--- doc/loncapafiles/loncapafiles.lpml	2001/12/19 22:35:22	1.76
+++ doc/loncapafiles/loncapafiles.lpml	2002/03/01 01:45:39	1.104
@@ -1,7 +1,7 @@
-<!-- loncapafiles.pl
+<!-- loncapafiles.lpml -->
 <!-- Scott Harrison -->
 
-<!-- $Id: loncapafiles.lpml,v 1.76 2001/12/19 22:35:22 harris41 Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.104 2002/03/01 01:45:39 harris41 Exp $ -->
 
 <!--
 
@@ -36,26 +36,33 @@ http://www.lon-capa.org/
 <!-- defined. -->
 
 <lpml>
-<specialnotice dist='redhat 7.0 redhat7.1'>
-!!!!!!!!!  REDHAT 7.1   NOTICE   !!!!!!!!!!!!!!!!!!!!
+<specialnotices>
+<specialnotice dist='default'>
+!!! REDHAT 6.2 NOTICE !!!
+!!! Sometimes an incorrect /etc/hosts file is incorrectly generated !!!
+!!! This sometimes happens (bad): !!!
+!!! 127.0.0.1  computer1 localhost.localdomain localhost  !!!
+!!! Should be: !!!
+!!! 127.0.0.1  localhost.localdomain  localhost !!!
+!!! 35.2.3.80  computer1 computer1.notreal.msu.edu !!!
+</specialnotice>
+<specialnotice dist='redhat7.0 redhat7.1'>
+!!!!!!!!!  REDHAT 7.*   NOTICE   !!!!!!!!!!!!!!!!!!!!
 !!!!!!!!!  LINE IN Cookie.pm     !!!!!!!!!!!!!!!!!!!!
 !!!!!!!!!  MUST BE REPLACED DUE  !!!!!!!!!!!!!!!!!!!!
 !!!!!!!!!  TO PERL 5.6.0 ERROR   !!!!!!!!!!!!!!!!!!!!
 !!!!!!!!!                        !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
 !!!! The offending line is in CGI/Cookie.pm                           !!
 !!!!                                                                  !!
-!!!! it went from                                                     !!
-!!!!                                                                  !!
-!!!!                                                                  !!
-!!!! # IE requires the path and domain to be present for some reason. !!
-!!!! ($path = $ENV{'SCRIPT_NAME'})=~s![^/]+$!! unless $path;          !!
-!!!!                                                                  !!
+!!!! it should be changed from                                        !!
+!!!! $path   = CGI::url(-absolute=>1) unless defined $path;           !!
 !!!! to                                                               !!
+!!!! ($path = $ENV{'SCRIPT_NAME'})=~s![^/]+$!! unless $path;          !!
 !!!!                                                                  !!
-!!!!                                                                  !!
+!!!! (This is just below the following line )                         !!
 !!!! # IE requires the path and domain to be present for some reason. !!
-!!!! $path   = CGI::url(-absolute=>1) unless defined $path;           !!
 </specialnotice>
+</specialnotices>
 <targetroot>/</targetroot>
 <sourceroot>/home/user/loncapa/</sourceroot>
 <categories>
@@ -115,6 +122,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0400</chmod><chown dist='default'>www:www</chown>
   <abbreviation>graphicfile</abbreviation>
 </category>
+<category name="doc" type="runtime">
+  <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
+  <abbreviation>systemfile</abbreviation>
+</category>
+<category name="doc" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
+  <abbreviation>systemfile</abbreviation>
+</category>
 <category name="system file" type="runtime">
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>systemfile</abbreviation>
@@ -177,11 +192,10 @@ Division of Science and Mathematics Educ
   <rpmGroup>Utilities/System</rpmGroup>
   <rpmSource>LON-CAPA-base-3.1.tar.gz</rpmSource>
   <rpmAutoReqProv>no</rpmAutoReqProv>
-  <rpmdescription>This package facilitates a base installation of LON-CAPA files in their directories.\n
-The files in this package are only those directly associated with the network communication\n
-layer established through direct server-to-server communications (via lond and lonc); plus\n
-those which configure (but otherwise not constitute) external software packages like Apache\n
-and Athena-Kerberos.  For more on the LON-CAPA project, visit http://www.lon-capa.org/.</rpmdescription>
+  <rpmdescription>This package facilitates a base installation of LON-CAPA \n
+files in their directories.\n
+For more on the LON-CAPA project, visit http://www.lon-capa.org/.
+  </rpmdescription>
   <rpmpre>echo '***********************************************************************'\n
 echo 'LON-CAPA  LearningOnline with CAPA'\n
 echo 'http://www.lon-capa.org/'\n
@@ -195,12 +209,13 @@ echo 'This installation assumes an insta
 echo ' '\n
 echo 'The server computer should be currently connected to the ethernet'\n
 echo ' '\n
-echo 'The files in this package are only those directly associated with the network communication'\n
-echo 'layer established through direct server-to-server communications (via lond and lonc); plus'\n
-echo 'those which configure (but otherwise not constitute) external software packages like Apache'\n
-echo 'and Athena-Kerberos.'\n
 echo '***********************************************************************'\n
 </rpmpre>
+<rpmRequires>
+<item>PreReq: LON-CAPA-setup</item>
+<item>PreReq: apache</item>
+<item>PreReq: /etc/httpd/conf/access.conf</item>
+</rpmRequires>
 </rpm>
 <directories>
 <directory>
@@ -305,6 +320,14 @@ echo '**********************************
   </description>
 </directory>
 <directory>
+  <targetdir dist='default'>home/httpd/html/lon-status/londchld</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>
+Used by lond parent to check if children are responding to USR1 signals
+(otherwise they are killed and replaced).
+  </description>
+</directory>
+<directory>
   <targetdir dist='default'>home/httpd/perl/tmp</targetdir>
   <categoryname>server standard</categoryname>
   <description>location where temporary files (for caching) are stored
@@ -384,6 +407,12 @@ interface</description>
 interface, Apache (mod_perl) handlers</description>
 </directory>
 <directory>
+  <targetdir dist='default'>home/httpd/html/adm/help/scripts</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation for the LON-CAPA programming
+interface, Apache (mod_perl) handlers</description>
+</directory>
+<directory>
   <targetdir dist='default'>home/httpd/html/adm/lonIcons</targetdir>
   <categoryname>server readonly</categoryname>
   <description>graphic widgets</description>
@@ -467,6 +496,21 @@ LON-CAPA system.</description>
   </description>
 </directory>
 <directory>
+  <targetdir dist='default'>usr/local/bin</targetdir>
+  <categoryname>standard</categoryname>
+  <description>local binary files</description>
+</directory>
+<directory>
+  <targetdir dist='default'>usr/local/man/man1</targetdir>
+  <categoryname>standard</categoryname>
+  <description>local manual pages</description>
+</directory>
+<directory>
+  <targetdir dist='default'>usr/man/man1</targetdir>
+  <categoryname>standard</categoryname>
+  <description>manual pages</description>
+</directory>
+<directory>
   <targetdir dist='default'>usr/man/man3</targetdir>
   <categoryname>standard</categoryname>
   <description>manual pages</description>
@@ -502,6 +546,15 @@ each list element consists of only two s
 </note>
 </file>
 <file>
+<source>loncom/loncapa.conf</source>
+<target dist='default'>etc/httpd/conf/loncapa.conf</target>
+<categoryname>conf</categoryname>
+<description>
+The goal of this file is to implement all LON-CAPA specific
+customization of the Apache web server.
+</description>
+</file>
+<file>
 <source>loncom/access.conf</source>
 <target dist='default'>etc/httpd/conf/access.conf</target>
 <categoryname>conf</categoryname>
@@ -520,7 +573,7 @@ and browser detection logic.
 <note>
 <b>configure</b>
 <br />
-<table cellpadding=0 cellspacing=0 border=1>
+<table cellpadding='0' cellspacing='0' border='1'>
 <tr><td><tt>lonHostID</tt></td><td>LON-internal HostID of this
 machine</td></tr>
 <tr><td><tt>lonRole</tt></td><td>Role of this machine: library,
@@ -617,6 +670,14 @@ parameter.
 </description>
 </file>
 <file>
+<source>loncom/cgi/clusterstatus.pl</source>
+<target dist='default'>home/httpd/cgi-bin/clusterstatus.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to view status of cluster
+</description>
+</file>
+<file>
 <source>loncom/cgi/graph.gif</source>
 <target dist='default'>home/httpd/cgi-bin/graph.gif</target>
 <categoryname>script</categoryname>
@@ -629,6 +690,22 @@ GDGraph-1.33 and GDTextUtils-0.80.
 </note>
 </file>
 <file>
+<source>loncom/cgi/lonversions.pl</source>
+<target dist='default'>home/httpd/cgi-bin/lonversions.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to view software versions of a remote server
+</description>
+</file>
+<file>
+<source>loncom/cgi/ping.pl</source>
+<target dist='default'>home/httpd/cgi-bin/ping.pl</target>
+<categoryname>script</categoryname>
+<description>
+cgi-script to ping other server
+</description>
+</file>
+<file>
 <source>loncom/cgi/plot.gif</source>
 <target dist='default'>home/httpd/cgi-bin/plot.gif</target>
 <categoryname>script</categoryname>
@@ -775,7 +852,7 @@ and privileges available in the network
 <file>
 <source>loncom/hosts.tab</source>
 <target dist='default'>home/httpd/lonTabs/hosts.tab</target>
-<categoryname>conf</categoryname>
+<categoryname>static conf</categoryname>
 <description>
 List of all machines in the LON-CAPA network.  Relates <tt>lonHostID</tt> to
 <tt>lonDefDomain</tt> and <u>IP address</u>.
@@ -790,7 +867,7 @@ Spare hosts to offload session to if the
 </description>
 <note>
 <b>configure</b><br />
-<table cellpadding=0 cellspacing=0 border=1>
+<table cellpadding='0' cellspacing='0' border='1'>
 <tr><td>
 list elements are separated by newlines
 </td></tr>
@@ -827,7 +904,7 @@ neighborhood
 which NTP server to contact for information (XNTP3 standard)
 </description>
 <note>
-<table cellpadding=0 cellspacing=0 border=1>
+<table cellpadding='0' cellspacing='0' border='1'>
 <tr><td>
 only one line needs to be changed to specify a server ip address
 </td></tr>
@@ -854,6 +931,32 @@ proxy server
 </description>
 </file>
 <file>
+<source>doc/man/lonc.1</source>
+<target dist='default'>usr/man/man1/lonc.1</target>
+<categoryname>doc</categoryname>
+<description>man page for lonc</description>
+<build trigger='always run'>
+loncom/build/pod2man.sh ../lonc > ../../doc/man/lonc.1 && echo 'manifying lonc'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/lonc
+</dependencies>
+</file>
+<file>
+<source>doc/scripts/lonc.html</source>
+<target dist='default'>home/httpd/html/adm/help/scripts/lonc.html</target>
+<categoryname>doc</categoryname>
+<description>POD-derived page for lonc</description>
+<build trigger='always run'>
+loncom/build/pod2html.sh ../lonc > ../../doc/scripts/lonc.html && echo 'pod2html lonc'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/lonc
+</dependencies>
+</file>
+<file>
 <source>loncom/lond</source>
 <target dist='default'>home/httpd/perl/lond</target>
 <categoryname>script</categoryname>
@@ -872,6 +975,32 @@ tmpput, tmpget, and ls).
 </description>
 </file>
 <file>
+<source>doc/man/lond.1</source>
+<target dist='default'>usr/man/man1/lond.1</target>
+<categoryname>doc</categoryname>
+<description>man page for lond</description>
+<build trigger='always run'>
+loncom/build/pod2man.sh ../lond > ../../doc/man/lond.1 && echo 'manifying lond'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/lond
+</dependencies>
+</file>
+<file>
+<source>doc/scripts/lond.html</source>
+<target dist='default'>home/httpd/html/adm/help/scripts/lond.html</target>
+<categoryname>doc</categoryname>
+<description>POD-derived page for lond</description>
+<build trigger='always run'>
+loncom/build/pod2html.sh ../lond > ../../doc/scripts/lond.html && echo 'pod2html lond'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/lond
+</dependencies>
+</file>
+<file>
 <source>loncom/cgi/loncron.pl</source>
 <target dist='default'>home/httpd/cgi-bin/loncron.pl</target>
 <categoryname>script</categoryname>
@@ -890,6 +1019,32 @@ tmpput, tmpget, and ls).
 <description>maintain secondary database of metadata</description>
 </file>
 <file>
+<source>doc/man/lonsql.1</source>
+<target dist='default'>usr/man/man1/lonsql.1</target>
+<categoryname>doc</categoryname>
+<description>man page for lonsql</description>
+<build trigger='always run'>
+loncom/build/pod2man.sh ../lonsql > ../../doc/man/lonsql.1 && echo 'manifying lonsql'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/lonsql
+</dependencies>
+</file>
+<file>
+<source>doc/scripts/lonsql.html</source>
+<target dist='default'>home/httpd/html/adm/help/scripts/lonsql.html</target>
+<categoryname>doc</categoryname>
+<description>POD-derived page for lonsql</description>
+<build trigger='always run'>
+loncom/build/pod2html.sh ../lonsql > ../../doc/scripts/lonsql.html && echo 'pod2html lonsql'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/lonsql
+</dependencies>
+</file>
+<file>
 <source>loncom/lcpasswd</source>
 <target dist='default'>home/httpd/perl/lcpasswd</target>
 <categoryname>setuid script</categoryname>
@@ -1019,7 +1174,7 @@ retroactively add new parameters to alre
 <file>
 <source>loncom/publisher/copyright.tab</source>
 <target dist='default'>home/httpd/html/res/adm/includes/copyright.tab</target>
-<categoryname>conf</categoryname>
+<categoryname>static conf</categoryname>
 <description>
 Table which contains list of copyright possibilities for educational resources.
 </description>
@@ -1091,10 +1246,10 @@ Handler to upload files through browser
 <file>
 <source>doc/man/Apache__lonupload.3</source>
 <target dist='default'>usr/man/man3/Apache::lonupload.3</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>man page for lonupload.pm</description>
 <build trigger='always run'>
-loncom/build/pod2man.sh ../publisher/lonupload.pm > ../../doc/man/Apache__lonupload.3
+loncom/build/pod2man.sh ../publisher/lonupload.pm > ../../doc/man/Apache__lonupload.3 && echo 'manifying lonupload.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1104,10 +1259,10 @@ loncom/build/pod2man.sh ../publisher/lon
 <file>
 <source>doc/api/Apache/lonupload.html</source>
 <target dist='default'>home/httpd/html/adm/help/api/Apache/lonupload.html</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>POD-derived page for lonupload.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../publisher/lonupload.pm > ../../doc/api/Apache/lonupload.html
+loncom/build/pod2html.sh ../publisher/lonupload.pm > ../../doc/api/Apache/lonupload.html && echo 'pod2html lonupload.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1124,6 +1279,24 @@ Handler to evaluate essay (ungraded) sty
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/homework/externalresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/externalresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to evaluate externally graded responses.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/homework/loncapagrade.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncapagrade.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to evaluate externally graded responses.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/lonpubdir.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpubdir.pm</target>
 <categoryname>handler</categoryname>
@@ -1134,10 +1307,10 @@ Handler to publish directories.
 <file>
 <source>doc/man/Apache__lonpubdir.3</source>
 <target dist='default'>usr/man/man3/Apache::lonpubdir.3</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>man page for lonpubdir.pm</description>
 <build trigger='always run'>
-loncom/build/pod2man.sh ../publisher/lonpubdir.pm > ../../doc/man/Apache__lonpubdir.3
+loncom/build/pod2man.sh ../publisher/lonpubdir.pm > ../../doc/man/Apache__lonpubdir.3 && echo 'manifying lonpubdir.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1147,10 +1320,10 @@ loncom/build/pod2man.sh ../publisher/lon
 <file>
 <source>doc/api/Apache/lonpubdir.html</source>
 <target dist='default'>home/httpd/html/adm/help/api/Apache/lonpubdir.html</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>POD-derived page for lonpubdir.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../publisher/lonpubdir.pm > ../../doc/api/Apache/lonpubdir.html
+loncom/build/pod2html.sh ../publisher/lonpubdir.pm > ../../doc/api/Apache/lonpubdir.html && echo 'pod2html lonpubdir.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1169,10 +1342,10 @@ Handler to retrieve old versions from re
 <file>
 <source>doc/man/Apache__lonretrieve.3</source>
 <target dist='default'>usr/man/man3/Apache::lonretrieve.3</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>man page for lonretrieve.pm</description>
 <build trigger='always run'>
-loncom/build/pod2man.sh ../publisher/lonretrieve.pm > ../../doc/man/Apache__lonretrieve.3
+loncom/build/pod2man.sh ../publisher/lonretrieve.pm > ../../doc/man/Apache__lonretrieve.3 && echo 'manifying lonretrieve.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1182,10 +1355,10 @@ loncom/build/pod2man.sh ../publisher/lon
 <file>
 <source>doc/api/Apache/lonretrieve.html</source>
 <target dist='default'>home/httpd/html/adm/help/api/Apache/lonretrieve.html</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>POD-derived page for lonretrieve.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../publisher/lonretrieve.pm > ../../doc/api/Apache/lonretrieve.html
+loncom/build/pod2html.sh ../publisher/lonretrieve.pm > ../../doc/api/Apache/lonretrieve.html && echo 'pod2html lonretrieve.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1201,6 +1374,32 @@ Helper functions when in homework edit m
 </description>
 </file>
 <file>
+<source>doc/man/Apache__edit.3</source>
+<target dist='default'>usr/man/man3/Apache::edit.3</target>
+<categoryname>doc</categoryname>
+<description>man page for edit.pm</description>
+<build trigger='always run'>
+loncom/build/pod2man.sh ../homework/edit.pm > ../../doc/man/Apache__edit.3 && echo 'manifying edit.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/homework/edit.pm
+</dependencies>
+</file>
+<file>
+<source>doc/api/Apache/edit.html</source>
+<target dist='default'>home/httpd/html/adm/help/api/Apache/edit.html</target>
+<categoryname>doc</categoryname>
+<description>POD-derived page for edit.pm</description>
+<build trigger='always run'>
+loncom/build/pod2html.sh ../homework/edit.pm > ../../doc/api/Apache/edit.html && echo 'pod2html edit.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/homework/edit.pm
+</dependencies>
+</file>
+<file>
 <source>loncom/interface/lonmeta.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonmeta.pm</target>
 <categoryname>handler</categoryname>
@@ -1275,10 +1474,10 @@ user, domain, home_server, course_id.
 <file>
 <source>doc/man/Apache__loncommon.3</source>
 <target dist='default'>usr/man/man3/Apache::loncommon.3</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>man page for loncommon.pm</description>
 <build trigger='always run'>
-loncom/build/pod2man.sh ../interface/loncommon.pm > ../../doc/man/Apache__loncommon.3
+loncom/build/pod2man.sh ../interface/loncommon.pm > ../../doc/man/Apache__loncommon.3 && echo 'manifying loncommon.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1288,10 +1487,10 @@ loncom/build/pod2man.sh ../interface/lon
 <file>
 <source>doc/api/Apache/loncommon.html</source>
 <target dist='default'>home/httpd/html/adm/help/api/Apache/loncommon.html</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>POD-derived page for loncommon.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../interface/loncommon.pm > ../../doc/api/Apache/loncommon.html
+loncom/build/pod2html.sh ../interface/loncommon.pm > ../../doc/api/Apache/loncommon.html && echo 'pod2html loncommon.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1438,10 +1637,10 @@ Handles a searchable catalogue.
 <file>
 <source>doc/man/Apache__lonsearchcat.3</source>
 <target dist='default'>usr/man/man3/Apache::lonsearchcat.3</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>man page for lonsearchcat.pm</description>
 <build trigger='always run'>
-loncom/build/pod2man.sh ../interface/lonsearchcat.pm > ../../doc/man/Apache__lonsearchcat.3
+loncom/build/pod2man.sh ../interface/lonsearchcat.pm > ../../doc/man/Apache__lonsearchcat.3 && echo 'manifying lonsearchcat.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1451,10 +1650,10 @@ loncom/build/pod2man.sh ../interface/lon
 <file>
 <source>doc/api/Apache/lonsearchcat.html</source>
 <target dist='default'>home/httpd/html/adm/help/api/Apache/lonsearchcat.html</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>POD-derived page for lonsearchcat.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../interface/lonsearchcat.pm > ../../doc/api/Apache/lonsearchcat.html
+loncom/build/pod2html.sh ../interface/lonsearchcat.pm > ../../doc/api/Apache/lonsearchcat.html && echo 'pod2html lonsearchcat.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1520,10 +1719,10 @@ Handler to resolve ambiguous file locati
 <file>
 <source>doc/man/Apache__lonparmset.3</source>
 <target dist='default'>usr/man/man3/Apache::lonparmset.3</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>man page for lonparmset.pm</description>
 <build trigger='always run'>
-loncom/build/pod2man.sh ../interface/lonparmset.pm > ../../doc/man/Apache__lonparmset.3
+loncom/build/pod2man.sh ../interface/lonparmset.pm > ../../doc/man/Apache__lonparmset.3 && echo 'manifying lonparmset.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1533,10 +1732,10 @@ loncom/build/pod2man.sh ../interface/lon
 <file>
 <source>doc/api/Apache/lonparmset.html</source>
 <target dist='default'>home/httpd/html/adm/help/api/Apache/lonparmset.html</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>POD-derived page for lonparmset.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../interface/lonparmset.pm > ../../doc/api/Apache/lonparmset.html
+loncom/build/pod2html.sh ../interface/lonparmset.pm > ../../doc/api/Apache/lonparmset.html && echo 'pod2html lonparmset.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1565,10 +1764,10 @@ Publishes an LON-CAPA educational resour
 <file>
 <source>doc/man/Apache__lonpublisher.3</source>
 <target dist='default'>usr/man/man3/Apache::lonpublisher.3</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>man page for lonpublisher.pm</description>
 <build trigger='always run'>
-loncom/build/pod2man.sh ../publisher/lonpublisher.pm > ../../doc/man/Apache__lonpublisher.3
+loncom/build/pod2man.sh ../publisher/lonpublisher.pm > ../../doc/man/Apache__lonpublisher.3 && echo 'manifying lonpublisher.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1578,10 +1777,10 @@ loncom/build/pod2man.sh ../publisher/lon
 <file>
 <source>doc/api/Apache/lonpublisher.html</source>
 <target dist='default'>home/httpd/html/adm/help/api/Apache/lonpublisher.html</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>POD-derived page for lonpublisher.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../publisher/lonpublisher.pm > ../../doc/api/Apache/lonpublisher.html
+loncom/build/pod2html.sh ../publisher/lonpublisher.pm > ../../doc/api/Apache/lonpublisher.html && echo 'pod2html lonpublisher.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1664,10 +1863,10 @@ bundles pages into one page
 <file>
 <source>doc/man/Apache__lonpage.3</source>
 <target dist='default'>usr/man/man3/Apache::lonpage.3</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>man page for lonpage.pm</description>
 <build trigger='always run'>
-loncom/build/pod2man.sh ../../rat/lonpage.pm > ../../doc/man/Apache__lonpage.3
+loncom/build/pod2man.sh ../../rat/lonpage.pm > ../../doc/man/Apache__lonpage.3 && echo 'manifying lonpage.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1677,10 +1876,10 @@ loncom/build/pod2man.sh ../../rat/lonpag
 <file>
 <source>doc/api/Apache/lonpage.html</source>
 <target dist='default'>home/httpd/html/adm/help/api/Apache/lonpage.html</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>POD-derived page for lonnet.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../../rat/lonpage.pm > ../../doc/api/Apache/lonpage.html
+loncom/build/pod2html.sh ../../rat/lonpage.pm > ../../doc/api/Apache/lonpage.html && echo 'pod2html lonpage.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1699,10 +1898,10 @@ compile course into binary data structur
 <file>
 <source>doc/man/Apache__lonuserstate.3</source>
 <target dist='default'>usr/man/man3/Apache::lonuserstate.3</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>man page for lonnet.pm</description>
 <build trigger='always run'>
-loncom/build/pod2man.sh ../../rat/lonuserstate.pm > ../../doc/man/Apache__lonuserstate.3
+loncom/build/pod2man.sh ../../rat/lonuserstate.pm > ../../doc/man/Apache__lonuserstate.3 && echo 'manifying lonuserstate.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1712,10 +1911,10 @@ loncom/build/pod2man.sh ../../rat/lonuse
 <file>
 <source>doc/api/Apache/lonuserstate.html</source>
 <target dist='default'>home/httpd/html/adm/help/api/Apache/lonuserstate.html</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>POD-derived page for lonuserstate.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../../rat/lonuserstate.pm > ../../doc/api/Apache/lonuserstate.html
+loncom/build/pod2html.sh ../../rat/lonuserstate.pm > ../../doc/api/Apache/lonuserstate.html && echo 'pod2html lonuserstate.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1750,6 +1949,15 @@ XML Parsing Module
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/lonplot.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonplot.pm</target>
+<categoryname>handler</categoryname>
+<description>
+XML-based plotter of graphs
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/style.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/style.pm</target>
 <categoryname>handler</categoryname>
@@ -1802,8 +2010,8 @@ image.
 <description>
 handles requests for output, evaluation, and alteration of a homework resource
 </description>
-</file>
 <status>works/unverified</status>
+</file>
 <file>
 <source>loncom/homework/inputtags.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/inputtags.pm</target>
@@ -1866,10 +2074,10 @@ as coordinating access to educational re
 <file>
 <source>doc/man/Apache__lonacc.3</source>
 <target dist='default'>usr/man/man3/Apache::lonacc.3</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>man page for lonacc.pm</description>
 <build trigger='always run'>
-loncom/build/pod2man.sh ../auth/lonacc.pm > ../../doc/man/Apache__lonacc.3
+loncom/build/pod2man.sh ../auth/lonacc.pm > ../../doc/man/Apache__lonacc.3 && echo 'manifying lonacc.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1879,10 +2087,10 @@ loncom/build/pod2man.sh ../auth/lonacc.p
 <file>
 <source>doc/api/Apache/lonacc.html</source>
 <target dist='default'>home/httpd/html/adm/help/api/Apache/lonacc.html</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>POD-derived page for lonacc.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../auth/lonacc.pm > ../../doc/api/Apache/lonacc.html
+loncom/build/pod2html.sh ../auth/lonacc.pm > ../../doc/api/Apache/lonacc.html && echo 'pod2html lonacc.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1899,6 +2107,32 @@ access handler for file transfers
 <status>works/unverified</status>
 </file>
 <file>
+<source>doc/man/Apache__lonracc.3</source>
+<target dist='default'>usr/man/man3/Apache::lonracc.3</target>
+<categoryname>doc</categoryname>
+<description>man page for lonracc.pm</description>
+<build trigger='always run'>
+loncom/build/pod2man.sh ../auth/lonracc.pm > ../../doc/man/Apache__lonracc.3 && echo 'manifying lonracc.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/auth/lonracc.pm
+</dependencies>
+</file>
+<file>
+<source>doc/api/Apache/lonracc.html</source>
+<target dist='default'>home/httpd/html/adm/help/api/Apache/lonracc.html</target>
+<categoryname>doc</categoryname>
+<description>POD-derived page for lonracc.pm</description>
+<build trigger='always run'>
+loncom/build/pod2html.sh ../auth/lonracc.pm > ../../doc/api/Apache/lonracc.html && echo 'pod2html lonracc.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/auth/lonracc.pm
+</dependencies>
+</file>
+<file>
 <source>loncom/auth/loncacc.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncacc.pm</target>
 <categoryname>handler</categoryname>
@@ -1917,6 +2151,32 @@ for the "priv"-type access, the resource
 <status>works/unverified</status>
 </file>
 <file>
+<source>doc/man/Apache__loncacc.3</source>
+<target dist='default'>usr/man/man3/Apache::loncacc.3</target>
+<categoryname>doc</categoryname>
+<description>man page for loncacc.pm</description>
+<build trigger='always run'>
+loncom/build/pod2man.sh ../auth/loncacc.pm > ../../doc/man/Apache__loncacc.3 && echo 'manifying loncacc.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/auth/loncacc.pm
+</dependencies>
+</file>
+<file>
+<source>doc/api/Apache/loncacc.html</source>
+<target dist='default'>home/httpd/html/adm/help/api/Apache/loncacc.html</target>
+<categoryname>doc</categoryname>
+<description>POD-derived page for loncacc.pm</description>
+<build trigger='always run'>
+loncom/build/pod2html.sh ../auth/loncacc.pm > ../../doc/api/Apache/loncacc.html && echo 'pod2html loncacc.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/auth/loncacc.pm
+</dependencies>
+</file>
+<file>
 <source>loncom/auth/lonauth.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonauth.pm</target>
 <categoryname>handler</categoryname>
@@ -1958,6 +2218,32 @@ class.
 </description>
 </file>
 <file>
+<source>doc/man/Apache__lonroles.3</source>
+<target dist='default'>usr/man/man3/Apache::lonroles.3</target>
+<categoryname>doc</categoryname>
+<description>man page for lonroles.pm</description>
+<build trigger='always run'>
+loncom/build/pod2man.sh ../auth/lonroles.pm > ../../doc/man/Apache__lonroles.3 && echo 'manifying lonroles.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/auth/lonroles.pm
+</dependencies>
+</file>
+<file>
+<source>doc/api/Apache/lonroles.html</source>
+<target dist='default'>home/httpd/html/adm/help/api/Apache/lonroles.html</target>
+<categoryname>doc</categoryname>
+<description>POD-derived page for lonroles.pm</description>
+<build trigger='always run'>
+loncom/build/pod2html.sh ../auth/lonroles.pm > ../../doc/api/Apache/lonroles.html && echo 'pod2html lonroles.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/auth/lonroles.pm
+</dependencies>
+</file>
+<file>
 <source>loncom/interface/lonindexer.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonindexer.pm</target>
 <categoryname>handler</categoryname>
@@ -1969,10 +2255,10 @@ cross server filesystem browser
 <file>
 <source>doc/man/Apache__lonindexer.3</source>
 <target dist='default'>usr/man/man3/Apache::lonindexer.3</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>man page for lonindexer.pm</description>
 <build trigger='always run'>
-loncom/build/pod2man.sh ../interface/lonindexer.pm > ../../doc/man/Apache__lonindexer.3
+loncom/build/pod2man.sh ../interface/lonindexer.pm > ../../doc/man/Apache__lonindexer.3 && echo 'manifying lonindexer.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1982,10 +2268,10 @@ loncom/build/pod2man.sh ../interface/lon
 <file>
 <source>doc/api/Apache/lonindexer.html</source>
 <target dist='default'>home/httpd/html/adm/help/api/Apache/lonindexer.html</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>POD-derived page for lonindexer.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../interface/lonindexer.pm > ../../doc/api/Apache/lonindexer.html
+loncom/build/pod2html.sh ../interface/lonindexer.pm > ../../doc/api/Apache/lonindexer.html && echo 'pod2html lonindexer.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2023,10 +2309,10 @@ symbols to and from more descriptive phr
 <file>
 <source>doc/man/Apache__lonnet.3</source>
 <target dist='default'>usr/man/man3/Apache::lonnet.3</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>man page for lonnet.pm</description>
 <build trigger='always run'>
-loncom/build/pod2man.sh ../lonnet/perl/lonnet.pm > ../../doc/man/Apache__lonnet.3
+loncom/build/pod2man.sh ../lonnet/perl/lonnet.pm > ../../doc/man/Apache__lonnet.3 && echo 'manifying lonnet.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2036,10 +2322,10 @@ loncom/build/pod2man.sh ../lonnet/perl/l
 <file>
 <source>doc/api/Apache/lonnet.html</source>
 <target dist='default'>home/httpd/html/adm/help/api/Apache/lonnet.html</target>
-<categoryname>system file</categoryname>
+<categoryname>doc</categoryname>
 <description>POD-derived page for lonnet.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../lonnet/perl/lonnet.pm > ../../doc/api/Apache/lonnet.html
+loncom/build/pod2html.sh ../lonnet/perl/lonnet.pm > ../../doc/api/Apache/lonnet.html && echo 'pod2html lonnet.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2382,7 +2668,11 @@ button to set parameters in a page,
 button to do regrades, button to check on problem submissions,
 </description>
 <filenames>
+authorfeed.gif;
+bomb.gif;
 cat_button.gif;
+chat.gif;
+feedback.gif;
 pprm_button.gif;
 pgrd_button.gif;
 subm_button.gif
@@ -2424,7 +2714,7 @@ modules/TexConvert/tthperl/commands
 <status>works/unverified</status>
 <dependencies>
 ../tthdynamic/tthfunc.c;
-../tthdynamic/ttmfunc.c
+../ttmdynamic/ttmfunc.c
 </dependencies>
 </file>
 <file>
@@ -2623,6 +2913,7 @@ p.gif;
 parm.gif;
 pgrd.gif;
 pparm.gif;
+pref.gif;
 prev.gif;
 prt.gif;
 q.gif;
@@ -2833,40 +3124,46 @@ javascript for handling client-side inte
 </description>
 </file>
 <file>
-<source>loncom/build/loncapaverifypackages</source>
-<target dist='default'>usr/sbin/loncapaverifypackages</target>
-<categoryname>script</categoryname>
+<source>loncom/build/check-rpms</source>
+<target dist='default'>usr/local/bin/check-rpms</target>
+<categoryname>root script</categoryname>
 <description>
-checks the system RPMs against what install.lon-capa.org specifies
+compare installed rpms with up-to-date distribution
 </description>
-<status>deprecated</status>
+<status>tested/documented/beta</status>
 </file>
 <file>
-<source>loncom/build/loncaparestoreconfigurations</source>
-<target dist='default'>usr/sbin/loncaparestoreconfigurations</target>
-<categoryname>script</categoryname>
-<description>
-restores .rpmsave files after a LON-CAPA-base upgrade
-</description>
-<status>deprecated</status>
+<source>doc/man/check-rpms.1</source>
+<target dist='default'>usr/local/man/man1/check-rpms.1</target>
+<categoryname>doc</categoryname>
+<description>man page for check-rpms</description>
+<build trigger='always run'>
+loncom/build/pod2man.sh check-rpms > ../../doc/man/check-rpms.1 && echo 'manifying check-rpms'
+</build>
+<status>beta</status>
+<dependencies>
+../../loncom/build/check-rpms
+</dependencies>
 </file>
 <file>
-<source>loncom/build/loncapaautoupgrade</source>
-<target dist='default'>usr/sbin/loncapaautoupgrade</target>
-<categoryname>script</categoryname>
-<description>
-does all the things to coordinate updating of LON-CAPA base files.  Should be
-used with caution so that you do not lose work
-</description>
-<status>deprecated</status>
+<source>doc/scripts/check-rpms.html</source>
+<target dist='default'>home/httpd/html/adm/help/scripts/check-rpms.html</target>
+<categoryname>doc</categoryname>
+<description>POD-derived page for check-rpms</description>
+<build trigger='always run'>
+loncom/build/pod2html.sh check-rpms > ../../doc/scripts/check-rpms.html && echo 'pod2html checkrpms'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/build/check-rpms
+</dependencies>
 </file>
 <file>
-<source>loncom/build/loncapaverify</source>
-<target dist='default'>usr/sbin/loncapaverify</target>
+<source>loncom/build/loncaparestoreconfigurations</source>
+<target dist='default'>usr/sbin/loncaparestoreconfigurations</target>
 <categoryname>script</categoryname>
 <description>
-makes verification report using loncapaverifypackages and
-loncapaverifybasepackage
+restores .rpmsave files after a LON-CAPA-base upgrade
 </description>
 <status>deprecated</status>
 </file>