--- doc/loncapafiles/loncapafiles.lpml	2012/12/19 01:38:39	1.797.2.21
+++ doc/loncapafiles/loncapafiles.lpml	2013/03/18 02:57:21	1.829
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.797.2.21 2012/12/19 01:38:39 raeburn Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.829 2013/03/18 02:57:21 raeburn Exp $ -->
 
 <!--
 
@@ -685,7 +685,7 @@ extensions</description>
   <categoryname>server readonly</categoryname>
   <description>JQuery countdown timer</description>
 </directory>
- 
+  
 <!-- JQuery spellchecker plugin -->
 
 <directory dist='default'>
@@ -713,6 +713,7 @@ extensions</description>
   <description>JQuery spellchecker plugin</description>
 </directory>
 
+
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/dragmath/applet</targetdir>
@@ -831,6 +832,7 @@ interface, Apache (mod_perl) handlers</d
   <categoryname>server readonly</categoryname>
   <description>error warnings and icons</description>
 </directory>
+
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lonUsers</targetdir>
@@ -909,12 +911,6 @@ are viewable over the world-wide web</de
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/lonLCDfont</targetdir>
-  <categoryname>server readonly</categoryname>
-  <description>LCD font for remote control</description>
-</directory>
-<directory dist='default'>
-  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonDomLogos</targetdir>
   <categoryname>server readonly</categoryname>
   <description>Logos for LON-CAPA domains</description>
@@ -1094,6 +1090,19 @@ the www@localhost MySQL password, and br
 </description>
 </file>
 <file>
+<source>loncom/loncapa_apache_local.conf</source>
+<target dist='default'>etc/httpd/conf/loncapa_apache_local.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/startup.pl</target>
+<categoryname>static conf</categoryname>
+<description>
+Documentation file describing how to add domain-specific Apache configuration
+files, e.g., (loncapa_apache_localmsu.conf).
+loncapa_apache_local.conf needs to exist if no domain-specific file has so far
+been created so that Apache 2.4 will start, given that loncapa_apache.conf has:
+Include conf/loncapa_apache_local*.conf
+</description>
+</file>
+<file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
 <target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/startup.pl</target>
@@ -1306,6 +1315,16 @@ utility cgi script to view software vers
 </description>
 </file>
 <file>
+<source>loncom/cgi/lonmodulecheck.pl</source>
+<target dist='default'>home/httpd/cgi-bin/lonmodulecheck.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to check for differences between currently 
+installed versions of LON-CAPA modules and those expected for the 
+LON-CAPA release installed on the server.
+</description>
+</file>
+<file>
 <source>loncom/cgi/ping.pl</source>
 <target dist='default'>home/httpd/cgi-bin/ping.pl</target>
 <categoryname>script</categoryname>
@@ -1569,6 +1588,15 @@ reaction_hint.problem.meta
 </fileglob>
 
 <file>
+  <source>loncom/interface/spellcheck.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/spellcheck.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Ajax handler for the spellcheck Jquery plugin
+  </description>
+  <status>IN testing</status>
+</file>
+<file>
   <source>loncom/homework/insertlist.xml</source>
   <target dist='default'>home/httpd/lonTabs/insertlist.xml</target>
   <categoryname>static conf</categoryname>
@@ -1689,6 +1717,17 @@ List of all domains in the LON-CAPA netw
 </file>
 
 <file>
+  <source>loncom/dns_checksums.tab</source>
+  <target dist='default'>home/httpd/lonTabs/dns_checksums.tab</target>
+  <categoryname>www static conf</categoryname>
+  <description>
+File containing version numbers and checksums for most LON-CAPA perl modules,
+perl scripts, cgi scripts, daemons, and a configuration file in each 
+LON-CAPA release, starting with 2.11.0.RC1
+  </description>
+</file>
+
+<file>
   <source>loncom/loncaparevs.tab</source>
   <target dist='default'>home/httpd/lonTabs/loncaparevs.tab</target>
   <categoryname>www conf</categoryname>
@@ -1708,6 +1747,17 @@ File holds paired data -- hostname:lonHo
 </file>
 
 <file>
+  <source>loncom/lonchksums.tab</source>
+  <target dist='default'>home/httpd/lonTabs/lonchksums.tab</target>
+  <categoryname>www conf</categoryname>
+  <description>
+File containing version numbers and checksums for most LON-CAPA perl modules,
+perl scripts, cgi scripts, daemons, and a configuration file for current
+server. Updated by loncron.
+  </description>
+</file>
+
+<file>
 <source>loncom/spare.tab</source>
 <target dist='default'>home/httpd/lonTabs/spare.tab</target>
 <categoryname>conf</categoryname>
@@ -1813,6 +1863,17 @@ file: nohist_courseids.db found in /home
 </description>
 </file>
 <file>
+<source>loncom/misc/checkforupdates.pl</source>
+<target dist='default'>home/httpd/perl/checkforupdates.pl</target>
+<categoryname>script</categoryname>
+<description>
+Perl script run by cron to check:
+(a) for differences between currently installed versions of LON-CAPA modules
+and those expected for the particular LON-CAPA release
+(b) if an updated LON-CAPA release is available from install.loncapa.org  
+</description>
+</file>
+<file>
 <source>loncom/debugging_tools/seed_accesscount.pl</source>
 <target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
 <categoryname>script</categoryname>
@@ -2403,6 +2464,15 @@ Handler for a DC to pick an author from
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonpickresource.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickresource.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a resource or folder from the course contents
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonpickuser.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpickuser.pm</target>
 <categoryname>handler</categoryname>
@@ -2864,6 +2934,7 @@ system-users.gif;
 turning.gif;
 uploadscores.gif;
 uplusr.gif;
+vbkm.gif;
 verify.gif;
 wishlist.gif;
 wishlist-link.gif;
@@ -3549,6 +3620,21 @@ Generation.tex;
 Metadata_Description.tex;
 Navigation_Screen.tex;
 Parameter_Overview.tex;
+Portfolio_About.tex;
+Portfolio_AddFiles.tex;
+Portfolio_Catalog.tex;
+Portfolio_ChangeDirectory.tex;
+Portfolio_CreateDirectory.tex;
+Portfolio_DeleteFile.tex;
+Portfolio_FileAction.tex;
+Portfolio_FileList.tex;
+Portfolio_OpenFile.tex;
+Portfolio_RenameFile.tex;
+Portfolio_ShareFile.tex;
+Portfolio_ShareFile_ChangeSetting.tex;
+Portfolio_ShareFile_Conditional.tex;
+Portfolio_ShareFile_SetAccess.tex;
+Portfolio_ShareFile_StopAccess.tex;
 Problem_Parameters.tex;
 Publishing_Copyright.tex;
 Publishing_Keywords.tex;
@@ -4122,6 +4208,14 @@ Contains a set of functions that generat
 </description>
 </file>
 <file>
+<source>loncom/interface/lonhtmlgateway.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhtmlgateway.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains a set of functions to properly parse and handle HTML input and output
+</description>
+</file>
+<file>
 <source>loncom/interface/lonspeller.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonspeller.pm</target>
 <categoryname>handler</categoryname>
@@ -4479,6 +4573,7 @@ jsMath is a Javascript solution to conve
 black.gif;
 blank.gif;
 COPYING.txt;
+FONTSVERSION;
 jsMath-BaKoMa-fonts.js;
 jsMath-autoload.html;
 jsMath-controls.html;
@@ -4507,7 +4602,7 @@ jsMath-old-browsers.js;
     Server side png fonts for use by jsMath
   </description>
   <installscript>
-commands /home/httpd/html/adm
+commands
   </installscript>
   <dependencies>
 loncom/html/adm/jsMath/commands;
@@ -4516,7 +4611,7 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 </file>
 
 <file>
-  <source>loncom/html/adm/MathJax/mathjax-MathJax-v2.0-20-g07669ac.zip</source>
+  <source>loncom/html/adm/MathJax/mathjax-MathJax-v2.1-241378e.zip</source>
   <target dist='default'>home/httpd/html/adm/MathJax</target>
   <categoryname>script</categoryname>
   <description>
@@ -4526,12 +4621,12 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
    unzipping the file, making it look cleaner in the /home/.../adm/ directory
   </description>
   <installscript>
-commands /home/httpd/html/adm/MathJax
+commands
   </installscript>
   <dependencies>
 loncom/html/adm/MathJax/commands;
 loncom/html/adm/MathJax/VERSION;
-loncom/html/adm/MathJax/mathjax-MathJax-v2.0-20-g07669ac.zip;
+loncom/html/adm/MathJax/mathjax-MathJax-v2.1-241378e.zip
   </dependencies>
 </file>
 
@@ -4543,7 +4638,7 @@ loncom/html/adm/MathJax/mathjax-MathJax-
    HTML5/JavaScript Version of GeoGebra
   </description>
   <installscript>
-commands /home/httpd/html/adm/geogebra/web
+commands
   </installscript>
   <dependencies>
 loncom/html/adm/geogebra/commands;
@@ -4561,7 +4656,7 @@ loncom/html/adm/geogebra/geogebra_html5.
    installs the loncapa config.js file
   </description>
   <installscript>
-commands /home/httpd/html/
+commands
   </installscript>
   <dependencies>
 loncom/html/adm/ckeditor/commands;
@@ -4778,6 +4873,7 @@ JQuery countdown timer Image file for LE
   </filenames>
 </fileglob>
 
+
 <!-- JQuery spellchecker plugin -->
 
 <fileglob>
@@ -4814,7 +4910,7 @@ JQuery countdown timer Image file for LE
   </description>
   <filenames>
     spellchecker_shadow.png;
-    spellchecker.png;
+    spellcheck.png;
   </filenames>
 </fileglob>
 <fileglob>
@@ -4830,6 +4926,7 @@ JQuery countdown timer Image file for LE
   </filenames>
 </fileglob>
 
+
 <fileglob>
   <glob>*.*</glob>
   <sourcedir>loncom/html/adm/jQuery/js/</sourcedir>
@@ -5107,6 +5204,15 @@ Handles a searches inside courses/commun
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonindexcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonindexcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Course/community Indexer
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonmysql.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonmysql.pm</target>
 <categoryname>handler</categoryname>
@@ -5397,15 +5503,6 @@ Displays the Main menu
   <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonremote.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonremote.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Handler to launch and collapse the remote control.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/interface/portfolio.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/portfolio.pm</target>
 <categoryname>handler</categoryname>
@@ -5449,15 +5546,6 @@ Creates horizontal menubar in advanced R
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/homeworkmenu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/homeworkmenu.html</target>
-<categoryname>handler</categoryname>
-<description>
-Homework remote control.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/html/res/adm/pages/chatroom.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/chatroom.html</target>
 <categoryname>handler</categoryname>
@@ -6861,6 +6949,15 @@ tested
   <status>works/verified</status>
 </file>
 <file>
+  <source>loncom/Lond.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/Lond.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     Encapsulates functionality used by lond and lonnet.
+  </description>
+  <status>in progress</status>
+</file>
+<file>
   <source>loncom/LondConnection.pm</source>
   <target dist='default'>home/httpd/lib/perl/LONCAPA/LondConnection.pm</target>
   <categoryname>system file</categoryname>
@@ -6938,6 +7035,16 @@ for socket-based communication between L
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/configuration/Checksumming.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Checksumming.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Provides routine to checksum perl modules, perl scripts, cgi scripts,
+language lexicons, and static configuration file on current server
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/ConfigFileEdit.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
 <categoryname>system file</categoryname>
@@ -6973,6 +7080,8 @@ compiles/tth.so.i386.perl.5.12;
 compiles/tth.so.x86_64.perl.5.12;
 compiles/tth.so.i386.perl.5.14;
 compiles/tth.so.x86_64.perl.5.14;
+compiles/tth.so.i386.perl.5.16;
+compiles/tth.so.x86_64.perl.5.16;
 compiles/tth.so.i386.debian5;
 compiles/tth.so.x86_64.debian5
 </dependencies>
@@ -7341,61 +7450,6 @@ tmcc.tab;
 </fileglob>
 <fileglob>
 <glob>*.gif</glob>
-<sourcedir>loncom/html/adm/lonLCDfont/</sourcedir>
-<targetdir dist='default'>home/httpd/html/adm/lonLCDfont/</targetdir>
-<categoryname>graphic file</categoryname>
-<description>LON-CAPA remote control LCD font</description>
-<filenames>
-0.gif;
-1.gif;
-2.gif;
-3.gif;
-4.gif;
-5.gif;
-6.gif;
-7.gif;
-8.gif;
-9.gif;
-a.gif;
-b.gif;
-c.gif;
-d.gif;
-e.gif;
-f.gif;
-g.gif;
-h.gif;
-i.gif;
-j.gif;
-k.gif;
-l.gif;
-m.gif;
-n.gif;
-o.gif;
-p.gif;
-q.gif;
-r.gif;
-s.gif;
-t.gif;
-u.gif;
-v.gif;
-w.gif;
-x.gif;
-y.gif;
-z.gif;
-ö.gif;
-ä.gif;
-ü.gif;
-ä.gif;
-ö.gif;
-ü.gif;
-colon.gif;
-hyphen.gif;
-slash.gif;
-space.gif;
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/pt/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/pt/</targetdir>
 <categoryname>graphic file</categoryname>
@@ -7425,6 +7479,7 @@ pref_pt.gif;
 prt_pt.gif;
 res_pt.gif;
 roles_pt.gif;
+sbkm_pt.gif;
 spacer_pt.gif;
 sprs_pt.gif;
 src_pt.gif;
@@ -7439,93 +7494,29 @@ vbkm_pt.gif;
 <categoryname>graphic file</categoryname>
 <description>icons used for the entire LON-CAPA user interface</description>
 <filenames>
-alnk.gif;
-anno.gif;
-anot.gif;
-anot2.gif;
-back.gif;
-bchat.gif;
-bkm.gif;
-blog.gif;
-brws.gif;
-catalog.gif;
-ccat.gif;
-ccrs.gif;
 chat.gif;
-chrt.gif;
 close-all-folders.gif;
-close-navigation.gif;
-clst.gif;
-com.gif;
-conf.gif;
-courses.gif;
-cprv.gif;
-crsconf.gif;
-cstr.gif;
-del.gif;
-dempty.gif;
 dempty.gif;
-docs.gif;
 edittoplevel.gif;
-egrd.gif;
 empty.gif;
-enrl.gif;
-eval.gif;
-fdbk.gif;
 feedback.gif;
-forw.gif;
-grds.gif;
-grps.gif;
 group.gif;
 help.gif;
 info.gif;
-keys.gif;
 ledblink.gif;
 ledgreen.gif;
 ledoff.gif;
 ledon.gif;
-ledsend.gif;
-list.gif;
-logout.gif;
-mail.gif;
 mark-discussionentries-read.gif;
-mrk.gif;
-nav.gif;
-new.gif;
 next.gif;
 nothumb.gif;
 open-all-folders.gif;
 open-first-problem.gif;
-pdfupload.gif;
-parm.gif;
-pcstr.gif;
-pgrd.gif;
-port.gif;
-pparm.gif;
-pref.gif;
-prt.gif;
-pub.gif;
 qempty.gif;
-rcrs.gif;
 refresh.gif;
-reload.gif;
-remotebg.gif;
-res.gif;
-roles.gif;
-rsrv.gif;
-rtrv.gif;
-sctr.gif;
 show-all.gif;
 show-incomplete-problems.gif;
-slnk.gif;
-spacer.gif;
-sprs.gif;
-src.gif;
-srvr.gif;
-start-navigation.gif;
-stat.gif;
-subm.gif;
-title.gif;
+star.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -7554,6 +7545,7 @@ pgrd.png;
 pref.png;
 roles.png;
 sprs.png;
+vbkm.png;
 anot.png;
 anot2.png;
 blog.png;
@@ -7570,7 +7562,7 @@ port.png;
 prt.png;
 rcrs.png;
 rsrv.png;
-slnk.png;
+sbkm.png;
 src.png;
 srvr.png;
 subm.png;
@@ -7580,6 +7572,7 @@ thumbsup_novote.png;
 thumbsdown.png;
 thumbsdown_gray.png;
 thumbsdown_novote.png;
+webpage.png;
 back.png;
 catalog.png;
 com.png;
@@ -7603,6 +7596,7 @@ mngcu.png;
 prob_ana.png;
 process-stop.png;
 role_hotlist.png;
+reload.png;
 self_enroll.png;
 survey_rep.png;
 subdocs.png;
@@ -7617,10 +7611,10 @@ uplusr.png;
 <categoryname>graphic file</categoryname>
 <description>graphical icons used in submenus</description>
 <filenames>
-alnk.png;
 aboutme.png;
 addClickerInfoFile.png;
 anonsurveythreshold.png;
+bubblesheet.png;
 ccatconf.png;
 chat.png;
 comblock.png;
@@ -7632,6 +7626,7 @@ dialog-information.png;
 docs-22x22.png;
 document-open.png;
 document-properties.png;
+download_sub.png;
 dropbox.png;
 dump.png;
 edit-copy.png;
@@ -7651,6 +7646,9 @@ folder-new.png;
 folder-new-22x22.png;
 format-justify-fill.png;
 fromfile.png;
+grade_PageFolder.png;
+grade_students.png;
+grading_table.png;
 groupportfolio.png;
 groupportfolioquota.png;
 grp_add.png;
@@ -7679,6 +7677,7 @@ preferences-desktop-theme.png;
 preferences-desktop-wallpaper.png;
 preferences-system-windows.png;
 rcrs-22x22.png;
+receipt_number.png;
 recover.png;
 remotecontrol.png;
 resversion.png;
@@ -7700,6 +7699,7 @@ system-lock-screen.png;
 system-users.png;
 timer.png;
 trck-22x22.png;
+ungrade_sub.png;
 uplcrs.png;
 uploadscores.png;
 verify.png;
@@ -7718,14 +7718,6 @@ wishlist-link-lighter.png;
 </description>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/imgmaps.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/imgmaps.html</target>
-<categoryname>interface file</categoryname>
-<description>
-image maps for the LON-CAPA remote control
-</description>
-</file>
-<file>
 <source>loncom/html/res/adm/pages/index.html</source>
 <target dist='default'>home/httpd/html/res/adm/pages/index.html</target>
 <categoryname>interface file</categoryname>
@@ -7733,14 +7725,6 @@ image maps for the LON-CAPA remote contr
 welcoming page to the LON-CAPA system upon login
 </description>
 </file>
-<file>
-<source>loncom/html/res/adm/pages/menu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/menu.html</target>
-<categoryname>interface file</categoryname>
-<description>
-renders the HTML (including image maps) for the LON-CAPA remote control
-</description>
-</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/indexericons/</sourcedir>
@@ -8306,6 +8290,7 @@ login_count.pl;
 modify_config_files.pl;
 move_construction_spaces.pl;
 parse_scantron.pl;
+rebuild_db_from_hist.pl;
 seed_accesscount.pl;
 stress.pl;
 testkerberos.pl;