--- doc/loncapafiles/loncapafiles.lpml	2009/03/23 11:09:23	1.635
+++ doc/loncapafiles/loncapafiles.lpml	2009/05/21 12:54:25	1.645.2.2
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.635 2009/03/23 11:09:23 foxr Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.645.2.2 2009/05/21 12:54:25 raeburn Exp $ -->
 
 <!--
 
@@ -1262,6 +1262,8 @@ Plot_curve.problem;
 Plot_curve.problem.meta;
 Plot_data.problem;
 Plot_data.problem.meta;
+Rnumerical.problem;
+Rnumerical.problem.meta;
 RadioResponse.problem;
 RadioResponse.problem.meta;
 RandomLabelExample.problem;
@@ -1291,6 +1293,8 @@ SimpleMatching.problem;
 SimpleMatching.problem.meta;
 SimpleMathResponse.problem;
 SimpleMathResponse.problem.meta;
+SimpleMathResponseR.problem;
+SimpleMathResponseR.problem.meta;
 SimpleRank.problem;
 SimpleRank.problem.meta;
 SimpleTrueFalse.problem;
@@ -1543,6 +1547,14 @@ small script to handle the start up of t
   </description>
 </file>
 <file>
+  <source>loncom/lonr</source>
+  <target dist='default'>home/httpd/perl/lonr</target>
+  <categoryname>script</categoryname>
+  <description>
+    manages the existance and talking to the R processes
+  </description>
+</file>
+<file>
     <source>loncom/request_ssl_key.sh</source>
     <target dist='default'>home/httpd/lonCerts/request_ssl_key.sh</target>
     <categoryname>script</categoryname>
@@ -2337,15 +2349,6 @@ The PDF Domain Manual
     Examples for using &EXT problem metadata
   </description>
 </file>
-<file>
-  <source>loncom/interface/lontemplate.pm</source>
-  <target dist='default'>home/httpd/lib/perl/Apache/lontemplate.pm</target>
-  <categoryname>handler</categoryname>
-  <description>
-    Handler to create templates
-  </description>
-  <status>works/unverified</status>
-</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/html/adm/help/gif/</sourcedir>
@@ -4254,6 +4257,14 @@ The handler displays messages, has routi
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/courseprefs.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/courseprefs.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for displaying/modifying course configuration
+  </description>
+</file>
+<file>
 <source>loncom/homework/hint.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/hint.pm</target>
 <categoryname>handler</categoryname>
@@ -4810,6 +4821,15 @@ handles request to the CAPA homework pro
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/lonr.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonr.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    routines to simplify talking to the R client
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/Safe.pm</source>
 <target dist='default'>home/httpd/lib/perl/Safe.pm</target>
 <categoryname>handler</categoryname>
@@ -5398,6 +5418,14 @@ A blank page with very minimal HTML stru
 A blank page which calls drawwindow in its opener after being loaded.
 </description>
 </file>
+<file>
+<source>loncom/includepsheader.ps</source>
+<target dist='default'>home/httpd/lib/includepsheader.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+Extra header for dvips
+</description>
+</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>rat/images/</sourcedir>
@@ -5553,12 +5581,7 @@ accessbutton.gif;
 accessbutton_de.gif;
 accessbutton_pt.gif;
 angry.gif;
-arrow.closed.gif;
-arrow.open.gif;
-arrow.up.gif;
 arrow_up.gif;
-arrow_white.png;
-avi.gif;
 baeh.gif;
 bigsmile.gif;
 branch.gif;
@@ -5610,7 +5633,6 @@ jpg.gif;
 jpg_big.gif;
 latex.gif;
 library.gif;
-lightGreyBG.png;
 lipsrsealed.gif;
 lite.gif;
 liteani.gif;
@@ -5623,7 +5645,6 @@ lonhelplogos.gif;
 lonhelptop.gif;
 lonlogo.gif;
 lonlogos.gif;
-lonUtilityIcon.png;
 lowerleft.gif;
 lowerright.gif;
 mailbkgrd.gif;
@@ -5635,8 +5656,6 @@ mov.gif;
 mov_big.gif;
 move_up.gif;
 move_down.gif;
-mpeg.gif;
-mpg.gif;
 navmap.correct.gif;
 navmap.partial.gif;
 navmap.ellipsis.gif;
@@ -5664,9 +5683,6 @@ problem_big.gif;
 ps.gif;
 ps_big.gif;
 rolleyes.gif;
-qt.gif;
-qti.gif;
-qtm.gif;
 quill.gif;
 quiz.gif;
 quiz_big.gif;
@@ -5677,7 +5693,6 @@ server.gif;
 server_big.gif;
 shocked.gif;
 smiley.gif;
-spreadsheet.gif;
 srvbad.gif;
 srvempty.gif;
 srvgood.gif;
@@ -5691,7 +5706,6 @@ task_big.gif;
 tex.gif;
 tex_big.gif;
 tth.gif;
-text.gif;
 txt.gif;
 txt_big.gif;
 unknown.gif;
@@ -5718,7 +5732,6 @@ whitespace7.gif;
 whitespace8.gif;
 whitespace9.gif;
 wink.gif;
-wmv.gif;
 xls.gif;
 xls_big.gif;
 xml.gif;
@@ -6393,8 +6406,6 @@ ccat.gif;
 ccrs.gif;
 chat.gif;
 chrt.gif;
-close-all-folders.gif;
-close-navigation.gif;
 clst.gif;
 com.gif;
 conf.gif;
@@ -6425,15 +6436,12 @@ ledsend.gif;
 list.gif;
 logout.gif;
 mail.gif;
-mark-discussionentries-read.gif;
 mcrs.gif;
 mrk.gif;
 nav.gif;
 new.gif;
 next.gif;
 nothumb.gif;
-open-all-folders.gif;
-open-first-problem.gif;
 parm.gif;
 pcstr.gif;
 pgrd.gif;
@@ -6448,16 +6456,14 @@ reload.gif;
 remotebg.gif;
 res.gif;
 roles.gif;
+rsrv.gif;
 rtrv.gif;
 sbkm.gif;
 sctr.gif;
-show-all.gif;
-show-incomplete-problems.gif;
 spacer.gif;
 sprs.gif;
 src.gif;
 srvr.gif;
-start-navigation.gif;
 stat.gif;
 subm.gif;
 title.gif;
@@ -6504,6 +6510,7 @@ parm.png;
 port.png;
 prt.png;
 rcrs.png;
+rsrv.png;
 sbkm.png;
 src.png;
 srvr.png;
@@ -6523,6 +6530,7 @@ res.png;
 rtrv.png;
 sctr.png;
 stat.png;
+pdfupload.png;
 </filenames>
 </fileglob>
 <fileglob>
@@ -6532,43 +6540,6 @@ stat.png;
 <categoryname>graphic file</categoryname>
 <description>graphical icons used in submenus</description>
 <filenames>
-addClickerInfoFile.png;
-comblock.png;
-contact-new.png;
-coprplot.png;
-dialog-information.png;
-document-open.png;
-document-properties.png;
-edit-copy.png;
-edit-find.png;
-edit-find-replace.png;
-edit-redo.png;
-edit-select-all.png;
-edit-undo.png;
-emblem-photos.png;
-emblem-readonly.png;
-emblem-system.png;
-folder-new.png;
-format-justify-fill.png;
-fromfile.png;
-list-add.png;
-mail-message-new.png;
-mail-reply-all.png;
-mail-reply-sender.png;
-messalog.png;
-network-wireless.png;
-network-workgroup.png;
-uploadscores.png;
-preferences-desktop-font.png;
-preferences-desktop-locale.png;
-preferences-desktop-remote-desktop.png;
-preferences-desktop-theme.png;
-preferences-desktop-wallpaper.png;
-preferences-system-windows.png;
-start-here.png;
-subtimpl.png;
-system-lock-screen.png;
-system-users.png;
 </filenames>
 </fileglob>
 <file>
@@ -7050,7 +7021,23 @@ of users, and (b) to display e-mail of t
     Handler for generation of a menu of links to server status utilities
   </description>
 </file>
-
+<file>
+  <source>loncom/interface/lonconfigsettings.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonconfigsettings.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Common routines for generating menus to set default configuration settings -  
+   for a domain or for a course.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpdfupload.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpdfupload.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Interface to upload a PDF form containing responses to problems entered offline using a PDF reader for storage as submissions.
+  </description>
+</file>
 <file>
   <source>loncom/interface/lonpopulate.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonpopulate.pm</target>
@@ -7152,6 +7139,7 @@ modify_config_files.pl;
 parse_scantron.pl;
 seed_accesscount.pl;
 stress.pl;
+testkerberos.pl;
 unescape.pl;
 user_login_count.pl;
 </filenames>