--- doc/loncapafiles/loncapafiles.lpml	2008/05/30 16:04:30	1.588
+++ doc/loncapafiles/loncapafiles.lpml	2009/10/02 02:00:12	1.645.4.9
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.588 2008/05/30 16:04:30 www Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.645.4.9 2009/10/02 02:00:12 raeburn Exp $ -->
 
 <!--
 
@@ -247,56 +247,56 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian'>etc/init.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian'>etc/rc0.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian'>etc/rc1.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian'>etc/rc2.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian'>etc/rc3.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian'>etc/rc4.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian'>etc/rc5.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian'>etc/rc6.d</targetdir>
+  <targetdir dist='debian5 ubuntu6 ubuntu8 suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
@@ -363,6 +363,18 @@ Used by lond parent to check if children
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/captchaspool</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for temporary storage of Captcha images</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/captchadb</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for temporary storage of Captcha codes</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA software modules and
@@ -457,6 +469,30 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/images</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>images directory for GCI</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/images/login</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>directory for images for GCI log-in page</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/portal</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>directory for web pages for GCI portal</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/css</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>css directory for GCI</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm</targetdir>
   <categoryname>server readonly</categoryname>
   <description>unauthenticated resources</description>
@@ -765,6 +801,7 @@ are viewable over the world-wide web</de
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
   <targetdir dist='redhat8 redhat9'>usr/lib/perl5/site_perl/5.8.0</targetdir>
+  <targetdir dist='debian5'>usr/local/lib/perl/5.10.0</targetdir>
   <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
@@ -847,7 +884,7 @@ each list element consists of only two s
 <file>
 <source>loncom/loncapa.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa.conf</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/loncapa.conf</target>
+<target dist='sles10 suse10.1 suse10.2 suse10.3 suse11.1 debian5 ubuntu6 ubuntu8'>etc/apache2/loncapa.conf</target>
 <categoryname>conf</categoryname>
 <description>
 <p>
@@ -890,7 +927,7 @@ MySQL database</td></tr>
 <file>
 <source>loncom/loncapa_apache.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_apache.conf</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/loncapa_apache.conf</target>
+<target dist='sles10 suse10.1 suse10.2 suse10.3 suse11.1 debian5 ubuntu6 ubuntu8'>etc/apache2/loncapa_apache.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 The goal of this file is to implement all LON-CAPA specific
@@ -910,7 +947,7 @@ the www@localhost MySQL password, and br
 <file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/startup.pl</target>
+<target dist='sles10 suse10.1 suse10.2 suse10.3 suse11.1 debian5 ubuntu6 ubuntu8'>etc/apache2/startup.pl</target>
 <categoryname>static conf</categoryname>
 <description>
 This file provides initializations for perl handlers.  It adjusts what
@@ -919,6 +956,16 @@ well as causing the Apache module to be
 <tt>startup.pl</tt> is invoked by <tt>loncapa_apache.conf</tt>.
 </description>
 </file>
+<link>
+<linkto>etc/apache2</linkto>
+<target dist='debian5 ubuntu6 ubuntu8'>
+etc/apache2/conf
+</target>
+<categoryname>symbolic link</categoryname>
+<description>
+symbolic link to directory /etc/apache2 from /etc/apache2/conf
+</description>
+</link>
 <file>
 <source>loncom/thesaurus/thesaurus.db</source>
 <target dist='default'>home/httpd/lonTabs/thesaurus.db</target>
@@ -1041,6 +1088,14 @@ utility cgi script to view status of per
   </description>
 </file>
 <file>
+  <source>loncom/cgi/lonauthcgi.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonauthcgi.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides routines used in authorization of server status CGI scripts 
+  </description>
+</file>
+<file>
 <source>loncom/cgi/graph.png</source>
 <target dist='default'>home/httpd/cgi-bin/graph.png</target>
 <categoryname>script</categoryname>
@@ -1223,6 +1278,8 @@ optional_criteria.task;
 optional_criteria.task.meta;
 ClickImageExample.problem;
 ClickImageExample.problem.meta;
+custompartial.problem;
+custompartial.problem.meta;
 CustomResponse.problem;
 CustomResponse.problem.meta;
 Essay.problem;
@@ -1242,6 +1299,8 @@ Plot_curve.problem;
 Plot_curve.problem.meta;
 Plot_data.problem;
 Plot_data.problem.meta;
+Rnumerical.problem;
+Rnumerical.problem.meta;
 RadioResponse.problem;
 RadioResponse.problem.meta;
 RandomLabelExample.problem;
@@ -1271,14 +1330,20 @@ SimpleMatching.problem;
 SimpleMatching.problem.meta;
 SimpleMathResponse.problem;
 SimpleMathResponse.problem.meta;
+SimpleMathResponseR.problem;
+SimpleMathResponseR.problem.meta;
 SimpleRank.problem;
 SimpleRank.problem.meta;
 SimpleTrueFalse.problem;
 SimpleTrueFalse.problem.meta;
 organic.problem;
 organic.problem.meta;
+organic_hint.problem;
+organic_hint.problem.meta;
 reaction.problem;
-reaction.problem.meta
+reaction.problem.meta;
+reaction_hint.problem;
+reaction_hint.problem.meta
 </filenames>
 </fileglob>
 
@@ -1507,14 +1572,6 @@ propagate the ids in ids.db to all cours
   </description>
 </file>
 <file>
-<source>loncom/lonhttpd</source>
-<target dist='default'>home/httpd/perl/lonhttpd</target>
-<categoryname>script</categoryname>
-<description>
-Small fry httpd on port 8080
-</description>
-</file>
-<file>
 <source>loncom/lonmemcached</source>
 <target dist='default'>home/httpd/perl/lonmemcached</target>
 <categoryname>script</categoryname>
@@ -1531,6 +1588,14 @@ small script to handle the start up of t
   </description>
 </file>
 <file>
+  <source>loncom/lonr</source>
+  <target dist='default'>home/httpd/perl/lonr</target>
+  <categoryname>script</categoryname>
+  <description>
+    manages the existance and talking to the R processes
+  </description>
+</file>
+<file>
     <source>loncom/request_ssl_key.sh</source>
     <target dist='default'>home/httpd/lonCerts/request_ssl_key.sh</target>
     <categoryname>script</categoryname>
@@ -1683,6 +1748,16 @@ user passwords.
 <status>being updated</status>
 </file>
 <file>
+<source>loncom/lcinstallfile</source>
+<target dist='default'>home/httpd/perl/lcinstallfile</target>
+<categoryname>setuid script</categoryname>
+<description>
+Set uid file that allows lond to install files in 
+lonTab which is normally owned by root.
+</description>
+<status>under construction</status>
+</file>
+<file>
 <source>loncom/pwchange</source>
 <target dist='default'>home/httpd/perl/pwchange</target>
 <categoryname>setuid script</categoryname>
@@ -1713,6 +1788,16 @@ set according to the user's authenticati
 <status>New file</status>
 </file>
 <file>
+<source>loncom/lciptables</source>
+<target dist='default'>home/httpd/perl/lciptables</target>
+<categoryname>setuid script</categoryname>
+<description>
+Calls iptables to update firewall settings for port used for internal
+LON-CAPA communication to receive traffic from other servers in cluster
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/lcuserdel</source>
 <target dist='default'>home/httpd/perl/lcuserdel</target>
 <categoryname>setuid script</categoryname>
@@ -1894,14 +1979,6 @@ combinations.
 </description>
 </file>
 <file>
-<source>loncom/interface/timezone.tab</source>
-<target dist='default'>home/httpd/lonTabs/timezone.tab</target>
-<categoryname>static conf</categoryname>
-<description>
-Table which contains valid timezone values
-</description>
-</file>
-<file>
 <source>loncom/publisher/addid.tab</source>
 <target dist='default'>home/httpd/lonTabs/addid.tab</target>
 <categoryname>static conf</categoryname>
@@ -1929,6 +2006,15 @@ Handler for course documents
 <status>works/unverified</status>
 </file>
 <file>
+<source>modules/gci/londocsgci.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/londocsgci.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Routines used by londocs.pm for building/validating Concept Test for GCI project.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonchat.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonchat.pm</target>
 <categoryname>handler</categoryname>
@@ -2037,6 +2123,15 @@ Handler for a DC to pick an author from
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonpickuser.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickuser.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a user from a directory search
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonbulletin.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonbulletin.pm</target>
 <categoryname>handler</categoryname>
@@ -2132,6 +2227,14 @@ buildMakeWrapper
 </dependencies>
 </file>
 <file>
+<source>loncom/html/adm/help/help.png</source>
+<target dist='default'>home/httpd/html/adm/help/help.png</target>
+<categoryname>interface file</categoryname>
+<description>
+help icon
+</description>
+</file>
+<file>
 <source>loncom/html/adm/help/abouthelp.html</source>
 <target dist='default'>home/httpd/html/adm/help/abouthelp.html</target>
 <categoryname>interface file</categoryname>
@@ -2175,7 +2278,7 @@ manual online, with a somewhat clumsy in
 </target>
 <categoryname>interface file</categoryname>
 <description>
-The pseudo-LaTeX file to allow people to read the course administrator's
+The pseudo-LaTeX file to allow people to read the domain coordination
 manual online, with a somewhat clumsy interface.
 </description>
 <status>works/unverified</status>
@@ -2515,7 +2618,7 @@ Authoring_ImageResponse.tex;
 Authoring_Input_Tags.tex;
 Authoring_Internal_Tags.tex;
 Authoring_Intro.tex;
-Authoring_M_Tag.tex;
+Authoring_Math_Editor.tex;
 Authoring_NumericalResponse.tex;
 Authoring_OptionResponse.tex;
 Authoring_Output_Tags.tex;
@@ -2608,6 +2711,24 @@ Course_Modify_Student_Data.tex;
 Course_Parameter_Levels.tex;
 Course_Parameter_Table_Mode.tex;
 Course_Problem_Weight.tex;
+Course_Request_Access_End.tex;
+Course_Request_Access_Start.tex;
+Course_Request_Autoadd.tex;
+Course_Request_Autodrop.tex;
+Course_Request_Category.tex;
+Course_Request_Clone.tex;
+Course_Request_Crosslist.tex;
+Course_Request_Description.tex;
+Course_Request_Enroll_End.tex;
+Course_Request_Enroll_Start.tex;
+Course_Request_LCSection.tex;
+Course_Request_Personnel.tex;
+Course_Request_RegAccess_End.tex;
+Course_Request_RegAccess_Start.tex;
+Course_Request_Rolesection.tex;
+Course_Request_Sections.tex;
+Course_Roles.tex;
+Course_Self_Enrollment.tex;
 Course_Set_Start_End_Date.tex;
 Course_Setting_Parameters.tex;
 Course_Student_Grade_Override.tex;
@@ -2618,6 +2739,7 @@ Course_User_Parameter.tex;
 Course_View_Class_List.tex;
 Create_Course.tex;
 Creating_A_Course_Intro.tex;
+Creating_Domain_Coordinators.tex;
 Creating_Groups.tex;
 Creating_New_Content_Pages.tex;
 Creating_Online_Problems.tex;
@@ -2657,6 +2779,22 @@ Docs_String_Response.tex;
 Docs_Supplemental.tex;
 Docs_Uploading_From_Harddrive.tex;
 Docs_Verify_Content.tex;
+Domain_Configuration_Auto_Enrollment.tex;
+Domain_Configuration_Auto_Updates.tex;
+Domain_Configuration_Cataloging_Courses.tex;
+Domain_Configuration_Color_Schemes.tex;
+Domain_Configuration_Contact_Info.tex;
+Domain_Configuration_InstDirectory_Search.tex;
+Domain_Configuration_LangTZAuth.tex;
+Domain_Configuration_Login_Page.tex;
+Domain_Configuration_Quotas.tex;
+Domain_Configuration_Scantron_Format.tex;
+Domain_Configuration_User_Creation.tex;
+Domain_Configuration_User_Modification.tex;
+Domain_Coordination_Intro.tex;
+Domain_Coordination_Overview.tex;
+Domain_Crontab_Entries.tex;
+Domain_Manual_Title_Page.tex;
 Due_Date.tex;
 Edit_Syllabus.tex;
 Error.tex;
@@ -2678,6 +2816,7 @@ Feedback_Policy.tex;
 Finding_Resources.tex;
 Foils.tex;
 Formula_Answers.tex;
+Formula_Editor.tex;
 Formula_Response_Adv_Intro.tex;
 Formula_Response_Example.tex;
 Formula_Response_Limitations.tex;
@@ -2706,11 +2845,18 @@ Guts_User_Dir.tex;
 Help.tex;
 Helper_Course_Initialization.tex;
 How_To_Edit_Existing_Content_Pages.tex;
+Institutional_Integration_Authentication.tex;
+Institutional_Integration_Course_Codes.tex;
+Institutional_Integration_Format_Checks.tex;
+Institutional_Integration_Identity_Management.tex;
+Institutional_Integration_User_Categories.tex;
 Latex_Footer.tex;
 Latex_Header.tex;
 Leaving_Feedback.tex;
 Login_To_LON-CAPA.tex;
 Math_Response_Problems.tex;
+Maxima_Argument_Array.tex;
+Maxima_Libraries.tex;
 Metadata_Description.tex;
 Navigation_Screen.tex;
 Navmap_Host_Down.tex;
@@ -2864,6 +3010,7 @@ Tolerance.tex;
 Uploaded_Templates_PublicView.tex;
 Uploaded_Templates_TextBoxes.tex;
 Uploading_File_Options.tex;
+Using_Clickers.tex;
 Variable_Naming_Conventions.tex;
 Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
@@ -2888,8 +3035,10 @@ German Tex files for the help system
 <filenames>
 About_Bombs.tex;
 About_Communication.tex;
+Authoring_Math_Editor.tex;
 Contextual_Help.tex;
 Cascading_Parameters.tex;
+Course_Self_Enrollment.tex;
 Docs_About_Bulletin_Board.tex;
 Docs_About_Group_Files.tex;
 Docs_About_My_Personal_Info.tex;
@@ -2901,12 +3050,18 @@ Docs_Editing_Templated_Pages.tex;
 Docs_Navigate_Content.tex;
 Docs_Score_Upload_Form.tex;
 Docs_Verify_Content.tex;
+Formula_Editor.tex;
 General_Intro.tex;
+Generation.tex;
+Metadata_Description.tex;
 Navigation_Screen.tex;
 Parameter_Overview.tex;
 Problem_Parameters.tex;
+Publishing_Copyright.tex;
+Publishing_Keywords.tex;
 Quick_Grades_Possibly_Correct.tex;
 Ranking_Problems.tex;
+Receipt.tex;
 Search_Advanced.tex;
 Search_Basic.tex;
 Student_Intro.tex;
@@ -3384,12 +3539,29 @@ Internal routines for creating a clone o
   <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonrequestcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrequestcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows submission of course requests by users with the right to request them 
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/loncoursequeueadmin.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursequeueadmin.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Common routines for administration of queues containing user-submitted requests - either for self-enrollment in an existing course, or for creation of a new course.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/loncreateuser.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncreateuser.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Allows users to within their own privileges create/edit users and give
-them roles. 
+Allows users to within their own privileges create/edit users and give them roles.
 </description>
 <status>works/unverified</status>
 </file>
@@ -3471,9 +3643,26 @@ fa.pm;
 ar.pm;
 es.pm;
 x_chef.pm;
+zh.pm;
 </filenames>
 </fileglob>
 <file>
+<source>modules/gci/gci.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/localize/gci.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Customized phrases for GCI branch of LON-CAPA for WebCenter domain (gci)
+</description>
+</file>
+<file>
+<source>modules/gci/gct.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/localize/gct.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Customized phrases for GCI branch of LON-CAPA for Testing Center domain (gcitest)
+</description>
+</file>
+<file>
 <source>loncom/interface/loncoursedata.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncoursedata.pm</target>
 <categoryname>handler</categoryname>
@@ -3635,6 +3824,8 @@ Latex.html;
 MathML.html;
 Maxima.html;
 MaximaPopup.html;
+EditMathPopup.html;
+FCKEditMathPopup.html
   </filenames>
 </fileglob>
 <fileglob>
@@ -3768,7 +3959,7 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 </file>
 
 <file>
-  <source>loncom/html/adm/fckeditor/FCKeditor_2.4.3.tar.gz</source>
+  <source>loncom/html/adm/fckeditor/FCKeditor_2.6.3.tar.gz</source>
   <target dist='default'>home/httpd/html/adm/fckeditor</target>
   <categoryname>script</categoryname>
   <description>
@@ -3780,7 +3971,7 @@ commands /home/httpd/html/
   </installscript>
   <dependencies>
 loncom/html/adm/fckeditor/commands;
-loncom/html/adm/fckeditor/FCKeditor_2.4.3.tar.gz;
+loncom/html/adm/fckeditor/FCKeditor_2.6.3.tar.gz;
 loncom/html/adm/fckeditor/loncapaconfig.js;
   </dependencies>
 </file>
@@ -4186,6 +4377,14 @@ The handler displays messages, has routi
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/courseprefs.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/courseprefs.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for displaying/modifying course configuration
+  </description>
+</file>
+<file>
 <source>loncom/homework/hint.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/hint.pm</target>
 <categoryname>handler</categoryname>
@@ -4591,6 +4790,15 @@ Tags Default Definition Module
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/lontable.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontable.pm</target>
+<categoryname>server standard</categoryname>
+<description>
+Table object
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/run.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/run.pm</target>
 <categoryname>handler</categoryname>
@@ -4733,6 +4941,15 @@ handles request to the CAPA homework pro
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/lonr.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonr.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    routines to simplify talking to the R client
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/Safe.pm</source>
 <target dist='default'>home/httpd/lib/perl/Safe.pm</target>
 <categoryname>handler</categoryname>
@@ -4936,6 +5153,18 @@ loncom/build/pod2html.sh ../auth/loncacc
 </dependencies>
 </file>
 <file>
+<source>loncom/auth/lonstatusacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstatusacc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+This module provides access to server status - Apache's server-status and
+files in the /home/httpd/html/lon-status directory, for which it is invoked 
+by the URL-related pattern syntax:
+<tt>LocationMatch "^/+lon-status/.*"</tt>.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonauth.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonauth.pm</target>
 <categoryname>handler</categoryname>
@@ -4943,7 +5172,7 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/auth/lonlogin.pm</source>
+<source>modules/gci/lonlogin.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonlogin.pm</target>
 <categoryname>handler</categoryname>
 <description>login screen</description>
@@ -4964,6 +5193,13 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/lonipcheck.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonipcheck.pm</target>
+<categoryname>handler</categoryname>
+<description>Checks IP-based access control settings - disable subsequent PerlHandlers if client's IP is blocked</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/londatecheck.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londatecheck.pm</target>
 <categoryname>handler</categoryname>
@@ -5182,13 +5418,13 @@ Domain information serving.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/html/index.html</source>
+<source>modules/gci/index.html</source>
 <target dist='default'>home/httpd/html/index.html</target>
 <categoryname>interface file</categoryname>
 <description>bumps to login</description>
 </file>
 <file>
-<source>loncom/html/index.html</source>
+<source>modules/gci/index.html</source>
 <target dist='default'>home/httpd/html/origindex.html</target>
 <categoryname>interface file</categoryname>
 <description>bumps to login, backup for takeonline</description>
@@ -5202,7 +5438,7 @@ Domain information serving.
 <file>
 <source>loncom/mime.types</source>
 <target dist='default'>etc/httpd/conf/mime.types</target>
-<target dist='sles10 suse10.1 suse10.2 suse10.3'>etc/apache2/mime.types</target>
+<target dist='sles10 suse10.1 suse10.2 suse10.3 suse11.1 debian5 ubuntu6 ubuntu8'>etc/apache2/mime.types</target>
 <categoryname>www static conf</categoryname>
 <description>Expanded mime.types</description>
 </file>
@@ -5302,6 +5538,14 @@ A blank page with very minimal HTML stru
 A blank page which calls drawwindow in its opener after being loaded.
 </description>
 </file>
+<file>
+<source>loncom/includepsheader.ps</source>
+<target dist='default'>home/httpd/lib/includepsheader.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+Extra header for dvips
+</description>
+</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>rat/images/</sourcedir>
@@ -5451,11 +5695,11 @@ logos and general widget icons
 <filenames>
 SMETE_white.gif;
 aboutlon.gif;
-aboutlon_pt.gif;
 aboutlon_de.gif;
+aboutlon_pt.gif;
 accessbutton.gif;
-accessbutton_pt.gif;
 accessbutton_de.gif;
+accessbutton_pt.gif;
 angry.gif;
 arrow_up.gif;
 baeh.gif;
@@ -5504,6 +5748,7 @@ html_big.gif;
 huh.gif;
 jar.gif;
 jar_big.gif;
+jpeg.gif;
 jpg.gif;
 jpg_big.gif;
 latex.gif;
@@ -5573,6 +5818,7 @@ srvempty.gif;
 srvgood.gif;
 srvhalf.gif;
 srvnull.gif;
+stift.gif;
 survey.gif;
 survey_big.gif;
 task.gif;
@@ -5594,6 +5840,7 @@ userauthentication_de.gif;
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
+whitespace_21.gif;
 whitespace1.gif;
 whitespace10.gif;
 whitespace2.gif;
@@ -5641,6 +5888,104 @@ subm_button.gif;
 subm_button.png;
 </filenames>
 </fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>modules/gci/images/</sourcedir>
+<targetdir dist='default'>home/httpd/html/images/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>
+Images for GCI portal pages
+</description>
+<filenames>
+devcycle.jpg;
+devcyclesmall.jpg;
+earth.gif;
+question.jpg;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>modules/gci/images/login/gci/</sourcedir>
+<targetdir dist='default'>home/httpd/html/images/login/gci</targetdir>
+<categoryname>graphic file</categoryname>
+<description>
+Images for custom log-in page for GCI WebCenter
+</description>
+<filenames>
+logo_smrnd.png;
+r1_c1.png;
+r1_c7.png;
+r2_c4.png;
+r2_c6.png;
+r8_c4.png;
+r8_c6.png;
+r9_c1.png;
+r9_c7.png;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>modules/gci/images/login/gcitest/</sourcedir>
+<targetdir dist='default'>home/httpd/html/images/login/gcitest</targetdir>
+<categoryname>graphic file</categoryname>
+<description>
+Images for custom log-in page for GCI Testing Center
+</description>
+<filenames>
+logo_smrnd.png;
+r1_c1.png;
+r1_c7.png;
+r2_c4.png;
+r2_c6.png;
+r8_c4.png;
+r8_c6.png;
+r9_c1.png;
+r9_c7.png;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>modules/gci/portal/</sourcedir>
+<targetdir dist='default'>home/httpd/html/portal/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Web pages for GCI portal
+</description>
+<filenames>
+identifyalternative.html;
+identifytarget.html;
+peerreview.html;
+pilotquestions.html;
+quantitative.html;
+thinkaloud.html;
+userfeedback.html;
+writequestion.html;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>modules/gci/css/gci/</sourcedir>
+<targetdir dist='default'>home/httpd/html/css/gci/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+CSS for GCI WebCenter (gci domain)
+</description>
+<filenames>
+login.css;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>modules/gci/css/gcitest/</sourcedir>
+<targetdir dist='default'>home/httpd/html/css/gcitest/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+CSS for GCI Testing Center (gcitest domain)
+</description>
+<filenames>
+login.css;
+</filenames>
+</fileglob>
 <file>
 <source>loncom/xml/algebra/AlgParser.pm</source>
 <target dist='default'>home/httpd/lib/perl/AlgParser.pm</target>
@@ -5761,6 +6106,16 @@ entries.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/configuration/Firewall.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Firewall.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Provides methods to open and close firewall ports used 
+for socket-based communication between LON-CAPA servers
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/ConfigFileEdit.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
 <categoryname>system file</categoryname>
@@ -5789,7 +6144,9 @@ modules/TexConvert/tthperl/commands
 <dependencies>
 commands;
 compiles/tth.so.i386;
-compiles/tth.so.x86_64
+compiles/tth.so.x86_64;
+compiles/tth.so.i386.perl.5.10;
+compiles/tth.so.x86_64.perl.5.10;
 </dependencies>
 </file>
 <file>
@@ -5877,12 +6234,14 @@ loncom/cgi/mimeTeX/commands
 commands;
 gfuntype.c;
 gifsave.c;
+loncapanewcommands.h;
 mimetex.c;
 mimetex.h;
 mimetex.html;
 README;
 texfonts.h;
 LICENSE;
+VERSION;
 </dependencies>
 </file>
 <fileglob>
@@ -6255,6 +6614,7 @@ vbkm_pt.gif;
 <filenames>
 anno.gif;
 anot.gif;
+anot2.gif;
 back.gif;
 bchat.gif;
 bkm.gif;
@@ -6312,6 +6672,7 @@ next.gif;
 nothumb.gif;
 parm.gif;
 pcstr.gif;
+pdfupload.gif;
 pgrd.gif;
 port.gif;
 pparm.gif;
@@ -6319,16 +6680,19 @@ pref.gif;
 prt.gif;
 pub.gif;
 qempty.gif;
+rcrs.gif;
 reload.gif;
 remotebg.gif;
 res.gif;
 roles.gif;
+rsrv.gif;
 rtrv.gif;
 sbkm.gif;
 sctr.gif;
 spacer.gif;
 sprs.gif;
 src.gif;
+srvr.gif;
 stat.gif;
 subm.gif;
 title.gif;
@@ -6361,21 +6725,24 @@ roles.png;
 sprs.png;
 vbkm.png;
 anot.png;
+anot2.png;
 blog.png;
 chrt.png;
 cprv.png;
 del.png;
 egrd.png;
 fdbk.png;
-help.png;
 keys.png;
 list.png;
 mcrs.png;
 parm.png;
 port.png;
 prt.png;
+rcrs.png;
+rsrv.png;
 sbkm.png;
 src.png;
+srvr.png;
 subm.png;
 back.png;
 catalog.png;
@@ -6392,6 +6759,17 @@ res.png;
 rtrv.png;
 sctr.png;
 stat.png;
+pdfupload.png;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.png</glob>
+<sourcedir>loncom/html/res/adm/pages/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>graphical icons used in submenus</description>
+<filenames>
+remotecontrol.png;
 </filenames>
 </fileglob>
 <file>
@@ -6708,7 +7086,7 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
-<target dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3'>etc/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1 debian5 ubuntu6 ubuntu8'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
@@ -6716,7 +7094,7 @@ Controls the launching/halting of lonc,
 </file>
 <link>
 <linkto dist='default'>etc/rc.d/init.d/loncontrol</linkto>
-<linkto dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3'>etc/init.d/loncontrol</linkto>
+<linkto dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2 suse10.3 suse11.1 debian5 ubuntu6 ubuntu8'>etc/init.d/loncontrol</linkto>
 <target dist='default'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
@@ -6726,19 +7104,19 @@ etc/rc.d/rc4.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
-<target dist='suse10.2 suse10.3'></target>
 <categoryname>symbolic link</categoryname>
 <description>
-symbolic links to /etc/rc.d/init.d/loncontrol for run-levels</description>
+symbolic links to /etc/rc.d/init.d/loncontrol (redhat/fedora) or /etc/init.d/loncontrol (suse/debian) for run-levels
+</description>
 </link>
 
-<file dist="suse10.2 suse10.3">
+<file dist="suse10.2 suse10.3 suse11.1">
   <source>loncom/init.d/loncontrol</source>
   <target>etc/rc.d/</target>
   <description>
     setup loncontrol to run at boot
   </description>
-  <installscript dist="suse10.2 suse10.3">
+  <installscript dist="suse10.2 suse10.3 suse11.1">
 -c 'chkconfig --del loncontrol;chkconfig loncontrol 345;chkconfig --list loncontrol'
   </installscript>
   <dependencies>
@@ -6866,6 +7244,31 @@ of users, and (b) to display e-mail of t
   </description>
 </file>
 <file>
+  <source>loncom/interface/domainstatus.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/domainstatus.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for generation of a menu of links to server status utilities
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonconfigsettings.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonconfigsettings.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Common routines for generating menus to set default configuration settings -  
+   for a domain or for a course.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpdfupload.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpdfupload.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Interface to upload a PDF form containing responses to problems entered offline using a PDF reader for storage as submissions.
+  </description>
+</file>
+<file>
   <source>loncom/interface/lonpopulate.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonpopulate.pm</target>
   <categoryname>handler</categoryname>
@@ -6966,6 +7369,7 @@ modify_config_files.pl;
 parse_scantron.pl;
 seed_accesscount.pl;
 stress.pl;
+testkerberos.pl;
 unescape.pl;
 user_login_count.pl;
 </filenames>