.tex;
+Numerical_Response_Parts_A.tex;
+Numerical_Response_Parts_B.tex;
+Numerical_Response_Problems.tex;
+Numerical_Response_Randomization.tex;
+Numerical_Response_Simple_Example.tex;
+Numerical_Response_Tutorial_A.tex;
+Numerical_Response_Units.tex;
+Option_Response_Concept_Group_Example.tex;
+Option_Response_Matching_Example.tex;
+Option_Response_Problem_Creation.tex;
+Option_Response_Problem_Figure.tex;
+Option_Response_Problem_Parts.tex;
+Option_Response_Problems.tex;
+Option_Response_Simple.tex;
+Other_Symbols.tex;
+Part_Tag_Edit_Help.tex;
+Personal_Info_Page.tex;
+Physical_Units.tex;
+Prefs_Forwarding.tex;
+Prefs_Screen_Name_Nickname.tex;
+Print_Resource.tex;
+Problem_Editor_Testing_Area.tex;
+Problem_Editor_XML_Index.tex;
+Problem_LON-CAPA_Functions.tex;
+Problem_Types.tex;
+Publishing_A_Resource.tex;
+Publishing_Author_Tutorial_Segue.tex;
+Publishing_Copyright.tex;
+Publishing_Intro.tex;
+Publishing_Keywords.tex;
+Quick_Grades_Possibly_Correct.tex;
+Radio_Response_Problems.tex;
+Radio_Response_Randomization.tex;
+Ranking_Problems.tex;
+Receipt.tex;
+Resource_Discussion.tex;
+Resource_Types.tex;
+Roles_About.tex;
+Script_Functions.tex;
+Scripting_Help.tex;
+Script_Tutorial_Intro.tex;
+Script_Variables.tex;
+Search_Advanced.tex;
+Search_Basic.tex;
+Searching.tex;
+Sending_Email.tex;
+Sequence_Advanced_Editor_Creation.tex;
+Sequence_Definition.tex;
+Sequence_Editor_Selection.tex;
+Sequence_Page_Maps.tex;
+Sequence_Simple_Editor_Creation.tex;
+Sequence_Top-Level.tex;
+Significant_Figures.tex;
+Spreadsheet_About.tex;
+Spreadsheet_Calculation.tex;
+Spreadsheet_Calculation_Time.tex;
+Spreadsheet_Cell_Editing.tex;
+Spreadsheet_Editing.tex;
+Spreadsheet_Export_Row.tex;
+Spreadsheet_Files.tex;
+Spreadsheet_Functions.tex;
+Spreadsheet_Hierarchy.tex;
+Spreadsheet_HowTo_Assessments.tex;
+Spreadsheet_HowTo.tex;
+Spreadsheet_Layout.tex;
+Spreadsheet_Levels.tex;
+Spreadsheet_Max_Depth_Exceeded.tex;
+Spreadsheet_Parms.tex;
+Spreadsheet_Problem_Weight.tex;
+Spreadsheet_Referencing_Cells.tex;
+Spreadsheet_Referencing_Parameters.tex;
+Spreadsheet_Row_Numbers.tex;
+Spreadsheet_Student_View.tex;
+Spreadsheet_Student_Visible.tex;
+Spreadsheet_Template_Row.tex;
+Spreadsheet_Ternary_Operator.tex;
+Spreadsheet_Tries.tex;
+Statistics_Overall_Key.tex;
+String_Response_Problem_Creation.tex;
+String_Response_Problems.tex;
+Syllabus_ExtLink.tex;
+Syllabus_URLs.tex;
+Tolerance.tex;
+Uploaded_Templates_PublicView.tex;
+Uploaded_Templates_TextBoxes.tex;
+Variable_Naming_Conventions.tex;
+Variables_in_Scripts.tex;
+Variables_in_the_Answer_Block.tex;
+Variables_in_the_Text_Block.tex;
+Variable_Tutorial_A.tex;
+What_Is_LON-CAPA.tex;
+Why_LON-CAPA.tex;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/tex/ru/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/tex/ru/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Russian Tex files for the help system
+</description>
+<filenames>
+About_Authors_Manual.tex;
+About_Communication.tex;
+About_Developers_Manual.tex;
+About_Numerical_and_Formula_Response.tex;
+CAPA_LON-CAPA_function_diffs.tex;
+Course_Maximum_Collaborators.tex;
+Course_Set_Start_End_Date.tex;
+Creating_A_Course_Intro.tex;
+Other_Symbols.tex;
+Physical_Units.tex;
+Print_Resource.tex;
+Authoring_Adding_Pictures.tex;
+</filenames>
+</fileglob>
+<file>
+<source>loncom/html/adm/help/fragmentLabels.gdbm</source>
+<target dist='default'>home/httpd/html/adm/help/fragmentLabels.gdbm</target>
+<categoryname>interface file</categoryname>
+<description>
+A gdbm file containing a label->tex file hash.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonstatistics.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonstatistics.pm</target>
 <categoryname>handler</categoryname>
@@ -1212,6 +2602,83 @@ Handler to show statistics on solving LO
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/statistics/lonstathelpers.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstathelpers.pm</target>
+<categoryname>module</categoryname>
+<description>
+Utility module for statistics and data mining.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonproblemstatistics.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonproblemstatistics.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the Problem Statistics web pages.
+</description>
+</file>
+<file>
+<source>loncom/interface/statistics/lonstudentsubmissions.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstudentsubmissions.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+Generates excel file containing student submissions and correct answers.
+</description>
+</file>
+<file>
+<source>loncom/interface/statistics/loncorrectproblemplot.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncorrectproblemplot.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the correct problems plot web pages.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonpercentage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpercentage.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the Percentage graph web pages.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonproblemanalysis.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonproblemanalysis.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+This module provides detailed analysis and raw data for submissions of various problem types.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonsubmissiontimeanalysis.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsubmissiontimeanalysis.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+This module produces plots of the times of students attempts on an assessment.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonstudentassessment.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstudentassessment.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the Student Assessment/Chart web pages.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/londiff.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londiff.pm</target>
 <categoryname>handler</categoryname>
@@ -1221,6 +2688,15 @@ Handler to show difference between two f
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/publisher/lonrights.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrights.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to show and edit custom distribution rights
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/lonupload.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonupload.pm</target>
 <categoryname>handler</categoryname>
@@ -1244,14 +2720,15 @@ loncom/build/pod2man.sh ../publisher/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonupload.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonupload.html
+<source>doc/lib/perl/Apache/lonupload.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonupload.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonupload.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../publisher/lonupload.pm &gt; \
-../../doc/api/Apache/lonupload.html &amp;&amp; echo 'pod2html lonupload.pm'
+../../doc/lib/perl/Apache/lonupload.html &amp;&amp; \
+echo 'pod2html lonupload.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1281,7 +2758,8 @@ Handler to evaluate externally graded re
 <target dist='default'>home/httpd/lib/perl/Apache/loncapagrade.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Handler to evaluate externally graded responses.
+Holds results and defines
+tag handlers needed by externalresponse.pm
 </description>
 <status>works/unverified</status>
 </file>
@@ -1294,6 +2772,14 @@ Handler to publish directories.
 </description>
 </file>
 <file>
+<source>loncom/publisher/lonunauthorized.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonunauthorized.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to explain failed contruction space access.
+</description>
+</file>
+<file>
 <source>doc/man/Apache__lonpubdir.3</source>
 <target dist='default'>usr/man/man3/Apache::lonpubdir.3</target>
 <categoryname>doc</categoryname>
@@ -1308,14 +2794,15 @@ loncom/build/pod2man.sh ../publisher/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonpubdir.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonpubdir.html
+<source>doc/lib/perl/Apache/lonpubdir.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonpubdir.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonpubdir.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../publisher/lonpubdir.pm &gt; \
-../../doc/api/Apache/lonpubdir.html &amp;&amp; echo 'pod2html lonpubdir.pm'
+../../doc/lib/perl/Apache/lonpubdir.html &amp;&amp; \
+echo 'pod2html lonpubdir.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1346,14 +2833,16 @@ loncom/build/pod2man.sh ../publisher/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonretrieve.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonretrieve.html
+<source>doc/lib/perl/Apache/lonretrieve.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonretrieve.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonretrieve.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../publisher/lonretrieve.pm &gt; \
-../../doc/api/Apache/lonretrieve.html &amp;&amp; echo 'pod2html lonretrieve.pm'
+../../doc/lib/perl/Apache/lonretrieve.html &amp;&amp; \
+echo 'pod2html lonretrieve.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1383,12 +2872,14 @@ echo 'manifying edit.pm'
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/edit.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/edit.html</target>
+<source>doc/lib/perl/Apache/edit.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/edit.html
+</target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for edit.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../homework/edit.pm &gt; ../../doc/api/Apache/edit.html \
+loncom/build/pod2html.sh ../homework/edit.pm &gt; \
+../../doc/lib/perl/Apache/edit.html \
 &amp;&amp; echo 'pod2html edit.pm'
 </build>
 <status>works/unverified</status>
@@ -1451,11 +2942,56 @@ them roles.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonchart.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonchart.pm</target>
+<source>loncom/interface/lonhtmlcommon.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhtmlcommon.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains a set of functions that generate html controls and data layouts
+</description>
+</file>
+<file>
+<source>loncom/localize/lonlocal.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonlocal.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains the &mt access function to Locale::Maketext
+</description>
+</file>
+<file>
+<source>loncom/localize/localize.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/localize.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Localization class for Locale::Maketext
+</description>
+</file>
+<fileglob>
+<glob>*.pm</glob>
+<sourcedir>loncom/localize/localize/</sourcedir>
+<targetdir dist='default'>
+home/httpd/lib/perl/Apache/localize/</targetdir>
+<categoryname>static conf</categoryname>
+<description>
+Translation files.
+</description>
+<filenames>
+de.pm;
+pt.pm;
+fr.pm;
+ja.pm;
+tr.pm;
+ru.pm;
+fa.pm;
+ar.pm;
+es.pm;
+</filenames>
+</fileglob>
+<file>
+<source>loncom/interface/loncoursedata.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursedata.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Produces simple LectureOnline-like student assessment performance chart
+Common functions for handling student course data (download and process)
 </description>
 </file>
 <file>
@@ -1483,14 +3019,15 @@ loncom/build/pod2man.sh ../interface/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/loncommon.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/loncommon.html
+<source>doc/lib/perl/Apache/loncommon.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/loncommon.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for loncommon.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../interface/loncommon.pm &gt; \
-../../doc/api/Apache/loncommon.html &amp;&amp; echo 'pod2html loncommon.pm'
+../../doc/lib/perl/Apache/loncommon.html &amp;&amp; \
+echo 'pod2html loncommon.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1529,6 +3066,43 @@ assignment.
 </description>
 <status>works/unverified</status>
 </file>
+
+<file>
+  <source>loncom/homework/chemresponse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/chemresponse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handle the tags organicresponse/structure and reationresponse
+  </description>
+  <status>works/unverified</status>
+</file>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jme/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jme/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JME files, for editing organic structures
+  </description>
+  <filenames>
+JME.jar;
+jme.gif;
+jme_help.html;
+nitro.gif;
+smiles.gif
+  </filenames>
+</fileglob>
+
+<file>
+  <source>loncom/homework/convertjme.pl</source>
+  <target dist='default'>home/httpd/cgi-bin/convertjme.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Dynamically converts JME strings into either a png or ps file.
+  </description>
+</file>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -1607,6 +3181,73 @@ Handles navigational maps.
 <status>works/unverified</status>
 </file>
 <file>
+<source>doc/man/Apache__lonnavmaps.3</source>
+<target dist='default'>usr/man/man3/Apache::lonnavmaps.3</target>
+<categoryname>doc</categoryname>
+<description>man page for lonnavmaps.pm</description>
+<build trigger='always run'>
+loncom/build/pod2man.sh ../../loncom/interface/lonnavmaps.pm &gt; \
+../../doc/man/Apache__lonnavmaps.3 &amp;&amp; echo 'manifying lonnavmaps.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/interface/lonnavmaps.pm
+</dependencies>
+</file>
+<file>
+<source>doc/lib/perl/Apache/lonnavmaps.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonnavmaps.html
+</target>
+<categoryname>doc</categoryname>
+<description>POD-derived page for lonnavmaps.pm</description>
+<build trigger='always run'>
+loncom/build/pod2html.sh ../../loncom/interface/lonnavmaps.pm &gt; \
+../../doc/lib/perl/Apache/lonnavmaps.html &amp;&amp; \
+echo 'pod2html lonnavmaps.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/interface/lonnavmaps.pm
+</dependencies>
+</file>
+<file>
+<source>loncom/interface/lonhelper.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhelper.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Helper framework.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/helper/parameter.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/parameter.helper</target>
+<categoryname>handler</categoryname>
+<description>
+Parameter setting helper.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/helper/course.initialization.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/course.initialization.helper</target>
+<categoryname>handler</categoryname>
+<description>
+Course initialization helper.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonquickgrades.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonquickgrades.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Student quick grades interface.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonpreferences.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpreferences.pm</target>
 <categoryname>handler</categoryname>
@@ -1626,6 +3267,14 @@ Handles the production of printable file
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/metadata_database/LONCAPA/lonmetadata.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonmetadata.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a common interface to LON-CAPA metadata.
+  </description>
+</file>
+<file>
 <source>loncom/interface/lonsearchcat.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsearchcat.pm</target>
 <categoryname>handler</categoryname>
@@ -1635,6 +3284,15 @@ Handles a searchable catalogue.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonmysql.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonmysql.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Provides utility functions for creating and accessing mysql database tables.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonsearchcat.3</source>
 <target dist='default'>usr/man/man3/Apache::lonsearchcat.3</target>
 <categoryname>doc</categoryname>
@@ -1649,14 +3307,16 @@ loncom/build/pod2man.sh ../interface/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonsearchcat.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonsearchcat.html
+<source>doc/lib/perl/Apache/lonsearchcat.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonsearchcat.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonsearchcat.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../interface/lonsearchcat.pm &gt; \
-../../doc/api/Apache/lonsearchcat.html &amp;&amp; echo 'pod2html lonsearchcat.pm'
+../../doc/lib/perl/Apache/lonsearchcat.html &amp;&amp; \
+echo 'pod2html lonsearchcat.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1664,6 +3324,15 @@ loncom/build/pod2html.sh ../interface/lo
 </dependencies>
 </file>
 <file>
+<source>loncom/interface/lonmanagekeys.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonmanagekeys.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows users with "mky" privileges to generate and manage course access keys.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/londropadd.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londropadd.pm</target>
 <categoryname>handler</categoryname>
@@ -1700,13 +3369,49 @@ problems and assignments.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonspreadsheet.pm</source>
+<source>loncom/interface/spreadsheet/lonspreadsheet.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonspreadsheet.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Spreadsheets are completely web-based.
-They exist on the level of a whole course, a student, and individual
-assessments.
+The top level interface for the display and editing of spreadsheets.  There
+are three levels of spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/Spreadsheet.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/Spreadsheet.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the parent object of each spreadsheet type (classcalc, studentcalc,
+assesscalc).
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/classcalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/classcalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the course level spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/studentcalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/studentcalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the student level spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/assesscalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/assesscalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the assessment level spreadsheet.
 </description>
 <status>works/unverified</status>
 </file>
@@ -1734,14 +3439,15 @@ loncom/build/pod2man.sh ../interface/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonparmset.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonparmset.html
+<source>doc/lib/perl/Apache/lonparmset.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonparmset.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonparmset.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../interface/lonparmset.pm &gt; \
-../../doc/api/Apache/lonparmset.html &amp;&amp; echo 'pod2html lonparmset.pm'
+../../doc/lib/perl/Apache/lonparmset.html &amp;&amp; \
+echo 'pod2html lonparmset.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1782,14 +3488,16 @@ loncom/build/pod2man.sh ../publisher/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonpublisher.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonpublisher.html
+<source>doc/lib/perl/Apache/lonpublisher.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonpublisher.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonpublisher.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../publisher/lonpublisher.pm &gt; \
-../../doc/api/Apache/lonpublisher.html &amp;&amp; echo 'pod2html lonpublisher.pm'
+../../doc/lib/perl/Apache/lonpublisher.html &amp;&amp; \
+echo 'pod2html lonpublisher.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1806,6 +3514,15 @@ Has routines which control the remote co
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonremote.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonremote.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to lauch and collapse the remote control.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>rat/lonpageflip.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpageflip.pm</target>
 <categoryname>handler</categoryname>
@@ -1831,6 +3548,15 @@ Homework remote control.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/html/res/adm/pages/chatroom.html</source>
+<target dist='default'>home/httpd/html/res/adm/pages/chatroom.html</target>
+<categoryname>handler</categoryname>
+<description>
+Establishes frameset for chatroom
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/html/res/adm/pages/annotator/admannotations.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/admannotations.pm</target>
 <categoryname>handler</categoryname>
@@ -1884,14 +3610,14 @@ loncom/build/pod2man.sh ../../rat/lonpag
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonpage.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonpage.html
+<source>doc/lib/perl/Apache/lonpage.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonpage.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonnet.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../../rat/lonpage.pm &gt; \
-../../doc/api/Apache/lonpage.html &amp;&amp; echo 'pod2html lonpage.pm'
+../../doc/lib/perl/Apache/lonpage.html &amp;&amp; echo 'pod2html lonpage.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1903,7 +3629,7 @@ loncom/build/pod2html.sh ../../rat/lonpa
 <target dist='default'>home/httpd/lib/perl/Apache/lonuserstate.pm</target>
 <categoryname>handler</categoryname>
 <description>
-compile course into binary data structure (in loncom/rat)
+compile course into binary data structure
 </description>
 <status>works/unverified</status>
 </file>
@@ -1922,14 +3648,16 @@ loncom/build/pod2man.sh ../../rat/lonuse
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonuserstate.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonuserstate.html
+<source>doc/lib/perl/Apache/lonuserstate.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonuserstate.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonuserstate.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../../rat/lonuserstate.pm &gt; \
-../../doc/api/Apache/lonuserstate.html &amp;&amp; echo 'pod2html lonuserstate.pm'
+../../doc/lib/perl/Apache/lonuserstate.html &amp;&amp; \
+echo 'pod2html lonuserstate.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1941,7 +3669,7 @@ loncom/build/pod2html.sh ../../rat/lonus
 <target dist='default'>home/httpd/lib/perl/Apache/lontex.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Handler for tex files (somewhere in modules)
+Handler for tex files
 </description>
 <status>works/unverified</status>
 </file>
@@ -2010,6 +3738,55 @@ implements &lt;script&gt;, &lt;scriptlib
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/languagetags.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/languagetags.pm</target>
+<categoryname>handler</categoryname>
+<description>
+implements &lt;mt&gt;
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/homework/randomlylabel.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/randomlylabel.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for compositing images, and text together.
+</description>
+</file>
+<file>
+<source>loncom/homework/drawimage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/drawimage.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for programtically defining an image
+</description>
+</file>
+<file>
+<source>loncom/homework/imagechoice.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imagechoice.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for picking out locations on an image.
+</description>
+</file>
+<file>
+<source>loncom/homework/rankresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/rankresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for rankresponse
+</description>
+</file>
+<file>
+<source>loncom/homework/matchresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/matchresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for matchresponse
+</description>
+</file>
+<file>
 <source>loncom/homework/randomlabel.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/randomlabel.pm</target>
 <categoryname>handler</categoryname>
@@ -2077,13 +3854,24 @@ a way that does not threaten the operati
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/auth/localauth.pm</source>
-<target dist='default'>home/httpd/lib/perl/localauth.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Local authentication mechanism (meant to be customized).
-</description>
-<status>works/unverified</status>
+  <source>loncom/auth/localauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localauth-std.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Local authentication mechanism.  The target file is meant as a template
+for a localauth.pm file.  The target file with the -std suffix is not
+used directly by any software program; it is just a template file.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/localauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localauth.pm</target>
+  <categoryname>conf</categoryname>
+  <description>
+Local authentication mechanism.  
+  </description>
+  <status>works/unverified</status>
 </file>
 <file>
 <source>loncom/auth/lonacc.pm</source>
@@ -2112,13 +3900,14 @@ loncom/build/pod2man.sh ../auth/lonacc.p
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonacc.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonacc.html</target>
+<source>doc/lib/perl/Apache/lonacc.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonacc.html</target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonacc.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../auth/lonacc.pm &gt; \
-../../doc/api/Apache/lonacc.html &amp;&amp; echo 'pod2html lonacc.pm'
+../../doc/lib/perl/Apache/lonacc.html &amp;&amp; echo 'pod2html lonacc.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2135,6 +3924,43 @@ access handler for file transfers
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/lontokacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontokacc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+handler for inter-server transfer of token accessed files, includes
+cleanup handler to remove file when successfully done
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/auth/lonuploadedacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonuploadedacc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+access handler for user uploaded files
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/lontrans.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontrans.pm</target>
+<categoryname>handler</categoryname>
+<description>
+URI to filename translation
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/lonenc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonenc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Encryption and decryption of URIs
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonracc.3</source>
 <target dist='default'>usr/man/man3/Apache::lonracc.3</target>
 <categoryname>doc</categoryname>
@@ -2149,14 +3975,14 @@ loncom/build/pod2man.sh ../auth/lonracc.
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonracc.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonracc.html
+<source>doc/lib/perl/Apache/lonracc.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonracc.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonracc.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../auth/lonracc.pm &gt; \
-../../doc/api/Apache/lonracc.html &amp;&amp; echo 'pod2html lonracc.pm'
+../../doc/lib/perl/Apache/lonracc.html &amp;&amp; echo 'pod2html lonracc.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2196,14 +4022,14 @@ loncom/build/pod2man.sh ../auth/loncacc.
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/loncacc.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/loncacc.html
+<source>doc/lib/perl/Apache/loncacc.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/loncacc.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for loncacc.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../auth/loncacc.pm &gt; \
-../../doc/api/Apache/loncacc.html &amp;&amp; echo 'pod2html loncacc.pm'
+../../doc/lib/perl/Apache/loncacc.html &amp;&amp; echo 'pod2html loncacc.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2225,6 +4051,13 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/londatecheck.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/londatecheck.pm</target>
+<categoryname>handler</categoryname>
+<description>Checks contentopen/close settings disable subsequent PerlHandlers if not open</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonlogout.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonlogout.pm</target>
 <categoryname>handler</categoryname>
@@ -2238,6 +4071,12 @@ loncom/build/pod2html.sh ../auth/loncacc
 <description>replication</description>
 </file>
 <file>
+<source>loncom/lonnet/perl/lonuploadrep.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonuploadrep.pm</target>
+<categoryname>handler</categoryname>
+<description>copying of uploaded files</description>
+</file>
+<file>
 <source>loncom/auth/lonroles.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonroles.pm</target>
 <categoryname>handler</categoryname>
@@ -2266,14 +4105,14 @@ loncom/build/pod2man.sh ../auth/lonroles
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonroles.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonroles.html
+<source>doc/lib/perl/Apache/lonroles.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonroles.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonroles.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../auth/lonroles.pm &gt; \
-../../doc/api/Apache/lonroles.html &amp;&amp; echo 'pod2html lonroles.pm'
+../../doc/lib/perl/Apache/lonroles.html &amp;&amp; echo 'pod2html lonroles.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2304,14 +4143,15 @@ loncom/build/pod2man.sh ../interface/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonindexer.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonindexer.html
+<source>doc/lib/perl/Apache/lonindexer.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonindexer.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonindexer.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../interface/lonindexer.pm &gt; \
-../../doc/api/Apache/lonindexer.html &amp;&amp; echo 'pod2html lonindexer.pm'
+../../doc/lib/perl/Apache/lonindexer.html &amp;&amp; \
+echo 'pod2html lonindexer.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2361,13 +4201,14 @@ loncom/build/pod2man.sh ../lonnet/perl/l
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonnet.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonnet.html</target>
+<source>doc/lib/perl/Apache/lonnet.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonnet.html
+</target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonnet.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../lonnet/perl/lonnet.pm &gt; \
-../../doc/api/Apache/lonnet.html &amp;&amp; echo 'pod2html lonnet.pm'
+../../doc/lib/perl/Apache/lonnet.html &amp;&amp; echo 'pod2html lonnet.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2380,6 +4221,18 @@ loncom/build/pod2html.sh ../lonnet/perl/
 <categoryname>interface file</categoryname>
 <description>bumps to login</description>
 </file>
+<file>
+<source>loncom/html/index.html</source>
+<target dist='default'>home/httpd/html/origindex.html</target>
+<categoryname>interface file</categoryname>
+<description>bumps to login, backup for takeonline</description>
+</file>
+<file>
+<source>loncom/html/favicon.ico</source>
+<target dist='default'>home/httpd/html/favicon.ico</target>
+<categoryname>interface file</categoryname>
+<description>Bookmark and tab icon</description>
+</file>
 <link>
 <linkto>etc/mime.types</linkto>
 <target dist='default'>etc/httpd/conf/mime.types</target>
@@ -2443,6 +4296,22 @@ javascript
 </description>
 </file>
 <file>
+<source>rat/client/extpickcode.html</source>
+<target dist='default'>home/httpd/html/adm/rat/extpickcode.html</target>
+<categoryname>interface file</categoryname>
+<description>
+javascript
+</description>
+</file>
+<file>
+<source>rat/client/extpickframe.html</source>
+<target dist='default'>home/httpd/html/adm/rat/extpickframe.html</target>
+<categoryname>interface file</categoryname>
+<description>
+javascript
+</description>
+</file>
+<file>
 <source>rat/client/map.html</source>
 <target dist='default'>home/httpd/html/adm/rat/map.html</target>
 <categoryname>interface file</categoryname>
@@ -2458,6 +4327,14 @@ bumper
 A blank page with very minimal HTML structural elements.
 </description>
 </file>
+<file>
+<source>rat/client/loading.html</source>
+<target dist='default'>home/httpd/html/adm/rat/loading.html</target>
+<categoryname>interface file</categoryname>
+<description>
+A blank page which calls drawwindow in its opener after being loaded.
+</description>
+</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>rat/images/</sourcedir>
@@ -2601,18 +4478,32 @@ lonlogo_broken.mov
 <targetdir dist='default'>home/httpd/html/adm/lonIcons/</targetdir>
 <categoryname>graphic file</categoryname>
 <description>
-logos
+logos and general widget icons
 </description>
 <filenames>
 SMETE_white.gif;
 aboutlon.gif;
+aboutlon_pt.gif;
+aboutlon_de.gif;
 accessbutton.gif;
+accessbutton_pt.gif;
+accessbutton_de.gif;
+angry.gif;
 arrow_up.gif;
+baeh.gif;
+bigsmile.gif;
+branch.gif;
 cab.gif;
 cab_big.gif;
 capapanel.gif;
+check.gif;
 class.gif;
 class_big.gif;
+coolindiff.gif;
+coolsmile.gif;
+cry.gif;
+doc.gif;
+doc_big.gif;
 dvi.gif;
 dvi_big.gif;
 eps.gif;
@@ -2629,17 +4520,22 @@ folder_pointer_closed.gif;
 folder_pointer_opened.gif;
 form.gif;
 form_big.gif;
+frowny.gif;
 gif.gif;
 gif_big.gif;
 header.gif;
+hrrm.gif;
 htm.gif;
 html.gif;
 html_big.gif;
+huh.gif;
 jar.gif;
 jar_big.gif;
 jpg.gif;
 jpg_big.gif;
 latex.gif;
+library.gif;
+lipsrsealed.gif;
 lite.gif;
 liteani.gif;
 litetext.gif;
@@ -2653,22 +4549,41 @@ lonlogo.gif;
 lonlogos.gif;
 lowerleft.gif;
 lowerright.gif;
+mailbkgrd.gif;
+mailto.gif;
+minilogo.gif;
 meta.gif;
 meta_big.gif;
 mov.gif;
 mov_big.gif;
 move_up.gif;
 move_down.gif;
+navmap.correct.gif;
+navmap.ellipsis.gif;
+navmap.open.gif;
+navmap.page.open.gif;
+navmap.page.closed.gif;
+navmap.page.open.nomanip.gif;
+navmap.page.closed.nomanip.gif;
+navmap.wrong.gif;
+navmap.folder.open.gif;
+navmap.folder.closed.gif;
+navmap.folder.open.nomanip.gif;
+navmap.folder.closed.nomanip.gif;
+neutral.gif;
 page.gif;
 page_big.gif;
 pdf.gif;
 pdf_big.gif;
 png.gif;
 png_big.gif;
+ppt.gif;
+ppt_big.gif;
 problem.gif;
 problem_big.gif;
 ps.gif;
 ps_big.gif;
+rolleyes.gif;
 quill.gif;
 quiz.gif;
 quiz_big.gif;
@@ -2677,6 +4592,8 @@ sequence.gif;
 sequence_big.gif;
 server.gif;
 server_big.gif;
+shocked.gif;
+smiley.gif;
 srvbad.gif;
 srvempty.gif;
 srvgood.gif;
@@ -2686,6 +4603,7 @@ survey.gif;
 survey_big.gif;
 tex.gif;
 tex_big.gif;
+tth.gif;
 txt.gif;
 txt_big.gif;
 unknown.gif;
@@ -2695,6 +4613,8 @@ upperright.gif;
 user.gif;
 user_big.gif;
 userauthentication.gif;
+userauthentication_pt.gif;
+userauthentication_de.gif;
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
@@ -2708,6 +4628,9 @@ whitespace6.gif;
 whitespace7.gif;
 whitespace8.gif;
 whitespace9.gif;
+wink.gif;
+xls.gif;
+xls_big.gif;
 xml.gif;
 xml_big.gif;
 zip.gif;
@@ -2720,13 +4643,13 @@ zip_big.gif
 <targetdir dist='default'>home/httpd/html/adm/lonMisc/</targetdir>
 <categoryname>graphic file</categoryname>
 <description>
-Miscellaneous resources.  Respectively: button for catalog,
-button to set parameters in a page,
-button to do regrades, button to check on problem submissions,
+Miscellaneous resources.
 </description>
 <filenames>
 authorfeed.gif;
 bomb.gif;
+smallFAQ.gif;
+smallBug.gif;
 cat_button.gif;
 chat.gif;
 eval_button.gif;
@@ -2737,9 +4660,9 @@ subm_button.gif
 </filenames>
 </fileglob>
 <file>
-<source>loncom/xml/tth.pm</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/tth.pm</target>
+<source>modules/TexConvert/tthperl/tth.pm</source>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/tth.pm</target>
+<target dist='default'>home/httpd/lib/perl/tth.pm</target>
 <categoryname>system file</categoryname>
 <description>
 perl module for invoking functions specific to TeX-to-HTML conversion
@@ -2763,9 +4686,103 @@ tested
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/lonlocal.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonlocal.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     lonc/d handler for doing a local filesystem based init:
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+  <source>loncom/lonssl.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonssl.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     lonc/d handler for doing a remote SSL based init:
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+  <source>loncom/LondConnection.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LondConnection.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     Manages a connection between a lonc proxy daemon and the lond server
+     in the remote node.
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+  <source>loncom/LondTransaction.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LondTransaction.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+	Handles a single lon-capa insternal transaction
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/HashIterator.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/HashIterator.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+      Provides support to iterate through opaque hashes hidden e.g. within 
+      object private data.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/Queue.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/Queue.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+     Provides a FIFO queue class.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/Stack.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/Stack.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+     Provides a LIFO stack class.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/loncnew</source>
+   <target dist='default'>home/httpd/perl/loncnew</target>
+   <categoryname>script</categoryname>
+   <description>
+	  Proxy server for remote loncapa requests.
+          Needs CPAN Event module.
+   </description>
+</file>
+<file>
+<source>loncom/configuration/Configuration.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Configuration.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Configuration file reader (looks in /etc/httpd/conf/); accepts
+a list of *.conf files to inspect for PerlSetVar key/value
+entries.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/ConfigFileEdit.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Configuration file editing module
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>modules/TexConvert/tthperl/tth.so</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/tth.so</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/tth.so</target>
+<target dist='default'>home/httpd/lib/perl/tth.so</target>
 <categoryname>system file</categoryname>
 <description>
 shared library file for dynamic loading and unloading
@@ -2780,15 +4797,15 @@ related to this file during the build pr
 modules/TexConvert/tthperl/commands
 </build>
 <status>works/unverified</status>
-<dependencies>
+<privatedependencies>
 ../tthdynamic/tthfunc.c;
 ../ttmdynamic/ttmfunc.c
-</dependencies>
+</privatedependencies>
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.pm</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.pm</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.pm</target>
+<target dist='default'>home/httpd/lib/perl/capa.pm</target>
 <categoryname>system file</categoryname>
 <description>
 perl module for invoking functions specific to CAPA
@@ -2802,8 +4819,8 @@ the build process however.
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.bs</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.bs</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.bs</target>
+<target dist='default'>home/httpd/lib/perl/capa.bs</target>
 <categoryname>system file</categoryname>
 <description>
 bootstrap file associated with dynamic loading of this module on multiple
@@ -2818,8 +4835,8 @@ the build process however.
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.so</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.so</target>
 <target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.so</target>
+<target dist='default'>home/httpd/lib/perl/capa.so</target>
 <categoryname>system file</categoryname>
 <description>
 shared library file for dynamic loading and unloading
@@ -2829,7 +4846,34 @@ loncom/homework/caparesponse/commands
 </build>
 <dependencies>
 caparesponse.c;
-caparesponse.pm
+caparesponse.pm;
+README;
+Makefile.PL;
+capa.i;
+commands;
+../../../CAPA/pProj/Makefile;
+../../../CAPA/pProj/capaGrammarDef.y;
+../../../CAPA/pProj/capaFormula.y;
+../../../CAPA/pProj/capaLexerDef.flex;
+../../../CAPA/pProj/capaFunction.c;
+../../../CAPA/pProj/capaParserUtils.c;
+../../../CAPA/pProj/capaMapExpr.c;
+../../../CAPA/pProj/capaUnit.c;
+../../../CAPA/pProj/com.c;
+../../../CAPA/pProj/linpack.c;
+../../../CAPA/pProj/ranlib.c;
+../../../CAPA/pProj/capaCgiUtils.c;
+../../../CAPA/pProj/capaSubjective.c;
+../../../CAPA/pProj/capaRQO.c;
+../../../CAPA/pProj/capaFormulaLexer.c;
+../../../CAPA/pProj/capaCommon.c;
+../../../CAPA/pProj/capaCommon.h;
+../../../CAPA/pProj/ranlib.h;
+../../../CAPA/pProj/capaCGI.h;
+../../../CAPA/pProj/capaFunction.h;
+../../../CAPA/pProj/capaRQO.h;
+../../../CAPA/pProj/capaParser.h;
+../../../CAPA/pProj/lex_debug.h
 </dependencies>
 </file>
 <fileglob>
@@ -2922,19 +4966,230 @@ Define unit prefixing and conversion for
 </description>
 </file>
 <fileglob>
+<glob>*.jpg</glob>
+<sourcedir>loncom/html/adm/lonInterFace/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonInterFace/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Pages headers</description>
+<filenames>
+admin.jpg;
+author.jpg;
+coordinator.jpg;
+header.jpg;
+student.jpg;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.jpg</glob>
+<sourcedir>loncom/html/adm/lonDomLogos/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonDomLogos/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Logos of LON-CAPA domains (jpg)</description>
+<filenames>
+headermsu.jpg;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/adm/lonDomLogos/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonDomLogos/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Logos of LON-CAPA domains (gif)</description>
+<filenames>
+103.gif;
+gerd.gif;
+mio.gif;
+msuvu.gif;
+ohiou.gif;
+rhs.gif;
+sfu.gif;
+tmcc.gif;
+umich.gif;
+worf.gif;
+annarbor.gif;
+elps.gif;
+gwu.gif;
+msudemo.gif;
+ndsu.gif;
+physnet.gif;
+sc.gif;
+Selwyn.gif;
+ucf.gif;
+unihalle.gif;
+wscc.gif;
+cps.gif;
+fsu.gif;
+lsd.gif;
+msu.gif;
+nsdl.gif;
+pmm.gif;
+sunysb.gif;
+udel.gif;
+uz.gif;
+fvl.gif;
+csm.gif;
+nau.gif;
+nagoya.gif;
+acadiau.gif;
+psuerie.gif;
+redford.gif;
+huji.gif;
+ifusp.gif;
+ucsc.gif;
+waverly.gif;
+cmich.gif;
+UNICAMP.gif;
+glps.gif;
+BCHS.gif;
+headersfu.gif;
+uwsp.gif;
+bsu.gif;
+wmston.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.tab</glob>
+<sourcedir>loncom/html/adm/lonDomColors/</sourcedir>
+<targetdir dist='default'>home/httpd/lonTabs/lonDomColors/</targetdir>
+<categoryname>conf</categoryname>
+<description>Designs of LON-CAPA domains</description>
+<filenames>
+annarbor.tab;
+default.tab;
+msu.tab;
+csm.tab;
+huji.tab;
+nau.tab;
+nagoya.tab;
+acadiau.tab;
+psuerie.tab;
+redford.tab;
+cmich.tab;
+ifusp.tab;
+ucsc.tab;
+UNICAMP.tab;
+fsu.tab;
+sfu.tab;
+wmston.tab;
+worf.tab;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/adm/lonLCDfont/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonLCDfont/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>LON-CAPA remote control LCD font</description>
+<filenames>
+0.gif;
+1.gif;
+2.gif;
+3.gif;
+4.gif;
+5.gif;
+6.gif;
+7.gif;
+8.gif;
+9.gif;
+a.gif;
+b.gif;
+c.gif;
+d.gif;
+e.gif;
+f.gif;
+g.gif;
+h.gif;
+i.gif;
+j.gif;
+k.gif;
+l.gif;
+m.gif;
+n.gif;
+o.gif;
+p.gif;
+q.gif;
+r.gif;
+s.gif;
+t.gif;
+u.gif;
+v.gif;
+w.gif;
+x.gif;
+y.gif;
+z.gif;
+ö.gif;
+ä.gif;
+ü.gif;
+ä.gif;
+ö.gif;
+ü.gif;
+colon.gif;
+hyphen.gif;
+slash.gif;
+space.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/res/adm/pages/pt/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/pt/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>icons used for the Portuguese LON-CAPA user interface</description>
+<filenames>
+anno_pt.gif;
+anot_pt.gif;
+bchat_pt.gif;
+catalog_pt.gif;
+ccrs_pt.gif;
+chrt_pt.gif;
+com_pt.gif;
+courses_pt.gif;
+cprv_pt.gif;
+cstr_pt.gif;
+docs_pt.gif;
+egrd_pt.gif;
+enrl_pt.gif;
+eval_pt.gif;
+fdbk_pt.gif;
+grds_pt.gif;
+keys_pt.gif;
+logout_pt.gif;
+nav_pt.gif;
+parm_pt.gif;
+pref_pt.gif;
+prt_pt.gif;
+res_pt.gif;
+roles_pt.gif;
+sbkm_pt.gif;
+spacer_pt.gif;
+sprs_pt.gif;
+src_pt.gif;
+stat_pt.gif;
+vbkm_pt.gif;
+</filenames>
+</fileglob>
+<fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
 <categoryname>graphic file</categoryname>
 <description>icons used for the entire LON-CAPA user interface</description>
 <filenames>
-a.gif;
+anno.gif;
 anot.gif;
-b.gif;
 back.gif;
+bchat.gif;
 bkm.gif;
+bl_step1.gif;
+bl_step2.gif;
+bl_step3.gif;
+bl_step4.gif;
+bl_step5.gif;
+bl_step6.gif;
+bl_step7.gif;
+bl_step8.gif;
+bl_step9.gif;
 brws.gif;
-c.gif;
 catalog.gif;
 ccrs.gif;
 chat.gif;
@@ -2943,71 +5198,50 @@ com.gif;
 courses.gif;
 cprv.gif;
 cstr.gif;
-d.gif;
 dempty.gif;
-e.gif;
+docs.gif;
 egrd.gif;
 empty.gif;
 enrl.gif;
 eval.gif;
-f.gif;
 fdbk.gif;
 feedback.gif;
 forw.gif;
-g.gif;
 grds.gif;
 group.gif;
-h.gif;
 help.gif;
-hyphen.gif;
-i.gif;
 info.gif;
-j.gif;
-k.gif;
-l.gif;
+keys.gif;
 ledblink.gif;
 ledgreen.gif;
 ledoff.gif;
 ledon.gif;
 ledsend.gif;
 logout.gif;
-m.gif;
+mcrs.gif;
 mrk.gif;
-n.gif;
 nav.gif;
 next.gif;
-o.gif;
-p.gif;
+nothumb.gif;
 parm.gif;
 pgrd.gif;
 pparm.gif;
 pref.gif;
 prev.gif;
 prt.gif;
-q.gif;
 qempty.gif;
-r.gif;
 reload.gif;
 remotebg.gif;
 res.gif;
 roles.gif;
-s.gif;
 sbkm.gif;
-space.gif;
 spacer.gif;
 sprs.gif;
 src.gif;
 stat.gif;
 subm.gif;
-t.gif;
 title.gif;
-u.gif;
-v.gif;
 vbkm.gif;
-w.gif;
-x.gif;
-y.gif;
-z.gif
 </filenames>
 </fileglob>
 <file>
@@ -3037,10 +5271,11 @@ renders the HTML (including image maps)
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/indexericons/</sourcedir>
-<targetdir dist='default'>home/httpd/html/res/adm/pages/indexericons/</targetdir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/indexericons/
+</targetdir>
 <categoryname>graphic file</categoryname>
 <description>
-icons used for the bookmark portion of the LON-CAPA user interface
+icons used for directory indexing and login screen
 </description>
 <filenames>
 a.gif;
@@ -3141,7 +5376,7 @@ world2.gif
 </targetdir>
 <categoryname>graphic file</categoryname>
 <description>
-icons used for directory indexing and login screen
+icons used for the bookmark portion of the LON-CAPA user interface
 </description>
 <filenames>
 folder_anim.gif;
@@ -3176,7 +5411,7 @@ ur_corner.gif
 </targetdir>
 <categoryname>interface file</categoryname>
 <description>
-associated with the frameset scheme of displaying bookmarks
+associated with the scheme of displaying bookmarks
 </description>
 <filenames>
 bookmarkmenu_toolbar.html;
@@ -3184,6 +5419,22 @@ blank.html;
 closechildren.html
 </filenames>
 </fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/res/adm/pages/reactionresponse/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Associated file for answering reactionresponse style questions
+</description>
+<filenames>
+reaction_editor.html;
+reaction_frame.html;
+reaction_help.html;
+reaction_viewer.html;
+reaction_window.html
+</filenames>
+</fileglob>
 <file>
 <source>loncom/html/res/adm/pages/bookmarkmenu/bookmarklib.js</source>
 <target dist='default'>
@@ -3194,9 +5445,18 @@ javascript for handling client-side inte
 </description>
 </file>
 <file>
+<source>loncom/build/CHECKRPMS</source>
+<target dist='default'>usr/local/loncapa/bin/CHECKRPMS</target>
+<categoryname>system script</categoryname>
+<description>
+manilla wrapper around check-rpms
+</description>
+<status>tested/documented/beta</status>
+</file>
+<file>
 <source>loncom/build/check-rpms</source>
-<target dist='default'>usr/local/bin/check-rpms</target>
-<categoryname>root script</categoryname>
+<target dist='default'>usr/local/loncapa/bin/check-rpms</target>
+<categoryname>system script</categoryname>
 <description>
 compare installed rpms with up-to-date distribution
 </description>
@@ -3223,8 +5483,8 @@ echo 'manifying check-rpms'
 <categoryname>doc</categoryname>
 <description>POD-derived page for check-rpms</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh check-rpms &gt; ../../doc/scripts/check-rpms.html &amp;&amp; \
-echo 'pod2html checkrpms'
+loncom/build/pod2html.sh check-rpms &gt; ../../doc/scripts/check-rpms.html \
+&amp;&amp; echo 'pod2html checkrpms'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -3233,25 +5493,35 @@ echo 'pod2html checkrpms'
 </file>
 <file>
 <source>loncom/build/loncaparestoreconfigurations</source>
-<target dist='default'>usr/sbin/loncaparestoreconfigurations</target>
+<target dist='default'>usr/local/loncapa/sbin/loncaparestoreconfigurations
+</target>
 <categoryname>script</categoryname>
 <description>
-restores .rpmsave files after a LON-CAPA-base upgrade
+Updates .lpmlnew files with previous settings.  Also supports alternative
+schemes of settings-updating and file-overwriting.
 </description>
-<status>deprecated</status>
+<status>works/unverified</status>
 </file>
 <file>
-<source>loncom/cron/loncapa</source>
-<target dist='default'>etc/cron.d/loncapa</target>
-<categoryname>static conf</categoryname>
-<description>
-file that specifies periodic processes to run for the LON-CAPA machine
-</description>
+  <source>loncom/cron/loncapa.built</source>
+  <target dist='default'>etc/cron.d/loncapa</target>
+  <categoryname>conf</categoryname>
+  <description>
+    file that specifies periodic processes to run for the LON-CAPA machine
+  </description>
+  <build trigger='always run'>
+loncom/cron/preserve_local_loncapa_cron
+  </build>
+  <dependencies>
+loncapa;
+preserve_local_loncapa_cron
+  </dependencies>
 </file>
 <file>
 <source>loncom/ntp/step-tickers</source>
-<target dist='default'>etc/ntp/step-tickers</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/ntp_step-tickers
+</target>
+<categoryname>static conf</categoryname>
 <description>
 file that stimulates running of ntpdate upon init.d/xntpd initiation
 </description>
@@ -3302,12 +5572,61 @@ symbolic links to /etc/rc.d/init.d/lonco
 </link>
 <file>
 <source>loncom/atalk/config</source>
-<target dist='default'>etc/atalk/config</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/config</target>
+<categoryname>static conf</categoryname>
 <description>
 configuration file to make LON-CAPA server file space accessible to
 Appleshares access (Macintosh)
 </description>
 </file>
+<file>
+  <source>loncom/interface/lonmodifycourse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmodifycourse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface to modifying a course's internal ENV values for automated
+    enrollement
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpopulate.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpopulate.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for configuring automated enrollment
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/Enrollment.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/Enrollment.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for automated enrollment
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/localenroll.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localenroll.pm</target>
+  <categoryname>conf</categoryname>
+  <description>
+    Local handler for automated enrollment.
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/localenroll.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localenroll-std.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Local handler for automated enrollment, standard version.
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/Autoenroll.pl</source>
+  <target dist='default'>home/httpd/perl/Autoenroll.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Local handler for automated enrollment, standard version.
+  </description>
+</file>
 </files>
 </lpml>