--- doc/loncapafiles/loncapafiles.lpml	2012/05/29 01:19:32	1.797.2.10
+++ doc/loncapafiles/loncapafiles.lpml	2013/08/04 14:40:30	1.797.2.36
@@ -2,7 +2,7 @@
  "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
 
-<!-- $Id: loncapafiles.lpml,v 1.797.2.10 2012/05/29 01:19:32 raeburn Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.797.2.36 2013/08/04 14:40:30 raeburn Exp $ -->
 
 <!--
 
@@ -259,7 +259,7 @@ echo '**********************************
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf</targetdir>
   <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/apache2</targetdir>
   <categoryname>standard</categoryname>
   <description>web configuration files</description>
 </directory>
@@ -267,7 +267,7 @@ echo '**********************************
   <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf/rewrites</targetdir>
   <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd/rewrites</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/apache2/rewrites</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/apache2/rewrites</targetdir>
   <categoryname>standard</categoryname>
   <description>
   default configuration files to enable/disable http:// -> https:// rewrites
@@ -283,56 +283,56 @@ echo '**********************************
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/init.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc0.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc1.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc2.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc3.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc4.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc5.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>etc/rc6.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
@@ -607,7 +607,7 @@ extensions</description>
 </directory>
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
-  <targetdir dist='default'>home/httpd/html/adm/ckeditor</targetdir>
+  <targetdir dist='default'>home/httpd/html/ckeditor</targetdir>
   <categoryname>server readonly</categoryname>
   <description>Rich Text Editor</description>
 </directory>
@@ -685,7 +685,42 @@ extensions</description>
   <categoryname>server readonly</categoryname>
   <description>JQuery countdown timer</description>
 </directory>
-  
+ 
+<!-- JQuery spellchecker plugin -->
+
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/spellchecker</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery spellchecker plugin</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/spellchecker/js</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery spellchecker plugin</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/spellchecker/css</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery spellchecker plugin</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/spellchecker/img</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery spellchecker plugin</description>
+</directory>
+
+<!-- JQuery nicescroll plugin -->
+
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/nicescroll</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery nicescroll plugin</description>
+</directory>
 
 <directory dist='default'>
   <protectionlevel>modest_delete</protectionlevel>
@@ -1007,7 +1042,7 @@ each list element consists of only two s
 <file>
 <source>loncom/loncapa.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa.conf</target>
 <categoryname>conf</categoryname>
 <description>
 <p>
@@ -1050,7 +1085,7 @@ MySQL database</td></tr>
 <file type="postaboutversion">
 <source>loncom/loncapa_apache.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_apache.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_apache.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa_apache.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 The goal of this file is to implement all LON-CAPA specific
@@ -1068,9 +1103,22 @@ the www@localhost MySQL password, and br
 </description>
 </file>
 <file>
+<source>loncom/loncapa_apache_local.conf</source>
+<target dist='default'>etc/httpd/conf/loncapa_apache_local.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/startup.pl</target>
+<categoryname>static conf</categoryname>
+<description>
+Documentation file describing how to add domain-specific Apache configuration
+files, e.g., (loncapa_apache_localmsu.conf).
+loncapa_apache_local.conf needs to exist if no domain-specific file has so far
+been created so that Apache 2.4 will start, given that loncapa_apache.conf has:
+Include conf/loncapa_apache_local*.conf
+</description>
+</file>
+<file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/startup.pl</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/startup.pl</target>
 <categoryname>static conf</categoryname>
 <description>
 This file provides initializations for perl handlers.  It adjusts what
@@ -1081,7 +1129,7 @@ well as causing the Apache module to be
 </file>
 <link>
 <linkto>etc/apache2</linkto>
-<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>
+<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>
 etc/apache2/conf
 </target>
 <categoryname>symbolic link</categoryname>
@@ -1092,7 +1140,7 @@ symbolic link to directory /etc/apache2
 <file>
 <source>loncom/rewrites/loncapa_rewrite_off.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa_rewrite.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/loncapa_rewrite.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa_rewrite.conf</target>
 <categoryname>conf</categoryname>
 <description>
 Default rewrite file. 
@@ -1104,7 +1152,7 @@ by setting: RewriteEngine off
 <source>loncom/rewrites/loncapa_rewrite_on.conf</source>
 <target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_on.conf</target>
 <target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_on.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/rewrites/loncapa_rewrite_on.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to enable rewriting of
@@ -1115,7 +1163,7 @@ external requests for http:// to https:/
 <source>loncom/rewrites/loncapa_rewrite_off.conf</source>
 <target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_off.conf</target>
 <target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_off.conf</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/rewrites/loncapa_rewrite_off.conf</target>
 <categoryname>static conf</categoryname>
 <description>
 File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to disable rewriting of
@@ -1280,6 +1328,16 @@ utility cgi script to view software vers
 </description>
 </file>
 <file>
+<source>loncom/cgi/lonmodulecheck.pl</source>
+<target dist='default'>home/httpd/cgi-bin/lonmodulecheck.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to check for differences between currently
+installed versions of LON-CAPA modules and those expected for the
+LON-CAPA release installed on the server.
+</description>
+</file>
+<file>
 <source>loncom/cgi/ping.pl</source>
 <target dist='default'>home/httpd/cgi-bin/ping.pl</target>
 <categoryname>script</categoryname>
@@ -1478,6 +1536,8 @@ man1.jpg;
 man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
+numMultiAnswerUnordered.problem;
+numMultiAnswerUnordered.problem.meta;
 numPrePro.problem;
 numPrePro.problem.meta;
 Plot.problem.meta;
@@ -1541,6 +1601,15 @@ reaction_hint.problem.meta
 </fileglob>
 
 <file>
+  <source>loncom/interface/spellcheck.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/spellcheck.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Ajax handler for the spellcheck Jquery plugin
+  </description>
+  <status>IN testing</status>
+</file>
+<file>
   <source>loncom/homework/insertlist.xml</source>
   <target dist='default'>home/httpd/lonTabs/insertlist.xml</target>
   <categoryname>static conf</categoryname>
@@ -1661,6 +1730,17 @@ List of all domains in the LON-CAPA netw
 </file>
 
 <file>
+  <source>loncom/dns_checksums.tab</source>
+  <target dist='default'>home/httpd/lonTabs/dns_checksums.tab</target>
+  <categoryname>www static conf</categoryname>
+  <description>
+File containing version numbers and checksums for most LON-CAPA perl modules,
+perl scripts, cgi scripts, daemons, and a configuration file in each
+LON-CAPA release, starting with 2.11.0.RC1
+  </description>
+</file>
+
+<file>
   <source>loncom/loncaparevs.tab</source>
   <target dist='default'>home/httpd/lonTabs/loncaparevs.tab</target>
   <categoryname>www conf</categoryname>
@@ -1680,6 +1760,17 @@ File holds paired data -- hostname:lonHo
 </file>
 
 <file>
+  <source>loncom/lonchksums.tab</source>
+  <target dist='default'>home/httpd/lonTabs/lonchksums.tab</target>
+  <categoryname>www conf</categoryname>
+  <description>
+File containing version numbers and checksums for most LON-CAPA perl modules,
+perl scripts, cgi scripts, daemons, and a configuration file for current
+server. Updated by loncron.
+  </description>
+</file>
+
+<file>
 <source>loncom/spare.tab</source>
 <target dist='default'>home/httpd/lonTabs/spare.tab</target>
 <categoryname>conf</categoryname>
@@ -1785,6 +1876,17 @@ file: nohist_courseids.db found in /home
 </description>
 </file>
 <file>
+<source>loncom/misc/checkforupdates.pl</source>
+<target dist='default'>home/httpd/perl/checkforupdates.pl</target>
+<categoryname>script</categoryname>
+<description>
+Perl script run by cron to check:
+(a) for differences between currently installed versions of LON-CAPA modules
+and those expected for the particular LON-CAPA release
+(b) if an updated LON-CAPA release is available from install.loncapa.org
+</description>
+</file>
+<file>
 <source>loncom/debugging_tools/seed_accesscount.pl</source>
 <target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
 <categoryname>script</categoryname>
@@ -2330,6 +2432,15 @@ Handler to put up simple page
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonextresedit.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonextresedit.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to edit external resource.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
   <source>loncom/interface/lonpickcode.pm</source>
   <target dist='default'>home/httpd/lib/perl/Apache/lonpickcode.pm</target>
   <categoryname>handler</categoryname>
@@ -2824,11 +2935,9 @@ subtimpl.gif;
 survey_rep.gif;
 syllabus.gif;
 system-users.gif;
-timer.png;
 turning.gif;
 uploadscores.gif;
 uplusr.gif;
-vbkm.gif;
 verify.gif;
 wishlist.gif;
 wishlist-link.gif;
@@ -3191,6 +3300,7 @@ Docs_Adding_Syllabus.tex;
 Docs_Alternatives.tex;
 Docs_Check_Resource_Versions.tex;
 Docs_Creating_From_Template.tex;
+Docs_Dropbox.tex;
 Docs_Dump_Course_Docs.tex;
 Docs_Export_Course_Docs.tex;
 Docs_Editing_Templated_Pages.tex;
@@ -3209,6 +3319,7 @@ Docs_String_Response.tex;
 Docs_Supplemental.tex;
 Docs_Uploading_From_Harddrive.tex;
 Docs_Verify_Content.tex;
+Docs_Web_Page.tex;
 Domain_Configuration_Auto_Creation.tex;
 Domain_Configuration_Auto_Enrollment.tex;
 Domain_Configuration_Auto_Updates.tex;
@@ -3494,6 +3605,9 @@ Auth_Options.tex;
 Authoring_Math_Editor.tex;
 Contextual_Help.tex;
 Cascading_Parameters.tex;
+Change_Colors.tex;
+Change_Discussion_Display.tex;
+Change_Password.tex;
 Course_Convert_To_CSV.tex;
 Course_Create_Class_List.tex;
 Course_Self_Enrollment.tex;
@@ -3514,6 +3628,25 @@ Generation.tex;
 Metadata_Description.tex;
 Navigation_Screen.tex;
 Parameter_Overview.tex;
+Portfolio_About.tex; 
+Portfolio_AddFiles.tex;
+Portfolio_Catalog.tex;
+Portfolio_ChangeDirectory.tex;
+Portfolio_CreateDirectory.tex;
+Portfolio_DeleteFile.tex;
+Portfolio_FileAction.tex;
+Portfolio_FileList.tex;
+Portfolio_OpenFile.tex;
+Portfolio_RenameFile.tex;
+Portfolio_ShareFile.tex;
+Portfolio_ShareFile_ChangeSetting.tex;
+Portfolio_ShareFile_Conditional.tex;
+Portfolio_ShareFile_SetAccess.tex;
+Portfolio_ShareFile_StopAccess.tex;
+Prefs_About_Me.tex;
+Prefs_Language.tex;
+Prefs_Messages.tex;
+Prefs_Screen_Name_Nickname.tex;
 Problem_Parameters.tex;
 Publishing_Copyright.tex;
 Publishing_Keywords.tex;
@@ -4444,6 +4577,7 @@ jsMath is a Javascript solution to conve
 black.gif;
 blank.gif;
 COPYING.txt;
+FONTSVERSION;
 jsMath-BaKoMa-fonts.js;
 jsMath-autoload.html;
 jsMath-controls.html;
@@ -4472,7 +4606,7 @@ jsMath-old-browsers.js;
     Server side png fonts for use by jsMath
   </description>
   <installscript>
-commands /home/httpd/html/adm
+commands
   </installscript>
   <dependencies>
 loncom/html/adm/jsMath/commands;
@@ -4481,7 +4615,7 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
 </file>
 
 <file>
-  <source>loncom/html/adm/MathJax/mathjax-MathJax-v2.0-20-g07669ac.zip</source>
+  <source>loncom/html/adm/MathJax/mathjax-MathJax-v2.1-241378e.zip</source>
   <target dist='default'>home/httpd/html/adm/MathJax</target>
   <categoryname>script</categoryname>
   <description>
@@ -4491,30 +4625,48 @@ loncom/html/adm/jsMath/jsMath-fonts-1.3.
    unzipping the file, making it look cleaner in the /home/.../adm/ directory
   </description>
   <installscript>
-commands /home/httpd/html/adm/MathJax
+commands
   </installscript>
   <dependencies>
 loncom/html/adm/MathJax/commands;
 loncom/html/adm/MathJax/VERSION;
-loncom/html/adm/MathJax/mathjax-MathJax-v2.0-20-g07669ac.zip;
+loncom/html/adm/MathJax/mathjax-MathJax-v2.1-241378e.zip;
+  </dependencies>
+</file>
+
+<file>
+  <source>loncom/html/adm/geogebra/geogebra_html5.tar.gz</source>
+  <target dist='default'>home/httpd/html/adm/geogebra/web</target>
+  <categoryname>script</categoryname>
+  <description>
+   HTML5/JavaScript Version of GeoGebra
+  </description>
+  <installscript>
+commands
+  </installscript>
+  <dependencies>
+loncom/html/adm/geogebra/commands;
+loncom/html/adm/geogebra/VERSION;
+loncom/html/adm/geogebra/geogebra_html5.tar.gz;
   </dependencies>
 </file>
 
 <file>
-  <source>loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz</source>
-  <target dist='default'>home/httpd/html/adm/ckeditor</target>
+  <source>loncom/html/adm/ckeditor/ckeditor_3.6.6.1.tar.gz</source>
+  <target dist='default'>home/httpd/html/ckeditor</target>
   <categoryname>script</categoryname>
   <description>
    GUI HTML Editor, scripted installation decompress the tarball and
    installs the loncapa config.js file
   </description>
   <installscript>
-commands /home/httpd/html/
+commands
   </installscript>
   <dependencies>
 loncom/html/adm/ckeditor/commands;
-loncom/html/adm/ckeditor/ckeditor_3.6.2.tar.gz;
+loncom/html/adm/ckeditor/3.6.6.1.tar.gz;
 loncom/html/adm/ckeditor/loncapaconfig.js;
+loncom/html/adm/ckeditor/VERSION;
   </dependencies>
 </file>
 
@@ -4698,7 +4850,7 @@ JQuery countdown timer javascript files
 JQuery countdown timer CSS files
   </description>
   <filenames>
-    jquery.countdown.css
+    jquery.countdown.css;
   </filenames>
 </fileglob>
 <fileglob>
@@ -4710,7 +4862,7 @@ JQuery countdown timer CSS files
 JQuery countdown timer Image file for Glowing countdown
   </description>
   <filenames>
-    countdownGlowing.gif
+    countdownGlowing.gif;
   </filenames>
 </fileglob>
 <fileglob>
@@ -4722,11 +4874,61 @@ JQuery countdown timer Image file for Gl
 JQuery countdown timer Image file for LED style countdown
   </description>
   <filenames>
-    countdownLED.png
+    countdownLED.png;
   </filenames>
 </fileglob>
 
+<!-- JQuery spellchecker plugin -->
 
+<fileglob>
+  <glob>*.js</glob>
+  <sourcedir>loncom/html/adm/spellcheck/js/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/spellchecker/js/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JQuery spellchecker plugin
+  </description>
+  <filenames>
+    jquery.spellchecker.min.js;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.css</glob>
+  <sourcedir>loncom/html/adm/spellcheck/css/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/spellchecker/css/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JQuery spellchecker plugin
+  </description>
+  <filenames>
+    spellchecker.css;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.png</glob>
+  <sourcedir>loncom/html/adm/spellcheck/img/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/spellchecker/img/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JQuery spellchecker plugin
+  </description>
+  <filenames>
+    spellchecker_shadow.png;
+    spellcheck.png;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.gif</glob>
+  <sourcedir>loncom/html/adm/spellcheck/img/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/spellchecker/img/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JQuery spellchecker plugin
+  </description>
+  <filenames>
+    spellchecker_bg.gif;
+  </filenames>
+</fileglob>
 
 <fileglob>
   <glob>*.*</glob>
@@ -4780,6 +4982,34 @@ jQuery custom distribution of version 1.
   </filenames>
 </fileglob>
 
+<!-- JQuery nicescroll plugin -->
+
+<fileglob>
+  <glob>*.js</glob>
+  <sourcedir>loncom/html/adm/nicescroll/js/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/nicescroll/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery nicescroll plugin javascript
+  </description>
+  <filenames>
+  jquery.nicescroll.min.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.png</glob>
+  <sourcedir>loncom/html/adm/nicescroll/images/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/nicescroll/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery nicescroll plugin image
+  </description>
+  <filenames>
+  zoomico.png;
+  </filenames>
+</fileglob>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -6017,6 +6247,14 @@ by the URL-related pattern syntax:
   <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/auth/lonnoshib.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonnoshib.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Content handler for /adm/sso when Shibboleth auth is inactive.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
   <source>loncom/html/adm/sso</source>
   <target dist='default'>home/httpd/html/adm/sso</target>
   <categoryname>interface file</categoryname>
@@ -6215,7 +6453,7 @@ Domain information serving.
 <file>
 <source>loncom/mime.types</source>
 <target dist='default'>etc/httpd/conf/mime.types</target>
-<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/apache2/mime.types</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/mime.types</target>
 <categoryname>www static conf</categoryname>
 <description>Expanded mime.types</description>
 </file>
@@ -6285,22 +6523,6 @@ javascript for horizontal menubar in RAT
 </description>
 </file>
 <file>
-<source>rat/client/extpickcode.html</source>
-<target dist='default'>home/httpd/html/adm/rat/extpickcode.html</target>
-<categoryname>interface file</categoryname>
-<description>
-javascript
-</description>
-</file>
-<file>
-<source>rat/client/extpickframe.html</source>
-<target dist='default'>home/httpd/html/adm/rat/extpickframe.html</target>
-<categoryname>interface file</categoryname>
-<description>
-javascript
-</description>
-</file>
-<file>
 <source>rat/client/map.html</source>
 <target dist='default'>home/httpd/html/adm/rat/map.html</target>
 <categoryname>interface file</categoryname>
@@ -6767,6 +6989,15 @@ tested
   <status>works/verified</status>
 </file>
 <file>
+  <source>loncom/Lond.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/Lond.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     Encapsulates functionality used by lond and lonnet.
+  </description>
+  <status>in progress</status>
+</file>
+<file>
   <source>loncom/LondConnection.pm</source>
   <target dist='default'>home/httpd/lib/perl/LONCAPA/LondConnection.pm</target>
   <categoryname>system file</categoryname>
@@ -6844,6 +7075,16 @@ for socket-based communication between L
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/configuration/Checksumming.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Checksumming.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Provides routine to checksum perl modules, perl scripts, cgi scripts,
+language lexicons, and static configuration file on current server
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/ConfigFileEdit.pm</source>
 <target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
 <categoryname>system file</categoryname>
@@ -6879,6 +7120,8 @@ compiles/tth.so.i386.perl.5.12;
 compiles/tth.so.x86_64.perl.5.12;
 compiles/tth.so.i386.perl.5.14;
 compiles/tth.so.x86_64.perl.5.14;
+compiles/tth.so.i386.perl.5.16;
+compiles/tth.so.x86_64.perl.5.16;
 compiles/tth.so.i386.debian5;
 compiles/tth.so.x86_64.debian5
 </dependencies>
@@ -7288,12 +7531,12 @@ w.gif;
 x.gif;
 y.gif;
 z.gif;
-ö.gif;
-ä.gif;
-ü.gif;
 ä.gif;
 ö.gif;
 ü.gif;
+ä.gif;
+ö.gif;
+ü.gif;
 colon.gif;
 hyphen.gif;
 slash.gif;
@@ -7331,7 +7574,6 @@ pref_pt.gif;
 prt_pt.gif;
 res_pt.gif;
 roles_pt.gif;
-sbkm_pt.gif;
 spacer_pt.gif;
 sprs_pt.gif;
 src_pt.gif;
@@ -7346,6 +7588,7 @@ vbkm_pt.gif;
 <categoryname>graphic file</categoryname>
 <description>icons used for the entire LON-CAPA user interface</description>
 <filenames>
+alnk.gif;
 anno.gif;
 anot.gif;
 anot2.gif;
@@ -7413,16 +7656,17 @@ prt.gif;
 pub.gif;
 qempty.gif;
 rcrs.gif;
+refresh.gif;
 reload.gif;
 remotebg.gif;
 res.gif;
 roles.gif;
 rsrv.gif;
 rtrv.gif;
-sbkm.gif;
 sctr.gif;
 show-all.gif;
 show-incomplete-problems.gif;
+slnk.gif;
 spacer.gif;
 sprs.gif;
 src.gif;
@@ -7431,7 +7675,6 @@ start-navigation.gif;
 stat.gif;
 subm.gif;
 title.gif;
-vbkm.gif;
 </filenames>
 </fileglob>
 <fileglob>
@@ -7460,7 +7703,6 @@ pgrd.png;
 pref.png;
 roles.png;
 sprs.png;
-vbkm.png;
 anot.png;
 anot2.png;
 blog.png;
@@ -7477,7 +7719,7 @@ port.png;
 prt.png;
 rcrs.png;
 rsrv.png;
-sbkm.png;
+slnk.png;
 src.png;
 srvr.png;
 subm.png;
@@ -7487,6 +7729,7 @@ thumbsup_novote.png;
 thumbsdown.png;
 thumbsdown_gray.png;
 thumbsdown_novote.png;
+webpage.png;
 back.png;
 catalog.png;
 com.png;
@@ -7524,6 +7767,7 @@ uplusr.png;
 <categoryname>graphic file</categoryname>
 <description>graphical icons used in submenus</description>
 <filenames>
+alnk.png;
 aboutme.png;
 addClickerInfoFile.png;
 anonsurveythreshold.png;
@@ -7531,9 +7775,11 @@ ccatconf.png;
 chat.png;
 comblock.png;
 contact-new.png;
+contact-new-22x22.png;
 coprplot.png;
 crsnew.png;
 dialog-information.png;
+docs-22x22.png;
 document-open.png;
 document-properties.png;
 dropbox.png;
@@ -7543,8 +7789,10 @@ edit-find-replace.png;
 edit-find.png;
 edit-mode-22x22.png;
 edit-redo.png;
+edit-redo-22x22.png;
 edit-select-all.png;
 edit-undo.png;
+edit-undo-22x22.png;
 emblem-photos.png;
 emblem-readonly.png;
 emblem-system.png;
@@ -7562,11 +7810,14 @@ ims.png;
 imsexport.png;
 link-new-22x22.png;
 list-add.png;
+list-add-22x22.png;
 log.png;
 mail-message-new.png;
+mail-message-new-22x22.png;
 mail-reply-all.png;
 mail-reply-sender.png;
 messalog.png;
+move-22x22.png;
 myaboutme.png;
 navigation.png;
 network-workgroup.png;
@@ -7577,27 +7828,35 @@ preferences-desktop-remote-desktop.png;
 preferences-desktop-theme.png;
 preferences-desktop-wallpaper.png;
 preferences-system-windows.png;
+rcrs-22x22.png;
 recover.png;
 remotecontrol.png;
 resversion.png;
+role_hotlist-22x22.png;
+rsrv-22x22.png;
 save-22x22.png;
 scoreupfrm.png;
 selfenrl-queue.png;
+selfenrl-queue-22x22.png;
 sequence.png;
 simple.png;
 simpprob.png;
 start-here.png;
+start-here-22x22.png;
 subtimpl.png;
 syllabus.png;
 symbs.png;
 system-lock-screen.png;
 system-users.png;
+timer.png;
+trck-22x22.png;
 uplcrs.png;
 uploadscores.png;
 verify.png;
 view-mode-22x22.png;
 wishlist.png;
 wishlist-link.png;
+wishlist-link-lighter.png;
 </filenames>
 </fileglob>
 <file>
@@ -7863,7 +8122,7 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
-<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
@@ -7871,7 +8130,7 @@ Controls the launching/halting of lonc,
 </file>
 <link>
 <linkto dist='default'>etc/rc.d/init.d/loncontrol</linkto>
-<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>etc/init.d/loncontrol</linkto>
+<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/init.d/loncontrol</linkto>
 <target dist='default'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
@@ -7881,7 +8140,7 @@ etc/rc.d/rc4.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
-<target='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1'>
+<target='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
 etc/rc.d/rc2.d/K05loncontrol;
@@ -7889,7 +8148,7 @@ etc/rc.d/rc3.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
-<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10'>
+<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>
 etc/rc0.d/K05loncontrol;
 etc/rc1.d/K05loncontrol;
 etc/rc2.d/S95loncontrol;
@@ -7904,13 +8163,13 @@ symbolic links to /etc/rc.d/init.d/lonco
 </description>
 </link>
 
-<file dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
+<file dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 sles9 sles10 sles11">
   <source>loncom/init.d/loncontrol</source>
   <target>etc/rc.d/</target>
   <description>
     setup loncontrol to run at boot
   </description>
-  <installscript dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 sles9 sles10 sles11">
+  <installscript dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 sles9 sles10 sles11">
 -c 'chkconfig --del loncontrol;chkconfig loncontrol 35;chkconfig --list loncontrol'
   </installscript>
   <dependencies>
@@ -8197,6 +8456,7 @@ login_count.pl;
 modify_config_files.pl;
 move_construction_spaces.pl;
 parse_scantron.pl;
+rebuild_db_from_hist.pl;
 seed_accesscount.pl;
 stress.pl;
 testkerberos.pl;