--- doc/loncapafiles/loncapafiles.lpml	2007/12/04 18:08:53	1.562
+++ doc/loncapafiles/loncapafiles.lpml	2012/04/30 13:51:34	1.675.4.39.2.8
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.562 2007/12/04 18:08:53 albertel Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.675.4.39.2.8 2012/04/30 13:51:34 raeburn Exp $ -->
 
 <!--
 
@@ -98,6 +98,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>configurable</abbreviation>
 </category>
+<category name="www conf" type="runtime">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>configurable</abbreviation>
+</category>
+<category name="www conf" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>configurable</abbreviation>
+</category>
 <category name="script" type="runtime">
   <chmod dist='default'>0500</chmod><chown dist='default'>www:www</chown>
   <abbreviation>script</abbreviation>
@@ -114,6 +122,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0400</chmod><chown dist='default'>www:www</chown>
   <abbreviation>graphicfile</abbreviation>
 </category>
+<category name="lexicon file" type="runtime">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>lexicon</abbreviation>
+</category>
+<category name="lexicon file" type="development">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>lexicon</abbreviation>
+</category>
 <category name="doc" type="runtime">
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>systemfile</abbreviation>
@@ -178,6 +194,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0700</chmod><chown dist='default'>www:www</chown>
   <abbreviation>directory</abbreviation>
 </category>
+<category name="pdf manual" type="runtime">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>manual</abbreviation>
+</category>
+<category name="pdf manual" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>manual</abbreviation>
+</category>
 </categories>
 <rpm>
   <rpmSummary>Basic files for running a LON-CAPA server.</rpmSummary>
@@ -234,10 +258,22 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf</targetdir>
+  <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2</targetdir>
   <categoryname>standard</categoryname>
   <description>web configuration files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>etc/httpd/conf/rewrites</targetdir>
+  <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd/rewrites</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2/rewrites</targetdir>
+  <categoryname>standard</categoryname>
+  <description>
+  default configuration files to enable/disable http:// -> https:// rewrites
+  </description>
+</directory>
+<directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/pam.d</targetdir>
   <categoryname>standard</categoryname>
@@ -247,56 +283,56 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian'>etc/init.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian'>etc/rc0.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian'>etc/rc1.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian'>etc/rc2.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian'>etc/rc3.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian'>etc/rc4.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian'>etc/rc5.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian'>etc/rc6.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
@@ -325,6 +361,12 @@ echo '**********************************
   <description>perl scripts for debugging the LON-CAPA system</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/perl/manage_dns</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>perl scripts for cluster table management on LON-CAPA DNS servers</description>
+</directory>
+<directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl/logs</targetdir>
   <categoryname>server standard</categoryname>
@@ -363,6 +405,18 @@ Used by lond parent to check if children
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/captchaspool</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for temporary storage of Captcha images</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/captchadb</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for temporary storage of Captcha codes</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA software modules and
@@ -457,6 +511,30 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/images</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>images directory for learn-physics</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/images/login</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>directory for images for learn-physics log-in page</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/css</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>css directory for learn-physics</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/css/relate</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>css directory for learn-physics</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm</targetdir>
   <categoryname>server readonly</categoryname>
   <description>unauthenticated resources</description>
@@ -493,6 +571,12 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/geogebra</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>GeoGebra files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/jsMath</targetdir>
   <categoryname>server readonly</categoryname>
   <description>jsMath support files</description>
@@ -517,6 +601,84 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/ckeditor</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Rich Text Editor</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/js</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- js files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/images</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css images</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet directory and popups</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet classes</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/HotEqn</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet HotEqn classes and jar</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/Display</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet display</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/lang</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet languages</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/formats</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet classes formats (LaTeX, Maxima, etc)</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/helper</targetdir>
   <categoryname>server readonly</categoryname>
   <description>XML specifications for helpers</description>
@@ -723,6 +885,7 @@ are viewable over the world-wide web</de
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
   <targetdir dist='redhat8 redhat9'>usr/lib/perl5/site_perl/5.8.0</targetdir>
+  <targetdir dist='debian5'>usr/local/lib/perl/5.10.0</targetdir>
   <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
@@ -805,7 +968,7 @@ each list element consists of only two s
 <file>
 <source>loncom/loncapa.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa.conf</target>
-<target dist='sles10 suse10.1 suse10.2'>etc/apache2/loncapa.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa.conf</target>
 <categoryname>conf</categoryname>
 <description>
 <p>
@@ -845,10 +1008,10 @@ MySQL database</td></tr>
 </table>
 </note>
 </file>
-<file>
+<file type="postaboutversion">
 <source>loncom/loncapa_apache.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_apache.conf</target>
-<target dist='sles10 suse10.1 suse10.2'>etc/apache2/loncapa_apache.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_apache.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 The goal of this file is to implement all LON-CAPA specific
@@ -868,7 +1031,7 @@ the www@localhost MySQL password, and br
 <file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
-<target dist='sles10 suse10.1 suse10.2'>etc/apache2/startup.pl</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/startup.pl</target>
 <categoryname>static conf</categoryname>
 <description>
 This file provides initializations for perl handlers.  It adjusts what
@@ -877,6 +1040,49 @@ well as causing the Apache module to be
 <tt>startup.pl</tt> is invoked by <tt>loncapa_apache.conf</tt>.
 </description>
 </file>
+<link>
+<linkto>etc/apache2</linkto>
+<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>
+etc/apache2/conf
+</target>
+<categoryname>symbolic link</categoryname>
+<description>
+symbolic link to directory /etc/apache2 from /etc/apache2/conf
+</description>
+</link>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_off.conf</source>
+<target dist='default'>etc/httpd/conf/loncapa_rewrite.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_rewrite.conf</target>
+<categoryname>conf</categoryname>
+<description>
+Default rewrite file.
+Default is to disable rewriting of external requests for http:// to https://
+by setting: RewriteEngine off
+</description>
+</file>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_on.conf</source>
+<target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/rewrites/loncapa_rewrite_on.conf</target>
+<categoryname>static conf</categoryname>
+<description>
+File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to enable rewriting of
+external requests for http:// to https://
+</description>
+</file>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_off.conf</source>
+<target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/rewrites/loncapa_rewrite_off.conf</target>
+<categoryname>static conf</categoryname>
+<description>
+File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to disable rewriting of
+external requests for http:// to https://
+</description>
+</file>
 <file>
 <source>loncom/thesaurus/thesaurus.db</source>
 <target dist='default'>home/httpd/lonTabs/thesaurus.db</target>
@@ -999,6 +1205,14 @@ utility cgi script to view status of per
   </description>
 </file>
 <file>
+  <source>loncom/cgi/lonauthcgi.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonauthcgi.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides routines used in authorization of server status CGI scripts 
+  </description>
+</file>
+<file>
 <source>loncom/cgi/graph.png</source>
 <target dist='default'>home/httpd/cgi-bin/graph.png</target>
 <categoryname>script</categoryname>
@@ -1163,12 +1377,18 @@ home/httpd/html/res/adm/includes/templat
 Template files for generating new resources.
 </description>
 <filenames>
+answerdependent.problem;
+answerdependent.problem.meta;
 blank.library;
 blank.library.meta;
 blank.problem;
 blank.problem.meta;
 blank.task;
 blank.task.meta;
+dynamicgraph.problem;
+dynamicgraph.problem.meta;
+extreme.problem;
+extreme.problem.meta;
 simple.task;
 simple.task.meta;
 multiple_instance.task;
@@ -1181,12 +1401,26 @@ optional_criteria.task;
 optional_criteria.task.meta;
 ClickImageExample.problem;
 ClickImageExample.problem.meta;
+customhints.problem;
+customhints.problem.meta;
+custompartial.problem;
+custompartial.problem.meta;
 CustomResponse.problem;
 CustomResponse.problem.meta;
+customunit.problem;
+customunit.problem.meta;
 Essay.problem;
 Essay.problem.meta;
 examupload.problem;
 examupload.problem.meta;
+functionplotone.problem;
+functionplotone.problem.meta;
+functionplottwo.problem;
+functionplottwo.problem.meta;
+functionplotback.problem;
+functionplotback.problem.meta;
+functionplotvector.problem;
+functionplotvector.problem.meta;
 HintFormula.problem;
 HintFormula.problem.meta;
 HintMathResponse.problem;
@@ -1195,15 +1429,24 @@ man1.jpg;
 man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
+numPrePro.problem;
+numPrePro.problem.meta;
 Plot.problem.meta;
 Plot_curve.problem;
 Plot_curve.problem.meta;
 Plot_data.problem;
 Plot_data.problem.meta;
+Rnumerical.problem;
+Rnumerical.problem.meta;
 RadioResponse.problem;
 RadioResponse.problem.meta;
 RandomLabelExample.problem;
 RandomLabelExample.problem.meta;
+randomvalueradio.problem;
+randomvalueradio.problem.meta;
+sampleexternal.problem;
+sampleexternal.problem.meta;
+sampleexternal.pl;
 SelectFromOptions-4ConceptGoups.problem;
 SelectFromOptions-4ConceptGoups.problem.meta;
 SelectFromOptions-5ConceptGoups.problem;
@@ -1225,16 +1468,26 @@ SimpleFormulaCAS.problem;
 SimpleFormulaCAS.problem.meta;
 StringResponse.problem;
 StringResponse.problem.meta;
+stringPrePro.problem;
+stringPrePro.problem.meta;
 SimpleMatching.problem;
 SimpleMatching.problem.meta;
+SimpleMathResponse.problem;
+SimpleMathResponse.problem.meta;
+SimpleMathResponseR.problem;
+SimpleMathResponseR.problem.meta;
 SimpleRank.problem;
 SimpleRank.problem.meta;
 SimpleTrueFalse.problem;
 SimpleTrueFalse.problem.meta;
 organic.problem;
 organic.problem.meta;
+organic_hint.problem;
+organic_hint.problem.meta;
 reaction.problem;
-reaction.problem.meta
+reaction.problem.meta;
+reaction_hint.problem;
+reaction_hint.problem.meta
 </filenames>
 </fileglob>
 
@@ -1304,6 +1557,24 @@ Descriptive list of abbreviations used i
 and privileges available in the network with function
 </description>
 </file>
+<file>
+<source>loncom/managers.tab</source>
+<target dist='default'>home/httpd/lonTabs/managers.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+List of machines allowed to pass along updates to dns_hosts.tab and dns_domain.tab
+</description>
+</file>
+<file>
+<source>loncom/misc/releaseslist.xml</source>
+<target dist='default'>home/httpd/lonTabs/releaseslist.xml</target>
+<categoryname>static conf</categoryname>
+<description>
+XML specification of LON-CAPA version required for certain parameters,
+response types and course containers. Used to determine if a course
+needs a minimum LON-CAPA version to function correctly.
+</description>
+</file>
 
 <file type="private">
   <source>loncom/hosts.tab</source>
@@ -1341,6 +1612,25 @@ List of all domains in the LON-CAPA netw
 </file>
 
 <file>
+  <source>loncom/loncaparevs.tab</source>
+  <target dist='default'>home/httpd/lonTabs/loncaparevs.tab</target>
+  <categoryname>www conf</categoryname>
+  <description>
+File holds LON-CAPA version installed on all servers in the LON-CAPA network. Updated
+ by loncron. 
+  </description>
+</file>
+
+<file>
+  <source>loncom/serverhomeIDs.tab</source>
+  <target dist='default'>home/httpd/lonTabs/serverhomeIDs.tab</target>
+  <categoryname>www conf</categoryname>
+  <description>
+File holds paired data -- hostname:lonHostID for all servers in the LON-CAPA network (useful for determining which domain should control server settings for a multi-domain server). Updated by loncron.
+  </description>
+</file>
+
+<file>
 <source>loncom/spare.tab</source>
 <target dist='default'>home/httpd/lonTabs/spare.tab</target>
 <categoryname>conf</categoryname>
@@ -1437,6 +1727,15 @@ Batch script for removing files not acce
 </description>
 </file>
 <file>
+<source>loncom/misc/refresh_courseids_db.pl</source>
+<target dist='default'>home/httpd/perl/refresh_courseids_db.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for refreshing course information in aggregating GDBM
+file: nohist_courseids.db found in /home/httpd/lonUsers on library servers.
+</description>
+</file>
+<file>
 <source>loncom/debugging_tools/seed_accesscount.pl</source>
 <target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
 <categoryname>script</categoryname>
@@ -1463,14 +1762,6 @@ propagate the ids in ids.db to all cours
   </description>
 </file>
 <file>
-<source>loncom/lonhttpd</source>
-<target dist='default'>home/httpd/perl/lonhttpd</target>
-<categoryname>script</categoryname>
-<description>
-Small fry httpd on port 8080
-</description>
-</file>
-<file>
 <source>loncom/lonmemcached</source>
 <target dist='default'>home/httpd/perl/lonmemcached</target>
 <categoryname>script</categoryname>
@@ -1487,6 +1778,14 @@ small script to handle the start up of t
   </description>
 </file>
 <file>
+  <source>loncom/lonr</source>
+  <target dist='default'>home/httpd/perl/lonr</target>
+  <categoryname>script</categoryname>
+  <description>
+    manages the existance and talking to the R processes
+  </description>
+</file>
+<file>
     <source>loncom/request_ssl_key.sh</source>
     <target dist='default'>home/httpd/lonCerts/request_ssl_key.sh</target>
     <categoryname>script</categoryname>
@@ -1562,6 +1861,21 @@ loncom/build/CHECKRPMS
 <description>CGI script that shows users currently on machine</description>
 </file>
 <file>
+<source>loncom/cgi/listdomconfig.pl</source>
+<target dist='default'>home/httpd/cgi-bin/listdomconfig.pl</target>
+<categoryname>script</categoryname>
+<description>CGI script to display domain configuration as plain text.
+For use on the primary library server for a domain. Access control uses
+routines in lonauthcgi.pm
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/sampleexternal.pl</source>
+<target dist='default'>home/httpd/cgi-bin/sampleexternal.pl</target>
+<categoryname>script</categoryname>
+<description>Sample External Response Script</description>
+</file>
+<file>
 <source>loncom/loncron</source>
 <target dist='default'>home/httpd/perl/loncron</target>
 <categoryname>script</categoryname>
@@ -1639,6 +1953,16 @@ user passwords.
 <status>being updated</status>
 </file>
 <file>
+<source>loncom/lcinstallfile</source>
+<target dist='default'>home/httpd/perl/lcinstallfile</target>
+<categoryname>setuid script</categoryname>
+<description>
+Set uid file that allows lond to install files in 
+lonTab which is normally owned by root.
+</description>
+<status>under construction</status>
+</file>
+<file>
 <source>loncom/pwchange</source>
 <target dist='default'>home/httpd/perl/pwchange</target>
 <categoryname>setuid script</categoryname>
@@ -1669,6 +1993,25 @@ set according to the user's authenticati
 <status>New file</status>
 </file>
 <file>
+<source>loncom/lciptables</source>
+<target dist='default'>home/httpd/perl/lciptables</target>
+<categoryname>setuid script</categoryname>
+<description>
+Calls iptables to update firewall settings for port used for internal
+LON-CAPA communication to receive traffic from other servers in cluster
+</description>
+<status>New file</status>
+</file>
+<file>
+<source>loncom/lchttpdlogs</source>
+<target dist='default'>home/httpd/perl/lchttpdlogs</target>
+<categoryname>setuid script</categoryname>
+<description>
+script called by loncron to tail latest web server access and error logs.
+</description>
+<status>works/verified</status>
+</file>
+<file>
 <source>loncom/lcuserdel</source>
 <target dist='default'>home/httpd/perl/lcuserdel</target>
 <categoryname>setuid script</categoryname>
@@ -1722,7 +2065,7 @@ HTTPi webserver license
 HTTPi webserver readme 
 </description>
 </file>
-<file>
+<file type="postaboutversion">
 <source>loncom/license/about.html</source>
 <target dist='default'>home/httpd/html/adm/about.html</target>
 <categoryname>interface file</categoryname>
@@ -1807,6 +2150,14 @@ Different configs for scantron input fil
 </description>
 </file>
 <file>
+<source>loncom/homework/default_scantronformat.tab</source>
+<target dist='default'>home/httpd/lonTabs/default_scantronformat.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+Default configurations for scantron input files.
+</description>
+</file>
+<file>
 <source>loncom/publisher/packages.tab</source>
 <target dist='default'>home/httpd/lonTabs/packages.tab</target>
 <categoryname>static conf</categoryname>
@@ -1968,6 +2319,24 @@ Handler to pick a courseid from a list o
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonpickauthor.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickauthor.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for a DC to pick an author from a list of authors in the domain for an ad hoc CA role
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickuser.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickuser.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a user from a directory search
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonbulletin.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonbulletin.pm</target>
 <categoryname>handler</categoryname>
@@ -2063,6 +2432,14 @@ buildMakeWrapper
 </dependencies>
 </file>
 <file>
+<source>loncom/html/adm/help/help.png</source>
+<target dist='default'>home/httpd/html/adm/help/help.png</target>
+<categoryname>interface file</categoryname>
+<description>
+help icon
+</description>
+</file>
+<file>
 <source>loncom/html/adm/help/abouthelp.html</source>
 <target dist='default'>home/httpd/html/adm/help/abouthelp.html</target>
 <categoryname>interface file</categoryname>
@@ -2101,6 +2478,17 @@ manual online, with a somewhat clumsy in
 <status>works/unverified</status>
 </file>
 <file>
+<source>doc/help/domain.manual.access.tex</source>
+<target dist='default'>home/httpd/html/adm/help/tex/domain.manual.access.tex
+</target>
+<categoryname>interface file</categoryname>
+<description>
+The pseudo-LaTeX file to allow people to read the domain coordination
+manual online, with a somewhat clumsy interface.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/help/author.manual.ps</source>
 <target dist='default'>home/httpd/html/adm/help/author.manual.ps</target>
 <categoryname>interface file</categoryname>
@@ -2123,7 +2511,7 @@ loncom/build/help_graphics_converter.pl
 <file>
 <source>doc/help/author.manual.pdf</source>
 <target dist='default'>home/httpd/html/adm/help/author.manual.pdf</target>
-<categoryname>handler</categoryname>
+<categoryname>pdf manual</categoryname>
 <description>
 The PDF Author's Manual
 </description>
@@ -2152,13 +2540,42 @@ loncom/build/help_graphics_converter.pl
 <file>
 <source>doc/help/course.manual.pdf</source>
 <target dist='default'>home/httpd/html/adm/help/course.manual.pdf</target>
-<categoryname>interface file</categoryname>
+<categoryname>pdf manual</categoryname>
 <description>
 The PDF Course Manual
 </description>
 <status>works/unverified</status>
 </file>
 <file>
+<source>doc/help/domain.manual.ps</source>
+<target dist='default'>home/httpd/html/adm/help/domain.manual.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+The postscript Domain Manual
+</description>
+<status>works/unverified</status>
+<dependencies>
+doc/help/domain.manual.texxml;
+doc/help/latexSplitter.py;
+doc/help/rebuildLabelHash.pl;
+doc/help/render.texxml.pl;
+doc/help/simpleEdit.py;
+doc/help/texxml2indextex.pl;
+doc/help/texxml2latex.pl;
+loncom/build/buildHelp.sh;
+loncom/build/help_graphics_converter.pl
+</dependencies>
+</file>
+<file>
+<source>doc/help/domain.manual.pdf</source>
+<target dist='default'>home/httpd/html/adm/help/domain.manual.pdf</target>
+<categoryname>pdf manual</categoryname>
+<description>
+The PDF Domain Manual
+</description>
+<status>works/unverified</status>
+</file>
+<file>
   <source>loncom/html/adm/help/ext_examples.html</source>
   <target dist='default'>home/httpd/html/adm/help/ext_examples.html</target>
   <categoryname>interface file</categoryname>
@@ -2206,6 +2623,15 @@ The PDF Course Manual
     Examples for using &EXT problem metadata
   </description>
 </file>
+<file>
+  <source>loncom/interface/lontemplate.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lontemplate.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler to create templates
+  </description>
+  <status>works/unverified</status>
+</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/html/adm/help/gif/</sourcedir>
@@ -2233,18 +2659,52 @@ LONCAPA_Network_Diagram2.gif;
 LONCAPA_Network_Diagram.gif;
 Map_Example.gif;
 Resource_Assembly.gif;
+aboutme.gif;
+addClickerInfoFile.gif;
+anno.gif;
+anot.gif;
+anot2.gif;
 authorRemote.gif;
+bchat.gif;
+blog.gif;
+catalog.gif;
+ccat.gif;
+chat.gif;
+chrt.gif;
+com.gif;
 constructionSpace.gif;
 constructionSpaceForPublishing.gif;
+coprplot.gif;
+cprv.gif;
 creatingANewCourse.gif;
 creatingNewProblemResource.gif;
+crsconf.gif;
+docs.gif;
+document-open.gif;
+document-properties.gif;
+dump.gif;
 dynamic_piecewise.gif;
 dynamic_piecewise2.gif;
 dynamic_plot.gif;
 dynamic_plot2.gif;
+edit-find-replace.gif;
+edit-redo.gif;
+edit-undo.gif;
+emblem-photos.gif;
+eval.gif;
+extres.gif;
+fdbk.gif;
+feedback.gif;
 formulaResponse.gif;
+FPRexamples.gif;
+fromfile.gif;
+grds.gif;
+grps.gif;
+list-add.gif;
 login.gif;
 lonhelpheader.gif;
+mail-message-new.gif;
+mail-reply-all.gif;
 mainCourseDocuments.gif;
 mapAdvancedEditorNew.gif;
 mapClickedStart.gif;
@@ -2260,19 +2720,56 @@ mapSecondWindowSecondResource.gif;
 mapSimpleEditor.gif;
 mapStraightened.gif;
 mapTwoResources.gif;
+messalog.gif;
+mngcu.gif;
+nav.gif;
+navigation.gif;
+network-workgroup.gif;
+new.gif;
 numericalResponse1.gif;
 numericalResponseEditor.gif;
 numericalResponseSlopeProblem.gif;
 numericalResponseVarInText.gif;
 optionResponseEditing.gif;
 optionResponseProblem.gif;
+page.gif;
+parm.gif;
+pgrd.gif;
+port.gif;
+pref.gif;
+preferences-desktop-font.gif;
+preferences-desktop-locale.gif;
+preferences-desktop-theme.gif;
+prt.gif;
 publishMetadata.gif;
 radioResponse2.gif;
 radioResponseHint.gif;
+rcrs.gif;
+res.gif;
+resversion.gif;
+roles.gif;
+rsrv.gif;
+scoreupfrm.gif;
+sctr.gif;
+self_enroll.gif;
+simple.gif;
+simpprob.gif;
 smallHelp.gif;
 spreadsheet_hierarchy.gif;
+sprs.gif;
+src.gif;
+stat.gif;
 stringResponseEditor.gif;
 studentInterface.gif;
+subdocs.gif;
+subtimpl.gif;
+survey_rep.gif;
+syllabus.gif;
+system-users.gif;
+uploadscores.gif;
+uplusr.gif;
+vbkm.gif;
+verify.gif;
 iclicker.gif;
 interwrite1.gif;
 interwrite2.gif;
@@ -2308,18 +2805,52 @@ LONCAPA_Network_Diagram2.eps;
 LONCAPA_Network_Diagram.eps;
 Map_Example.eps;
 Resource_Assembly.eps;
+aboutme.eps;
+addClickerInfoFile.eps;
+anno.eps;
+anot.eps;
+anot2.eps;
 authorRemote.eps;
+bchat.eps;
+blog.eps;
+catalog.eps;
+ccat.eps;
+chat.eps;
+chrt.eps;
+com.eps;
 constructionSpace.eps;
 constructionSpaceForPublishing.eps;
+coprplot.eps;
+cprv.eps;
 creatingANewCourse.eps;
 creatingNewProblemResource.eps;
+crsconf.eps;
+docs.eps;
+document-open.eps;
+document-properties.eps;
+dump.eps;
 dynamic_piecewise.eps;
 dynamic_piecewise2.eps;
 dynamic_plot.eps;
 dynamic_plot2.eps;
+edit-find-replace.eps;
+edit-redo.eps;
+edit-undo.eps;
+emblem-photos.eps;
+eval.eps;
+extres.eps;
+fdbk.eps;
+feedback.eps;
 formulaResponse.eps;
+FPRexamples.eps;
+fromfile.eps;
+grds.eps;
+grps.eps;
+list-add.eps;
 lonhelpheader.eps;
 login.eps;
+mail-message-new.eps;
+mail-reply-all.eps;
 mainCourseDocuments.eps;
 mapAdvancedEditorNew.eps;
 mapClickedStart.eps;
@@ -2335,19 +2866,55 @@ mapSecondWindowSecondResource.eps;
 mapSimpleEditor.eps;
 mapStraightened.eps;
 mapTwoResources.eps;
+messalog.eps;
+mngcu.eps;
+nav.eps;
+navigation.eps;
+network-workgroup.eps;
+new.eps;
 numericalResponse1.eps;
 numericalResponseEditor.eps;
 numericalResponseSlopeProblem.eps;
 numericalResponseVarInText.eps;
 optionResponseEditing.eps;
 optionResponseProblem.eps;
+page.eps;
+parm.eps;
+pgrd.eps;
+port.eps;
+preferences-desktop-font.eps;
+preferences-desktop-locale.eps;
+preferences-desktop-theme.eps;
+prt.eps;
 publishMetadata.eps;
 radioResponse2.eps;
 radioResponseHint.eps;
+rcrs.eps;
+res.eps;
+resversion.eps;
+roles.eps;
+rsrv.eps;
+scoreupfrm.eps;
+sctr.eps;
+self_enroll.eps;
+simple.eps;
+simpprob.eps;
 smallHelp.eps;
 spreadsheet_hierarchy.eps;
+sprs.eps;
+src.eps;
+stat.eps;
 stringResponseEditor.eps;
 studentInterface.eps;
+subdocs.eps;
+subtimpl.eps;
+survey_rep.eps;
+syllabus.eps;
+system-users.eps;
+uploadscores.eps;
+uplusr.eps;
+vbkm.eps;
+verify.eps;
 iclicker.eps;
 interwrite1.eps;
 interwrite2.eps;
@@ -2404,7 +2971,7 @@ Authoring_ImageResponse.tex;
 Authoring_Input_Tags.tex;
 Authoring_Internal_Tags.tex;
 Authoring_Intro.tex;
-Authoring_M_Tag.tex;
+Authoring_Math_Editor.tex;
 Authoring_NumericalResponse.tex;
 Authoring_OptionResponse.tex;
 Authoring_Output_Tags.tex;
@@ -2490,12 +3057,43 @@ Course_Feedback_Addresses.tex;
 Course_Homework_Performance_Overview.tex;
 Course_Manually_Grade_Problem.tex;
 Course_Manual_Title_Page.tex;
+Course_Manage_Group.tex;
 Course_Maximum_Collaborators.tex;
 Course_Message_Access.tex;
 Course_Modify_Student_Data.tex;
 Course_Parameter_Levels.tex;
 Course_Parameter_Table_Mode.tex;
+Course_Prefs_Bridgetasks.tex;
+Course_Prefs_Display.tex;
+Course_Prefs_Grading.tex;
+Course_Prefs_Printouts.tex;
+Course_Prefs_Classlists.tex;
+Course_Prefs_Feedback.tex;
+Course_Prefs_Language.tex;
+Course_Prefs_Spreadsheet.tex;
+Course_Prefs_Discussions.tex;
+Course_Prefs_General.tex;
+Course_Prefs_Other.tex;
 Course_Problem_Weight.tex;
+Course_Requests.tex;
+Course_Request_Access_End.tex;
+Course_Request_Access_Start.tex;
+Course_Request_Autoadd.tex;
+Course_Request_Autodrop.tex;
+Course_Request_Category.tex;
+Course_Request_Clone.tex;
+Course_Request_Crosslist.tex;
+Course_Request_Description.tex;
+Course_Request_Enroll_End.tex;
+Course_Request_Enroll_Start.tex;
+Course_Request_LCSection.tex;
+Course_Request_Personnel.tex;
+Course_Request_RegAccess_End.tex;
+Course_Request_RegAccess_Start.tex;
+Course_Request_Rolesection.tex;
+Course_Request_Sections.tex;
+Course_Roles.tex;
+Course_Self_Enrollment.tex;
 Course_Set_Start_End_Date.tex;
 Course_Setting_Parameters.tex;
 Course_Student_Grade_Override.tex;
@@ -2506,11 +3104,13 @@ Course_User_Parameter.tex;
 Course_View_Class_List.tex;
 Create_Course.tex;
 Creating_A_Course_Intro.tex;
+Creating_Domain_Coordinators.tex;
 Creating_Groups.tex;
 Creating_New_Content_Pages.tex;
 Creating_Online_Problems.tex;
 Creating_Radio_Response_Problems.tex;
 Custom_Response_Problems.tex;
+Deleting_Domain_Coordinators.tex;
 Developer_Manual_Title_Page.tex;
 Developer_Tutorial.tex;
 Distribute_Messages.tex;
@@ -2545,6 +3145,28 @@ Docs_String_Response.tex;
 Docs_Supplemental.tex;
 Docs_Uploading_From_Harddrive.tex;
 Docs_Verify_Content.tex;
+Domain_Configuration_Auto_Creation.tex;
+Domain_Configuration_Auto_Enrollment.tex;
+Domain_Configuration_Auto_Updates.tex;
+Domain_Configuration_Cataloging_Courses.tex;
+Domain_Configuration_Color_Schemes.tex;
+Domain_Configuration_Contact_Info.tex;
+Domain_Configuration_Course_Defaults.tex;
+Domain_Configuration_InstDirectory_Search.tex;
+Domain_Configuration_LangTZAuth.tex;
+Domain_Configuration_Login_Page.tex;
+Domain_Configuration_Quotas.tex;
+Domain_Configuration_Request_Courses.tex;
+Domain_Configuration_Scantron_Format.tex;
+Domain_Configuration_Server_Status.tex;
+Domain_Configuration_SSL.tex;
+Domain_Configuration_User_Creation.tex;
+Domain_Configuration_User_Modification.tex;
+Domain_Configuration_User_Sessions.tex;
+Domain_Coordination_Intro.tex;
+Domain_Coordination_Overview.tex;
+Domain_Crontab_Entries.tex;
+Domain_Manual_Title_Page.tex;
 Due_Date.tex;
 Edit_Syllabus.tex;
 Error.tex;
@@ -2565,12 +3187,25 @@ Feedback_Discussion.tex;
 Feedback_Policy.tex;
 Finding_Resources.tex;
 Foils.tex;
+Formula_Answers.tex;
+Formula_Editor.tex;
 Formula_Response_Adv_Intro.tex;
 Formula_Response_Example.tex;
 Formula_Response_Limitations.tex;
 Formula_Response_Problems.tex;
 Formula_Response_Sampling.tex;
 Formula_Tolerance.tex;
+Function_Plot_Response_Background_Plot.tex;
+Function_Plot_Response_Evaluation_Rule.tex;
+Function_Plot_Response_Rule_Set.tex;
+Function_Plot_Response_Elements.tex;
+Function_Plot_Response_Question.tex;
+Function_Plot_Response_Spline.tex;
+Function_Plot_Response_Custom_Rule.tex;
+Function_Plot_Response_Object.tex;
+Function_Plot_Response_Vector.tex;
+Function_Plot_Response_Vector_Rule.tex;
+Function_Plot_Response_Vector_Sum_Rule.tex;
 General_Intro.tex;
 Generation.tex;
 Grade_All.tex;
@@ -2593,12 +3228,25 @@ Guts_User_Dir.tex;
 Help.tex;
 Helper_Course_Initialization.tex;
 How_To_Edit_Existing_Content_Pages.tex;
+Institutional_Integration_Authentication.tex;
+Institutional_Integration_Course_Codes.tex;
+Institutional_Integration_Course_Requests.tex;
+Institutional_Integration_Format_Checks.tex;
+Institutional_Integration_Identity_Management.tex;
+Institutional_Integration_User_Categories.tex;
 Latex_Footer.tex;
 Latex_Header.tex;
 Leaving_Feedback.tex;
 Login_To_LON-CAPA.tex;
 Math_Response_Problems.tex;
+Maxima_Argument_Array.tex;
+Maxima_Libraries.tex;
 Metadata_Description.tex;
+Modify_Community_Owner.tex;
+Modify_Course_Defaultauth.tex;
+Modify_Course_Instcode.tex;
+Modify_Course_Owner.tex;
+Modify_Course_Quota.tex;
 Navigation_Screen.tex;
 Navmap_Host_Down.tex;
 NavMaps_MarkPosts_Read.tex;
@@ -2627,6 +3275,7 @@ Parameter_encrypturl.tex;
 Parameter_Helper.tex;
 Parameter_Manager.tex;
 Parameter_Overview.tex;
+Parameter_Set_Folder.tex;
 Part_Tag_Edit_Help.tex;
 Personal_Info_Page.tex;
 Physical_Units.tex;
@@ -2648,6 +3297,8 @@ Portfolio_ShareFile.tex;
 Prefs_About_Me.tex;
 Prefs_Forwarding.tex;
 Prefs_Language.tex;
+Prefs_Messages.tex;
+Prefs_Notification.tex;
 Prefs_Screen_Name_Nickname.tex;
 Print_Library.tex;
 Print_Options.tex;
@@ -2701,6 +3352,7 @@ Slot_ResourceParameter.tex;
 Slot_RestrictAvailibility.tex;
 Slot_SelectingField.tex;
 Slot_SpecifyProctors.tex;
+Some_Items_Were_Not_Submitted.tex;
 Spreadsheet_About.tex;
 Spreadsheet_Calculation.tex;
 Spreadsheet_Calculation_Time.tex;
@@ -2748,6 +3400,7 @@ Tolerance.tex;
 Uploaded_Templates_PublicView.tex;
 Uploaded_Templates_TextBoxes.tex;
 Uploading_File_Options.tex;
+Using_Clickers.tex;
 Variable_Naming_Conventions.tex;
 Variables_in_Scripts.tex;
 Variables_in_the_Answer_Block.tex;
@@ -2772,7 +3425,44 @@ German Tex files for the help system
 <filenames>
 About_Bombs.tex;
 About_Communication.tex;
+Auth_Options.tex;
+Authoring_Math_Editor.tex;
+Contextual_Help.tex;
+Cascading_Parameters.tex;
+Course_Convert_To_CSV.tex;
+Course_Create_Class_List.tex;
+Course_Self_Enrollment.tex;
+Docs_About_Bulletin_Board.tex;
+Docs_About_Group_Files.tex;
+Docs_About_My_Personal_Info.tex;
+Docs_About_Simple_Page.tex;
+Docs_About_Syllabus.tex;
+Docs_Adding_Course_Doc.tex;
+Docs_Adding_Folders.tex;
+Docs_Editing_Templated_Pages.tex;
+Docs_Navigate_Content.tex;
+Docs_Score_Upload_Form.tex;
+Docs_Verify_Content.tex;
+Formula_Editor.tex;
+General_Intro.tex;
+Generation.tex;
+Metadata_Description.tex;
+Navigation_Screen.tex;
+Parameter_Overview.tex;
+Problem_Parameters.tex;
+Publishing_Copyright.tex;
+Publishing_Keywords.tex;
+Quick_Grades_Possibly_Correct.tex;
+Ranking_Problems.tex;
+Receipt.tex;
+Search_Advanced.tex;
+Search_Basic.tex;
+Student_Intro.tex;
+Syllabus_ExtLink.tex;
+Table_Mode.tex;
 Tries.tex;
+Uploaded_Templates_PublicView.tex;
+Uploaded_Templates_TextBoxes.tex;
 </filenames>
 </fileglob>
 <fileglob>
@@ -2815,7 +3505,7 @@ rebuild_label_hash.sh
 </dependencies>
 </file>
 <fileglob>
-  <glob>*</glob>
+  <glob>*.*</glob>
   <sourcedir>loncom/html/adm/fonts/</sourcedir>
   <targetdir dist='default'>home/httpd/html/adm/fonts/</targetdir>
   <categoryname>interface file</categoryname>
@@ -2823,22 +3513,58 @@ rebuild_label_hash.sh
     Fonts for convertjme.pl
   </description>
   <filenames>
-AUTHORS;
-BUGS;
 DejaVuSerif-Roman.ttf;
 DejaVuSansMono-Bold.ttf;
 DejaVuSans.pfb;
 DejaVuSans.ttf;
 DejaVuSerif.pfb;
 DejaVuSerif.ttf;
-LICENSE;
-NEWS;
-README;
 status.txt;
 unicover.txt;
   </filenames>
 </fileglob>
 <file>
+<source>loncom/html/adm/fonts/AUTHORS</source>
+<target dist='default'>home/httpd/html/adm/fonts/AUTHORS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/fonts/BUGS</source>
+<target dist='default'>home/httpd/html/adm/fonts/BUGS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/LICENSE</source>
+<target dist='default'>home/httpd/html/adm/fonts/LICENSE</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/NEWS</source>
+<target dist='default'>home/httpd/html/adm/fonts/NEWS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/README</source>
+<target dist='default'>home/httpd/html/adm/fonts/README</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
 <source>loncom/interface/lonstatistics.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonstatistics.pm</target>
 <categoryname>handler</categoryname>
@@ -3242,6 +3968,24 @@ Internal routines for creating a clone o
   <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonrequestcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrequestcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows submission of course requests by users with the right to request them 
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/loncoursequeueadmin.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursequeueadmin.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Common routines for administration of queues containing user-submitted requests - either for self-enrollment in an existing course, or for creation of a new course.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/loncreateuser.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncreateuser.pm</target>
 <categoryname>handler</categoryname>
@@ -3256,7 +4000,16 @@ them roles.
 <target dist='default'>home/httpd/lib/perl/Apache/lonuserutils.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Common routines for user management
+Common routines for user management including upload of lists of users in different formats, and to automatically create users (if they do not exist already), assign them roles within the privileges of the uploader to create/edit users. Also the ability to generate filtered lists of users with specific roles, as determined by the privileges of the viewer.   
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/selfenroll.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/selfenroll.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Users with accounts in LON-CAPA can self-enroll in courses between specified start and end dates, if the course has been configured to allow it, and the user's domain/institutional type satisfy the settings for self-enrollment in the course.
 </description>
 <status>works/unverified</status>
 </file>
@@ -3305,7 +4058,7 @@ Localization class for Locale::Maketext
 <sourcedir>loncom/localize/localize/</sourcedir>
 <targetdir dist='default'>
 home/httpd/lib/perl/Apache/localize/</targetdir>
-<categoryname>static conf</categoryname>
+<categoryname>lexicon file</categoryname>
 <description>
 Translation files.
 </description>
@@ -3320,6 +4073,7 @@ fa.pm;
 ar.pm;
 es.pm;
 x_chef.pm;
+zh.pm;
 </filenames>
 </fileglob>
 <file>
@@ -3393,6 +4147,13 @@ Coordinates the response to clicking an
 Handles tags associated with showing a list of options.</description>
 </file>
 <file>
+<source>loncom/homework/functionplotresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/functionplotresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handles tags associated with function plots using GeoGebra.</description>
+</file>
+<file>
 <source>loncom/homework/outputtags.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/outputtags.pm</target>
 <categoryname>handler</categoryname>
@@ -3432,6 +4193,42 @@ smiles.gif
 
 <fileglob>
   <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/geogebra/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/geogebra/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    Geogebra, for functionplotresponse
+  </description>
+  <filenames>
+geogebra_algos.jar;
+geogebra_algos.jar.pack.gz;
+geogebra_javascript.jar;
+geogebra_javascript.jar.pack.gz;
+geogebra_cas.jar;
+geogebra_export.jar.pack.gz;
+geogebra.jar;
+geogebra_main.jar.pack.gz;
+geogebra_cas.jar.pack.gz;
+geogebra_gui.jar;
+geogebra.jar.pack.gz;
+geogebra_properties.jar;
+geogebra_export.jar;
+geogebra_gui.jar.pack.gz;
+geogebra_main.jar;
+geogebra_properties.jar.pack.gz;
+geogebra_usb.jar;
+geogebra_usb.jar.pack.gz;
+jlatexmath.jar;
+jlatexmath.jar.pack.gz;
+jlm_cyrillic.jar;
+jlm_cyrillic.jar.pack.gz;
+jlm_greek.jar;
+jlm_greek.jar.pack.gz;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
   <sourcedir>loncom/html/adm/jmol/</sourcedir>
   <targetdir dist='default'>home/httpd/html/adm/jmol/</targetdir>
   <categoryname>interface file</categoryname>
@@ -3471,7 +4268,105 @@ JmolApplet0_Viewer.jar;
     Dynamically converts JME strings into either a png or ps file.
   </description>
 </file>
-
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+Latex.html;
+MathML.html;
+Maxima.html;
+MaximaPopup.html;
+EditMathPopup.html;
+FCKEditMathPopup.html
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/classes/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+AbsoluteLayout.jar;
+jep.jar;
+Project.jar;
+Config.xml;
+jdom.jar;
+swing-layout-1.0.jar;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/HotEqn/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/HotEqn/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+HotEqn.class;
+HotEqn.jar;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/classes/Display/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/Display/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+MainApplet.class;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/classes/formats/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/formats/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+ASCIIMathML.xml;
+Latex.xml;
+MathML.xml;
+MoodleTex.xml;
+Maple.xml;
+Maxima.xml;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/classes/lang/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/lang/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+ca.xml;
+cz.xml;
+en.xml;
+fr.xml;
+no.xml;
+pt-br.xml;
+sv.xml;
+de.xml;
+es.xml;
+nl.xml;
+pl.xml;
+ru.xml;
+  </filenames>
+</fileglob>
 <fileglob>
   <glob>*.*</glob>
   <sourcedir>loncom/html/adm/jsMath/</sourcedir>
@@ -3521,8 +4416,8 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 </file>
 
 <file>
-  <source>loncom/html/adm/fckeditor/FCKeditor_2.4.3.tar.gz</source>
-  <target dist='default'>home/httpd/html/adm/fckeditor</target>
+  <source>loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz</source>
+  <target dist='default'>home/httpd/html/adm/ckeditor</target>
   <categoryname>script</categoryname>
   <description>
    GUI HTML Editor, scripted installation decompress the tarball and
@@ -3532,9 +4427,9 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 commands /home/httpd/html/
   </installscript>
   <dependencies>
-loncom/html/adm/fckeditor/commands;
-loncom/html/adm/fckeditor/FCKeditor_2.4.3.tar.gz;
-loncom/html/adm/fckeditor/loncapaconfig.js;
+loncom/html/adm/ckeditor/commands;
+loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz;
+loncom/html/adm/ckeditor/loncapaconfig.js;
   </dependencies>
 </file>
 
@@ -3605,6 +4500,58 @@ jsMath.js;
   </filenames>
 </fileglob>
 
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/js/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/js/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.6.2, UI version 1.8.16
+  </description>
+  <filenames>
+	jquery-1.6.2.min.js;
+	jquery-ui-1.8.16.custom.min.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/css/smoothness/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.6.2, UI version 1.8.16 -- stylesheets
+  </description>
+  <filenames>
+	jquery-ui-1.8.16.custom.css;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/css/smoothness/images/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/images/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.6.2, UI version 1.8.16 -- images for css.
+  </description>
+  <filenames>
+  	ui-bg_flat_0_aaaaaa_40x100.png;
+	ui-bg_flat_75_ffffff_40x100.png;
+	ui-bg_glass_55_fbf9ee_1x400.png;
+	ui-bg_glass_65_ffffff_1x400.png;
+	ui-bg_glass_75_dadada_1x400.png;
+	ui-bg_glass_75_e6e6e6_1x400.png;
+	ui-bg_glass_95_fef1ec_1x400.png;
+	ui-bg_highlight-soft_75_cccccc_1x100.png;
+	ui-icons_2e83ff_256x240.png;
+	ui-icons_222222_256x240.png;
+	ui-icons_454545_256x240.png;
+	ui-icons_888888_256x240.png;
+	ui-icons_cd0a0a_256x240.png;
+  </filenames>
+</fileglob>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -3796,6 +4743,14 @@ Handles the production of printable file
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/entities.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/entities.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Converts html/xml entities to latex.
+</description>
+</file>
+<file>
   <source>loncom/metadata_database/LONCAPA/lonmetadata.pm</source>
   <target dist='default'>home/httpd/lib/perl/LONCAPA/lonmetadata.pm</target>
   <categoryname>system file</categoryname>
@@ -3862,17 +4817,6 @@ Allows users with "mky" privileges to ge
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/londropadd.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/londropadd.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Allows course coordinators to upload courselists in different formats, and
-automatically create users (if they do not exist already), assign them the
-role of student in a course, and add them to the classlist.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/interface/lonviewclasslist.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonviewclasslist.pm</target>
 <categoryname>handler</categoryname>
@@ -3942,6 +4886,14 @@ The handler displays messages, has routi
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/courseprefs.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/courseprefs.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for displaying/modifying course configuration
+  </description>
+</file>
+<file>
 <source>loncom/homework/hint.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/hint.pm</target>
 <categoryname>handler</categoryname>
@@ -4347,6 +5299,24 @@ Tags Default Definition Module
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/lontable.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontable.pm</target>
+<categoryname>server standard</categoryname>
+<description>
+Table object
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/xml/lonlatextable.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonlatextable.pm</target>
+<categoryname>server standard</categoryname>
+<description>
+Simple subset replacement for LaTeX::Table
+</description>
+<status>works</status>
+</file>
+<file>
 <source>loncom/xml/run.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/run.pm</target>
 <categoryname>handler</categoryname>
@@ -4489,6 +5459,15 @@ handles request to the CAPA homework pro
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/lonr.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonr.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    routines to simplify talking to the R client
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/Safe.pm</source>
 <target dist='default'>home/httpd/lib/perl/Safe.pm</target>
 <categoryname>handler</categoryname>
@@ -4692,6 +5671,18 @@ loncom/build/pod2html.sh ../auth/loncacc
 </dependencies>
 </file>
 <file>
+<source>loncom/auth/lonstatusacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstatusacc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+This module provides access to server status - Apache's server-status and
+files in the /home/httpd/html/lon-status directory, for which it is invoked 
+by the URL-related pattern syntax:
+<tt>LocationMatch "^/+lon-status/.*"</tt>.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonauth.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonauth.pm</target>
 <categoryname>handler</categoryname>
@@ -4699,7 +5690,7 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/auth/lonlogin.pm</source>
+<source>modules/relate/lonlogin.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonlogin.pm</target>
 <categoryname>handler</categoryname>
 <description>login screen</description>
@@ -4720,6 +5711,13 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/lonipcheck.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonipcheck.pm</target>
+<categoryname>handler</categoryname>
+<description>Checks IP-based access control settings - disable subsequent PerlHandlers if client's IP is blocked</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/londatecheck.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londatecheck.pm</target>
 <categoryname>handler</categoryname>
@@ -4744,7 +5742,7 @@ loncom/build/pod2html.sh ../auth/loncacc
   <source>loncom/auth/migrateuser.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/migrateuser.pm</target>
   <categoryname>handler</categoryname>
-  <description>auto logsin a remote user</description>
+  <description>auto logs in a remote user</description>
   <status>works/unverified</status>
 </file>
 <file>
@@ -4958,7 +5956,7 @@ Domain information serving.
 <file>
 <source>loncom/mime.types</source>
 <target dist='default'>etc/httpd/conf/mime.types</target>
-<target dist='sles10 suse10.1 suse10.2'>etc/apache2/mime.types</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/mime.types</target>
 <categoryname>www static conf</categoryname>
 <description>Expanded mime.types</description>
 </file>
@@ -5058,6 +6056,14 @@ A blank page with very minimal HTML stru
 A blank page which calls drawwindow in its opener after being loaded.
 </description>
 </file>
+<file>
+<source>loncom/includepsheader.ps</source>
+<target dist='default'>home/httpd/lib/includepsheader.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+Extra header for dvips
+</description>
+</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>rat/images/</sourcedir>
@@ -5207,13 +6213,17 @@ logos and general widget icons
 <filenames>
 SMETE_white.gif;
 aboutlon.gif;
-aboutlon_pt.gif;
 aboutlon_de.gif;
+aboutlon_pt.gif;
 accessbutton.gif;
-accessbutton_pt.gif;
 accessbutton_de.gif;
+accessbutton_pt.gif;
 angry.gif;
+arrow.closed.gif;
+arrow.open.gif;
+arrow.up.gif;
 arrow_up.gif;
+avi.gif;
 baeh.gif;
 bigsmile.gif;
 branch.gif;
@@ -5236,6 +6246,23 @@ eps.gif;
 eps_big.gif;
 exam.gif;
 exam_big.gif;
+face-angel.png;
+face-angry.png;
+face-cool.png;
+face-crying.png;
+face-embarrassed.png;
+face-glasses.png;
+face-kiss.png;
+face-plain.png;
+face-quiet.png;
+face-raspberry.png;
+face-sad.png;
+face-sick.png;
+face-smile.png;
+face-smile-big.png;
+face-surprise.png;
+face-uncertain.png;
+face-wink.png;
 fillbottom.gif;
 fillleft.gif;
 fillright.gif;
@@ -5244,6 +6271,10 @@ folder_closed.gif;
 folder_opened.gif;
 folder_pointer_closed.gif;
 folder_pointer_opened.gif;
+food-cake.png;
+face-ninja.png;
+face-pirate.png;
+food-pizza.png;
 form.gif;
 form_big.gif;
 frowny.gif;
@@ -5251,6 +6282,7 @@ gif.gif;
 gif_big.gif;
 header.gif;
 header.png;
+heart.png;
 helpdesk.gif;
 helpgateway.gif;
 hrrm.gif;
@@ -5260,10 +6292,12 @@ html_big.gif;
 huh.gif;
 jar.gif;
 jar_big.gif;
+jpeg.gif;
 jpg.gif;
 jpg_big.gif;
 latex.gif;
 library.gif;
+lightGreyBG.png;
 lipsrsealed.gif;
 lite.gif;
 liteani.gif;
@@ -5276,6 +6310,7 @@ lonhelplogos.gif;
 lonhelptop.gif;
 lonlogo.gif;
 lonlogos.gif;
+lonUtilityIcon.png;
 lowerleft.gif;
 lowerright.gif;
 mailbkgrd.gif;
@@ -5287,6 +6322,8 @@ mov.gif;
 mov_big.gif;
 move_up.gif;
 move_down.gif;
+mpeg.gif;
+mpg.gif;
 navmap.correct.gif;
 navmap.partial.gif;
 navmap.ellipsis.gif;
@@ -5301,6 +6338,9 @@ navmap.folder.closed.gif;
 navmap.folder.open.nomanip.gif;
 navmap.folder.closed.nomanip.gif;
 neutral.gif;
+open.gif;
+opinion-agree.png;
+opinion-disagree.png;
 page.gif;
 page_big.gif;
 pdf.gif;
@@ -5314,6 +6354,10 @@ problem_big.gif;
 ps.gif;
 ps_big.gif;
 rolleyes.gif;
+rose.png;
+qt.gif;
+qti.gif;
+qtm.gif;
 quill.gif;
 quiz.gif;
 quiz_big.gif;
@@ -5324,18 +6368,24 @@ server.gif;
 server_big.gif;
 shocked.gif;
 smiley.gif;
+spreadsheet.gif;
 srvbad.gif;
 srvempty.gif;
 srvgood.gif;
 srvhalf.gif;
 srvnull.gif;
+stift.gif;
 survey.gif;
 survey_big.gif;
+tabbgleft.gif;
+tabbgright.gif;
 task.gif;
 task_big.gif;
 tex.gif;
 tex_big.gif;
 tth.gif;
+text.gif;
+transparent1x1.gif;
 txt.gif;
 txt_big.gif;
 unknown.gif;
@@ -5344,12 +6394,10 @@ upperleft.gif;
 upperright.gif;
 user.gif;
 user_big.gif;
-userauthentication.gif;
-userauthentication_pt.gif;
-userauthentication_de.gif;
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
+whitespace_21.gif;
 whitespace1.gif;
 whitespace10.gif;
 whitespace2.gif;
@@ -5361,6 +6409,7 @@ whitespace7.gif;
 whitespace8.gif;
 whitespace9.gif;
 wink.gif;
+wmv.gif;
 xls.gif;
 xls_big.gif;
 xml.gif;
@@ -5397,6 +6446,40 @@ subm_button.gif;
 subm_button.png;
 </filenames>
 </fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>modules/relate/images/login/</sourcedir>
+<targetdir dist='default'>home/httpd/html/images/login/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>
+Images for custom log-in page for learn-physics
+</description>
+<filenames>
+LCrelateheader_sm.png;
+bl_11_993333_ffffff.gif;
+bl_11_ffffff_e2e2e2.gif;
+br_11_993333_ffffff.gif;
+br_11_ffffff_e2e2e2.gif;
+lclogosm.gif;
+tlc_11_993333_ffffff.gif;
+tlc_11_ffffff_e2e2e2.gif;
+tr_11_993333_ffffff.gif;
+tr_11_ffffff_e2e2e2.gif;
+sponsors.png
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>modules/relate/css/relate/</sourcedir>
+<targetdir dist='default'>home/httpd/html/css/relate/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+CSS for learn-physics (relate domain)
+</description>
+<filenames>
+login.css;
+</filenames>
+</fileglob>
 <file>
 <source>loncom/xml/algebra/AlgParser.pm</source>
 <target dist='default'>home/httpd/lib/perl/AlgParser.pm</target>
@@ -5517,6 +6600,16 @@ entries.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/configuration/Firewall.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Firewall.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Provides methods to open and close firewall ports used for  
+for socket-based communication between LON-CAPA servers
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/ConfigFileEdit.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
 <categoryname>system file</categoryname>
@@ -5545,7 +6638,15 @@ modules/TexConvert/tthperl/commands
 <dependencies>
 commands;
 compiles/tth.so.i386;
-compiles/tth.so.x86_64
+compiles/tth.so.x86_64;
+compiles/tth.so.i386.perl.5.10;
+compiles/tth.so.x86_64.perl.5.10;
+compiles/tth.so.i386.perl.5.12;
+compiles/tth.so.x86_64.perl.5.12;
+compiles/tth.so.i386.perl.5.14;
+compiles/tth.so.x86_64.perl.5.14;
+compiles/tth.so.i386.debian5;
+compiles/tth.so.x86_64.debian5
 </dependencies>
 </file>
 <file>
@@ -5633,12 +6734,14 @@ loncom/cgi/mimeTeX/commands
 commands;
 gfuntype.c;
 gifsave.c;
+loncapanewcommands.h;
 mimetex.c;
 mimetex.h;
 mimetex.html;
 README;
 texfonts.h;
 LICENSE;
+VERSION;
 </dependencies>
 </file>
 <fileglob>
@@ -6011,29 +7114,25 @@ vbkm_pt.gif;
 <filenames>
 anno.gif;
 anot.gif;
+anot2.gif;
 back.gif;
 bchat.gif;
 bkm.gif;
 blog.gif;
-bl_step1.gif;
-bl_step2.gif;
-bl_step3.gif;
-bl_step4.gif;
-bl_step5.gif;
-bl_step6.gif;
-bl_step7.gif;
-bl_step8.gif;
-bl_step9.gif;
 brws.gif;
 catalog.gif;
+ccat.gif;
 ccrs.gif;
 chat.gif;
 chrt.gif;
+close-all-folders.gif;
+close-navigation.gif;
 clst.gif;
 com.gif;
 conf.gif;
 courses.gif;
 cprv.gif;
+crsconf.gif;
 cstr.gif;
 del.gif;
 dempty.gif;
@@ -6059,12 +7158,16 @@ ledsend.gif;
 list.gif;
 logout.gif;
 mail.gif;
+mark-discussionentries-read.gif;
 mcrs.gif;
 mrk.gif;
 nav.gif;
 new.gif;
 next.gif;
 nothumb.gif;
+open-all-folders.gif;
+open-first-problem.gif;
+pdfupload.gif;
 parm.gif;
 pcstr.gif;
 pgrd.gif;
@@ -6074,16 +7177,22 @@ pref.gif;
 prt.gif;
 pub.gif;
 qempty.gif;
+rcrs.gif;
 reload.gif;
 remotebg.gif;
 res.gif;
 roles.gif;
+rsrv.gif;
 rtrv.gif;
 sbkm.gif;
 sctr.gif;
+show-all.gif;
+show-incomplete-problems.gif;
 spacer.gif;
 sprs.gif;
 src.gif;
+srvr.gif;
+start-navigation.gif;
 stat.gif;
 subm.gif;
 title.gif;
@@ -6099,10 +7208,12 @@ vbkm.gif;
 <filenames>
 anno.png;
 bchat.png;
+ccat.png;
 ccrs.png;
 clst.png;
 conf.png;
 courses.png;
+crsconf.png;
 docs.png;
 eval.png;
 grds.png;
@@ -6115,6 +7226,7 @@ roles.png;
 sprs.png;
 vbkm.png;
 anot.png;
+anot2.png;
 blog.png;
 chrt.png;
 cprv.png;
@@ -6127,9 +7239,18 @@ mcrs.png;
 parm.png;
 port.png;
 prt.png;
+rcrs.png;
+rsrv.png;
 sbkm.png;
 src.png;
+srvr.png;
 subm.png;
+thumbsup.png;
+thumbsup_gray.png;
+thumbsup_novote.png;
+thumbsdown.png;
+thumbsdown_gray.png;
+thumbsdown_novote.png;
 back.png;
 catalog.png;
 com.png;
@@ -6145,6 +7266,103 @@ res.png;
 rtrv.png;
 sctr.png;
 stat.png;
+pdfupload.png;
+course_ini.png;
+dismath.png;
+feedback.png;
+mngcu.png;
+prob_ana.png;
+role_hotlist.png;
+self_enroll.png;
+survey_rep.png;
+subdocs.png;
+uplusr.png;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.png</glob>
+<sourcedir>loncom/html/res/adm/pages/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>graphical icons used in submenus</description>
+<filenames>
+aboutme.png;
+addClickerInfoFile.png;
+anonsurveythreshold.png;
+ccatconf.png;
+chat.png;
+comblock.png;
+contact-new.png;
+coprplot.png;
+crsnew.png;
+dialog-information.png;
+document-open.png;
+document-properties.png;
+dropbox.png;
+dump.png;
+edit-copy.png;
+edit-find-replace.png;
+edit-find.png;
+edit-redo.png;
+edit-select-all.png;
+edit-undo.png;
+emblem-photos.png;
+emblem-readonly.png;
+emblem-system.png;
+extres.png;
+folder-new.png;
+format-justify-fill.png;
+fromfile.png;
+groupportfolio.png;
+groupportfolioquota.png;
+grp_add.png;
+grp_settings.png;
+grp_tools.png;
+ims.png;
+imsexport.png;
+list-add.png;
+log.png;
+mail-message-new.png;
+mail-reply-all.png;
+mail-reply-sender.png;
+messalog.png;
+myaboutme.png;
+navigation.png;
+network-workgroup.png;
+page.png;
+preferences-desktop-font.png;
+preferences-desktop-locale.png;
+preferences-desktop-remote-desktop.png;
+preferences-desktop-theme.png;
+preferences-desktop-wallpaper.png;
+preferences-system-windows.png;
+recover.png;
+remotecontrol.png;
+resversion.png;
+scoreupfrm.png;
+selfenrl-queue.png;
+sequence.png;
+simple.png;
+simpprob.png;
+start-here.png;
+subtimpl.png;
+syllabus.png;
+symbs.png;
+system-lock-screen.png;
+system-users.png;
+uplcrs.png;
+uploadscores.png;
+verify.png;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>modules/relate/images/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Custom images for learn-physics</description>
+<filenames>
+refresh.gif;
 </filenames>
 </fileglob>
 <file>
@@ -6429,6 +7647,14 @@ preserve_local_loncapa_cron
   </dependencies>
 </file>
 <file>
+<source>loncom/cron/loncapa</source>
+<target dist='default'>home/httpd/lib/perl/loncapa_cron-std</target>
+<categoryname>handler</categoryname>
+<description>
+  Back-up of standard loncapa cron file (the actual file in use: /etc/cron.d/loncapa may contain local modifications).
+</description>
+</file>
+<file>
 <source>loncom/ntp/step-tickers</source>
 <target dist='default'>usr/local/loncapa/doc/conf_examples/ntp_step-tickers
 </target>
@@ -6461,7 +7687,7 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
-<target dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2'>etc/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
@@ -6469,7 +7695,7 @@ Controls the launching/halting of lonc,
 </file>
 <link>
 <linkto dist='default'>etc/rc.d/init.d/loncontrol</linkto>
-<linkto dist='suse9.2 suse9.3 sles9 sles10 suse10.1 suse10.2'>etc/init.d/loncontrol</linkto>
+<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</linkto>
 <target dist='default'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
@@ -6479,20 +7705,37 @@ etc/rc.d/rc4.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
-<target dist='suse10.2'></target>
+<target='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>
+etc/rc.d/rc0.d/K05loncontrol;
+etc/rc.d/rc1.d/K05loncontrol;
+etc/rc.d/rc2.d/K05loncontrol;
+etc/rc.d/rc3.d/S95loncontrol;
+etc/rc.d/rc5.d/S95loncontrol;
+etc/rc.d/rc6.d/K05loncontrol
+</target>
+<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>
+etc/rc0.d/K05loncontrol;
+etc/rc1.d/K05loncontrol;
+etc/rc2.d/S95loncontrol;
+etc/rc3.d/S95loncontrol;
+etc/rc4.d/S95loncontrol;
+etc/rc5.d/S95loncontrol;
+etc/rc6.d/K05loncontrol
+</target>
 <categoryname>symbolic link</categoryname>
 <description>
-symbolic links to /etc/rc.d/init.d/loncontrol for run-levels</description>
+symbolic links to /etc/rc.d/init.d/loncontrol (redhat/fedora) or /etc/init.d/loncontrol (suse/debian) for run-levels
+</description>
 </link>
 
-<file dist="suse10.2">
+<file dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
   <source>loncom/init.d/loncontrol</source>
   <target>etc/rc.d/</target>
   <description>
     setup loncontrol to run at boot
   </description>
-  <installscript dist="suse10.2">
--c 'chkconfig --del loncontrol;chkconfig loncontrol 345;chkconfig --list loncontrol'
+  <installscript dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
+-c 'chkconfig --del loncontrol;chkconfig loncontrol 35;chkconfig --list loncontrol'
   </installscript>
   <dependencies>
 loncom/init.d/loncontrol
@@ -6500,6 +7743,26 @@ loncom/init.d/loncontrol
 </file>
 
 <file>
+  <source>doc/latex/utf8.def</source>
+  <target dist='default'>usr/local/loncapa/doc/utf8.def</target>
+  <target dist='rhes4'>usr/share/texmf/tex/latex/base/utf8.def</target>
+  <categoryname>system file</categoryname>
+  <description>
+   utf8 definitions for LaTeX
+  </description>
+</file>
+
+<file>
+  <source>doc/latex/utf8enc.dfu</source>
+  <target dist='default'>usr/local/loncapa/doc/utf8enc.dfu</target>
+  <target dist='rhes4'>usr/share/texmf/tex/latex/base/utf8enc.dfu</target>
+  <categoryname>system file</categoryname>
+  <description>
+   utf8 declarations for LaTeX
+  </description>
+</file>
+
+<file>
 <source>loncom/atalk/config</source>
 <target dist='default'>usr/local/loncapa/doc/conf_examples/config</target>
 <categoryname>static conf</categoryname>
@@ -6574,6 +7837,14 @@ of users, and (b) to display e-mail of t
   </description>
 </file>
 <file>
+  <source>loncom/interface/createaccount.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/createaccount.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    An e-mail address can be used to create a LON-CAPA account via a two-step process employing a token sent to the e-mail address (the address will be the username). Alternatively, an institutional login can be used (after successful authentication) to create a corresponding LON-CAPA account, if one is missing.
+  </description>
+</file>
+<file>
   <source>loncom/interface/lonmodifycourse.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonmodifycourse.pm</target>
   <categoryname>handler</categoryname>
@@ -6591,6 +7862,31 @@ of users, and (b) to display e-mail of t
   </description>
 </file>
 <file>
+  <source>loncom/interface/domainstatus.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/domainstatus.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for generation of a menu of links to server status utilities
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonconfigsettings.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonconfigsettings.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Common routines for generating menus to set default configuration settings -  
+   for a domain or for a course.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpdfupload.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpdfupload.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Interface to upload a PDF form containing responses to problems entered offline using a PDF reader for storage as submissions.
+  </description>
+</file>
+<file>
   <source>loncom/interface/lonpopulate.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonpopulate.pm</target>
   <categoryname>handler</categoryname>
@@ -6663,6 +7959,14 @@ of users, and (b) to display e-mail of t
   </description>
 </file>
 <file>
+  <source>loncom/interface/lonblockingstatus.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonblockingstatus.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Used for displaying the communication blocking status.
+  </description>
+</file>
+<file>
   <source>loncom/automation/Autocreate.pl</source>Autocreate.pl
   <target dist='default'>home/httpd/perl/Autocreate.pl</target>
   <categoryname>script</categoryname>
@@ -6691,12 +7995,13 @@ modify_config_files.pl;
 parse_scantron.pl;
 seed_accesscount.pl;
 stress.pl;
+testkerberos.pl;
 unescape.pl;
 user_login_count.pl;
 </filenames>
 </fileglob>
 <fileglob>
-    <glob>*</glob>
+    <glob>*.*</glob>
     <sourcedir>loncom/debugging_tools/compiled/</sourcedir>
     <targetdir dist='default'>home/httpd/perl/debug/</targetdir>
     <categoryname>script</categoryname>
@@ -6704,13 +8009,34 @@ user_login_count.pl;
       Binary tools for LON-CAPA
     </description>
 <filenames>
-create_db_dynamic;
-create_db_dynamic_64;
 create_db_dynamic_64_so.3;
-dump_db_static_32;
 </filenames>
 </fileglob>
 <file>
+<source>loncom/debugging_tools/compiled/create_db_dynamic</source>
+<target dist='default'>home/httpd/perl/debug/create_db_dynamic</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/compiled/create_db_dynamic_64</source>
+<target dist='default'>home/httpd/perl/debug/create_db_dynamic_64</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/compiled/dump_db_static_32</source>
+<target dist='default'>home/httpd/perl/debug/dump_db_static_32</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
 <source>loncom/build/distprobe</source>
 <target dist='default'>home/httpd/perl/distprobe</target>
 <categoryname>script</categoryname>
@@ -6720,5 +8046,15 @@ for probing operating system flavor and
 <note>
 </note>
 </file>
+<file>
+<source>loncom/clusteradmin</source>
+<target dist='default'>home/httpd/perl/manage_dns/clusteradmin</target>
+<categoryname>root script</categoryname>
+<description>
+Script to update cluster tables: dns_hosts.tab and dns_domain.tab
+on a LON-CAPA DNS server.
+</description>
+<status>works/unverified</status>
+</file>
 </files>
 </lpml>