--- doc/loncapafiles/loncapafiles.lpml	2002/04/14 20:18:39	1.115
+++ doc/loncapafiles/loncapafiles.lpml	2013/08/14 03:29:21	1.849
@@ -1,8 +1,8 @@
-<!DOCTYPE lpml PUBLIC "-//TUX/DTD lpml 1.0 Final//EN" "http://lpml.sourceforge.net/DTD/lpml.dtd">
+<!DOCTYPE lpml PUBLIC "-//TUX/DTD lpml 1.0 Final//EN"
+ "http://lpml.sourceforge.net/DTD/lpml.dtd">
 <!-- loncapafiles.lpml -->
-<!-- Scott Harrison -->
 
-<!-- $Id: loncapafiles.lpml,v 1.115 2002/04/14 20:18:39 harris41 Exp $ -->
+<!-- $Id: loncapafiles.lpml,v 1.849 2013/08/14 03:29:21 lira Exp $ -->
 
 <!--
 
@@ -39,7 +39,6 @@ http://www.lon-capa.org/
 <lpml>
 <specialnotices>
 <specialnotice dist='default'>
-!!! REDHAT 6.2 NOTICE !!!
 !!! Sometimes an incorrect /etc/hosts file is incorrectly generated !!!
 !!! This sometimes happens (bad): !!!
 !!! 127.0.0.1  computer1 localhost.localdomain localhost  !!!
@@ -47,22 +46,6 @@ http://www.lon-capa.org/
 !!! 127.0.0.1  localhost.localdomain  localhost !!!
 !!! 35.2.3.80  computer1 computer1.notreal.msu.edu !!!
 </specialnotice>
-<specialnotice dist='redhat7 redhat7.1'>
-!!!!!!!!!  REDHAT 7.*   NOTICE   !!!!!!!!!!!!!!!!!!!!
-!!!!!!!!!  LINE IN Cookie.pm     !!!!!!!!!!!!!!!!!!!!
-!!!!!!!!!  MUST BE REPLACED DUE  !!!!!!!!!!!!!!!!!!!!
-!!!!!!!!!  TO PERL 5.6.0 ERROR   !!!!!!!!!!!!!!!!!!!!
-!!!!!!!!!                        !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
-!!!! The offending line is in CGI/Cookie.pm                           !!
-!!!!                                                                  !!
-!!!! it should be changed from                                        !!
-!!!! $path   = CGI::url(-absolute=>1) unless defined $path;           !!
-!!!! to                                                               !!
-!!!! ($path = $ENV{'SCRIPT_NAME'})=~s![^/]+$!! unless $path;          !!
-!!!!                                                                  !!
-!!!! (This is just below the following line )                         !!
-!!!! # IE requires the path and domain to be present for some reason. !!
-</specialnotice>
 </specialnotices>
 <targetroot>/</targetroot>
 <sourceroot>/home/user/loncapa/</sourceroot>
@@ -99,6 +82,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0444</chmod><chown dist='default'>root:root</chown>
   <abbreviation>static</abbreviation>
 </category>
+<category name="www static conf" type="runtime">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>static</abbreviation>
+</category>
+<category name="www static conf" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>static</abbreviation>
+</category>
 <category name="conf" type="runtime">
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>configurable</abbreviation>
@@ -107,6 +98,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>configurable</abbreviation>
 </category>
+<category name="www conf" type="runtime">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>configurable</abbreviation>
+</category>
+<category name="www conf" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>configurable</abbreviation>
+</category>
 <category name="script" type="runtime">
   <chmod dist='default'>0500</chmod><chown dist='default'>www:www</chown>
   <abbreviation>script</abbreviation>
@@ -123,6 +122,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0400</chmod><chown dist='default'>www:www</chown>
   <abbreviation>graphicfile</abbreviation>
 </category>
+<category name="lexicon file" type="runtime">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>lexicon</abbreviation>
+</category>
+<category name="lexicon file" type="development">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>lexicon</abbreviation>
+</category>
 <category name="doc" type="runtime">
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>systemfile</abbreviation>
@@ -139,6 +146,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0644</chmod><chown dist='default'>root:root</chown>
   <abbreviation>systemfile</abbreviation>
 </category>
+<category name="system script" type="runtime">
+  <chmod dist='default'>0755</chmod><chown dist='default'>root:root</chown>
+  <abbreviation>systemscript</abbreviation>
+</category>
+<category name="system script" type="development">
+  <chmod dist='default'>0755</chmod><chown dist='default'>root:root</chown>
+  <abbreviation>systemscript</abbreviation>
+</category>
 <category name="root script" type="runtime">
   <chmod dist='default'>0700</chmod><chown dist='default'>root:root</chown>
   <abbreviation>rootscript</abbreviation>
@@ -179,6 +194,14 @@ http://www.lon-capa.org/
   <chmod dist='default'>0700</chmod><chown dist='default'>www:www</chown>
   <abbreviation>directory</abbreviation>
 </category>
+<category name="pdf manual" type="runtime">
+  <chmod dist='default'>0444</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>manual</abbreviation>
+</category>
+<category name="pdf manual" type="development">
+  <chmod dist='default'>0644</chmod><chown dist='default'>www:www</chown>
+  <abbreviation>manual</abbreviation>
+</category>
 </categories>
 <rpm>
   <rpmSummary>Basic files for running a LON-CAPA server.</rpmSummary>
@@ -215,118 +238,143 @@ echo '**********************************
 <rpmRequires>
 <item>PreReq: LON-CAPA-setup</item>
 <item>PreReq: apache</item>
-<item>PreReq: /etc/httpd/conf/access.conf</item>
+<item>PreReq: /etc/httpd/conf/httpd.conf</item>
 </rpmRequires>
 </rpm>
 <directories>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for configuration files</description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>etc/atalk</targetdir>
-  <categoryname>standard</categoryname>
-  <description>appletalk configuration files</description>
-</directory>
-<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/cron.d</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for running time-based "jobs"
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/httpd/conf</targetdir>
+  <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/apache2</targetdir>
   <categoryname>standard</categoryname>
   <description>web configuration files</description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>etc/ntp</targetdir>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>etc/httpd/conf/rewrites</targetdir>
+  <targetdir dist='suse9.2 suse9.3 sles9'>etc/httpd/rewrites</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/apache2/rewrites</targetdir>
   <categoryname>standard</categoryname>
-  <description>configuration directory for network time protocol</description>
+  <description>
+  default configuration files to enable/disable http:// -> https:// rewrites
+  </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/pam.d</targetdir>
   <categoryname>standard</categoryname>
   <description>configuration directory for password authentication mechanism
   </description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='redhat7 redhat7.1'>etc/samba</targetdir>
-  <categoryname>standard</categoryname>
-  <description>configuration directory for samba authentication
-  </description>
-</directory>
-<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/init.d</targetdir>
-  <targetdir dist='debian2.2'>etc/init.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/init.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run during system startup</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc0.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc0.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc0.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 0</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc1.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc1.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc1.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 1</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc2.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc2.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc2.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 2</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc3.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc3.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc3.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 3</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc4.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc4.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc4.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 4</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc5.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc5.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc5.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 5</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>etc/rc.d/rc6.d</targetdir>
-  <targetdir dist='debian2.2'>etc/rc6.d</targetdir>
+  <targetdir dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12 suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>etc/rc6.d</targetdir>
   <categoryname>standard</categoryname>
   <description>scripts that run for run-level 6</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lonTabs</targetdir>
   <categoryname>standard</categoryname>
   <description>tab-formatted reference files</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd</targetdir>
   <categoryname>standard</categoryname>
   <description>start of the web server tree</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl</targetdir>
   <categoryname>server readonly</categoryname>
   <description>perl scripts for managing the LON-CAPA system</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/perl/debug</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>perl scripts for debugging the LON-CAPA system</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/perl/manage_dns</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>perl scripts for cluster table management on LON-CAPA DNS servers</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl/logs</targetdir>
   <categoryname>server standard</categoryname>
   <description>location where system performance and error logs are kept
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/lon-status/londchld</targetdir>
   <categoryname>server standard</categoryname>
   <description>
@@ -335,112 +383,466 @@ Used by lond parent to check if children
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/perl/tmp</targetdir>
   <categoryname>server standard</categoryname>
   <description>location where temporary files (for caching) are stored
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/prtspool</targetdir>
   <categoryname>server standard</categoryname>
   <description>for the output of lonprintout.pm
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/zipspool</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for the output of multidownload.pl
+  </description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/captchaspool</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for temporary storage of Captcha images</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/captchadb</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for temporary storage of Captcha codes</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/webdav</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for storage of webdav DAVLock files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/webdav/sessionIDs</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>for storage of webdav session files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lib</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>location of LON-CAPA software modules and
+extensions</description>
+</directory>
+<directory dist='default'>
+  <!-- Must protect localauth.pm/localenroll.pm from extinction. -->
+  <protectionlevel>weak_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA non web mod-perl handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/Apache</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of LON-CAPA web mod-perl handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lib/perl/Apache/localize</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>location of LON-CAPA MakeText translation files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lib/perl/HTML</targetdir>
   <categoryname>server readonly</categoryname>
   <description>location of HTML specific perl module fixes and additions
   </description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>home/httpd/lonIDs</targetdir>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lib/perl/LONCAPA</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>location of HTML specific perl module fixes and additions
+  </description>
+</directory>
+<directory dist='default'>
+   <protectionlevel>modest_delete</protectionlevel>
+ <targetdir dist='default'>home/httpd/lonIDs</targetdir>
   <categoryname>server standard</categoryname>
   <description>cookie jar</description>
 </directory>
 <directory dist='default'>
+   <protectionlevel>modest_delete</protectionlevel>
+ <targetdir dist='default'>home/httpd/scantron</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>uploaded scantron forms directory</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/sockets</targetdir>
   <categoryname>server standard</categoryname>
   <description>lonc's sockets</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/sockets/delayed</targetdir>
   <categoryname>server standard</categoryname>
   <description>lonc's sockets (delayed)</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/cgi-bin</targetdir>
   <categoryname>standard</categoryname>
   <description>location of cgi scripts</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/cgi-bin/mimetexcache</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>location of cgi scripts</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html</targetdir>
   <categoryname>server standard</categoryname>
   <description>location of web-accessible file tree</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/priv</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>root of hosted authors' construction spaces tree</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res</targetdir>
   <categoryname>server standard</categoryname>
   <description>root of resource tree</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/userfiles</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>root for user uploaded files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm</targetdir>
   <categoryname>server readonly</categoryname>
   <description>unauthenticated resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/rat</targetdir>
   <categoryname>server readonly</categoryname>
   <description>home of the rat</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/fonts</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>fonts</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation</description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>home/httpd/html/adm/help/api</targetdir>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jme</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JME support files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jmol</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Jmol files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/geogebra</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>GeoGebra files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/MathJax</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>MathJax files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jsMath support files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/extensions</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jsMath extension files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/uncompressed</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jsMath files (uncompressed)</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/plugins</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jsMath plugin files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/ckeditor</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Rich Text Editor</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/js</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- js files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/images</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>jQuery JavaScript library -- css images</description>
+</directory>
+
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/jpicker</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery color picker JavaScript library</description>
+</directory>
+<directory dist='default'>
+  <protetionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/jpicker/js</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery color picker JavaScript library javascript files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/jpicker/css</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery color picker JavaScript library CSS files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/jpicker/images</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Jquery color picker javascript library image files</description>
+</directory>
+
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/countdown</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery countdown timer</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/countdown/js</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery countdown timer</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/countdown/css</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery countdown timer</description>
+</directory>
+  
+<!-- JQuery spellchecker plugin -->
+
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/spellchecker</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery spellchecker plugin</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/spellchecker/js</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery spellchecker plugin</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/spellchecker/css</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery spellchecker plugin</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/spellchecker/img</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery spellchecker plugin</description>
+</directory>
+
+<!-- JQuery nicescroll plugin -->
+
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>/home/httpd/html/adm/nicescroll</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>JQuery nicescroll plugin</description>
+</directory>
+
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet directory and popups</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet classes</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/HotEqn</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet HotEqn classes and jar</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/Display</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet display</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/lang</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet languages</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/formats</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Formula editor applet classes formats (LaTeX, Maxima, etc)</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/helper</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>XML specifications for helpers</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/gif</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation gif files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/eps</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation eps files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/tex</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation tex files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/tex/ru</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Russian online help documentation tex files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/tex/de</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>German online help documentation tex files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/png</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>online help documentation png files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/lib/perl</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation for the LON-CAPA programming
 interface</description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>home/httpd/html/adm/help/api/Apache</targetdir>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/help/lib/perl/Apache
+  </targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation for the LON-CAPA programming
 interface, Apache (mod_perl) handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/help/scripts</targetdir>
   <categoryname>server readonly</categoryname>
   <description>online help documentation for the LON-CAPA programming
 interface, Apache (mod_perl) handlers</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonIcons</targetdir>
   <categoryname>server readonly</categoryname>
   <description>graphic widgets</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonMisc</targetdir>
   <categoryname>server readonly</categoryname>
   <description>miscellaneous resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/lonKaputt</targetdir>
   <categoryname>server readonly</categoryname>
   <description>error warnings and icons</description>
 </directory>
+
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/lonUsers</targetdir>
   <categoryname>server standard</categoryname>
   <description>Home directories of local users.  There is a five-tier
@@ -456,79 +858,153 @@ roles.db) which specify the roles and pr
 LON-CAPA system.</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lonCerts</targetdir>
+  <categoryname>server standard</categoryname>
+  <description>
+    Directory for Certificates for SSL and local auth modes
+  </description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/adm/MathML</targetdir>
   <categoryname>server readonly</categoryname>
   <description>mathematics markup language resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/lib/templates</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Resource library
+  </description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/includes</targetdir>
   <categoryname>server readonly</categoryname>
   <description>files useful for including within customized scripting
   </description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/includes/templates
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description>template files useful for customized scripts</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/lon-status</targetdir>
   <categoryname>server standard</categoryname>
-  <description>status reports</description>
+  <description>status reports; online logs are kept that
+are viewable over the world-wide web</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages</targetdir>
   <categoryname>server readonly</categoryname>
   <description>web user interface resources</description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>home/httpd/html/res/adm/pages/bookmarkmenu
-  </targetdir>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/adm/pages/pt</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>web user interface resources - Portuguese</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse</targetdir>
   <categoryname>server readonly</categoryname>
-  <description>bookmark user interface code</description>
+  <description>web user interface resources</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/lonDomLogos</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Logos for LON-CAPA domains</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/lonTabs/lonDomColors</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Designs for LON-CAPA domains</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>home/httpd/html/adm/lonInterFace</targetdir>
+  <categoryname>server readonly</categoryname>
+  <description>Page headers and graphical interface files</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/annotations
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description></description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
   <targetdir dist='default'>home/httpd/html/res/adm/pages/indexericons
   </targetdir>
   <categoryname>server readonly</categoryname>
   <description>icons that help depict the file system (outdated)</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/lib/perl5/site_perl/5.005</targetdir>
   <targetdir dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0</targetdir>
-  <targetdir dist='debian2.2'>usr/local/lib/perl/5.6.0</targetdir>
+  <targetdir dist='redhat8 redhat9'>usr/lib/perl5/site_perl/5.8.0</targetdir>
+  <targetdir dist='debian5'>usr/local/lib/perl/5.10.0</targetdir>
+  <targetdir dist='debian'>usr/local/lib/perl/5.6.0</targetdir>
   <categoryname>standard</categoryname>
   <description>system perl tree (usually present on linux systems)
   </description>
 </directory>
 <directory dist='default'>
-  <targetdir dist='default'>usr/local/bin</targetdir>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>usr/local/loncapa/bin</targetdir>
+  <categoryname>standard</categoryname>
+  <description>local binary files for loncapa</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>usr/local/loncapa/doc</targetdir>
+  <categoryname>standard</categoryname>
+  <description>local documentation files for loncapa</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>usr/local/loncapa/doc/conf_examples</targetdir>
+  <categoryname>standard</categoryname>
+  <description>examples of configuration files for secondary
+ services</description>
+</directory>
+<directory dist='default'>
+  <protectionlevel>modest_delete</protectionlevel>
+  <targetdir dist='default'>usr/local/loncapa/sbin</targetdir>
   <categoryname>standard</categoryname>
-  <description>local binary files</description>
+  <description>local "auxiliary" binary files for loncapa</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/local/man/man1</targetdir>
   <categoryname>standard</categoryname>
   <description>local manual pages</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/man/man1</targetdir>
   <categoryname>standard</categoryname>
   <description>manual pages</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/man/man3</targetdir>
   <categoryname>standard</categoryname>
   <description>manual pages</description>
 </directory>
 <directory dist='default'>
+  <protectionlevel>never_delete</protectionlevel>
   <targetdir dist='default'>usr/sbin</targetdir>
   <categoryname>standard</categoryname>
   <description>standard linux directory for superuser executables</description>
@@ -537,8 +1013,8 @@ LON-CAPA system.</description>
 <files>
 <file>
 <source>loncom/krb.conf</source>
-<target dist='default'>etc/krb.conf</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/krb.conf</target>
+<categoryname>static conf</categoryname>
 <description>
 which Kerberos server to contact for specified Kerberos domains
 </description>
@@ -561,27 +1037,26 @@ each list element consists of only two s
 <file>
 <source>loncom/loncapa.conf</source>
 <target dist='default'>etc/httpd/conf/loncapa.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa.conf</target>
 <categoryname>conf</categoryname>
 <description>
+<p>
 The goal of this file is to implement all LON-CAPA specific
-customization of the Apache web server.
-</description>
-</file>
-<file>
-<source>loncom/access.conf</source>
-<target dist='default'>etc/httpd/conf/access.conf</target>
-<categoryname>conf</categoryname>
-<description>
-This file has two major functions.
-For the Apache web server, it defines a global
-access configuration which defines what server options (Indexes", "Includes",
-"FollowSymLinks", "ExecCGI", or "MultiViews") are associated
-with specific directories ("/", "/home/httpd/html", "/home/httpd/cgi-bin",
-and "/usr/doc").  For the LON-CAPA network server and perl module
-handlers, it defines machine specific settings (lonHostID, lonRole,
-lonAdmEMail, lonDefDomain, lonLoadLim, lonExpire, and lonReceipt)
-and internal machine settings for specific directories, socket ports,
-and browser detection logic.
+customization of the Apache web server (most all of these values
+require manual input from the system administrator at some point).
+The values in this file, as opposed to loncapa_apache.conf, are
+meant to be machine and institution specific.
+</p>
+<p>
+For the LON-CAPA network server and perl module
+handlers, it defines machine specific settings including lonHostID, lonRole,
+lonAdmEMail, lonDefDomain, lonLoadLim, lonExpire, and lonReceipt.
+</p>
+<p>
+This file should not be viewable by regular users of the system.
+Only root and www should be able to view the contents of this file
+since lonReceipt is sensitive.
+</p>
 </description>
 <note>
 <b>configure</b>
@@ -602,25 +1077,109 @@ MySQL database</td></tr>
 </table>
 </note>
 </file>
+<file type="postaboutversion">
+<source>loncom/loncapa_apache.conf</source>
+<target dist='default'>etc/httpd/conf/loncapa_apache.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa_apache.conf</target>
+<categoryname>static conf</categoryname>
+<description>
+The goal of this file is to implement all LON-CAPA specific
+customization of the Apache web server that does not require
+user input.
+
+For the Apache web server, it defines a global
+access configuration which defines what server options (Indexes", "Includes",
+"FollowSymLinks", "ExecCGI", or "MultiViews") are associated
+with specific directories ("/", "/home/httpd/html", "/home/httpd/cgi-bin",
+and "/usr/doc").  For the LON-CAPA network server and perl module
+handlers, it defines 
+and internal machine settings for specific directories, socket ports,
+the www@localhost MySQL password, and browser detection logic.
+</description>
+</file>
+<file>
+<source>loncom/loncapa_apache_local.conf</source>
+<target dist='default'>etc/httpd/conf/loncapa_apache_local.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/startup.pl</target>
+<categoryname>static conf</categoryname>
+<description>
+Documentation file describing how to add domain-specific Apache configuration
+files, e.g., (loncapa_apache_localmsu.conf).
+loncapa_apache_local.conf needs to exist if no domain-specific file has so far
+been created so that Apache 2.4 will start, given that loncapa_apache.conf has:
+Include conf/loncapa_apache_local*.conf
+</description>
+</file>
 <file>
 <source>loncom/startup.pl</source>
 <target dist='default'>etc/httpd/conf/startup.pl</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/startup.pl</target>
 <categoryname>static conf</categoryname>
 <description>
 This file provides initializations for perl handlers.  It adjusts what
 the module path space is (so as to include /home/httpd/lib/perl/Apache) as
 well as causing the Apache module to be used for every perl handler.
-<tt>startup.pl</tt> is invoked by <tt>access.conf</tt>.
+<tt>startup.pl</tt> is invoked by <tt>loncapa_apache.conf</tt>.
+</description>
+</file>
+<link>
+<linkto>etc/apache2</linkto>
+<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>
+etc/apache2/conf
+</target>
+<categoryname>symbolic link</categoryname>
+<description>
+symbolic link to directory /etc/apache2 from /etc/apache2/conf
+</description>
+</link>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_off.conf</source>
+<target dist='default'>etc/httpd/conf/loncapa_rewrite.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/loncapa_rewrite.conf</target>
+<categoryname>conf</categoryname>
+<description>
+Default rewrite file. 
+Default is to disable rewriting of external requests for http:// to https:// 
+by setting: RewriteEngine off
+</description>
+</file>
+<file>
+<source>loncom/rewrites/loncapa_rewrite_on.conf</source>
+<target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_on.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/rewrites/loncapa_rewrite_on.conf</target>
+<categoryname>static conf</categoryname>
+<description>
+File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to enable rewriting of
+external requests for http:// to https:// 
 </description>
 </file>
 <file>
-<source>loncom/publisher/thesaurus.dat</source>
-<target dist='default'>home/httpd/lonTabs/thesaurus.dat</target>
+<source>loncom/rewrites/loncapa_rewrite_off.conf</source>
+<target dist='default'>etc/httpd/conf/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles9'>etc/apache/rewrites/loncapa_rewrite_off.conf</target>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/rewrites/loncapa_rewrite_off.conf</target>
 <categoryname>static conf</categoryname>
 <description>
-Custom Thesaurus file for LON-CAPA, in the format
-word@wordID@frequency@relatedwordID:frequency,relatedwordID:frequency,...
+File to copy to /etc/apache2/loncapa_rewrite.conf (SuSE/SLES/Debian/Ubuntu LTS) or to  /etc/httpd/conf/loncapa_rewrite.conf to disable rewriting of
+external requests for http:// to https:// 
+</description>
+</file>
+<file>
+<source>loncom/thesaurus/thesaurus.db</source>
+<target dist='default'>home/httpd/lonTabs/thesaurus.db</target>
+<categoryname>system file</categoryname>
+<description>
+Thesaurus database file to be built from loncom/thesaurus/rawkey.txt
 </description>
+<build trigger='always run'>
+loncom/thesaurus/build_thesaurus_wrapper.sh
+</build>
+<dependencies>
+rawkey.txt;
+build_thesaurus_db.pl;
+build_thesaurus_wrapper.sh
+</dependencies>
 </file>
 <file>
 <source>loncom/interface/mydesk.tab</source>
@@ -639,8 +1198,16 @@ Descriptive list of file extensions, and
 </description>
 </file>
 <file>
-<source>loncom/cgi/barcode.gif</source>
-<target dist='default'>home/httpd/cgi-bin/barcode.gif</target>
+<source>loncom/interface/filecategories.tab</source>
+<target dist='default'>home/httpd/lonTabs/filecategories.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+Descriptive list of file extensions and broad categorization.
+</description>
+</file>
+<file>
+<source>loncom/cgi/barcode.png</source>
+<target dist='default'>home/httpd/cgi-bin/barcode.png</target>
 <categoryname>script</categoryname>
 <description>
 Dynamically outputs a barcode based on a CGI passed encode=BARCODEVALUE
@@ -648,6 +1215,38 @@ parameter.
 </description>
 </file>
 <file>
+<source>loncom/cgi/decompress.pl</source>
+<target dist='default'>home/httpd/cgi-bin/decompress.pl</target>
+<categoryname>script</categoryname>
+<description>
+Decompresses an archive into its files inside of the construction space
+</description>
+</file>
+<file>
+<source>loncom/cgi/takeoffline.pl</source>
+<target dist='default'>home/httpd/cgi-bin/takeoffline.pl</target>
+<categoryname>script</categoryname>
+<description>
+Take machine offline
+</description>
+</file>
+<file>
+<source>loncom/cgi/takeonline.pl</source>
+<target dist='default'>home/httpd/cgi-bin/takeonline.pl</target>
+<categoryname>script</categoryname>
+<description>
+Take machine online
+</description>
+</file>
+<file>
+<source>loncom/cgi/thumbnail.gif</source>
+<target dist='default'>home/httpd/cgi-bin/thumbnail.gif</target>
+<categoryname>script</categoryname>
+<description>
+Produces a thumbnail image of the url given
+</description>
+</file>
+<file>
 <source>loncom/cgi/clusterstatus.pl</source>
 <target dist='default'>home/httpd/cgi-bin/clusterstatus.pl</target>
 <categoryname>script</categoryname>
@@ -656,8 +1255,56 @@ utility cgi script to view status of clu
 </description>
 </file>
 <file>
-<source>loncom/cgi/graph.gif</source>
-<target dist='default'>home/httpd/cgi-bin/graph.gif</target>
+<source>loncom/cgi/translator.pl</source>
+<target dist='default'>home/httpd/cgi-bin/translator.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to enter translations
+</description>
+</file>
+<file>
+<source>loncom/build/system_dependencies/perltest.pl</source>
+<target dist='default'>home/httpd/cgi-bin/perltest.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to view status of perl modules
+</description>
+</file>
+<file>
+<source>loncom/build/system_dependencies/cpan_distributions.txt</source>
+<target dist='default'>home/httpd/cgi-bin/cpan_distributions.txt</target>
+<categoryname>interface file</categoryname>
+<description>
+utility cgi script to view status of perl modules
+</description>
+</file>
+<file>
+  <source>loncom/cgi/loncgi.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/loncgi.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a common interface to LON-CAPA cookies and environment.
+  </description>
+</file>
+<file>
+  <source>loncom/lonmap.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmap.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a module to read course files into hashes.
+  </description>
+</file>
+<file>
+  <source>loncom/cgi/lonauthcgi.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonauthcgi.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides routines used in authorization of server status CGI scripts 
+  </description>
+</file>
+<file>
+<source>loncom/cgi/graph.png</source>
+<target dist='default'>home/httpd/cgi-bin/graph.png</target>
 <categoryname>script</categoryname>
 <description>
 Dynamically outputs a graph especially for lonstatistics.pm.
@@ -676,6 +1323,16 @@ utility cgi script to view software vers
 </description>
 </file>
 <file>
+<source>loncom/cgi/lonmodulecheck.pl</source>
+<target dist='default'>home/httpd/cgi-bin/lonmodulecheck.pl</target>
+<categoryname>script</categoryname>
+<description>
+utility cgi script to check for differences between currently 
+installed versions of LON-CAPA modules and those expected for the 
+LON-CAPA release installed on the server.
+</description>
+</file>
+<file>
 <source>loncom/cgi/ping.pl</source>
 <target dist='default'>home/httpd/cgi-bin/ping.pl</target>
 <categoryname>script</categoryname>
@@ -691,6 +1348,20 @@ cgi-script to ping other server
 Dynamically outputs X-Y plots with point, line, etc functions.
 </description>
 </file>
+<link>
+  <linkto>home/httpd/cgi-bin/plot.gif</linkto>
+  <target dist='default'>home/httpd/cgi-bin/plot.png</target>
+  <categoryname>symbolic link</categoryname>
+  <description>symbolic link for plot.png to point at plot.gif</description>
+</link>
+<file>
+<source>loncom/cgi/imagechoice.pl</source>
+<target dist='default'>home/httpd/cgi-bin/imagechoice.pl</target>
+<categoryname>script</categoryname>
+<description>
+Helper to select image coordinates in writing homework involving images.
+</description>
+</file>
 <file>
 <source>loncom/interface/printout.pl</source>
 <target dist='default'>home/httpd/cgi-bin/printout.pl</target>
@@ -704,6 +1375,21 @@ Alias /prtspool/ /home/httpd/prtspool/
 as well as a /home/httpd/prtspool directory.
 </note>
 </file>
+
+<file>
+  <source>loncom/interface/multidownload.pl</source>
+  <target dist='default'>home/httpd/cgi-bin/multidownload.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+cgi script to generate a zip file of all student submissions
+  </description>
+  <note>
+Depends on srm.conf entry:
+Alias /zipspool/ /home/httpd/zipspool/
+as well as a /home/httpd/zipspool directory.
+  </note>
+</file>
+
 <file>
 <source>loncom/cgi/metadata_keywords.pl</source>
 <target dist='default'>home/httpd/cgi-bin/metadata_keywords.pl</target>
@@ -722,6 +1408,65 @@ coil,loop,field,magnetic
 and simply prints this text-only (no markup) to the browser
 </description>
 </file>
+<file>
+<source>loncom/cgi/metadata_harvest.pl</source>
+<target dist='default'>home/httpd/cgi-bin/metadata_harvest.pl</target>
+<categoryname>script</categoryname>
+<description>
+a cgi-script (not mod_perl), which contacts MySQL and pulls
+out all records in "|"-separated format.
+To be used by very simple harvesting engines.
+</description>
+</file>
+<file>
+<source>loncom/homework/simpleproblem.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/simpleproblem.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for DOCS "Simple Problem"
+</description>
+</file>
+<file>
+<source>loncom/homework/simpleproblem.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/simpleproblem.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for DOCS "Simple Problem"
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/DropBox.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/DropBox.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for DOCS "Drop Box"
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/DropBox.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/DropBox.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for DOCS "Drop Box"
+</description>
+</file>
+
+<file>
+<source>loncom/homework/templates/examupload.problem</source>
+<target dist='default'>home/httpd/html/res/lib/templates/examupload.problem</target>
+<categoryname>interface file</categoryname>
+<description>
+Generic resource for score upload
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/examupload.problem.meta</source>
+<target dist='default'>home/httpd/html/res/lib/templates/examupload.problem.meta</target>
+<categoryname>interface file</categoryname>
+<description>
+Meta file for generic resource for score upload
+</description>
+</file>
 <fileglob>
 <glob>*.*</glob>
 <sourcedir>loncom/homework/templates/</sourcedir>
@@ -732,16 +1477,80 @@ home/httpd/html/res/adm/includes/templat
 Template files for generating new resources.
 </description>
 <filenames>
+answerdependent.problem;
+answerdependent.problem.meta;
 blank.library;
 blank.library.meta;
 blank.problem;
 blank.problem.meta;
-formula.problem;
-formula.problem.meta;
+blank.task;
+blank.task.meta;
+dynamicgraph.problem;
+dynamicgraph.problem.meta;
+extreme.problem;
+extreme.problem.meta;
+simple.task;
+simple.task.meta;
+multiple_instance.task;
+multiple_instance.task.meta;
+MultipleAnswerEither.problem;
+MultipleAnswerEither.problem.meta;
+MultipleAnswerUnordered.problem;
+MultipleAnswerUnordered.problem.meta;
+optional_criteria.task;
+optional_criteria.task.meta;
+ClickImageExample.problem;
+ClickImageExample.problem.meta;
+custom_equation.problem;
+custom_equation.problem.meta;
+customhints.problem;
+customhints.problem.meta;
+custompartial.problem;
+custompartial.problem.meta;
+CustomResponse.problem;
+CustomResponse.problem.meta;
+customunit.problem;
+customunit.problem.meta;
+Essay.problem;
+Essay.problem.meta;
+examupload.problem;
+examupload.problem.meta;
+functionplotone.problem;
+functionplotone.problem.meta;
+functionplottwo.problem;
+functionplottwo.problem.meta;
+functionplotback.problem;
+functionplotback.problem.meta;
+functionplotvector.problem;
+functionplotvector.problem.meta;
+HintFormula.problem;
+HintFormula.problem.meta;
+HintMathResponse.problem;
+HintMathResponse.problem.meta;
+man1.jpg;
+man1.jpg.meta;
 numerical.problem;
 numerical.problem.meta;
+numMultiAnswerUnordered.problem;
+numMultiAnswerUnordered.problem.meta;
+numPrePro.problem;
+numPrePro.problem.meta;
+Plot.problem.meta;
+Plot_curve.problem;
+Plot_curve.problem.meta;
+Plot_data.problem;
+Plot_data.problem.meta;
+Rnumerical.problem;
+Rnumerical.problem.meta;
 RadioResponse.problem;
 RadioResponse.problem.meta;
+RandomLabelExample.problem;
+RandomLabelExample.problem.meta;
+randomvalueradio.problem;
+randomvalueradio.problem.meta;
+sampleexternal.problem;
+sampleexternal.problem.meta;
+sampleexternal.pl;
 SelectFromOptions-4ConceptGoups.problem;
 SelectFromOptions-4ConceptGoups.problem.meta;
 SelectFromOptions-5ConceptGoups.problem;
@@ -754,22 +1563,56 @@ SelectFromOptions-8ConceptGoups.problem;
 SelectFromOptions-8ConceptGoups.problem.meta;
 SelectFromOptions-Simple.problem;
 SelectFromOptions-Simple.problem.meta;
+SimpleStringResponse.problem.meta;
 script.library;
 script.library.meta;
-SimpleStringResponse.problem;
-SimpleStringResponse.problem.meta;
+SimpleFormula.problem;
+SimpleFormula.problem.meta;
+SimpleFormulaCAS.problem;
+SimpleFormulaCAS.problem.meta;
 StringResponse.problem;
-StringResponse.problem.meta
+StringResponse.problem.meta;
+stringPrePro.problem;
+stringPrePro.problem.meta;
+SimpleMatching.problem;
+SimpleMatching.problem.meta;
+SimpleMathResponse.problem;
+SimpleMathResponse.problem.meta;
+SimpleMathResponseR.problem;
+SimpleMathResponseR.problem.meta;
+SimpleRank.problem;
+SimpleRank.problem.meta;
+SimpleTrueFalse.problem;
+SimpleTrueFalse.problem.meta;
+organic.problem;
+organic.problem.meta;
+organic_hint.problem;
+organic_hint.problem.meta;
+reaction.problem;
+reaction.problem.meta;
+reaction_hint.problem;
+reaction_hint.problem.meta
 </filenames>
 </fileglob>
+
 <file>
-<source>loncom/homework/insertlist.tab</source>
-<target dist='default'>home/httpd/lonTabs/insertlist.tab</target>
-<categoryname>static conf</categoryname>
-<description>
+  <source>loncom/interface/spellcheck.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/spellcheck.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Ajax handler for the spellcheck Jquery plugin
+  </description>
+  <status>IN testing</status>
+</file>
+<file>
+  <source>loncom/homework/insertlist.xml</source>
+  <target dist='default'>home/httpd/lonTabs/insertlist.xml</target>
+  <categoryname>static conf</categoryname>
+  <description>
 Describes what tags are allowed inside other tags.
-</description>
+  </description>
 </file>
+
 <file>
 <source>CAPA/JavaTools/GLabel.class</source>
 <target dist='default'>home/httpd/html/res/adm/includes/GLabel.class
@@ -783,8 +1626,8 @@ Built from Glabel.java.  Still working o
 </note>
 </file>
 <file>
-<source>loncom/interface/default.assesscalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.assesscalc
+<source>loncom/interface/spreadsheet/default_assesscalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_assesscalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -792,8 +1635,8 @@ Default spreadsheet for individual asses
 </description>
 </file>
 <file>
-<source>loncom/interface/default.studentcalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.studentcalc
+<source>loncom/interface/spreadsheet/default_studentcalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_studentcalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -801,8 +1644,8 @@ Default spreadsheet for assessment of st
 </description>
 </file>
 <file>
-<source>loncom/interface/default.classcalc</source>
-<target dist='default'>home/httpd/html/res/adm/includes/default.classcalc
+<source>loncom/interface/spreadsheet/default_classcalc</source>
+<target dist='default'>home/httpd/html/res/adm/includes/default_classcalc
 </target>
 <categoryname>static conf</categoryname>
 <description>
@@ -828,14 +1671,100 @@ and privileges available in the network
 </description>
 </file>
 <file>
-<source>loncom/hosts.tab</source>
-<target dist='default'>home/httpd/lonTabs/hosts.tab</target>
+<source>loncom/managers.tab</source>
+<target dist='default'>home/httpd/lonTabs/managers.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+List of machines allowed to pass along updates to dns_hosts.tab and dns_domain.tab
+</description>
+</file>
+<file>
+<source>loncom/misc/releaseslist.xml</source>
+<target dist='default'>home/httpd/lonTabs/releaseslist.xml</target>
 <categoryname>static conf</categoryname>
 <description>
-List of all machines in the LON-CAPA network.  Relates <tt>lonHostID</tt> to
-<tt>lonDefDomain</tt> and <u>IP address</u>.
+XML specification of LON-CAPA version required for certain parameters,
+response types and course containers. Used to determine if a course
+needs a minimum LON-CAPA version to function correctly.   
 </description>
 </file>
+
+<file type="private">
+  <source>loncom/hosts.tab</source>
+  <target dist='default'>home/httpd/lonTabs/hosts.tab</target>
+  <categoryname>www static conf</categoryname>
+  <description>
+List of Machines in the lon-capa network.
+  </description>
+</file>
+<file type="private">
+  <source>loncom/domain.tab</source>
+  <target dist='default'>home/httpd/lonTabs/domain.tab</target>
+  <categoryname>www static conf</categoryname>
+  <description>
+List of domains in the LON-CAPA network.
+Lists the name name of the domain and any multiple config options.
+  </description>
+</file>
+
+<file type="private">
+  <source>loncom/dns_hosts.tab</source>
+  <target dist='default'>home/httpd/lonTabs/dns_hosts.tab</target>
+  <categoryname>www static conf</categoryname>
+  <description>
+List of all machines in the lon-capa network that is served up by the DNS mechanism.
+  </description>
+</file>
+<file type="private">
+  <source>loncom/dns_domain.tab</source>
+  <target dist='default'>home/httpd/lonTabs/dns_domain.tab</target>
+  <categoryname>www static conf</categoryname>
+  <description>
+List of all domains in the LON-CAPA network that is served up by the DNS mechanism.
+  </description>
+</file>
+
+<file>
+  <source>loncom/dns_checksums.tab</source>
+  <target dist='default'>home/httpd/lonTabs/dns_checksums.tab</target>
+  <categoryname>www static conf</categoryname>
+  <description>
+File containing version numbers and checksums for most LON-CAPA perl modules,
+perl scripts, cgi scripts, daemons, and a configuration file in each 
+LON-CAPA release, starting with 2.11.0.RC1
+  </description>
+</file>
+
+<file>
+  <source>loncom/loncaparevs.tab</source>
+  <target dist='default'>home/httpd/lonTabs/loncaparevs.tab</target>
+  <categoryname>www conf</categoryname>
+  <description>
+File holds LON-CAPA version installed on all servers in the LON-CAPA network. Updated
+ by loncron. 
+  </description>
+</file>
+
+<file>
+  <source>loncom/serverhomeIDs.tab</source>
+  <target dist='default'>home/httpd/lonTabs/serverhomeIDs.tab</target>
+  <categoryname>www conf</categoryname>
+  <description>
+File holds paired data -- hostname:lonHostID for all servers in the LON-CAPA network (useful for determining which domain should control server settings for a multi-domain server). Updated by loncron.
+  </description>
+</file>
+
+<file>
+  <source>loncom/lonchksums.tab</source>
+  <target dist='default'>home/httpd/lonTabs/lonchksums.tab</target>
+  <categoryname>www conf</categoryname>
+  <description>
+File containing version numbers and checksums for most LON-CAPA perl modules,
+perl scripts, cgi scripts, daemons, and a configuration file for current
+server. Updated by loncron.
+  </description>
+</file>
+
 <file>
 <source>loncom/spare.tab</source>
 <target dist='default'>home/httpd/lonTabs/spare.tab</target>
@@ -859,16 +1788,15 @@ in <tt>access.conf</tt>
 <file>
 <source>loncom/htpasswd</source>
 <target dist='default'>home/httpd/lonTabs/htpasswd</target>
-<categoryname>conf</categoryname>
+<categoryname>static conf</categoryname>
 <description>
 Basic auth password to access /lon-status and /server-status
 </description>
 </file>
 <file>
 <source>loncom/smb.conf</source>
-<target dist='default'>etc/smb.conf</target>
-<target dist='redhat7 redhat7.1'>etc/samba/smb.conf</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/smb.conf</target>
+<categoryname>static conf</categoryname>
 <description>
 configuration file to make LON-CAPA server file space accessible to network
 neighborhood
@@ -876,8 +1804,8 @@ neighborhood
 </file>
 <file>
 <source>loncom/ntp.conf</source>
-<target dist='default'>etc/ntp.conf</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/ntp.conf</target>
+<categoryname>static conf</categoryname>
 <description>
 which NTP server to contact for information (XNTP3 standard)
 </description>
@@ -893,6 +1821,14 @@ Example:<br /><nobr /><tt>server ntp.msu
 </note>
 </file>
 <file>
+  <source>loncom/misc/archive_old_files.pl</source>
+  <target dist='default'>home/httpd/perl/archive_old_files.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+Batch script for compressing older .db files
+  </description>
+</file>
+<file>
 <source>loncom/metadata_database/searchcat.pl</source>
 <target dist='default'>home/httpd/perl/searchcat.pl</target>
 <categoryname>script</categoryname>
@@ -901,40 +1837,107 @@ Batch script for updating SQL metadata d
 </description>
 </file>
 <file>
-<source>loncom/lonc</source>
-<target dist='default'>home/httpd/perl/lonc</target>
+<source>loncom/metadata_database/cleanup_database.pl</source>
+<target dist='default'>home/httpd/perl/cleanup_database.pl</target>
 <categoryname>script</categoryname>
 <description>
-proxy server
+Batch script for removing temporary tables from the SQL metadata database.
 </description>
 </file>
 <file>
-<source>doc/man/lonc.1</source>
-<target dist='default'>usr/man/man1/lonc.1</target>
-<categoryname>doc</categoryname>
-<description>man page for lonc</description>
-<build trigger='always run'>
-loncom/build/pod2man.sh ../lonc &gt; ../../doc/man/lonc.1 &amp;&amp; \
-echo 'manifying lonc'
-</build>
-<status>works/unverified</status>
-<dependencies>
-../../loncom/lonc
-</dependencies>
+<source>loncom/metadata_database/parse_activity_log.pl</source>
+<target dist='default'>home/httpd/perl/parse_activity_log.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script to copy activy logs from native format into the SQL metadata database.
+</description>
 </file>
 <file>
-<source>doc/scripts/lonc.html</source>
-<target dist='default'>home/httpd/html/adm/help/scripts/lonc.html</target>
-<categoryname>doc</categoryname>
-<description>POD-derived page for lonc</description>
-<build trigger='always run'>
-loncom/build/pod2html.sh ../lonc &gt; ../../doc/scripts/lonc.html &amp;&amp; \
-echo 'pod2html lonc'
-</build>
-<status>works/unverified</status>
-<dependencies>
-../../loncom/lonc
-</dependencies>
+<source>loncom/misc/cleanup_file_caches.pl</source>
+<target dist='default'>home/httpd/perl/cleanup_file_caches.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for removing files not accessed within 24 hours from the 
+/home/httpd/prtspool and /home/httpd/html/userfiles/ directories.
+</description>
+</file>
+<file>
+<source>loncom/misc/refresh_courseids_db.pl</source>
+<target dist='default'>home/httpd/perl/refresh_courseids_db.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for refreshing course information in aggregating GDBM 
+file: nohist_courseids.db found in /home/httpd/lonUsers on library servers.
+</description>
+</file>
+<file>
+<source>loncom/misc/checkforupdates.pl</source>
+<target dist='default'>home/httpd/perl/checkforupdates.pl</target>
+<categoryname>script</categoryname>
+<description>
+Perl script run by cron to check:
+(a) for differences between currently installed versions of LON-CAPA modules
+and those expected for the particular LON-CAPA release
+(b) if an updated LON-CAPA release is available from install.loncapa.org  
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/seed_accesscount.pl</source>
+<target dist='default'>home/httpd/perl/seed_accesscount.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script for moving access count data from nohist_resevaldata.db to
+nohist_accesscount.db.
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/modify_config_files.pl</source>
+<target dist='default'>home/httpd/perl/modify_config_files.pl</target>
+<categoryname>script</categoryname>
+<description>
+Batch script to ensure certain LONCAPA configuration parameters for yum and
+MySQL are included in their configuration files.
+</description>
+</file>
+<file>
+  <source>loncom/debugging_tools/updateclasslist.pl</source>
+  <target dist='default'>home/httpd/perl/debug/updateclasslist.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+propagate the ids in ids.db to all course classlists
+  </description>
+</file>
+<file>
+<source>loncom/lonmemcached</source>
+<target dist='default'>home/httpd/perl/lonmemcached</target>
+<categoryname>script</categoryname>
+<description>
+small script to handle the start up of the memcached daemon
+</description>
+</file>
+<file>
+  <source>loncom/lonmaxima</source>
+  <target dist='default'>home/httpd/perl/lonmaxima</target>
+  <categoryname>script</categoryname>
+  <description>
+    manages the existance and talking to the maxima processes
+  </description>
+</file>
+<file>
+  <source>loncom/lonr</source>
+  <target dist='default'>home/httpd/perl/lonr</target>
+  <categoryname>script</categoryname>
+  <description>
+    manages the existance and talking to the R processes
+  </description>
+</file>
+<file>
+    <source>loncom/request_ssl_key.sh</source>
+    <target dist='default'>home/httpd/lonCerts/request_ssl_key.sh</target>
+    <categoryname>script</categoryname>
+    <description>
+        Script that requests a Lon-CAPA ssl key.
+    </description>
 </file>
 <file>
 <source>loncom/lond</source>
@@ -983,12 +1986,42 @@ echo 'pod2html lond'
 </dependencies>
 </file>
 <file>
+<source dist='default'>loncom/build/CHECKRPMS</source>
+<target dist='default'>home/httpd/cgi-bin/CHECKRPMS</target>
+<categoryname>script</categoryname>
+<description>CGI script that checks status of RPMs</description>
+<dependencies>
+loncom/build/CHECKRPMS
+</dependencies>
+</file>
+<file>
 <source>loncom/cgi/loncron.pl</source>
 <target dist='default'>home/httpd/cgi-bin/loncron.pl</target>
 <categoryname>script</categoryname>
 <description>CGI script that starts and pipes output of loncron</description>
 </file>
 <file>
+<source>loncom/cgi/userstatus.pl</source>
+<target dist='default'>home/httpd/cgi-bin/userstatus.pl</target>
+<categoryname>script</categoryname>
+<description>CGI script that shows users currently on machine</description>
+</file>
+<file>
+<source>loncom/cgi/listdomconfig.pl</source>
+<target dist='default'>home/httpd/cgi-bin/listdomconfig.pl</target>
+<categoryname>script</categoryname>
+<description>CGI script to display domain configuration as plain text.
+For use on the primary library server for a domain. Access control uses
+routines in lonauthcgi.pm
+</description>
+</file>
+<file>
+<source>loncom/homework/templates/sampleexternal.pl</source>
+<target dist='default'>home/httpd/cgi-bin/sampleexternal.pl</target>
+<categoryname>script</categoryname>
+<description>Sample External Response Script</description>
+</file>
+<file>
 <source>loncom/loncron</source>
 <target dist='default'>home/httpd/perl/loncron</target>
 <categoryname>script</categoryname>
@@ -1029,6 +2062,33 @@ echo 'pod2html lonsql'
 </dependencies>
 </file>
 <file>
+  <source>loncom/CrGrant.pl</source>
+  <target dist='default'>home/httpd/perl/CrGrant.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script used to verify and grant an SSL certificate to a Lon-CAPA host
+  </description>
+  <status>in progress</status>
+</file>
+<file>
+  <source>loncom/CrGenerate.pl</source>
+  <target dist='default'>home/httpd/perl/CrGenerate.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script used to request an SSL certificate for a Lon-CAPA host.
+  </description>
+  <status>in progress</status>
+</file>
+<file>
+  <source>loncom/apachereload</source>
+  <target dist='default'>home/httpd/perl/apachereload</target>
+  <categoryname>setuid script</categoryname>
+  <description>
+    Script to let www reload the webserver
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/lcpasswd</source>
 <target dist='default'>home/httpd/perl/lcpasswd</target>
 <categoryname>setuid script</categoryname>
@@ -1039,6 +2099,16 @@ user passwords.
 <status>being updated</status>
 </file>
 <file>
+<source>loncom/lcinstallfile</source>
+<target dist='default'>home/httpd/perl/lcinstallfile</target>
+<categoryname>setuid script</categoryname>
+<description>
+Set uid file that allows lond to install files in 
+lonTab which is normally owned by root.
+</description>
+<status>under construction</status>
+</file>
+<file>
 <source>loncom/pwchange</source>
 <target dist='default'>home/httpd/perl/pwchange</target>
 <categoryname>setuid script</categoryname>
@@ -1048,14 +2118,23 @@ Allows www to change user passwords.
 <status>being updated</status>
 </file>
 <file>
-<source>loncom/lcuseradd</source>
-<target dist='default'>home/httpd/perl/lcuseradd</target>
+<source>loncom/lciptables</source>
+<target dist='default'>home/httpd/perl/lciptables</target>
 <categoryname>setuid script</categoryname>
 <description>
-Coordinates the system services and files in order to allow lond to add a
-new user.
+Calls iptables to update firewall settings for port used for internal
+LON-CAPA communication to receive traffic from other servers in cluster
 </description>
-<status>being updated</status>
+<status>New file</status>
+</file>
+<file>
+<source>loncom/lchttpdlogs</source>
+<target dist='default'>home/httpd/perl/lchttpdlogs</target>
+<categoryname>setuid script</categoryname>
+<description>
+script called by loncron to tail latest web server access and error logs.
+</description>
+<status>works/verified</status>
 </file>
 <file>
 <source>loncom/lcuserdel</source>
@@ -1096,6 +2175,22 @@ GNU General Public License.  Long live t
 </description>
 </file>
 <file>
+<source>loncom/license/httpi.license</source>
+<target dist='default'>home/httpd/html/adm/httpi.license</target>
+<categoryname>interface file</categoryname>
+<description>
+HTTPi webserver license
+</description>
+</file>
+<file>
+<source>loncom/license/httpi.readme</source>
+<target dist='default'>home/httpd/html/adm/httpi.readme</target>
+<categoryname>interface file</categoryname>
+<description>
+HTTPi webserver readme 
+</description>
+</file>
+<file type="postaboutversion">
 <source>loncom/license/about.html</source>
 <target dist='default'>home/httpd/html/adm/about.html</target>
 <categoryname>interface file</categoryname>
@@ -1121,6 +2216,31 @@ Interface file for responding to imprope
 </description>
 </file>
 <file>
+<source>loncom/html/adm/notinit.html</source>
+<target dist='default'>home/httpd/html/adm/notinit.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Interface file for responding to accessing uploaded resources without
+re-initializing course.
+</description>
+</file>
+<file>
+<source>loncom/html/adm/overloaded.txt</source>
+<target dist='default'>home/httpd/html/adm/overloaded.txt</target>
+<categoryname>interface file</categoryname>
+<description>
+Interface file for responding to overload situations.
+</description>
+</file>
+<file>
+<source>loncom/html/adm/loginproblems.html</source>
+<target dist='default'>home/httpd/html/adm/loginproblems.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Help page for login problems.
+</description>
+</file>
+<file>
 <source>loncom/xml/physnet.sty</source>
 <target dist='default'>home/httpd/html/res/adm/includes/physnet.sty</target>
 <categoryname>static conf</categoryname>
@@ -1138,7 +2258,7 @@ The relevant conditions and metadata to
 </description>
 </file>
 <file>
-<source>loncom/misc/un_keyword.tab</source>
+<source>loncom/thesaurus/un_keyword.tab</source>
 <target dist='default'>home/httpd/html/res/adm/includes/un_keyword.tab</target>
 <categoryname>conf</categoryname>
 <description>
@@ -1147,6 +2267,22 @@ content.
 </description>
 </file>
 <file>
+<source>loncom/homework/scantronformat.tab</source>
+<target dist='default'>home/httpd/lonTabs/scantronformat.tab</target>
+<categoryname>conf</categoryname>
+<description>
+Different configs for scantron input files.
+</description>
+</file>
+<file>
+<source>loncom/homework/default_scantronformat.tab</source>
+<target dist='default'>home/httpd/lonTabs/default_scantronformat.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+Default configurations for scantron input files.
+</description>
+</file>
+<file>
 <source>loncom/publisher/packages.tab</source>
 <target dist='default'>home/httpd/lonTabs/packages.tab</target>
 <categoryname>static conf</categoryname>
@@ -1165,6 +2301,14 @@ Table which contains list of copyright p
 </description>
 </file>
 <file>
+<source>loncom/publisher/source_copyright.tab</source>
+<target dist='default'>home/httpd/html/res/adm/includes/source_copyright.tab</target>
+<categoryname>static conf</categoryname>
+<description>
+Table which contains list of source copyright possibilities for educational resources.
+</description>
+</file>
+<file>
 <source>loncom/publisher/language.tab</source>
 <target dist='default'>home/httpd/lonTabs/language.tab</target>
 <categoryname>static conf</categoryname>
@@ -1192,6 +2336,188 @@ Edit handler for rat maps; TeX content h
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/londocs.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/londocs.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for course documents
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonchat.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonchat.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for chat
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonchatfetch.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonchatfetch.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for periodically fetch new lines of chat
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/longroupchat.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/longroupchat.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for generation of frameset for display of group chat
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonannounce.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonannounce.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up announcements and calendar
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonsyllabus.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsyllabus.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up syllabus
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonrss.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrss.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for adding to and displaying RSS
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/homework/lonsimpleproblemedit.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsimpleproblemedit.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to set parameters for simple homework problems
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonsimplepage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsimplepage.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up simple page
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonextresedit.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonextresedit.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to edit external resource.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/interface/lonpickcode.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpickcode.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler to pick a CODE from the list of possible CODEs
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickstudent.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickstudent.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a student from classlist
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a courseid from a list of courses
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickauthor.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickauthor.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for a DC to pick an author from a list of authors in the domain for an ad hoc CA role
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickresource.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickresource.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a resource or folder from the course contents
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonpickuser.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpickuser.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to pick a user from a directory search
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/loncourserespicker.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncourserespicker.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Provides interface to select resources/folders from a course
+(e.g., for IMS export, or choosing content for exam blocking).
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/londependencies.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/londependencies.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Provides interface for uploading, replacing and deleting files which
+are (or used to be) dependencies for an HTML page uploaded directly to a course.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonbulletin.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonbulletin.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up bulletin board
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonaboutme.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonaboutme.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to put up personal info
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/loncfile.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncfile.pm</target>
 <categoryname>handler</categoryname>
@@ -1202,6 +2528,1270 @@ construction space menu.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/publisher/testbankimport.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/testbankimport.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to convert plain text questions in a testbank file to LON-CAPA problems.
+Called by selecting testbank option when uploading file to construction space.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsimport.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsimport.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to import courses from other CMSs packaged in IMS 1.1 content package
+format into LON-CAPA Construction space.
+Called by selecting IMS package option when uploading file to construction space.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsimportdocs.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsimportdocs.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility to import courses from other CMSs packaged in IMS 1.1 content package
+format into a LON-CAPA course via DOCS.
+Called using Import IMS package button displayed in Special documents column in DOCS display.  
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsprocessor.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsprocessor.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains routines used by imsimport handlers when importing contents of IMS 
+packages into construction space, or into a course directly via DOCS.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/imspackages/imsexport.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imsexport.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Routines used in londocs to export templated files to an IMS package.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonhelp.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhelp.pm</target>
+<categoryname>handler</categoryname>
+<description>
+The .tex file help handler.
+</description>
+<status>works/unverified</status>
+<build trigger='always run'>
+loncom/html/adm/help/buildMakeWrapper
+</build>
+<dependencies>
+Makefile;
+buildMakeWrapper
+</dependencies>
+</file>
+<file>
+<source>loncom/html/adm/help/help.png</source>
+<target dist='default'>home/httpd/html/adm/help/help.png</target>
+<categoryname>interface file</categoryname>
+<description>
+help icon
+</description>
+</file>
+<file>
+<source>loncom/html/adm/help/abouthelp.html</source>
+<target dist='default'>home/httpd/html/adm/help/abouthelp.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Index file for the help system
+</description>
+</file>
+<file>
+<source>loncom/html/adm/help/nohelptopic.html</source>
+<target dist='default'>home/httpd/html/adm/help/nohelptopic.html</target>
+<categoryname>interface file</categoryname>
+<description>
+Page of links to help manuals - displayed when inline help is missing for a specific topic.
+</description>
+</file>
+<file>
+<source>doc/help/author.manual.access.tex</source>
+<target dist='default'>home/httpd/html/adm/help/tex/author.manual.access.tex
+</target>
+<categoryname>interface file</categoryname>
+<description>
+The pseudo-LaTeX file to allow people to read the author's manual online, with
+a somewhat clumsy interface.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>doc/help/course.manual.access.tex</source>
+<target dist='default'>home/httpd/html/adm/help/tex/course.manual.access.tex
+</target>
+<categoryname>interface file</categoryname>
+<description>
+The pseudo-LaTeX file to allow people to read the course administrator's
+manual online, with a somewhat clumsy interface.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>doc/help/domain.manual.access.tex</source>
+<target dist='default'>home/httpd/html/adm/help/tex/domain.manual.access.tex
+</target>
+<categoryname>interface file</categoryname>
+<description>
+The pseudo-LaTeX file to allow people to read the domain coordination
+manual online, with a somewhat clumsy interface.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>doc/help/author.manual.ps</source>
+<target dist='default'>home/httpd/html/adm/help/author.manual.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+The postscript Author's Manual
+</description>
+<status>works/unverified</status>
+<dependencies>
+doc/help/author.manual.texxml;
+doc/help/latexSplitter.py;
+doc/help/rebuildLabelHash.pl;
+doc/help/render.texxml.pl;
+doc/help/simpleEdit.py;
+doc/help/texxml2indextex.pl;
+doc/help/texxml2latex.pl;
+loncom/build/buildHelp.sh;
+loncom/build/help_graphics_converter.pl
+</dependencies>
+</file>
+<file>
+<source>doc/help/author.manual.pdf</source>
+<target dist='default'>home/httpd/html/adm/help/author.manual.pdf</target>
+<categoryname>pdf manual</categoryname>
+<description>
+The PDF Author's Manual
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>doc/help/course.manual.ps</source>
+<target dist='default'>home/httpd/html/adm/help/course.manual.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+The postscript Course Manual
+</description>
+<status>works/unverified</status>
+<dependencies>
+doc/help/course.manual.texxml;
+doc/help/latexSplitter.py;
+doc/help/rebuildLabelHash.pl;
+doc/help/render.texxml.pl;
+doc/help/simpleEdit.py;
+doc/help/texxml2indextex.pl;
+doc/help/texxml2latex.pl;
+loncom/build/buildHelp.sh;
+loncom/build/help_graphics_converter.pl
+</dependencies>
+</file>
+<file>
+<source>doc/help/course.manual.pdf</source>
+<target dist='default'>home/httpd/html/adm/help/course.manual.pdf</target>
+<categoryname>pdf manual</categoryname>
+<description>
+The PDF Course Manual
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>doc/help/domain.manual.ps</source>
+<target dist='default'>home/httpd/html/adm/help/domain.manual.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+The postscript Domain Manual
+</description>
+<status>works/unverified</status>
+<dependencies>
+doc/help/domain.manual.texxml;
+doc/help/latexSplitter.py;
+doc/help/rebuildLabelHash.pl;
+doc/help/render.texxml.pl;
+doc/help/simpleEdit.py;
+doc/help/texxml2indextex.pl;
+doc/help/texxml2latex.pl;
+loncom/build/buildHelp.sh;
+loncom/build/help_graphics_converter.pl
+</dependencies>
+</file>
+<file>
+<source>doc/help/domain.manual.pdf</source>
+<target dist='default'>home/httpd/html/adm/help/domain.manual.pdf</target>
+<categoryname>pdf manual</categoryname>
+<description>
+The PDF Domain Manual
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.html</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.html</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT in HTML
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.html.meta</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.html.meta</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT in HTML metadata
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.library</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.library</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT library
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.library.meta</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.library.meta</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT library metadata
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.problem</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.problem</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT problem
+  </description>
+</file>
+<file>
+  <source>loncom/html/adm/help/ext_examples.problem.meta</source>
+  <target dist='default'>home/httpd/html/adm/help/ext_examples.problem.meta</target>
+  <categoryname>interface file</categoryname>
+  <description>
+    Examples for using &EXT problem metadata
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lontemplate.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lontemplate.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler to create templates
+  </description>
+  <status>works/unverified</status>
+</file>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/gif/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/gif/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Gif files for the help system
+</description>
+<filenames>
+Authoring_Dynamic_Plot_Axis_Labels.gif;
+Authoring_Dynamic_Plot_Axis_Tics_border.gif;
+Authoring_Dynamic_Plot_Axis_Tics_minor.gif;
+Authoring_Dynamic_Plot_Axis_Tics_nomirror.gif;
+Authoring_Dynamic_Plot_Axis_Tics_x_axis.gif;
+Authoring_Dynamic_Plot_Title_X_Y_Label.gif;
+BT_ScreenshotCriteria.gif;
+BT_ScreenshotQuestion.gif;
+BT_ScreenshotVariable.gif;
+flowchartBridgeTask.gif;
+Dynamic_Replication_Change.gif;
+Dynamic_Replication_Request.gif;
+Load_Balance_Example.gif;
+LONCAPA_Network_Diagram2.gif;
+LONCAPA_Network_Diagram.gif;
+Map_Example.gif;
+Resource_Assembly.gif;
+aboutme.gif;
+addClickerInfoFile.gif;
+anno.gif;
+anot.gif;
+anot2.gif;
+authorRemote.gif;
+author_example_directory.gif;
+author_new_content.gif;
+author_top_menu.gif;
+bchat.gif;
+blog.gif;
+catalog.gif;
+ccat.gif;
+chat.gif;
+chrt.gif;
+com.gif;
+constructionSpace.gif;
+constructionSpaceForPublishing.gif;
+coprplot.gif;
+cprv.gif;
+creatingANewCourse.gif;
+creatingNewProblemResource.gif;
+crsconf.gif;
+docs.gif;
+document-open.gif;
+document-properties.gif;
+dump.gif;
+dynamic_piecewise.gif;
+dynamic_piecewise2.gif;
+dynamic_plot.gif;
+dynamic_plot2.gif;
+edit-find-replace.gif;
+edit-redo.gif;
+edit-undo.gif;
+emblem-photos.gif;
+eval.gif;
+extres.gif;
+fdbk.gif;
+feedback.gif;
+formulaResponse.gif;
+FPRexamples.gif;
+fromfile.gif;
+grds.gif;
+grps.gif;
+help.gif;
+html_page_plaintext.gif;
+html_page_richtext.gif;
+list-add.gif;
+login.gif;
+lonhelpheader.gif;
+mail-message-new.gif;
+mail-reply-all.gif;
+mainCourseDocuments.gif;
+mapAdvancedEditorNew.gif;
+mapClickedStart.gif;
+mapEditFirstClick.gif;
+mapEditInitial.gif;
+mapEditingButton.gif;
+mapEditorDirectoryBrowser.gif;
+mapEditorResourceChosen.gif;
+mapEditorSelection.gif;
+mapInsertResource.gif;
+mapNewResource.gif;
+mapSecondWindowSecondResource.gif;
+mapSimpleEditor.gif;
+mapStraightened.gif;
+mapTwoResources.gif;
+messalog.gif;
+mngcu.gif;
+multiple_choice_problem_menu.gif;
+nav.gif;
+navigation.gif;
+network-workgroup.gif;
+new.gif;
+numericalResponse1.gif;
+numericalResponseEditor.gif;
+numericalResponseSlopeProblem.gif;
+numericalResponseVarInText.gif;
+optionResponseEditing.gif;
+optionResponseProblem.gif;
+page.gif;
+parm.gif;
+pgrd.gif;
+port.gif;
+pref.gif;
+preferences-desktop-font.gif;
+preferences-desktop-locale.gif;
+preferences-desktop-theme.gif;
+problem_editing_colorful.gif;
+problem_editing_xml.gif;
+problem_testing.gif;
+prt.gif;
+publishMetadata.gif;
+radioResponse2.gif;
+radioResponseHint.gif;
+rcrs.gif;
+res.gif;
+resversion.gif;
+roles.gif;
+rsrv.gif;
+scoreupfrm.gif;
+sctr.gif;
+self_enroll.gif;
+simple.gif;
+simpprob.gif;
+smallHelp.gif;
+spreadsheet_hierarchy.gif;
+sprs.gif;
+src.gif;
+stat.gif;
+stringResponseEditor.gif;
+studentInterface.gif;
+subdocs.gif;
+subtimpl.gif;
+survey_rep.gif;
+syllabus.gif;
+system-users.gif;
+turning.gif;
+uploadscores.gif;
+uplusr.gif;
+vbkm.gif;
+verify.gif;
+wishlist.gif;
+wishlist-link.gif;
+iclicker.gif;
+interwrite1.gif;
+interwrite2.gif;
+interwrite3.gif;
+interwrite4.gif;
+interwrite5.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/eps/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/eps/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+EPS files for the help system
+</description>
+<filenames>
+Authoring_Dynamic_Plot_Axis_Labels.eps;
+Authoring_Dynamic_Plot_Axis_Tics_border.eps;
+Authoring_Dynamic_Plot_Axis_Tics_minor.eps;
+Authoring_Dynamic_Plot_Axis_Tics_nomirror.eps;
+Authoring_Dynamic_Plot_Axis_Tics_x_axis.eps;
+Authoring_Dynamic_Plot_Title_X_Y_Label.eps;
+BT_ScreenshotCriteria.eps;
+BT_ScreenshotQuestion.eps;
+BT_ScreenshotVariable.eps;
+flowchartBridgeTask.eps;
+Dynamic_Replication_Change.eps;
+Dynamic_Replication_Request.eps;
+Load_Balance_Example.eps;
+LONCAPA_Network_Diagram2.eps;
+LONCAPA_Network_Diagram.eps;
+Map_Example.eps;
+Resource_Assembly.eps;
+aboutme.eps;
+addClickerInfoFile.eps;
+anno.eps;
+anot.eps;
+anot2.eps;
+authorRemote.eps;
+author_example_directory.eps;
+author_new_content.eps;
+author_top_menu.eps;
+bchat.eps;
+blog.eps;
+catalog.eps;
+ccat.eps;
+chat.eps;
+chrt.eps;
+com.eps;
+constructionSpace.eps;
+constructionSpaceForPublishing.eps;
+coprplot.eps;
+cprv.eps;
+creatingANewCourse.eps;
+creatingNewProblemResource.eps;
+crsconf.eps;
+docs.eps;
+document-open.eps;
+document-properties.eps;
+dump.eps;
+dynamic_piecewise.eps;
+dynamic_piecewise2.eps;
+dynamic_plot.eps;
+dynamic_plot2.eps;
+edit-find-replace.eps;
+edit-redo.eps;
+edit-undo.eps;
+emblem-photos.eps;
+eval.eps;
+extres.eps;
+fdbk.eps;
+feedback.eps;
+formulaResponse.eps;
+FPRexamples.eps;
+fromfile.eps;
+grds.eps;
+grps.eps;
+help.eps;
+html_page_plaintext.eps;
+html_page_richtext.eps;
+list-add.eps;
+lonhelpheader.eps;
+login.eps;
+mail-message-new.eps;
+mail-reply-all.eps;
+mainCourseDocuments.eps;
+mapAdvancedEditorNew.eps;
+mapClickedStart.eps;
+mapEditFirstClick.eps;
+mapEditInitial.eps;
+mapEditingButton.eps;
+mapEditorDirectoryBrowser.eps;
+mapEditorResourceChosen.eps;
+mapEditorSelection.eps;
+mapInsertResource.eps;
+mapNewResource.eps;
+mapSecondWindowSecondResource.eps;
+mapSimpleEditor.eps;
+mapStraightened.eps;
+mapTwoResources.eps;
+messalog.eps;
+mngcu.eps;
+multiple_choice_problem_menu.eps;
+nav.eps;
+navigation.eps;
+network-workgroup.eps;
+new.eps;
+numericalResponse1.eps;
+numericalResponseEditor.eps;
+numericalResponseSlopeProblem.eps;
+numericalResponseVarInText.eps;
+optionResponseEditing.eps;
+optionResponseProblem.eps;
+page.eps;
+parm.eps;
+pgrd.eps;
+port.eps;
+preferences-desktop-font.eps;
+preferences-desktop-locale.eps;
+preferences-desktop-theme.eps;
+problem_editing_colorful.eps;
+problem_editing_xml.eps;
+problem_testing.eps;
+prt.eps;
+publishMetadata.eps;
+radioResponse2.eps;
+radioResponseHint.eps;
+rcrs.eps;
+res.eps;
+resversion.eps;
+roles.eps;
+rsrv.eps;
+scoreupfrm.eps;
+sctr.eps;
+self_enroll.eps;
+simple.eps;
+simpprob.eps;
+smallHelp.eps;
+spreadsheet_hierarchy.eps;
+sprs.eps;
+src.eps;
+stat.eps;
+stringResponseEditor.eps;
+studentInterface.eps;
+subdocs.eps;
+subtimpl.eps;
+survey_rep.eps;
+syllabus.eps;
+system-users.eps;
+turning.eps;
+uploadscores.eps;
+uplusr.eps;
+vbkm.eps;
+verify.eps;
+wishlist.eps;
+wishlist-link.eps;
+iclicker.eps;
+interwrite1.eps;
+interwrite2.eps;
+interwrite3.eps;
+interwrite4.eps;
+interwrite5.eps;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/tex/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/tex/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Tex files for the help system
+</description>
+<filenames>
+About_Authors_Manual.tex;
+About_Bombs.tex;
+About_Communication.tex;
+About_Developers_Manual.tex;
+About_Numerical_and_Formula_Response.tex;
+About_Symbs.tex;
+all_functions_table.tex;
+adaptive_hints.tex;
+Additional_Help.tex;
+Ambiguous_Reference.tex;
+Analysis_Analyze_Over.tex;
+Analyze_Problem.tex;
+Answer_Date.tex;
+Answer_Display_Overview.tex;
+Annotation.tex;
+Authentication.tex;
+Auth_Options.tex;
+Authoring_Adding_Pictures.tex;
+Authoring_DataResponse.tex;
+Authoring_Dynamic_Plot_Axes.tex;
+Authoring_Dynamic_Plot_Color_Selection.tex;
+Authoring_Dynamic_Plot_Curve_Data.tex;
+Authoring_Dynamic_Plot_Curve_Function.tex;
+Authoring_Dynamic_Plot_Curve.tex;
+Authoring_Dynamic_Plot_Gnuplot.tex;
+Authoring_Dynamic_Plot_Key.tex;
+Authoring_Dynamic_Plot_Label.tex;
+Authoring_Dynamic_Plot_Linestyle.tex;
+Authoring_Dynamic_Plot.tex;
+Authoring_Dynamic_Plot_Tics.tex;
+Authoring_Dynamic_Plot_Title_X_Y_Label.tex;
+Authoring_ExternalResponse.tex;
+Authoring_Foil_Structure_Tags.tex;
+Authoring_Hint_Tags.tex;
+Authoring_HTML_vs_Tex.tex;
+Authoring_ImageResponse.tex;
+Authoring_Input_Tags.tex;
+Authoring_Internal_Tags.tex;
+Authoring_Intro.tex;
+Authoring_Library_Scripts.tex
+Authoring_Math_Editor.tex;
+Authoring_NumericalResponse.tex;
+Authoring_OptionResponse.tex;
+Authoring_Output_Tags.tex;
+Authoring_Pictures_EPS.tex;
+Authoring_Piecewise_Plot.tex;
+Authoring_RadiobuttonResponse.tex;
+Authoring_Response_Attributes.tex;
+Authoring_Responseparam_Parameter.tex;
+Authoring_Response_Tag_Intro.tex;
+Authoring_Scripting_Tags.tex;
+Authoring_Spreadsheet.tex;
+Authoring_Structure_Tags.tex;
+Authoring_Surveys.tex;
+Authoring_XML_Intro.tex;
+Author_LON-CAPA_Introduction.tex;
+Author_Manual_Title_Page.tex;
+Author_Menu.tex;
+Author_Numerical_and_Formula.tex;
+Author_Remote_Control.tex;
+Batch_Creation.tex;
+BridgeTask_About.tex;
+BridgeTask_Conditions.tex;
+BridgeTask_Create.tex;
+BridgeTask_EditModeFinishing.tex;
+BridgeTask_EditModeIntroduction.tex;
+BridgeTask_EditModeQuestion.tex;
+BridgeTask_EditMode.tex;
+BridgeTask_EditModeVariable.tex;
+BridgeTask_Features.tex;
+BridgeTask_Intro.tex;
+BridgeTask_Portfolio.tex;
+BridgeTask_SetupResource.tex;
+BridgeTask_Slot.tex;
+BridgeTask_XMLFinishing.tex;
+BridgeTask_XMLHeader.tex;
+BridgeTask_XMLQuestions.tex;
+BridgeTask_XML.tex;
+BridgeTask_XMLVariable.tex;
+Browsing_Resources.tex;
+Bugzilla.tex;
+Caching.tex;
+Calendar_Add_Announcement.tex;
+Calendar_Remove_Announcement.tex;
+Calling_Functions.tex;
+CAPA_LON-CAPA_function_diffs.tex;
+Cascading_Parameters.tex;
+Catalog_Info.tex;
+Change_Colors.tex;
+Change_Password.tex;
+Chart_Description.tex;
+Change_Discussion_Display.tex;
+Chart_Enrollment_Status.tex;
+Chart_Output_Data.tex;
+Chart_Output_Formats.tex;
+Chart_Sections.tex;
+Chart_Sequences.tex;
+Chart_Student_Data.tex;
+Chatting.tex;
+Clicker_Registration.tex;
+Coauthor.tex;
+Construction_Space_Overview.tex;
+Content_Page_Overview.tex;
+Contextual_Help.tex;
+Course_Add_Other.tex;
+Course_Add_Student.tex;
+Course_Automated_Enrollment.tex;
+Course_Broadcast_Message.tex;
+Course_Change_Privileges.tex;
+Course_Chart_To_Excel.tex;
+Course_Chat.tex;
+Course_Convert_To_CSV.tex;
+Course_Coordination_Intro.tex;
+Course_Create_Class_List.tex;
+Course_Critical_Message.tex;
+Course_Prefs_Settings.tex;
+Course_Deleting.tex;
+Course_Disable_Discussion.tex;
+Course_Discussion_Board.tex;
+Course_Drop_Student.tex;
+Course_Edit_Content.tex;
+Course_Editing_Custom_Roles.tex;
+Course_Environment.tex;
+Course_Extending_Due_Dates.tex;
+Course_Face_To_Face_Records.tex;
+Course_Feedback_Addresses.tex;
+Course_Homework_Performance_Overview.tex;
+Course_Manually_Grade_Problem.tex;
+Course_Manual_Title_Page.tex;
+Course_Manage_Group.tex;
+Course_Maximum_Collaborators.tex;
+Course_Message_Access.tex;
+Course_Modify_Student_Data.tex;
+Course_Parameter_Levels.tex;
+Course_Parameter_Table_Mode.tex;
+Course_Prefs_Bridgetasks.tex;
+Course_Prefs_Display.tex;
+Course_Prefs_Grading.tex;
+Course_Prefs_Printouts.tex;
+Course_Prefs_Classlists.tex;
+Course_Prefs_Feedback.tex;
+Course_Prefs_Language.tex;
+Course_Prefs_Spreadsheet.tex;
+Course_Prefs_Discussions.tex;
+Course_Prefs_General.tex;
+Course_Prefs_Other.tex;
+Course_Problem_Weight.tex;
+Course_Requests.tex;
+Course_Request_Access_End.tex;
+Course_Request_Access_Start.tex;
+Course_Request_Autoadd.tex;
+Course_Request_Autodrop.tex;
+Course_Request_Category.tex;
+Course_Request_Clone.tex;
+Course_Request_Crosslist.tex;
+Course_Request_Description.tex;
+Course_Request_Enroll_End.tex;
+Course_Request_Enroll_Start.tex;
+Course_Request_LCSection.tex;
+Course_Request_Personnel.tex;
+Course_Request_RegAccess_End.tex;
+Course_Request_RegAccess_Start.tex;
+Course_Request_Rolesection.tex;
+Course_Request_Sections.tex;
+Course_Roles.tex;
+Course_Self_Enrollment.tex;
+Course_Set_Start_End_Date.tex;
+Course_Setting_Parameters.tex;
+Course_Student_Grade_Override.tex;
+Course_Student_Work.tex;
+Course_Toplevel_Seq.tex;
+Course_User_Evaluation.tex;
+Course_User_Parameter.tex;
+Course_View_Class_List.tex;
+Create_Course.tex;
+Creating_A_Course_Intro.tex;
+Creating_Content_Overview.tex;
+Creating_Domain_Coordinators.tex;
+Creating_Formula_Response.tex;
+Creating_Groups.tex;
+Creating_New_Content_Pages.tex;
+Creating_Online_Problems.tex;
+Creating_Math_Response_Problems.tex;
+Creating_Radio_Response_Problems.tex;
+Custom_Response_Problem_Creation.tex;
+Custom_Response_Problems.tex;
+Deleting_Domain_Coordinators.tex;
+Developer_Manual_Title_Page.tex;
+Developer_Tutorial.tex;
+Distribute_Messages.tex;
+Docs_About_Bulletin_Board.tex;
+Docs_About_Group_Files.tex; 
+Docs_About_My_Personal_Info.tex;
+Docs_About_Simple_Page.tex;
+Docs_About_Syllabus.tex;
+Docs_Adding_Course_Doc.tex;
+Docs_Adding_External_Resource.tex;
+Docs_Adding_Folders.tex;
+Docs_Adding_Pages.tex;
+Docs_Adding_Syllabus.tex;
+Docs_Alternatives.tex;
+Docs_Check_Resource_Versions.tex;
+Docs_Creating_From_Template.tex;
+Docs_Dropbox.tex;
+Docs_Dump_Course_Docs.tex;
+Docs_Export_Course_Docs.tex;
+Docs_Editing_Templated_Pages.tex;
+Docs_Essay.tex;
+Docs_Import_Stored_Link.tex;
+Docs_Importing_IMS_Course.tex;
+Docs_Importing_LON-CAPA_Resource.tex;
+Docs_Load_Map.tex;
+Docs_Main_Course_Documents.tex;
+Docs_Navigate_Content.tex;
+Docs_Option_Response.tex;
+Docs_Overview.tex;
+Docs_Radio.tex;
+Docs_Score_Upload_Form.tex;
+Docs_Search.tex;
+Docs_Simple_Problem.tex;
+Docs_String_Response.tex;
+Docs_Supplemental.tex;
+Docs_Uploading_From_Harddrive.tex;
+Docs_Verify_Content.tex;
+Docs_Web_Page.tex;
+Domain_Configuration_Auto_Creation.tex;
+Domain_Configuration_Auto_Enrollment.tex;
+Domain_Configuration_Auto_Updates.tex;
+Domain_Configuration_Cataloging_Courses.tex;
+Domain_Configuration_Color_Schemes.tex;
+Domain_Configuration_Contact_Info.tex;
+Domain_Configuration_Course_Defaults.tex;
+Domain_Configuration_InstDirectory_Search.tex;
+Domain_Configuration_LangTZAuth.tex;
+Domain_Configuration_Login_Page.tex;
+Domain_Configuration_Quotas.tex;
+Domain_Configuration_Request_Courses.tex;
+Domain_Configuration_Scantron_Format.tex;
+Domain_Configuration_Server_Status.tex;
+Domain_Configuration_SSL.tex;
+Domain_Configuration_User_Creation.tex;
+Domain_Configuration_User_Modification.tex;
+Domain_Configuration_User_Sessions.tex;
+Domain_Coordination_Intro.tex;
+Domain_Coordination_Overview.tex;
+Domain_Crontab_Entries.tex;
+Domain_Manual_Title_Page.tex;
+Due_Date.tex;
+Dynamic_Plot_Overview.tex;
+Edit_Syllabus.tex;
+Error.tex;
+exam_answers.tex;
+exam_basics.tex;
+exam_build.tex;
+exam_disable_com.tex;
+exam_how_scored.tex;
+exam_parameters.tex;
+exam_printing.tex;
+exam_question_type.tex;
+exam_scoring.tex;
+Exploring_Your_Course.tex;
+Feedback_Author.tex;
+Feedback_Content.tex;
+Feedback_Discuss_Anon.tex;
+Feedback_Discussion.tex;
+Feedback_Policy.tex;
+Finding_Resources.tex;
+Foils.tex;
+Formula_Answers.tex;
+Formula_Editor.tex;
+Formula_Response_Adv_Intro.tex;
+Formula_Response_Example.tex;
+Formula_Response_Limitations.tex;
+Formula_Response_Problems.tex;
+Formula_Response_Sampling.tex;
+Formula_Tolerance.tex;
+Function_Plot_Response_Overview.tex;
+Function_Plot_Response_Background_Plot.tex;
+Function_Plot_Response_Evaluation_Rule.tex;
+Function_Plot_Response_Rule_Set.tex;
+Function_Plot_Response_Elements.tex;
+Function_Plot_Response_Question.tex;
+Function_Plot_Response_Spline.tex;
+Function_Plot_Response_Custom_Rule.tex;
+Function_Plot_Response_Object.tex;
+Function_Plot_Response_Vector.tex;
+Function_Plot_Response_Vector_Rule.tex;
+Function_Plot_Response_Vector_Sum_Rule.tex;
+General_Intro.tex;
+Generation.tex;
+Grade_All.tex;
+Grade_Intro.tex;
+Grade_One.tex;
+Grade_Scantron.tex;
+Grade_Sequence.tex;
+Grade_Upload.tex;
+Grade_Verify.tex;
+GradingOptions.tex;
+Greek_Symbols.tex;
+Guts_Apache_Env.tex;
+Guts_Apache_Modules.tex;
+Guts_Apache.tex;
+Guts_Authentication.tex;
+Guts_Authoring.tex;
+Guts_Coding_Guidelines.tex;
+Guts_Course_Dir.tex;
+Guts_User_Dir.tex;
+Help.tex;
+Helper_Course_Initialization.tex;
+How_To_Edit_Existing_Content_Pages.tex;
+Institutional_Integration_Authentication.tex;
+Institutional_Integration_Course_Codes.tex;
+Institutional_Integration_Course_Requests.tex;
+Institutional_Integration_Format_Checks.tex;
+Institutional_Integration_Identity_Management.tex;
+Institutional_Integration_User_Categories.tex;
+Latex_Footer.tex;
+Latex_Header.tex;
+Leaving_Feedback.tex;
+Login_To_LON-CAPA.tex;
+Math_Response_Problems.tex;
+Maxima_Argument_Array.tex;
+Maxima_Libraries.tex;
+Metadata_Description.tex;
+Modify_Community_Owner.tex;
+Modify_Course_Defaultauth.tex;
+Modify_Course_Instcode.tex;
+Modify_Course_Owner.tex;
+Modify_Course_Quota.tex;
+Navigation_Screen.tex;
+Navmap_Host_Down.tex;
+NavMaps_MarkPosts_Read.tex;
+Numerical_Response_Advanced_Example.tex;
+Numerical_Response_Format.tex;
+Numerical_Response_Introduction.tex;
+Numerical_Response_Intro.tex;
+Numerical_Response_Parts_A.tex;
+Numerical_Response_Parts_B.tex;
+Numerical_Response_Problems.tex;
+Numerical_Response_Randomization.tex;
+Numerical_Response_Simple_Example.tex;
+Numerical_Response_Tutorial_A.tex;
+Numerical_Response_Units.tex;
+numerical_wrong_answers.tex;
+Open_Date.tex;
+Option_Response_Concept_Group_Example.tex;
+Option_Response_Matching_Example.tex;
+Option_Response_Problem_Creation.tex;
+Option_Response_Problem_Figure.tex;
+Option_Response_Problem_Parts.tex;
+Option_Response_Problems.tex;
+Option_Response_Simple.tex;
+Other_Symbols.tex;
+Parameter_encrypturl.tex;
+Parameter_Helper.tex;
+Parameter_Manager.tex;
+Parameter_Overview.tex;
+Parameter_Set_Folder.tex;
+Part_Tag_Edit_Help.tex;
+Personal_Info_Page.tex;
+Physical_Units.tex;
+Portfolio_About.tex;
+Portfolio_AddFiles.tex;
+Portfolio_Catalog.tex;
+Portfolio_ChangeDirectory.tex;
+Portfolio_CreateDirectory.tex;
+Portfolio_DeleteFile.tex;
+Portfolio_FileAction.tex;
+Portfolio_FileList.tex;
+Portfolio_OpenFile.tex;
+Portfolio_RenameFile.tex;
+Portfolio_ShareFile_ChangeSetting.tex;
+Portfolio_ShareFile_Conditional.tex;
+Portfolio_ShareFile_SetAccess.tex;
+Portfolio_ShareFile_StopAccess.tex;
+Portfolio_ShareFile.tex;
+Prefs_About_Me.tex;
+Prefs_Forwarding.tex;
+Prefs_Language.tex;
+Prefs_Messages.tex;
+Prefs_Notification.tex;
+Prefs_Screen_Name_Nickname.tex;
+Print_Library.tex;
+Print_Options.tex;
+Print_Resource.tex;
+Print_Tricks.tex;
+Problem_Editor_Testing_Area.tex;
+Problem_Editor_XML_Index.tex;
+Problem_LON-CAPA_Functions.tex;
+Problem_LON-CAPA_Image_Options.tex;
+Problem_Parameters.tex;
+Problem_Types.tex;
+Publishing_A_Resource.tex;
+Publishing_Author_Tutorial_Segue.tex;
+Publishing_Copyright.tex;
+Publishing_Intro.tex;
+Publishing_Keywords.tex;
+Quick_Grades_Description.tex;
+Quick_Grades_Possibly_Correct.tex;
+Radio_Response_Problems.tex;
+Radio_Response_Randomization.tex;
+Ranking_Problems.tex;
+Receipt.tex;
+Remote_Menu.tex;
+Resource_Discussion.tex;
+Resource_Types.tex;
+Roles_About.tex;
+Roles_Screen.tex;
+Script_Functions.tex;
+Scripting_Help.tex;
+Script_Tutorial_Intro.tex;
+Script_Variables.tex;
+Search_Advanced.tex;
+Search_Basic.tex;
+Searching.tex;
+Sending_Email.tex;
+Sequence_Advanced_Editor_Creation.tex;
+Sequence_Definition.tex;
+Sequence_Editor_Selection.tex;
+Sequence_Page_Maps.tex;
+Sequence_Simple_Editor_Creation.tex;
+Sequence_Top-Level.tex;
+Significant_Figures.tex;
+Slot_About.tex;
+Slot_AddInterface.tex;
+Slot_ChoosingResources.tex;
+Slot_CommaDelimited.tex;
+Slot_EditDelete.tex;
+Slot_OptionalAttributes.tex;
+Slot_RequiredAttributes.tex;
+Slot_ResourceParameter.tex;
+Slot_RestrictAvailibility.tex;
+Slot_SelectingField.tex;
+Slot_SpecifyProctors.tex;
+Some_Items_Were_Not_Submitted.tex;
+Spreadsheet_About.tex;
+Spreadsheet_Calculation.tex;
+Spreadsheet_Calculation_Time.tex;
+Spreadsheet_Cell_Editing.tex;
+Spreadsheet_Editing.tex;
+Spreadsheet_Export_Row.tex;
+Spreadsheet_Files.tex;
+Spreadsheet_Functions.tex;
+Spreadsheet_Hierarchy.tex;
+Spreadsheet_HowTo_Assessments.tex;
+Spreadsheet_HowTo.tex;
+Spreadsheet_Layout.tex;
+Spreadsheet_Levels.tex;
+Spreadsheet_Max_Depth_Exceeded.tex;
+Spreadsheet_Parms.tex;
+Spreadsheet_Problem_Weight.tex;
+Spreadsheet_Referencing_Cells.tex;
+Spreadsheet_Referencing_Parameters.tex;
+Spreadsheet_Row_Numbers.tex;
+Spreadsheet_Student_View.tex;
+Spreadsheet_Student_Visible.tex;
+Spreadsheet_Template_Row.tex;
+Spreadsheet_Ternary_Operator.tex;
+Spreadsheet_Tries.tex;
+Statistics_Overall_Key.tex;
+Statistics_Sequence.tex;
+Statistics_Cache.tex;
+String_Response_Problem_Creation.tex;
+String_Response_Problems.tex;
+Student_Intro.tex;
+Submission_Time_Analysis.tex;
+Syllabus_ExtLink.tex;
+Syllabus_URLs.tex;
+Table_Mode.tex;
+Testbank_Formatting.tex;
+TEXDropEmptyColumns_attribute.tex;
+TEXitemgroupwidth_attribute.tex;
+TEXitemgroup_attribute.tex;
+TEXlayout_attribute.tex;
+TEXsize_attribute.tex;
+TEXtype_attribute.tex;
+TEXwidth_attribute.tex;
+Tries.tex;
+Tolerance.tex;
+Uploaded_Templates_PublicView.tex;
+Uploaded_Templates_TextBoxes.tex;
+Uploading_File_Options.tex;
+Using_Clickers.tex;
+Variable_Naming_Conventions.tex;
+Variables_in_Scripts.tex;
+Variables_in_the_Answer_Block.tex;
+Variables_in_the_Text_Block.tex;
+Variable_Tutorial_A.tex;
+View_All_Messages.tex;
+View_Critical_Messages.tex;
+View_recent_activity.tex;
+What_Is_LON-CAPA.tex;
+Why_LON-CAPA.tex;
+Wishlist.tex;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/tex/de/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/tex/de/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+German Tex files for the help system
+</description>
+<filenames>
+About_Bombs.tex;
+About_Communication.tex;
+Auth_Options.tex;
+Authoring_Math_Editor.tex;
+Contextual_Help.tex;
+Cascading_Parameters.tex;
+Change_Colors.tex;
+Change_Discussion_Display.tex;
+Change_Password.tex;
+Course_Convert_To_CSV.tex;
+Course_Create_Class_List.tex;
+Course_Self_Enrollment.tex;
+Docs_About_Bulletin_Board.tex;
+Docs_About_Group_Files.tex;
+Docs_About_My_Personal_Info.tex;
+Docs_About_Simple_Page.tex;
+Docs_About_Syllabus.tex;
+Docs_Adding_Course_Doc.tex;
+Docs_Adding_Folders.tex;
+Docs_Editing_Templated_Pages.tex;
+Docs_Navigate_Content.tex;
+Docs_Score_Upload_Form.tex;
+Docs_Verify_Content.tex;
+Formula_Editor.tex;
+General_Intro.tex;
+Generation.tex;
+Metadata_Description.tex;
+Navigation_Screen.tex;
+Parameter_Overview.tex;
+Portfolio_About.tex;
+Portfolio_AddFiles.tex;
+Portfolio_Catalog.tex;
+Portfolio_ChangeDirectory.tex;
+Portfolio_CreateDirectory.tex;
+Portfolio_DeleteFile.tex;
+Portfolio_FileAction.tex;
+Portfolio_FileList.tex;
+Portfolio_OpenFile.tex;
+Portfolio_RenameFile.tex;
+Portfolio_ShareFile.tex;
+Portfolio_ShareFile_ChangeSetting.tex;
+Portfolio_ShareFile_Conditional.tex;
+Portfolio_ShareFile_SetAccess.tex;
+Portfolio_ShareFile_StopAccess.tex;
+Prefs_About_Me.tex;
+Prefs_Language.tex;
+Prefs_Messages.tex;
+Prefs_Screen_Name_Nickname.tex;
+Problem_Parameters.tex;
+Publishing_Copyright.tex;
+Publishing_Keywords.tex;
+Quick_Grades_Possibly_Correct.tex;
+Ranking_Problems.tex;
+Receipt.tex;
+Search_Advanced.tex;
+Search_Basic.tex;
+Student_Intro.tex;
+Syllabus_ExtLink.tex;
+Table_Mode.tex;
+Tries.tex;
+Uploaded_Templates_PublicView.tex;
+Uploaded_Templates_TextBoxes.tex;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.*</glob>
+<sourcedir>loncom/html/adm/help/tex/ru/</sourcedir>
+<targetdir dist='default'>
+home/httpd/html/adm/help/tex/ru/</targetdir>
+<categoryname>interface file</categoryname>
+<description>
+Russian Tex files for the help system
+</description>
+<filenames>
+About_Authors_Manual.tex;
+About_Communication.tex;
+About_Developers_Manual.tex;
+About_Numerical_and_Formula_Response.tex;
+CAPA_LON-CAPA_function_diffs.tex;
+Course_Maximum_Collaborators.tex;
+Course_Set_Start_End_Date.tex;
+Creating_A_Course_Intro.tex;
+Other_Symbols.tex;
+Physical_Units.tex;
+Print_Resource.tex;
+Authoring_Adding_Pictures.tex;
+</filenames>
+</fileglob>
+<file>
+<source>loncom/html/adm/help/fragmentLabels.gdbm</source>
+<target dist='default'>home/httpd/html/adm/help/fragmentLabels.gdbm</target>
+<categoryname>interface file</categoryname>
+<description>
+A gdbm file containing a label->tex file hash.
+</description>
+<status>works/unverified</status>
+<build trigger='always run'>
+loncom/build/rebuild_label_hash.sh
+</build>
+<dependencies>
+rebuild_label_hash.sh
+</dependencies>
+</file>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/fonts/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/fonts/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    Fonts for convertjme.pl
+  </description>
+  <filenames>
+DejaVuSerif-Roman.ttf;
+DejaVuSansMono-Bold.ttf;
+DejaVuSans.pfb;
+DejaVuSans.ttf;
+DejaVuSerif.pfb;
+DejaVuSerif.ttf;
+status.txt;
+unicover.txt;
+  </filenames>
+</fileglob>
+<file>
+<source>loncom/html/adm/fonts/AUTHORS</source>
+<target dist='default'>home/httpd/html/adm/fonts/AUTHORS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/fonts/BUGS</source>
+<target dist='default'>home/httpd/html/adm/fonts/BUGS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/LICENSE</source>
+<target dist='default'>home/httpd/html/adm/fonts/LICENSE</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/NEWS</source>
+<target dist='default'>home/httpd/html/adm/fonts/NEWS</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
+<source>loncom/html/adm/fonts/README</source>
+<target dist='default'>home/httpd/html/adm/fonts/README</target>
+<categoryname>interface file</categoryname>
+<description>
+Documentation for fonts
+</description>
+</file>
+<file>
 <source>loncom/interface/lonstatistics.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonstatistics.pm</target>
 <categoryname>handler</categoryname>
@@ -1211,6 +3801,120 @@ Handler to show statistics on solving LO
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/statistics/lonstathelpers.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstathelpers.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utility module for statistics and data mining.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lontrackstudent.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontrackstudent.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to parse and analyze activity.log
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonproblemstatistics.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonproblemstatistics.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the Problem Statistics web pages.
+</description>
+</file>
+<file>
+<source>loncom/interface/statistics/lonsurveyreports.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsurveyreports.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+Gives instructors access to compiled survey results.
+</description>
+</file>
+<file>
+<source>loncom/interface/statistics/lonstudentsubmissions.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstudentsubmissions.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+Generates excel file containing student submissions and correct answers.
+</description>
+</file>
+<file>
+<source>loncom/interface/statistics/loncorrectproblemplot.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncorrectproblemplot.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the correct problems plot web pages.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonpercentage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonpercentage.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the Percentage graph web pages.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonproblemanalysis.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonproblemanalysis.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+This module provides detailed analysis and raw data for submissions of various problem types.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/interface/statistics/longradinganalysis.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/longradinganalysis.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    This module provides detailed analysis and raw data for submissions of various problem types.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonsubmissiontimeanalysis.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsubmissiontimeanalysis.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+This module produces plots of the times of students attempts on an assessment.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/statistics/lonstudentassessment.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstudentassessment.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+The module that generate the html for the Student Assessment/Chart web pages.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonwhatsnew.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwhatsnew.pm
+</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to display items in course requiring action.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/londiff.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/londiff.pm</target>
 <categoryname>handler</categoryname>
@@ -1220,6 +3924,15 @@ Handler to show difference between two f
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/publisher/lonrights.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrights.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to show and edit custom distribution rights
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/lonupload.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonupload.pm</target>
 <categoryname>handler</categoryname>
@@ -1243,14 +3956,15 @@ loncom/build/pod2man.sh ../publisher/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonupload.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonupload.html
+<source>doc/lib/perl/Apache/lonupload.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonupload.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonupload.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../publisher/lonupload.pm &gt; \
-../../doc/api/Apache/lonupload.html &amp;&amp; echo 'pod2html lonupload.pm'
+../../doc/lib/perl/Apache/lonupload.html &amp;&amp; \
+echo 'pod2html lonupload.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1280,11 +3994,21 @@ Handler to evaluate externally graded re
 <target dist='default'>home/httpd/lib/perl/Apache/loncapagrade.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Handler to evaluate externally graded responses.
+Holds results and defines
+tag handlers needed by externalresponse.pm
 </description>
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/gradesubmission.pl</source>
+  <target dist='default'>home/httpd/cgi-bin/gradesubmission.pl</target>
+  <categoryname>handler</categoryname>
+  <description>
+Example script for use with external response.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/publisher/lonpubdir.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpubdir.pm</target>
 <categoryname>handler</categoryname>
@@ -1293,6 +4017,14 @@ Handler to publish directories.
 </description>
 </file>
 <file>
+<source>loncom/publisher/lonunauthorized.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonunauthorized.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to explain failed contruction space access.
+</description>
+</file>
+<file>
 <source>doc/man/Apache__lonpubdir.3</source>
 <target dist='default'>usr/man/man3/Apache::lonpubdir.3</target>
 <categoryname>doc</categoryname>
@@ -1307,14 +4039,15 @@ loncom/build/pod2man.sh ../publisher/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonpubdir.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonpubdir.html
+<source>doc/lib/perl/Apache/lonpubdir.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonpubdir.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonpubdir.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../publisher/lonpubdir.pm &gt; \
-../../doc/api/Apache/lonpubdir.html &amp;&amp; echo 'pod2html lonpubdir.pm'
+../../doc/lib/perl/Apache/lonpubdir.html &amp;&amp; \
+echo 'pod2html lonpubdir.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1331,6 +4064,15 @@ Handler to retrieve old versions from re
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/publisher/loncleanup.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncleanup.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to clean up HTML files.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonretrieve.3</source>
 <target dist='default'>usr/man/man3/Apache::lonretrieve.3</target>
 <categoryname>doc</categoryname>
@@ -1345,14 +4087,16 @@ loncom/build/pod2man.sh ../publisher/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonretrieve.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonretrieve.html
+<source>doc/lib/perl/Apache/lonretrieve.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonretrieve.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonretrieve.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../publisher/lonretrieve.pm &gt; \
-../../doc/api/Apache/lonretrieve.html &amp;&amp; echo 'pod2html lonretrieve.pm'
+../../doc/lib/perl/Apache/lonretrieve.html &amp;&amp; \
+echo 'pod2html lonretrieve.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1382,12 +4126,14 @@ echo 'manifying edit.pm'
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/edit.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/edit.html</target>
+<source>doc/lib/perl/Apache/edit.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/edit.html
+</target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for edit.pm</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh ../homework/edit.pm &gt; ../../doc/api/Apache/edit.html \
+loncom/build/pod2html.sh ../homework/edit.pm &gt; \
+../../doc/lib/perl/Apache/edit.html \
 &amp;&amp; echo 'pod2html edit.pm'
 </build>
 <status>works/unverified</status>
@@ -1440,6 +4186,33 @@ coordinators.
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/lonclonecourse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonclonecourse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Internal routines for creating a clone of an existing course.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonrequestcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonrequestcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows submission of course requests by users with the right to request them 
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/loncoursequeueadmin.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursequeueadmin.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Common routines for administration of queues containing user-submitted requests - either for self-enrollment in an existing course, or for creation of a new course.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/loncreateuser.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncreateuser.pm</target>
 <categoryname>handler</categoryname>
@@ -1450,11 +4223,100 @@ them roles.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonchart.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonchart.pm</target>
+<source>loncom/interface/lonuserutils.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonuserutils.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Common routines for user management including upload of lists of users in different formats, and to automatically create users (if they do not exist already), assign them roles within the privileges of the uploader to create/edit users. Also the ability to generate filtered lists of users with specific roles, as determined by the privileges of the viewer.   
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/selfenroll.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/selfenroll.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Users with accounts in LON-CAPA can self-enroll in courses between specified start and end dates, if the course has been configured to allow it, and the user's domain/institutional type satisfy the settings for self-enrollment in the course.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonhtmlcommon.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhtmlcommon.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains a set of functions that generate html controls and data layouts
+</description>
+</file>
+<file>
+<source>loncom/interface/lonhtmlgateway.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhtmlgateway.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains a set of functions to properly parse and handle HTML input and output
+</description>
+</file>
+<file>
+<source>loncom/interface/lonspeller.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonspeller.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains a set of functions to use Aspell
+</description>
+</file>
+<file>
+<source>loncom/localize/lonlocal.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonlocal.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Contains the &mt access function to Locale::Maketext
+</description>
+</file>
+<file>
+  <source>loncom/localize/lonlocalize.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonlocalize.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+handler for &mt()ing static files
+  </description>
+</file>
+<file>
+<source>loncom/localize/localize.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/localize.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Localization class for Locale::Maketext
+</description>
+</file>
+<fileglob>
+<glob>*.pm</glob>
+<sourcedir>loncom/localize/localize/</sourcedir>
+<targetdir dist='default'>
+home/httpd/lib/perl/Apache/localize/</targetdir>
+<categoryname>lexicon file</categoryname>
+<description>
+Translation files.
+</description>
+<filenames>
+de.pm;
+pt.pm;
+fr.pm;
+ja.pm;
+tr.pm;
+ru.pm;
+fa.pm;
+ar.pm;
+es.pm;
+x_chef.pm;
+zh.pm;
+</filenames>
+</fileglob>
+<file>
+<source>loncom/interface/loncoursedata.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursedata.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Produces simple LectureOnline-like student assessment performance chart
+Common functions for handling student course data (download and process)
 </description>
 </file>
 <file>
@@ -1482,14 +4344,15 @@ loncom/build/pod2man.sh ../interface/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/loncommon.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/loncommon.html
+<source>doc/lib/perl/Apache/loncommon.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/loncommon.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for loncommon.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../interface/loncommon.pm &gt; \
-../../doc/api/Apache/loncommon.html &amp;&amp; echo 'pod2html loncommon.pm'
+../../doc/lib/perl/Apache/loncommon.html &amp;&amp; \
+echo 'pod2html loncommon.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1519,6 +4382,13 @@ Coordinates the response to clicking an
 Handles tags associated with showing a list of options.</description>
 </file>
 <file>
+<source>loncom/homework/functionplotresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/functionplotresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handles tags associated with function plots using GeoGebra.</description>
+</file>
+<file>
 <source>loncom/homework/outputtags.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/outputtags.pm</target>
 <categoryname>handler</categoryname>
@@ -1528,6 +4398,657 @@ assignment.
 </description>
 <status>works/unverified</status>
 </file>
+
+<file>
+  <source>loncom/homework/chemresponse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/chemresponse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handle the tags organicresponse/structure and reationresponse
+  </description>
+  <status>works/unverified</status>
+</file>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jme/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jme/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JME files, for editing organic structures
+  </description>
+  <filenames>
+JME.jar;
+jme.gif;
+jme_help.html;
+nitro.gif;
+smiles.gif
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/geogebra/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/geogebra/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    Geogebra, for functionplotresponse
+  </description>
+  <filenames>
+geogebra_algos.jar;
+geogebra_algos.jar.pack.gz;
+geogebra_javascript.jar;
+geogebra_javascript.jar.pack.gz;
+geogebra_cas.jar;
+geogebra_export.jar.pack.gz;
+geogebra.jar;
+geogebra_main.jar.pack.gz;
+geogebra_cas.jar.pack.gz;
+geogebra_gui.jar;
+geogebra.jar.pack.gz;
+geogebra_properties.jar;
+geogebra_export.jar;
+geogebra_gui.jar.pack.gz;
+geogebra_main.jar;
+geogebra_properties.jar.pack.gz;
+geogebra_usb.jar;
+geogebra_usb.jar.pack.gz;
+jlatexmath.jar;
+jlatexmath.jar.pack.gz;
+jlm_cyrillic.jar;
+jlm_cyrillic.jar.pack.gz;
+jlm_greek.jar;
+jlm_greek.jar.pack.gz;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jmol/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jmol/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    Jmol files, for displaying structures
+  </description>
+  <filenames>
+COPYRIGHT.txt;
+JmolApplet.jar;
+Jmol.js;
+LICENSE.txt;
+README.txt;
+JmolApplet0_Core.jar;
+JmolApplet0_i18n.jar;
+JmolApplet0.jar;
+JmolApplet0_Jars.jar;
+JmolApplet0_Jvxl.jar;
+JmolApplet0_Main.jar;
+JmolApplet0_Popup.jar;
+JmolApplet0_Quantum.jar;
+JmolApplet0_ReadersCifPdb.jar;
+JmolApplet0_ReadersMolXyz.jar;
+JmolApplet0_ReadersMore.jar;
+JmolApplet0_ReadersXml.jar;
+JmolApplet0_ShapeBio.jar;
+JmolApplet0_ShapeSpecial.jar;
+JmolApplet0_Smiles.jar;
+JmolApplet0_Viewer.jar;
+  </filenames>
+</fileglob>
+
+<file>
+  <source>loncom/homework/convertjme.pl</source>
+  <target dist='default'>home/httpd/cgi-bin/convertjme.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Dynamically converts JME strings into either a png or ps file.
+  </description>
+</file>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+Latex.html;
+MathML.html;
+Maxima.html;
+MaximaPopup.html;
+EditMathPopup.html;
+FCKEditMathPopup.html
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/classes/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+AbsoluteLayout.jar;
+jep.jar;
+Project.jar;
+Config.xml;
+jdom.jar;
+swing-layout-1.0.jar;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/HotEqn/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/HotEqn/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+HotEqn.class;
+HotEqn.jar;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/classes/Display/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/Display/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+MainApplet.class;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/classes/formats/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/formats/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+ASCIIMathML.xml;
+Latex.xml;
+MathML.xml;
+MoodleTex.xml;
+Maple.xml;
+Maxima.xml;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/dragmath/applet/classes/lang/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/dragmath/applet/classes/lang/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Dragmath is a Java-based formula editor
+  </description>
+  <filenames>
+ca.xml;
+cz.xml;
+en.xml;
+fr.xml;
+no.xml;
+pt-br.xml;
+sv.xml;
+de.xml;
+es.xml;
+nl.xml;
+pl.xml;
+ru.xml;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jsMath/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jsMath is a Javascript solution to converting TeX to something the browser can see
+  </description>
+  <filenames>
+black.gif;
+blank.gif;
+COPYING.txt;
+FONTSVERSION;
+jsMath-BaKoMa-fonts.js;
+jsMath-autoload.html;
+jsMath-controls.html;
+jsMath-fallback-mac.js;
+jsMath-fallback-mac-mozilla.js;
+jsMath-fallback-mac-msie.js;
+jsMath-fallback-pc.js;
+jsMath-fallback-symbols.js;
+jsMath-fallback-unix.js;
+jsMath-global-controls.html;
+jsMath-global.html;
+jsMath.js;
+jsMath-loader.html;
+jsMath-loader-omniweb4.js;
+jsMath-mozilla.js;
+jsMath-msie-mac.js;
+jsMath-old-browsers.js;
+  </filenames>
+</fileglob>
+
+<file>
+  <source>loncom/html/adm/jsMath/jsMath-fonts-1.3.zip</source>
+  <target dist='default'>home/httpd/html/adm/jsMath/fonts/</target>
+  <categoryname>script</categoryname>
+  <description>
+    Server side png fonts for use by jsMath
+  </description>
+  <installscript>
+commands
+  </installscript>
+  <dependencies>
+loncom/html/adm/jsMath/commands;
+loncom/html/adm/jsMath/jsMath-fonts-1.3.zip;
+  </dependencies>
+</file>
+
+<file>
+  <source>loncom/html/adm/MathJax/mathjax-MathJax-v2.1-241378e.zip</source>
+  <target dist='default'>home/httpd/html/adm/MathJax</target>
+  <categoryname>script</categoryname>
+  <description>
+   MathJax for processing Tex, scripted installation that unzips installation file
+   in the appropriate location
+   NOTE: the commands file `mv`'s the files out of the original location provided
+   unzipping the file, making it look cleaner in the /home/.../adm/ directory
+  </description>
+  <installscript>
+commands
+  </installscript>
+  <dependencies>
+loncom/html/adm/MathJax/commands;
+loncom/html/adm/MathJax/VERSION;
+loncom/html/adm/MathJax/mathjax-MathJax-v2.1-241378e.zip;
+  </dependencies>
+</file>
+
+<file>
+  <source>loncom/html/adm/geogebra/geogebra_html5.tar.gz</source>
+  <target dist='default'>home/httpd/html/adm/geogebra/web</target>
+  <categoryname>script</categoryname>
+  <description>
+   HTML5/JavaScript Version of GeoGebra
+  </description>
+  <installscript>
+commands
+  </installscript>
+  <dependencies>
+loncom/html/adm/geogebra/commands;
+loncom/html/adm/geogebra/VERSION;
+loncom/html/adm/geogebra/geogebra_html5.tar.gz;
+  </dependencies>
+</file>
+
+<file>
+  <source>loncom/html/adm/ckeditor/ckeditor_3.6.6.1.tar.gz</source>
+  <target dist='default'>home/httpd/html/ckeditor</target>
+  <categoryname>script</categoryname>
+  <description>
+   GUI HTML Editor, scripted installation decompress the tarball and
+   installs the loncapa config.js file
+  </description>
+  <installscript>
+commands
+  </installscript>
+  <dependencies>
+loncom/html/adm/ckeditor/commands;
+loncom/html/adm/ckeditor/ckeditor_3.6.6.1.tar.gz;
+loncom/html/adm/ckeditor/loncapaconfig.js;
+loncom/html/adm/ckeditor/VERSION;
+  </dependencies>
+</file>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jsMath/extensions/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/extensions/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+Additional jsMath functionality that can be used when needed.
+  </description>
+  <filenames>
+AMSmath.js;
+AMSsymbols.js;
+HTML.js;
+bbox.js;
+font.js;
+boldsymbol.js;
+double-click.js;
+fbox.js;
+leaders.js;
+mathchoice.js;
+mimeTeX.js;
+moreArrows.js;
+newcommand.js;
+underset-overset.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jsMath/plugins/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/plugins/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jsMath is a Javascript solution to converting TeX to something the browser can see
+  </description>
+  <filenames>
+autoload.js;
+CHMmode.js;
+global.js;
+mimeTeX.js;
+noCache.js;
+noGlobal.js;
+noImageFonts.js;
+smallFonts.js;
+spriteImageFonts.js;
+tex2math.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jsMath/uncompressed/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jsMath/uncompressed/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+the jsMath source files not compressed for increasing download speed (not used by lon-capa directly)
+  </description>
+  <filenames>
+def.js;
+font.js;
+jsMath-fallback-mac.js;
+jsMath-fallback-pc.js;
+jsMath-fallback-symbols.js;
+jsMath-fallback-unix.js;
+jsMath.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.js</glob>
+  <sourcedir>loncom/html/adm/jpicker/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jpicker/js/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+JQuery colorpicker javascript library
+  </description>
+  <filenames>
+    jpicker-1.1.6.min.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.css</glob>
+  <sourcedir>loncom/html/adm/jpicker/css/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jpicker/css/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+JQuery colorpicker javascript library css files
+  </description>
+  <filenames>
+    jPicker-1.1.6.min.css;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jpicker/images/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jpicker/images/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+JQuery color picker javascript library image files
+  </description>
+  <filenames>
+    AlphaBar.png;
+    bar-opacity.png;
+    Bars.png;
+    map-opacity.png;
+    mappoint.gif;
+    Maps.png;
+    NoColor.png;
+    picker.gif;
+    preview-opacity.png;
+    rangearrows.gif;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.js</glob>
+  <sourcedir>loncom/html/adm/countdown/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/countdown/js/</targetdir>
+  <categoryname>interface file </categoryname>
+  <description>
+JQuery countdown timer javascript files
+  </description>
+  <filenames>
+    jquery.countdown-ar.js;
+    jquery.countdown-bg.js;
+    jquery.countdown-bn.js;
+    jquery.countdown-ca.js;
+    jquery.countdown-cs.js;
+    jquery.countdown-da.js;
+    jquery.countdown-de.js;
+    jquery.countdown-el.js;
+    jquery.countdown-es.js;
+    jquery.countdown-et.js;
+    jquery.countdown-fa.js;
+    jquery.countdown-fi.js;
+    jquery.countdown-fr.js;
+    jquery.countdown-gl.js;
+    jquery.countdown-he.js;
+    jquery.countdown-hr.js;
+    jquery.countdown-hu.js;
+    jquery.countdown-id.js;
+    jquery.countdown-it.js;
+    jquery.countdown-ja.js;
+    jquery.countdown.js;
+    jquery.countdown-ko.js;
+    jquery.countdown-lt.js;
+    jquery.countdown-lv.js;
+    jquery.countdown.min.js;
+    jquery.countdown-ms.js;
+    jquery.countdown-my.js;
+    jquery.countdown-nb.js;
+    jquery.countdown-nl.js;
+    jquery.countdown.pack.js;
+    jquery.countdown-pl.js;
+    jquery.countdown-pt-BR.js;
+    jquery.countdown-ro.js;
+    jquery.countdown-ru.js;
+    jquery.countdown-sk.js;
+    jquery.countdown-sl.js;
+    jquery.countdown-sr.js;
+    jquery.countdown-sr-SR.js;
+    jquery.countdown-sv.js;
+    jquery.countdown-th.js;
+    jquery.countdown-tr.js;
+    jquery.countdown-uk.js;
+    jquery.countdown-vi.js;
+    jquery.countdown-zh-CN.js;
+    jquery.countdown-zh-TW.js;
+   </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.css</glob>
+  <sourcedir>loncom/html/adm/countdown/</sourcedir> 
+  <targetdir dist='default'>home/httpd/html/adm/countdown/css/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+JQuery countdown timer CSS files
+  </description>
+  <filenames>
+    jquery.countdown.css;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.gif</glob>
+  <sourcedir>loncom/html/adm/countdown/</sourcedir> 
+  <targetdir dist='default'>home/httpd/html/adm/countdown/css/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+JQuery countdown timer Image file for Glowing countdown
+  </description>
+  <filenames>
+    countdownGlowing.gif;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.png</glob>
+  <sourcedir>loncom/html/adm/countdown/</sourcedir> 
+  <targetdir dist='default'>home/httpd/html/adm/countdown/css/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+JQuery countdown timer Image file for LED style countdown
+  </description>
+  <filenames>
+    countdownLED.png;
+  </filenames>
+</fileglob>
+
+
+<!-- JQuery spellchecker plugin -->
+
+<fileglob>
+  <glob>*.js</glob>
+  <sourcedir>loncom/html/adm/spellcheck/js/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/spellchecker/js/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JQuery spellchecker plugin
+  </description>
+  <filenames>
+    jquery.spellchecker.min.js;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.css</glob>
+  <sourcedir>loncom/html/adm/spellcheck/css/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/spellchecker/css/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JQuery spellchecker plugin
+  </description>
+  <filenames>
+    spellchecker.css;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.png</glob>
+  <sourcedir>loncom/html/adm/spellcheck/img/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/spellchecker/img/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JQuery spellchecker plugin
+  </description>
+  <filenames>
+    spellchecker_shadow.png;
+    spellcheck.png;
+  </filenames>
+</fileglob>
+<fileglob>
+  <glob>*.gif</glob>
+  <sourcedir>loncom/html/adm/spellcheck/img/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/spellchecker/img/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+    JQuery spellchecker plugin
+  </description>
+  <filenames>
+    spellchecker_bg.gif;
+  </filenames>
+</fileglob>
+
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/js/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/js/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.6.2, UI version 1.8.16
+  </description>
+  <filenames>
+	jquery-1.6.2.min.js;
+	jquery-ui-1.8.16.custom.min.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/css/smoothness/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.6.2, UI version 1.8.16 -- stylesheets
+  </description>
+  <filenames>
+	jquery-ui-1.8.16.custom.css;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.*</glob>
+  <sourcedir>loncom/html/adm/jQuery/css/smoothness/images/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/jQuery/css/smoothness/images/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery custom distribution of version 1.6.2, UI version 1.8.16 -- images for css.
+  </description>
+  <filenames>
+  	ui-bg_flat_0_aaaaaa_40x100.png;
+	ui-bg_flat_75_ffffff_40x100.png;
+	ui-bg_glass_55_fbf9ee_1x400.png;
+	ui-bg_glass_65_ffffff_1x400.png;
+	ui-bg_glass_75_dadada_1x400.png;
+	ui-bg_glass_75_e6e6e6_1x400.png;
+	ui-bg_glass_95_fef1ec_1x400.png;
+	ui-bg_highlight-soft_75_cccccc_1x100.png;
+	ui-icons_2e83ff_256x240.png;
+	ui-icons_222222_256x240.png;
+	ui-icons_454545_256x240.png;
+	ui-icons_888888_256x240.png;
+	ui-icons_cd0a0a_256x240.png;
+  </filenames>
+</fileglob>
+
+<!-- JQuery nicescroll plugin -->
+
+<fileglob>
+  <glob>*.js</glob>
+  <sourcedir>loncom/html/adm/nicescroll/js/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/nicescroll/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery nicescroll plugin javascript
+  </description>
+  <filenames>
+  jquery.nicescroll.min.js;
+  </filenames>
+</fileglob>
+
+<fileglob>
+  <glob>*.png</glob>
+  <sourcedir>loncom/html/adm/nicescroll/images/</sourcedir>
+  <targetdir dist='default'>home/httpd/html/adm/nicescroll/</targetdir>
+  <categoryname>interface file</categoryname>
+  <description>
+jQuery nicescroll plugin image
+  </description>
+  <filenames>
+  zoomico.png;
+  </filenames>
+</fileglob>
+
 <file>
 <source>loncom/interface/lontest.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lontest.pm</target>
@@ -1548,15 +5069,6 @@ Handles multiple-choice style responses.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonassignments.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonassignments.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Handles processing of assignments.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/interface/loncommunicate.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/loncommunicate.pm</target>
 <categoryname>handler</categoryname>
@@ -1606,6 +5118,109 @@ Handles navigational maps.
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/lonnavdisplay.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonnavdisplay.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Displays the nav map to the user
+  </description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>doc/man/Apache__lonnavmaps.3</source>
+<target dist='default'>usr/man/man3/Apache::lonnavmaps.3</target>
+<categoryname>doc</categoryname>
+<description>man page for lonnavmaps.pm</description>
+<build trigger='always run'>
+loncom/build/pod2man.sh ../../loncom/interface/lonnavmaps.pm &gt; \
+../../doc/man/Apache__lonnavmaps.3 &amp;&amp; echo 'manifying lonnavmaps.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/interface/lonnavmaps.pm
+</dependencies>
+</file>
+<file>
+<source>doc/lib/perl/Apache/lonnavmaps.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonnavmaps.html
+</target>
+<categoryname>doc</categoryname>
+<description>POD-derived page for lonnavmaps.pm</description>
+<build trigger='always run'>
+loncom/build/pod2html.sh ../../loncom/interface/lonnavmaps.pm &gt; \
+../../doc/lib/perl/Apache/lonnavmaps.html &amp;&amp; \
+echo 'pod2html lonnavmaps.pm'
+</build>
+<status>works/unverified</status>
+<dependencies>
+../../loncom/interface/lonnavmaps.pm
+</dependencies>
+</file>
+<file>
+<source>loncom/interface/lonselstudent.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonselstudent.pm</target>
+<categoryname>standard</categoryname>
+<description>
+re-usable student selection subs.
+</description>
+<status>testing/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonhelper.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonhelper.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Helper framework.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/helper/parameter.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/parameter.helper</target>
+<categoryname>handler</categoryname>
+<description>
+Parameter setting helper.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/helper/course.initialization.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/course.initialization.helper</target>
+<categoryname>handler</categoryname>
+<description>
+Course initialization helper.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/html/adm/helper/resettimes.helper</source>
+<target dist='default'>home/httpd/html/adm/helper/resettimes.helper</target>
+<categoryname>handler</categoryname>
+<description>
+Helper to resetting a student's first access time.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/html/adm/helper/newslot.helper</source>
+  <target dist='default'>home/httpd/html/adm/helper/newslot.helper</target>
+  <categoryname>handler</categoryname>
+  <description>
+Slot creation and editing helper.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonquickgrades.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonquickgrades.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Student quick grades interface.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonpreferences.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpreferences.pm</target>
 <categoryname>handler</categoryname>
@@ -1625,6 +5240,22 @@ Handles the production of printable file
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/entities.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/entities.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Converts html/xml entities to latex.
+</description>
+</file>
+<file>
+  <source>loncom/metadata_database/LONCAPA/lonmetadata.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonmetadata.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+      Provides a common interface to LON-CAPA metadata.
+  </description>
+</file>
+<file>
 <source>loncom/interface/lonsearchcat.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonsearchcat.pm</target>
 <categoryname>handler</categoryname>
@@ -1634,6 +5265,33 @@ Handles a searchable catalogue.
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/interface/lonsearchcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsearchcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handles a searches inside courses/communities.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonindexcourse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonindexcourse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Course/community Indexer
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonmysql.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonmysql.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Provides utility functions for creating and accessing mysql database tables.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonsearchcat.3</source>
 <target dist='default'>usr/man/man3/Apache::lonsearchcat.3</target>
 <categoryname>doc</categoryname>
@@ -1648,14 +5306,16 @@ loncom/build/pod2man.sh ../interface/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonsearchcat.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonsearchcat.html
+<source>doc/lib/perl/Apache/lonsearchcat.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonsearchcat.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonsearchcat.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../interface/lonsearchcat.pm &gt; \
-../../doc/api/Apache/lonsearchcat.html &amp;&amp; echo 'pod2html lonsearchcat.pm'
+../../doc/lib/perl/Apache/lonsearchcat.html &amp;&amp; \
+echo 'pod2html lonsearchcat.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1663,13 +5323,57 @@ loncom/build/pod2html.sh ../interface/lo
 </dependencies>
 </file>
 <file>
-<source>loncom/interface/londropadd.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/londropadd.pm</target>
+<source>loncom/interface/lonmanagekeys.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonmanagekeys.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Allows course coordinators to upload courselists in different formats, and
-automatically create users (if they do not exist already), assign them the
-role of student in a course, and add them to the classlist.
+Allows users with "mky" privileges to generate and manage course access keys.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonviewclasslist.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonviewclasslist.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows users (including students) to view the classlist of their course.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/loncoursegroups.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/loncoursegroups.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Allows course coordinators to create groups, modify existing groups (including    
+adding, expiring or deleting group members, or modifying group member privileges.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/longroup.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/longroup.pm</target>
+<categoryname>handler</categoryname>
+<description>
+General routines used to gather information about courses in a group, and their settings, and also to perform auto-group adds/drops when a user's role assignment changes.    
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/groupboards.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/groupboards.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Displays bulletin boards in a group and provides a mechanism for users with board creation privileges in a group to create new bulletin boards.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/grouproster.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/grouproster.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Display group membership information. Type of information available depends on group privileges of the user.  
 </description>
 <status>works/unverified</status>
 </file>
@@ -1683,12 +5387,28 @@ author_res_msg - send message to resourc
 user_crit_msg - send a critical message to a user. A critical message
 will require acknowledgment by the recipient and the sender will be notified.
 user_crit_received - routine to trigger acknowledgment.
-statuschange - change the status of a message (read, replied, forwarded, etc).
-The handler also displays messages, has routines to reply, etc.
 </description>
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/lonmsgdisplay.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmsgdisplay.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+statuschange - change the status of a message (read, replied, forwarded, etc).
+The handler displays messages, has routines to reply, etc.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/interface/courseprefs.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/courseprefs.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for displaying/modifying course configuration
+  </description>
+</file>
+<file>
 <source>loncom/homework/hint.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/hint.pm</target>
 <categoryname>handler</categoryname>
@@ -1699,13 +5419,49 @@ problems and assignments.
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/interface/lonspreadsheet.pm</source>
+<source>loncom/interface/spreadsheet/lonspreadsheet.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonspreadsheet.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Spreadsheets are completely web-based.
-They exist on the level of a whole course, a student, and individual
-assessments.
+The top level interface for the display and editing of spreadsheets.  There
+are three levels of spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/Spreadsheet.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/Spreadsheet.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the parent object of each spreadsheet type (classcalc, studentcalc,
+assesscalc).
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/classcalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/classcalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the course level spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/studentcalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/studentcalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the student level spreadsheet.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/spreadsheet/assesscalc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/assesscalc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Defines the specifics of the assessment level spreadsheet.
 </description>
 <status>works/unverified</status>
 </file>
@@ -1714,7 +5470,16 @@ assessments.
 <target dist='default'>home/httpd/lib/perl/Apache/lonparmset.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Handler to resolve ambiguous file locations
+Handler for setting and modifying both course preferences and coure parameters
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/slotrequest.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/slotrequest.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for students to add access slots
 </description>
 <status>works/unverified</status>
 </file>
@@ -1733,14 +5498,15 @@ loncom/build/pod2man.sh ../interface/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonparmset.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonparmset.html
+<source>doc/lib/perl/Apache/lonparmset.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonparmset.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonparmset.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../interface/lonparmset.pm &gt; \
-../../doc/api/Apache/lonparmset.html &amp;&amp; echo 'pod2html lonparmset.pm'
+../../doc/lib/perl/Apache/lonparmset.html &amp;&amp; \
+echo 'pod2html lonparmset.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1748,15 +5514,6 @@ loncom/build/pod2html.sh ../interface/lo
 </dependencies>
 </file>
 <file>
-<source>loncom/publisher/lonconstruct.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/lonconstruct.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Page wrapper for handling construction space.
-</description>
-<status>works/unverified</status>
-</file>
-<file>
 <source>loncom/publisher/lonpublisher.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpublisher.pm</target>
 <categoryname>handler</categoryname>
@@ -1781,14 +5538,16 @@ loncom/build/pod2man.sh ../publisher/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonpublisher.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonpublisher.html
+<source>doc/lib/perl/Apache/lonpublisher.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonpublisher.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonpublisher.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../publisher/lonpublisher.pm &gt; \
-../../doc/api/Apache/lonpublisher.html &amp;&amp; echo 'pod2html lonpublisher.pm'
+../../doc/lib/perl/Apache/lonpublisher.html &amp;&amp; \
+echo 'pod2html lonpublisher.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1800,11 +5559,29 @@ loncom/build/pod2html.sh ../publisher/lo
 <target dist='default'>home/httpd/lib/perl/Apache/lonmenu.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Has routines which control the remote control.
+Has routines which control the inline menu.
 </description>
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/interface/lonmainmenu.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmainmenu.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Displays the Main menu
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/portfolio.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/portfolio.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler to manage user portfolios
+</description>
+<status>unverified</status>
+</file>
+<file>
 <source>rat/lonpageflip.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonpageflip.pm</target>
 <categoryname>handler</categoryname>
@@ -1821,30 +5598,38 @@ Builds up frame set and loads in the rig
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/homeworkmenu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/homeworkmenu.html</target>
+  <source>rat/map.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/map.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Functions for manipulating the contents of maps
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+<source>rat/lonratmenu.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonratmenu.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Homework remote control.
+Creates horizontal menubar in advanced RAT
 </description>
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/annotator/admannotations.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/admannotations.pm</target>
+<source>loncom/html/res/adm/pages/chatroom.html</source>
+<target dist='default'>home/httpd/html/res/adm/pages/chatroom.html</target>
 <categoryname>handler</categoryname>
 <description>
-This will take annotations and then plug them into a page.
+Establishes frameset for chatroom
 </description>
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/html/res/adm/pages/bookmarkmenu/admbookmarks.pm</source>
-<target dist='default'>home/httpd/lib/perl/Apache/admbookmarks.pm</target>
+<source>loncom/html/res/adm/pages/annotator/admannotations.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/admannotations.pm</target>
 <categoryname>handler</categoryname>
 <description>
-This will take bookmarks and get/write/display them for the LON-CAPA user
-interface.
+This will take annotations and then plug them into a page.
 </description>
 <status>works/unverified</status>
 </file>
@@ -1883,14 +5668,14 @@ loncom/build/pod2man.sh ../../rat/lonpag
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonpage.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonpage.html
+<source>doc/lib/perl/Apache/lonpage.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonpage.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonnet.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../../rat/lonpage.pm &gt; \
-../../doc/api/Apache/lonpage.html &amp;&amp; echo 'pod2html lonpage.pm'
+../../doc/lib/perl/Apache/lonpage.html &amp;&amp; echo 'pod2html lonpage.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1902,7 +5687,7 @@ loncom/build/pod2html.sh ../../rat/lonpa
 <target dist='default'>home/httpd/lib/perl/Apache/lonuserstate.pm</target>
 <categoryname>handler</categoryname>
 <description>
-compile course into binary data structure (in loncom/rat)
+compile course into binary data structure
 </description>
 <status>works/unverified</status>
 </file>
@@ -1921,14 +5706,16 @@ loncom/build/pod2man.sh ../../rat/lonuse
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonuserstate.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonuserstate.html
+<source>doc/lib/perl/Apache/lonuserstate.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonuserstate.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonuserstate.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../../rat/lonuserstate.pm &gt; \
-../../doc/api/Apache/lonuserstate.html &amp;&amp; echo 'pod2html lonuserstate.pm'
+../../doc/lib/perl/Apache/lonuserstate.html &amp;&amp; \
+echo 'pod2html lonuserstate.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -1940,7 +5727,7 @@ loncom/build/pod2html.sh ../../rat/lonus
 <target dist='default'>home/httpd/lib/perl/Apache/lontex.pm</target>
 <categoryname>handler</categoryname>
 <description>
-Handler for tex files (somewhere in modules)
+Handler for tex files
 </description>
 <status>works/unverified</status>
 </file>
@@ -1990,6 +5777,24 @@ Tags Default Definition Module
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/lontable.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontable.pm</target>
+<categoryname>server standard</categoryname>
+<description>
+Table object
+</description>
+<status>works</status>
+</file>
+<file>
+<source>loncom/xml/lonlatextable.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonlatextable.pm</target>
+<categoryname>server standard</categoryname>
+<description>
+Simple subset replacement for LaTeX::Table
+</description>
+<status>works</status>
+</file>
+<file>
 <source>loncom/xml/run.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/run.pm</target>
 <categoryname>handler</categoryname>
@@ -2009,6 +5814,55 @@ implements &lt;script&gt;, &lt;scriptlib
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/xml/languagetags.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/languagetags.pm</target>
+<categoryname>handler</categoryname>
+<description>
+implements &lt;mt&gt;
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/homework/randomlylabel.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/randomlylabel.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for compositing images, and text together.
+</description>
+</file>
+<file>
+<source>loncom/homework/drawimage.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/drawimage.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for programtically defining an image
+</description>
+</file>
+<file>
+<source>loncom/homework/imagechoice.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/imagechoice.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for picking out locations on an image.
+</description>
+</file>
+<file>
+<source>loncom/homework/rankresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/rankresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for rankresponse
+</description>
+</file>
+<file>
+<source>loncom/homework/matchresponse.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/matchresponse.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler for matchresponse
+</description>
+</file>
+<file>
 <source>loncom/homework/randomlabel.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/randomlabel.pm</target>
 <categoryname>handler</categoryname>
@@ -2046,6 +5900,15 @@ resources
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/bridgetask.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/bridgetask.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+implements the tags for supporting bridge tasks
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/homework/response.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/response.pm</target>
 <categoryname>handler</categoryname>
@@ -2065,6 +5928,24 @@ handles request to the CAPA homework pro
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/homework/lonmaxima.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmaxima.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    routines to simplify talking to the maxima client
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/homework/lonr.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonr.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    routines to simplify talking to the R client
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/xml/Safe.pm</source>
 <target dist='default'>home/httpd/lib/perl/Safe.pm</target>
 <categoryname>handler</categoryname>
@@ -2076,13 +5957,24 @@ a way that does not threaten the operati
 <status>works/unverified</status>
 </file>
 <file>
-<source>loncom/auth/localauth.pm</source>
-<target dist='default'>home/httpd/lib/perl/localauth.pm</target>
-<categoryname>handler</categoryname>
-<description>
-Local authentication mechanism (meant to be customized).
-</description>
-<status>works/unverified</status>
+  <source>loncom/auth/localauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localauth-std.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+Local authentication mechanism.  The target file is meant as a template
+for a localauth.pm file.  The target file with the -std suffix is not
+used directly by any software program; it is just a template file.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/localauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localauth.pm</target>
+  <categoryname>conf</categoryname>
+  <description>
+Local authentication mechanism.  
+  </description>
+  <status>works/unverified</status>
 </file>
 <file>
 <source>loncom/auth/lonacc.pm</source>
@@ -2111,13 +6003,14 @@ loncom/build/pod2man.sh ../auth/lonacc.p
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonacc.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonacc.html</target>
+<source>doc/lib/perl/Apache/lonacc.html</source>
+<target dist='default'>
+home/httpd/html/adm/help/lib/perl/Apache/lonacc.html</target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonacc.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../auth/lonacc.pm &gt; \
-../../doc/api/Apache/lonacc.html &amp;&amp; echo 'pod2html lonacc.pm'
+../../doc/lib/perl/Apache/lonacc.html &amp;&amp; echo 'pod2html lonacc.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2134,6 +6027,59 @@ access handler for file transfers
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/lontokacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontokacc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+handler for inter-server transfer of token accessed files, includes
+cleanup handler to remove file when successfully done
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/auth/lonuploadedacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonuploadedacc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+access handler for user uploaded files
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/auth/lonwebdavacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwebdavacc.pm</target>
+<categoryname>handler</categoryname>
+<description>authorization for webDAV access to Author Spaces</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/lontrans.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lontrans.pm</target>
+<categoryname>handler</categoryname>
+<description>
+URI to filename translation
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/lonenc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonenc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Encryption and decryption of URIs
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/lonencurl.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonencurl.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Handler that takes care of decrypting request URL's
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>doc/man/Apache__lonracc.3</source>
 <target dist='default'>usr/man/man3/Apache::lonracc.3</target>
 <categoryname>doc</categoryname>
@@ -2148,14 +6094,14 @@ loncom/build/pod2man.sh ../auth/lonracc.
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonracc.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonracc.html
+<source>doc/lib/perl/Apache/lonracc.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonracc.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonracc.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../auth/lonracc.pm &gt; \
-../../doc/api/Apache/lonracc.html &amp;&amp; echo 'pod2html lonracc.pm'
+../../doc/lib/perl/Apache/lonracc.html &amp;&amp; echo 'pod2html lonracc.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2195,14 +6141,14 @@ loncom/build/pod2man.sh ../auth/loncacc.
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/loncacc.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/loncacc.html
+<source>doc/lib/perl/Apache/loncacc.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/loncacc.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for loncacc.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../auth/loncacc.pm &gt; \
-../../doc/api/Apache/loncacc.html &amp;&amp; echo 'pod2html loncacc.pm'
+../../doc/lib/perl/Apache/loncacc.html &amp;&amp; echo 'pod2html loncacc.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2210,6 +6156,18 @@ loncom/build/pod2html.sh ../auth/loncacc
 </dependencies>
 </file>
 <file>
+<source>loncom/auth/lonstatusacc.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonstatusacc.pm</target>
+<categoryname>handler</categoryname>
+<description>
+This module provides access to server status - Apache's server-status and
+files in the /home/httpd/html/lon-status directory, for which it is invoked 
+by the URL-related pattern syntax:
+<tt>LocationMatch "^/+lon-status/.*"</tt>.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonauth.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonauth.pm</target>
 <categoryname>handler</categoryname>
@@ -2224,6 +6182,48 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+<source>loncom/auth/restrictedaccess.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/restrictedaccess.pm</target>
+<categoryname>handler</categoryname>
+<description>Passphrase entry form and verification for access to passphrase-protected portfolio files</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/auth/blockedaccess.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/blockedaccess.pm</target>
+<categoryname>handler</categoryname>
+<description>Information about course-based blocking conditions for files with blocked access (currently affects portfolio files)</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/auth/lonipcheck.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonipcheck.pm</target>
+<categoryname>handler</categoryname>
+<description>Checks IP-based access control settings - disable subsequent PerlHandlers if client's IP is blocked</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/auth/londatecheck.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/londatecheck.pm</target>
+<categoryname>handler</categoryname>
+<description>Checks contentopen/close settings disable subsequent PerlHandlers if not open</description>
+<status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/publiccheck.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/publiccheck.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Checks if resource is public and allows unauthenticated access if it is.</description>
+  <status>works/unverified</status>
+</file>
+<file>
+<source>loncom/auth/lonwebdavauth.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwebdavauth.pm</target>
+<categoryname>handler</categoryname>
+<description>authenticate, set up session environment for webDAV</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/auth/lonlogout.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonlogout.pm</target>
 <categoryname>handler</categoryname>
@@ -2231,12 +6231,81 @@ loncom/build/pod2html.sh ../auth/loncacc
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/auth/migrateuser.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/migrateuser.pm</target>
+  <categoryname>handler</categoryname>
+  <description>auto logs in a remote user</description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/switchserver.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/switchserver.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Setups the transfer of a user between servers</description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/checkauthen.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/checkauthen.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Checks if a user's cookie exists and is valid</description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/simpleauthen.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/simpleauthen.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Always returns DENIED</description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/lonshibauth.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonshibauth.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Redirect Shibboleth authentication to Single Sign On 
+               i.e., to: /adm/sso
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/lonshibacc.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonshibacc.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Authorization handler used to remove trailing @internet dom 
+               from Shibboleth authenticated username (e.g., @mit.edu).
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/auth/lonnoshib.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonnoshib.pm</target>
+  <categoryname>handler</categoryname>
+  <description>Content handler for /adm/sso when Shibboleth auth is inactive.
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/html/adm/sso</source>
+  <target dist='default'>home/httpd/html/adm/sso</target>
+  <categoryname>interface file</categoryname>
+  <description>HTML page to redirect browser request for /adm/sso to
+  /adm/roles when Shibboleth SSO not in use (i.e., mod_shib not loaded).
+  </description>
+  <status>works/unverified</status>
+</file>
+<file>
 <source>loncom/lonnet/perl/lonrep.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonrep.pm</target>
 <categoryname>handler</categoryname>
 <description>replication</description>
 </file>
 <file>
+<source>loncom/lonnet/perl/lonuploadrep.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonuploadrep.pm</target>
+<categoryname>handler</categoryname>
+<description>copying of uploaded files</description>
+</file>
+<file>
 <source>loncom/auth/lonroles.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonroles.pm</target>
 <categoryname>handler</categoryname>
@@ -2265,14 +6334,14 @@ loncom/build/pod2man.sh ../auth/lonroles
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonroles.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonroles.html
+<source>doc/lib/perl/Apache/lonroles.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonroles.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonroles.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../auth/lonroles.pm &gt; \
-../../doc/api/Apache/lonroles.html &amp;&amp; echo 'pod2html lonroles.pm'
+../../doc/lib/perl/Apache/lonroles.html &amp;&amp; echo 'pod2html lonroles.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2280,6 +6349,15 @@ loncom/build/pod2html.sh ../auth/lonrole
 </dependencies>
 </file>
 <file>
+<source>loncom/interface/lonsource.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonsource.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Problem source code viewer
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/interface/lonindexer.pm</source>
 <target dist='default'>home/httpd/lib/perl/Apache/lonindexer.pm</target>
 <categoryname>handler</categoryname>
@@ -2303,14 +6381,15 @@ loncom/build/pod2man.sh ../interface/lon
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonindexer.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonindexer.html
+<source>doc/lib/perl/Apache/lonindexer.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonindexer.html
 </target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonindexer.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../interface/lonindexer.pm &gt; \
-../../doc/api/Apache/lonindexer.html &amp;&amp; echo 'pod2html lonindexer.pm'
+../../doc/lib/perl/Apache/lonindexer.html &amp;&amp; \
+echo 'pod2html lonindexer.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2360,13 +6439,14 @@ loncom/build/pod2man.sh ../lonnet/perl/l
 </dependencies>
 </file>
 <file>
-<source>doc/api/Apache/lonnet.html</source>
-<target dist='default'>home/httpd/html/adm/help/api/Apache/lonnet.html</target>
+<source>doc/lib/perl/Apache/lonnet.html</source>
+<target dist='default'>home/httpd/html/adm/help/lib/perl/Apache/lonnet.html
+</target>
 <categoryname>doc</categoryname>
 <description>POD-derived page for lonnet.pm</description>
 <build trigger='always run'>
 loncom/build/pod2html.sh ../lonnet/perl/lonnet.pm &gt; \
-../../doc/api/Apache/lonnet.html &amp;&amp; echo 'pod2html lonnet.pm'
+../../doc/lib/perl/Apache/lonnet.html &amp;&amp; echo 'pod2html lonnet.pm'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -2374,17 +6454,39 @@ loncom/build/pod2html.sh ../lonnet/perl/
 </dependencies>
 </file>
 <file>
+<source>loncom/lonnet/perl/londns.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/londns.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Domain information serving.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>loncom/html/index.html</source>
 <target dist='default'>home/httpd/html/index.html</target>
 <categoryname>interface file</categoryname>
 <description>bumps to login</description>
 </file>
-<link>
-<linkto>etc/mime.types</linkto>
+<file>
+<source>loncom/html/index.html</source>
+<target dist='default'>home/httpd/html/origindex.html</target>
+<categoryname>interface file</categoryname>
+<description>bumps to login, backup for takeonline</description>
+</file>
+<file>
+<source>loncom/html/favicon.ico</source>
+<target dist='default'>home/httpd/html/favicon.ico</target>
+<categoryname>interface file</categoryname>
+<description>Bookmark and tab icon</description>
+</file>
+<file>
+<source>loncom/mime.types</source>
 <target dist='default'>etc/httpd/conf/mime.types</target>
-<categoryname>symbolic link</categoryname>
-<description>symbolic link to /etc/mime.types</description>
-</link>
+<target dist='sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/apache2/mime.types</target>
+<categoryname>www static conf</categoryname>
+<description>Expanded mime.types</description>
+</file>
 <link>
 <linkto>home/httpd/html/res</linkto>
 <target dist='default'>home/httpd/html/raw</target>
@@ -2410,6 +6512,15 @@ which is restricted based on file or ser
 </description>
 </file>
 <file>
+<source>loncom/html/adm/nowebdav.html</source>
+<target dist='default'>home/httpd/html/adm/nowebdav.html</target>
+<categoryname>interface file</categoryname>
+<description>
+static html page that is shown when an attempt is made to access 
+an inaccessible path using webDAV.
+</description>
+</file>
+<file>
 <source>loncom/html/adm/help/searchcat.html</source>
 <target dist='default'>home/httpd/html/adm/help/searchcat.html</target>
 <categoryname>interface file</categoryname>
@@ -2434,11 +6545,11 @@ Parameter input window.
 </description>
 </file>
 <file>
-<source>rat/client/code.html</source>
-<target dist='default'>home/httpd/html/adm/rat/code.html</target>
+<source>rat/client/ratcode.js</source>
+<target dist='default'>home/httpd/html/res/adm/includes/ratcode.js</target>
 <categoryname>interface file</categoryname>
 <description>
-javascript
+javascript for horizontal menubar in RAT
 </description>
 </file>
 <file>
@@ -2457,6 +6568,22 @@ bumper
 A blank page with very minimal HTML structural elements.
 </description>
 </file>
+<file>
+<source>rat/client/loading.html</source>
+<target dist='default'>home/httpd/html/adm/rat/loading.html</target>
+<categoryname>interface file</categoryname>
+<description>
+A blank page which calls drawwindow in its opener after being loaded.
+</description>
+</file>
+<file>
+<source>loncom/includepsheader.ps</source>
+<target dist='default'>home/httpd/lib/includepsheader.ps</target>
+<categoryname>interface file</categoryname>
+<description>
+Extra header for dvips
+</description>
+</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>rat/images/</sourcedir>
@@ -2591,7 +6718,8 @@ lonlogo_broken.gif;
 lonlogo_broken_tsp.gif;
 lonlogo_broken.eps;
 lonlogo_broken.jpg;
-lonlogo_broken.mov
+lonlogo_broken.mov;
+genericstudent_tn.gif
 </filenames>
 </fileglob>
 <fileglob>
@@ -2600,74 +6728,156 @@ lonlogo_broken.mov
 <targetdir dist='default'>home/httpd/html/adm/lonIcons/</targetdir>
 <categoryname>graphic file</categoryname>
 <description>
-logos
+logos and general widget icons
 </description>
 <filenames>
 SMETE_white.gif;
-aboutlon.gif
-accessbutton.gif
+aboutlon.gif;
+aboutlon_de.gif;
+aboutlon_pt.gif;
+accessbutton.gif;
+accessbutton_de.gif;
+accessbutton_pt.gif;
+angry.gif;
+arrow.closed.gif;
+arrow.open.gif;
+arrow.up.gif;
 arrow_up.gif;
+avi.gif;
+baeh.gif;
+bigsmile.gif;
+branch.gif;
 cab.gif;
 cab_big.gif;
 capapanel.gif;
+check.gif;
 class.gif;
 class_big.gif;
+closepage.gif;
+clickhere.gif;
+coolindiff.gif;
+coolsmile.gif;
+cry.gif;
+doc.gif;
+doc_big.gif;
 dvi.gif;
 dvi_big.gif;
 eps.gif;
 eps_big.gif;
 exam.gif;
 exam_big.gif;
-fillbottom.gif
-fillleft.gif
-fillright.gif
-filltop.gif
+face-angel.png;
+face-angry.png;
+face-cool.png;
+face-crying.png;
+face-embarrassed.png;
+face-glasses.png;
+face-kiss.png;
+face-plain.png;
+face-quiet.png;
+face-raspberry.png;
+face-sad.png;
+face-sick.png;
+face-smile.png;
+face-smile-big.png;
+face-surprise.png;
+face-uncertain.png;
+face-wink.png;
+fillbottom.gif;
+fillleft.gif;
+fillright.gif;
+filltop.gif;
 folder_closed.gif;
 folder_opened.gif;
 folder_pointer_closed.gif;
 folder_pointer_opened.gif;
+food-cake.png;
+face-ninja.png;
+face-pirate.png;
+food-pizza.png;
 form.gif;
 form_big.gif;
+frowny.gif;
 gif.gif;
 gif_big.gif;
-header.gif
+header.gif;
+header.png;
+heart.png;
+helpdesk.gif;
+helpgateway.gif;
+hrrm.gif;
 htm.gif;
 html.gif;
 html_big.gif;
+huh.gif;
 jar.gif;
 jar_big.gif;
+jpeg.gif;
 jpg.gif;
 jpg_big.gif;
 latex.gif;
-lite.gif
+library.gif;
+lightGreyBG.png;
+lipsrsealed.gif;
+lite.gif;
 liteani.gif;
-litetext.gif
+litetext.gif;
 lolpanel.gif;
 lonanim.gif;
 lonanimend.gif;
-loncapalogo.gif
+loncapalogo.gif;
 lonhelplogos.gif;
 lonhelptop.gif;
 lonlogo.gif;
 lonlogos.gif;
-lowerleft.gif
-lowerright.gif
+lonUtilityIcon.png;
+lowerleft.gif;
+lowerright.gif;
+mailbkgrd.gif;
+mailto.gif;
+minilogo.gif;
 meta.gif;
 meta_big.gif;
 mov.gif;
 mov_big.gif;
 move_up.gif;
 move_down.gif;
+mpeg.gif;
+mpg.gif;
+navmap.correct.gif;
+navmap.partial.gif;
+navmap.ellipsis.gif;
+navmap.open.gif;
+navmap.page.open.gif;
+navmap.page.closed.gif;
+navmap.page.open.nomanip.gif;
+navmap.page.closed.nomanip.gif;
+navmap.wrong.gif;
+navmap.folder.open.gif;
+navmap.folder.closed.gif;
+navmap.folder.open.nomanip.gif;
+navmap.folder.closed.nomanip.gif;
+neutral.gif;
+open.gif;
+opinion-agree.png;
+opinion-disagree.png;
 page.gif;
 page_big.gif;
 pdf.gif;
 pdf_big.gif;
 png.gif;
 png_big.gif;
+ppt.gif;
+ppt_big.gif;
 problem.gif;
 problem_big.gif;
 ps.gif;
 ps_big.gif;
+rolleyes.gif;
+rose.png;
+qt.gif;
+qti.gif;
+qtm.gif;
 quill.gif;
 quiz.gif;
 quiz_big.gif;
@@ -2676,27 +6886,38 @@ sequence.gif;
 sequence_big.gif;
 server.gif;
 server_big.gif;
+shocked.gif;
+smiley.gif;
+spreadsheet.gif;
 srvbad.gif;
 srvempty.gif;
 srvgood.gif;
 srvhalf.gif;
 srvnull.gif;
+stift.gif;
 survey.gif;
 survey_big.gif;
+tabbgleft.gif;
+tabbgright.gif;
+task.gif;
+task_big.gif;
 tex.gif;
 tex_big.gif;
+tth.gif;
+text.gif;
+transparent1x1.gif;
 txt.gif;
 txt_big.gif;
 unknown.gif;
 unknown_big.gif;
-upperleft.gif
-upperright.gif
+upperleft.gif;
+upperright.gif;
 user.gif;
 user_big.gif;
-userauthentication.gif
 wav.gif;
 wav_big.gif;
 white_space_20_22.gif;
+whitespace_21.gif;
 whitespace1.gif;
 whitespace10.gif;
 whitespace2.gif;
@@ -2707,6 +6928,10 @@ whitespace6.gif;
 whitespace7.gif;
 whitespace8.gif;
 whitespace9.gif;
+wink.gif;
+wmv.gif;
+xls.gif;
+xls_big.gif;
 xml.gif;
 xml_big.gif;
 zip.gif;
@@ -2719,26 +6944,40 @@ zip_big.gif
 <targetdir dist='default'>home/httpd/html/adm/lonMisc/</targetdir>
 <categoryname>graphic file</categoryname>
 <description>
-Miscellaneous resources.  Respectively: button for catalog,
-button to set parameters in a page,
-button to do regrades, button to check on problem submissions,
+Miscellaneous resources.
 </description>
 <filenames>
 authorfeed.gif;
+blackdot.gif;
 bomb.gif;
+smallFAQ.gif;
+smallBug.gif;
 cat_button.gif;
+cat_button.png;
 chat.gif;
 eval_button.gif;
+eval_button.png;
 feedback.gif;
 pprm_button.gif;
+pprm_button.png;
 pgrd_button.gif;
-subm_button.gif
+pgrd_button.png;
+subm_button.gif;
+subm_button.png;
 </filenames>
 </fileglob>
 <file>
-<source>loncom/xml/tth.pm</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/tth.pm</target>
-<target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/tth.pm</target>
+<source>loncom/xml/algebra/AlgParser.pm</source>
+<target dist='default'>home/httpd/lib/perl/AlgParser.pm</target>
+<categoryname>system file</categoryname>
+<description>
+perl module for invoking functions specific to Algebra-to-TeX-to-HTML conversion
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>modules/TexConvert/tthperl/tth.pm</source>
+<target dist='default'>home/httpd/lib/perl/tth.pm</target>
 <categoryname>system file</categoryname>
 <description>
 perl module for invoking functions specific to TeX-to-HTML conversion
@@ -2762,9 +7001,131 @@ tested
 <status>works/unverified</status>
 </file>
 <file>
+  <source>loncom/lonlocal.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonlocal.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     lonc/d handler for doing a local filesystem based init:
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+  <source>loncom/lonssl.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/lonssl.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     lonc/d handler for doing a remote SSL based init:
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+  <source>loncom/Lond.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/Lond.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     Encapsulates functionality used by lond and lonnet.
+  </description>
+  <status>in progress</status>
+</file>
+<file>
+  <source>loncom/LondConnection.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LondConnection.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+     Manages a connection between a lonc proxy daemon and the lond server
+     in the remote node.
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+  <source>loncom/LondTransaction.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/LondTransaction.pm</target>
+  <categoryname>system file</categoryname>
+  <description>
+	Handles a single lon-capa insternal transaction
+  </description>
+  <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/HashIterator.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/HashIterator.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+      Provides support to iterate through opaque hashes hidden e.g. within 
+      object private data.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/Queue.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/Queue.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+     Provides a FIFO queue class.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/types/Stack.pm</source>
+   <target dist='default'>home/httpd/lib/perl/LONCAPA/Stack.pm</target>
+   <categoryname>system file</categoryname>
+   <description>
+     Provides a LIFO stack class.
+   </description>
+   <status>works/verified</status>
+</file>
+<file>
+   <source>loncom/loncnew</source>
+   <target dist='default'>home/httpd/perl/loncnew</target>
+   <categoryname>script</categoryname>
+   <description>
+	  Proxy server for remote loncapa requests.
+          Needs CPAN Event module.
+   </description>
+</file>
+<file>
+<source>loncom/configuration/Configuration.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Configuration.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Configuration file reader (looks in /etc/httpd/conf/); accepts
+a list of *.conf files to inspect for PerlSetVar key/value
+entries.
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/configuration/Firewall.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Firewall.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Provides methods to open and close firewall ports used for  
+for socket-based communication between LON-CAPA servers
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/configuration/Checksumming.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/Checksumming.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Provides routine to checksum perl modules, perl scripts, cgi scripts,
+language lexicons, and static configuration file on current server
+</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/ConfigFileEdit.pm</source>
+<target dist='default'>home/httpd/lib/perl/LONCAPA/ConfigFileEdit.pm</target>
+<categoryname>system file</categoryname>
+<description>
+Configuration file editing module
+</description>
+<status>works/unverified</status>
+</file>
+<file>
 <source>modules/TexConvert/tthperl/tth.so</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/tth.so</target>
-<target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/tth.so</target>
+<target dist='default'>home/httpd/lib/perl/tth.so</target>
 <categoryname>system file</categoryname>
 <description>
 shared library file for dynamic loading and unloading
@@ -2775,19 +7136,29 @@ CVS users.  (You can safely rely on the
 present on your system... don't worry about warnings
 related to this file during the build process.)
 </note>
-<build trigger='run if dependencies change'>
+<build trigger='always run'>
 modules/TexConvert/tthperl/commands
 </build>
 <status>works/unverified</status>
 <dependencies>
-../tthdynamic/tthfunc.c;
-../ttmdynamic/ttmfunc.c
+commands;
+compiles/tth.so.i386;
+compiles/tth.so.x86_64;
+compiles/tth.so.i386.perl.5.10;
+compiles/tth.so.x86_64.perl.5.10;
+compiles/tth.so.i386.perl.5.12;
+compiles/tth.so.x86_64.perl.5.12;
+compiles/tth.so.i386.perl.5.14;
+compiles/tth.so.x86_64.perl.5.14;
+compiles/tth.so.i386.perl.5.16;
+compiles/tth.so.x86_64.perl.5.16;
+compiles/tth.so.i386.debian5;
+compiles/tth.so.x86_64.debian5
 </dependencies>
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.pm</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.pm</target>
-<target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.pm</target>
+<target dist='default'>home/httpd/lib/perl/capa.pm</target>
 <categoryname>system file</categoryname>
 <description>
 perl module for invoking functions specific to CAPA
@@ -2801,8 +7172,7 @@ the build process however.
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.bs</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.bs</target>
-<target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.bs</target>
+<target dist='default'>home/httpd/lib/perl/capa.bs</target>
 <categoryname>system file</categoryname>
 <description>
 bootstrap file associated with dynamic loading of this module on multiple
@@ -2817,8 +7187,7 @@ the build process however.
 </file>
 <file>
 <source>loncom/homework/caparesponse/capa.so</source>
-<target dist='default'>usr/lib/perl5/site_perl/5.005/capa.so</target>
-<target dist='redhat7 redhat7.1'>usr/lib/perl5/site_perl/5.6.0/capa.so</target>
+<target dist='default'>home/httpd/lib/perl/capa.so</target>
 <categoryname>system file</categoryname>
 <description>
 shared library file for dynamic loading and unloading
@@ -2828,7 +7197,58 @@ loncom/homework/caparesponse/commands
 </build>
 <dependencies>
 caparesponse.c;
-caparesponse.pm
+caparesponse.pm;
+README;
+Makefile.PL;
+capa.i;
+commands;
+../../../CAPA/pProj/Makefile;
+../../../CAPA/pProj/capaGrammarDef.y;
+../../../CAPA/pProj/capaFormula.y;
+../../../CAPA/pProj/capaLexerDef.flex;
+../../../CAPA/pProj/capaFunction.c;
+../../../CAPA/pProj/capaParserUtils.c;
+../../../CAPA/pProj/capaMapExpr.c;
+../../../CAPA/pProj/capaUnit.c;
+../../../CAPA/pProj/com.c;
+../../../CAPA/pProj/linpack.c;
+../../../CAPA/pProj/ranlib.c;
+../../../CAPA/pProj/capaCgiUtils.c;
+../../../CAPA/pProj/capaSubjective.c;
+../../../CAPA/pProj/capaRQO.c;
+../../../CAPA/pProj/capaFormulaLexer.c;
+../../../CAPA/pProj/capaCommon.c;
+../../../CAPA/pProj/capaCommon.h;
+../../../CAPA/pProj/ranlib.h;
+../../../CAPA/pProj/capaCGI.h;
+../../../CAPA/pProj/capaFunction.h;
+../../../CAPA/pProj/capaRQO.h;
+../../../CAPA/pProj/capaParser.h;
+../../../CAPA/pProj/lex_debug.h
+</dependencies>
+</file>
+<file>
+<source>loncom/cgi/mimeTeX/mimetex.cgi</source>
+<target dist='default'>home/httpd/cgi-bin/mimetex.cgi</target>
+<categoryname>script</categoryname>
+<description>
+cgi binary for doing TeX -> math translation
+</description>
+<build trigger='always run'>
+loncom/cgi/mimeTeX/commands
+</build>
+<dependencies>
+commands;
+gfuntype.c;
+gifsave.c;
+loncapanewcommands.h;
+mimetex.c;
+mimetex.h;
+mimetex.html;
+README;
+texfonts.h;
+LICENSE;
+VERSION;
 </dependencies>
 </file>
 <fileglob>
@@ -2912,6 +7332,39 @@ Provides many functions for the &lt;scri
 Functions are documented in CVS:loncapa/doc/homework/homework5.html.
 </description>
 </file>
+
+<file>
+  <source>loncom/homework/task.css</source>
+  <target dist='default'>home/httpd/html/res/adm/includes/task.css</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Style definitions for task display
+  </description>
+</file>
+<file>
+  <source>loncom/homework/task_ie.css</source>
+  <target dist='default'>home/httpd/html/res/adm/includes/task_ie.css</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Style definitions for task display for IE 6 and earlier
+  </description>
+</file>
+<file>
+  <source>loncom/homework/task_ie7.css</source>
+  <target dist='default'>home/httpd/html/res/adm/includes/task_ie7.css</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Style definitions for task display for IE 7
+  </description>
+</file>
+<file>
+  <source>loncom/homework/task_grading.js</source>
+  <target dist='default'>home/httpd/html/res/adm/includes/task_grading.js</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Javascript to make the grading screen of task easier to use
+  </description>
+</file>
 <file>
 <source>loncom/homework/capa.units</source>
 <target dist='default'>home/httpd/html/res/adm/includes/capa.units</target>
@@ -2921,100 +7374,418 @@ Define unit prefixing and conversion for
 </description>
 </file>
 <fileglob>
+<glob>*.jpg</glob>
+<sourcedir>loncom/html/adm/lonInterFace/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonInterFace/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Pages headers</description>
+<filenames>
+admin.jpg;
+author.jpg;
+coordinator.jpg;
+header.jpg;
+student.jpg;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.jpg</glob>
+<sourcedir>loncom/html/adm/lonDomLogos/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonDomLogos/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Logos of LON-CAPA domains (jpg)</description>
+<filenames>
+headermsu.jpg;
+headertccfl.jpg;
+header_fsu.jpg;
+header_fsuK12.jpg;
+headerhope.jpg;
+jmsbanner.jpg;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/adm/lonDomLogos/</sourcedir>
+<targetdir dist='default'>home/httpd/html/adm/lonDomLogos/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>Logos of LON-CAPA domains (gif)</description>
+<filenames>
+103.gif;
+gerd.gif;
+mio.gif;
+msuvu.gif;
+ohiou.gif;
+rhs.gif;
+sfu.gif;
+tmcc.gif;
+umich.gif;
+worf.gif;
+annarbor.gif;
+elps.gif;
+gwu.gif;
+msudemo.gif;
+ndsu.gif;
+physnet.gif;
+sc.gif;
+Selwyn.gif;
+ucf.gif;
+unihalle.gif;
+wscc.gif;
+cps.gif;
+fsu.gif;
+fsuK12.gif;
+hope.gif;
+vcu.gif;
+lsd.gif;
+msu.gif;
+jms.gif;
+nsdl.gif;
+pmm.gif;
+sunysb.gif;
+udel.gif;
+uz.gif;
+fvl.gif;
+csm.gif;
+nau.gif;
+nagoya.gif;
+kanazawa.gif;
+colorado.gif;
+acadiau.gif;
+psuerie.gif;
+redford.gif;
+huji.gif;
+ifusp.gif;
+ucsc.gif;
+uiuc.gif;
+uiucheader.gif;
+koinonia.gif;
+waverly.gif;
+cmich.gif;
+UNICAMP.gif;
+lakefenton.gif;
+grandblanc.gif;
+glps.gif;
+BCHS.gif;
+headersfu.gif;
+uwsp.gif;
+tccfl.gif;
+bsu.gif;
+wmston.gif;
+headerharvard.gif;
+harvard.gif;
+uga.gif;
+headeruga.gif;
+covenantchristianhs.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.tab</glob>
+<sourcedir>loncom/html/adm/lonDomColors/</sourcedir>
+<targetdir dist='default'>home/httpd/lonTabs/lonDomColors/</targetdir>
+<categoryname>conf</categoryname>
+<description>Designs of LON-CAPA domains</description>
+<filenames>
+annarbor.tab;
+default.tab;
+msu.tab;
+csm.tab;
+huji.tab;
+nau.tab;
+nagoya.tab;
+koinonia.tab;
+kanazawa.tab;
+colorado.tab;
+acadiau.tab;
+psuerie.tab;
+redford.tab;
+cmich.tab;
+ifusp.tab;
+jms.tab;
+ucsc.tab;
+uiuc.tab;
+UNICAMP.tab;
+lakefenton.tab;
+grandblanc.tab;
+fsu.tab;
+fsuK12.tab;
+hope.tab;
+vcu.tab;
+sfu.tab;
+wmston.tab;
+worf.tab;
+tccfl.tab;
+harvard.tab;
+uga.tab;
+tmcc.tab;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.gif</glob>
+<sourcedir>loncom/html/res/adm/pages/pt/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/pt/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>icons used for the Portuguese LON-CAPA user interface</description>
+<filenames>
+anno_pt.gif;
+anot_pt.gif;
+bchat_pt.gif;
+catalog_pt.gif;
+ccrs_pt.gif;
+chrt_pt.gif;
+com_pt.gif;
+courses_pt.gif;
+cprv_pt.gif;
+cstr_pt.gif;
+docs_pt.gif;
+egrd_pt.gif;
+enrl_pt.gif;
+eval_pt.gif;
+fdbk_pt.gif;
+grds_pt.gif;
+keys_pt.gif;
+logout_pt.gif;
+nav_pt.gif;
+parm_pt.gif;
+pref_pt.gif;
+prt_pt.gif;
+res_pt.gif;
+roles_pt.gif;
+sbkm_pt.gif;
+spacer_pt.gif;
+sprs_pt.gif;
+src_pt.gif;
+stat_pt.gif;
+vbkm_pt.gif;
+</filenames>
+</fileglob>
+<fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/</sourcedir>
 <targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
 <categoryname>graphic file</categoryname>
 <description>icons used for the entire LON-CAPA user interface</description>
 <filenames>
-a.gif;
-anot.gif;
-b.gif;
-back.gif;
-bkm.gif;
-brws.gif;
-c.gif;
-catalog.gif;
-ccrs.gif;
 chat.gif;
-chrt.gif;
-com.gif;
-courses.gif;
-cprv.gif;
-cstr.gif;
-d.gif;
+close-all-folders.gif;
 dempty.gif;
-e.gif;
-egrd.gif;
+edittoplevel.gif;
 empty.gif;
-enrl.gif;
-eval.gif;
-f.gif;
-fdbk.gif;
 feedback.gif;
-forw.gif;
-g.gif;
-grds.gif;
 group.gif;
-h.gif;
 help.gif;
-hyphen.gif;
-i.gif;
 info.gif;
-j.gif;
-k.gif;
-l.gif;
 ledblink.gif;
 ledgreen.gif;
 ledoff.gif;
 ledon.gif;
-ledsend.gif;
-logout.gif;
-m.gif;
-mrk.gif;
-n.gif;
-nav.gif;
+mark-discussionentries-read.gif;
 next.gif;
-o.gif;
-p.gif;
-parm.gif;
-pgrd.gif;
-pparm.gif;
-pref.gif;
-prev.gif;
-prt.gif;
-q.gif;
+nothumb.gif;
+open-all-folders.gif;
+open-first-problem.gif;
 qempty.gif;
-r.gif;
-reload.gif;
-remotebg.gif;
-res.gif;
-roles.gif;
-s.gif;
-sbkm.gif;
-space.gif;
-spacer.gif;
-sprs.gif;
-src.gif;
-stat.gif;
-subm.gif;
-t.gif;
-title.gif;
-u.gif;
-v.gif;
-vbkm.gif;
-w.gif;
-x.gif;
-y.gif;
-z.gif
+refresh.gif;
+show-all.gif;
+show-incomplete-problems.gif;
+star.gif;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.png</glob>
+<sourcedir>loncom/html/res/adm/pages/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>main menu graphical icons</description>
+<filenames>
+anno.png;
+bchat.png;
+ccat.png;
+ccrs.png;
+clst.png;
+conf.png;
+courses.png;
+crsconf.png;
+docs.png;
+editmap.png;
+eval.png;
+grds.png;
+grps.png;
+mail.png;
+new.png;
+pgrd.png;
+pref.png;
+roles.png;
+sprs.png;
+vbkm.png;
+anot.png;
+anot2.png;
+blog.png;
+chrt.png;
+cprv.png;
+del.png;
+egrd.png;
+fdbk.png;
+keys.png;
+list.png;
+mcrs.png;
+parm.png;
+port.png;
+prt.png;
+rcrs.png;
+rsrv.png;
+sbkm.png;
+src.png;
+srvr.png;
+subm.png;
+thumbsup.png;
+thumbsup_gray.png;
+thumbsup_novote.png;
+thumbsdown.png;
+thumbsdown_gray.png;
+thumbsdown_novote.png;
+webpage.png;
+back.png;
+catalog.png;
+com.png;
+cstr.png;
+enrl.png;
+forw.png;
+logout.png;
+nav.png;
+pcstr.png;
+pparm.png;
+pub.png;
+res.png;
+rtrv.png;
+sctr.png;
+stat.png;
+pdfupload.png;
+course_ini.png;
+dismath.png;
+feedback.png;
+mngcu.png;
+prob_ana.png;
+process-stop.png;
+role_hotlist.png;
+reload.png;
+self_enroll.png;
+survey_rep.png;
+subdocs.png;
+tolastloc.png;
+uplusr.png;
+</filenames>
+</fileglob>
+<fileglob>
+<glob>*.png</glob>
+<sourcedir>loncom/html/res/adm/pages/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/</targetdir>
+<categoryname>graphic file</categoryname>
+<description>graphical icons used in submenus</description>
+<filenames>
+aboutme.png;
+addClickerInfoFile.png;
+anonsurveythreshold.png;
+bubblesheet.png;
+ccatconf.png;
+ccat-22x22.png;
+chat.png;
+comblock.png;
+contact-new.png;
+contact-new-22x22.png;
+coprplot.png;
+crsnew.png;
+dialog-information.png;
+docs-22x22.png;
+document-open.png;
+document-properties.png;
+download_sub.png;
+dropbox.png;
+dump.png;
+edit-copy.png;
+edit-find-replace.png;
+edit-find.png;
+edit-mode-22x22.png;
+edit-redo.png;
+edit-redo-22x22.png;
+edit-select-all.png;
+edit-undo.png;
+edit-undo-22x22.png;
+emblem-photos.png;
+emblem-readonly.png;
+emblem-system.png;
+extres.png;
+folder-new.png;
+folder-new-22x22.png;
+format-justify-fill.png;
+fromfile.png;
+grade_PageFolder.png;
+grade_students.png;
+grading_table.png;
+groupportfolio.png;
+groupportfolioquota.png;
+grp_add.png;
+grp_settings.png;
+grp_tools.png;
+ims.png;
+imsexport.png;
+link-new-22x22.png;
+list-add.png;
+list-add-22x22.png;
+log.png;
+mail-message-new.png;
+mail-message-new-22x22.png;
+mail-reply-all.png;
+mail-reply-sender.png;
+messalog.png;
+move-22x22.png;
+myaboutme.png;
+navigation.png;
+network-workgroup.png;
+page.png;
+preferences-desktop-font.png;
+preferences-desktop-locale.png;
+preferences-desktop-remote-desktop.png;
+preferences-desktop-theme.png;
+preferences-desktop-wallpaper.png;
+preferences-system-windows.png;
+rcrs-22x22.png;
+receipt_number.png;
+recover.png;
+remotecontrol.png;
+resversion.png;
+role_hotlist-22x22.png;
+rsrv-22x22.png;
+save-22x22.png;
+scoreupfrm.png;
+selfenrl-queue.png;
+selfenrl-queue-22x22.png;
+sequence.png;
+simple.png;
+simpprob.png;
+start-here.png;
+start-here-22x22.png;
+subtimpl.png;
+syllabus.png;
+symbs.png;
+system-lock-screen.png;
+system-users.png;
+timer.png;
+trck-22x22.png;
+ungrade_sub.png;
+uplcrs.png;
+uploadscores.png;
+verify.png;
+view-mode-22x22.png;
+wishlist.png;
+wishlist-link.png;
+wishlist-link-lighter.png;
 </filenames>
 </fileglob>
 <file>
-<source>loncom/html/res/adm/pages/imgmaps.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/imgmaps.html</target>
+<source>loncom/html/res/adm/pages/math_example.tex</source>
+<target dist='default'>home/httpd/html/res/adm/pages/math_example.tex</target>
 <categoryname>interface file</categoryname>
 <description>
-image maps for the LON-CAPA remote control
+ file with an example math equation in it.
 </description>
 </file>
 <file>
@@ -3025,21 +7796,14 @@ image maps for the LON-CAPA remote contr
 welcoming page to the LON-CAPA system upon login
 </description>
 </file>
-<file>
-<source>loncom/html/res/adm/pages/menu.html</source>
-<target dist='default'>home/httpd/html/res/adm/pages/menu.html</target>
-<categoryname>interface file</categoryname>
-<description>
-renders the HTML (including image maps) for the LON-CAPA remote control
-</description>
-</file>
 <fileglob>
 <glob>*.gif</glob>
 <sourcedir>loncom/html/res/adm/pages/indexericons/</sourcedir>
-<targetdir dist='3039'>home/httpd/html/res/adm/pages/indexericons/</targetdir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/indexericons/
+</targetdir>
 <categoryname>graphic file</categoryname>
 <description>
-icons used for the bookmark portion of the LON-CAPA user interface
+icons used for directory indexing and login screen
 </description>
 <filenames>
 a.gif;
@@ -3134,68 +7898,34 @@ world2.gif
 </filenames>
 </fileglob>
 <fileglob>
-<glob>*.gif</glob>
-<sourcedir>loncom/html/res/adm/pages/bookmarkmenu/</sourcedir>
-<targetdir dist='default'>home/httpd/html/res/adm/pages/bookmarkmenu/
-</targetdir>
-<categoryname>graphic file</categoryname>
-<description>
-icons used for directory indexing and login screen
-</description>
-<filenames>
-folder_anim.gif;
-folder_close.gif;
-folder_drag.gif;
-folder_new.gif;
-folder_open.gif;
-folder_pointer_closed.gif;
-folder_pointer_opened.gif;
-folder_static.gif;
-folder_trash.gif;
-folder_trash_hover.gif;
-left_bar.gif;
-link.gif;
-link_anim.gif;
-link_drag.gif;
-ll_corner.gif;
-lower_bar.gif;
-lr_corner.gif;
-pix.gif;
-right_bar.gif;
-toolbar_bg.gif;
-ul_corner.gif;
-upper_bar.gif;
-ur_corner.gif
-</filenames>
-</fileglob>
-<fileglob>
-<glob>*.html</glob>
-<sourcedir>loncom/html/res/adm/pages/bookmarkmenu/</sourcedir>
-<targetdir dist='default'>home/httpd/html/res/adm/pages/bookmarkmenu/
-</targetdir>
+<glob>*.*</glob>
+<sourcedir>loncom/html/res/adm/pages/reactionresponse/</sourcedir>
+<targetdir dist='default'>home/httpd/html/res/adm/pages/reactionresponse/</targetdir>
 <categoryname>interface file</categoryname>
 <description>
-associated with the frameset scheme of displaying bookmarks
+Associated file for answering reactionresponse style questions
 </description>
 <filenames>
-bookmarkmenu_toolbar.html;
-blank.html;
-closechildren.html
+reaction_editor.html;
+reaction_frame.html;
+reaction_help.html;
+reaction_viewer.html;
+reaction_window.html
 </filenames>
 </fileglob>
 <file>
-<source>loncom/html/res/adm/pages/bookmarkmenu/bookmarklib.js</source>
-<target dist='default'>
-home/httpd/html/res/adm/pages/bookmarkmenu/bookmarklib.js</target>
-<categoryname>interface file</categoryname>
+<source dist='default'>loncom/build/CHECKRPMS</source>
+<target dist='default'>usr/local/loncapa/bin/CHECKRPMS</target>
+<categoryname>system script</categoryname>
 <description>
-javascript for handling client-side interactions with bookmark interface
+Checks if RPMs need updating with yum, you, rug, up2date or check-rpms depending on distribution.
 </description>
+<status>tested/documented/beta</status>
 </file>
 <file>
 <source>loncom/build/check-rpms</source>
-<target dist='default'>usr/local/bin/check-rpms</target>
-<categoryname>root script</categoryname>
+<target dist='default'>usr/local/loncapa/bin/check-rpms</target>
+<categoryname>system script</categoryname>
 <description>
 compare installed rpms with up-to-date distribution
 </description>
@@ -3222,8 +7952,8 @@ echo 'manifying check-rpms'
 <categoryname>doc</categoryname>
 <description>POD-derived page for check-rpms</description>
 <build trigger='always run'>
-loncom/build/pod2html.sh check-rpms &gt; ../../doc/scripts/check-rpms.html &amp;&amp; \
-echo 'pod2html checkrpms'
+loncom/build/pod2html.sh check-rpms &gt; ../../doc/scripts/check-rpms.html \
+&amp;&amp; echo 'pod2html checkrpms'
 </build>
 <status>works/unverified</status>
 <dependencies>
@@ -3232,25 +7962,43 @@ echo 'pod2html checkrpms'
 </file>
 <file>
 <source>loncom/build/loncaparestoreconfigurations</source>
-<target dist='default'>usr/sbin/loncaparestoreconfigurations</target>
+<target dist='default'>usr/local/loncapa/sbin/loncaparestoreconfigurations
+</target>
 <categoryname>script</categoryname>
 <description>
-restores .rpmsave files after a LON-CAPA-base upgrade
+Updates .lpmlnew files with previous settings.  Also supports alternative
+schemes of settings-updating and file-overwriting.
 </description>
-<status>deprecated</status>
+<status>works/unverified</status>
 </file>
 <file>
-<source>loncom/cron/loncapa</source>
-<target dist='default'>etc/cron.d/loncapa</target>
-<categoryname>static conf</categoryname>
-<description>
-file that specifies periodic processes to run for the LON-CAPA machine
-</description>
+  <source>loncom/cron/loncapa.built</source>
+  <target dist='default'>etc/cron.d/loncapa</target>
+  <categoryname>conf</categoryname>
+  <description>
+    file that specifies periodic processes to run for the LON-CAPA machine
+  </description>
+  <build trigger='always run'>
+loncom/cron/preserve_local_loncapa_cron
+  </build>
+  <dependencies>
+loncapa;
+preserve_local_loncapa_cron
+  </dependencies>
+</file>
+<file>
+  <source>loncom/cron/loncapa</source>
+  <target dist='default'>home/httpd/lib/perl/loncapa_cron-std</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Back-up of standard loncapa cron file (the actual file in use: /etc/cron.d/loncapa may contain local modifications).
+  </description>
 </file>
 <file>
 <source>loncom/ntp/step-tickers</source>
-<target dist='default'>etc/ntp/step-tickers</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/ntp_step-tickers
+</target>
+<categoryname>static conf</categoryname>
 <description>
 file that stimulates running of ntpdate upon init.d/xntpd initiation
 </description>
@@ -3279,13 +8027,15 @@ file that allows setuid password privile
 <file>
 <source>loncom/init.d/loncontrol</source>
 <target dist='default'>etc/rc.d/init.d/loncontrol</target>
+<target dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/init.d/loncontrol</target>
 <categoryname>root script</categoryname>
 <description>
 Controls the launching/halting of lonc, lond, and lonsql processes.
 </description>
 </file>
 <link>
-<linkto>etc/rc.d/init.d/loncontrol</linkto>
+<linkto dist='default'>etc/rc.d/init.d/loncontrol</linkto>
+<linkto dist='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>etc/init.d/loncontrol</linkto>
 <target dist='default'>
 etc/rc.d/rc0.d/K05loncontrol;
 etc/rc.d/rc1.d/K05loncontrol;
@@ -3295,18 +8045,385 @@ etc/rc.d/rc4.d/S95loncontrol;
 etc/rc.d/rc5.d/S95loncontrol;
 etc/rc.d/rc6.d/K05loncontrol
 </target>
+<target='suse9.2 suse9.3 sles9 sles10 sles11 suse10.1 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3'>
+etc/rc.d/rc0.d/K05loncontrol;
+etc/rc.d/rc1.d/K05loncontrol;
+etc/rc.d/rc2.d/K05loncontrol;
+etc/rc.d/rc3.d/S95loncontrol;
+etc/rc.d/rc5.d/S95loncontrol;
+etc/rc.d/rc6.d/K05loncontrol
+</target>
+<target dist='debian5 debian6 ubuntu6 ubuntu8 ubuntu10 ubuntu12'>
+etc/rc0.d/K05loncontrol;
+etc/rc1.d/K05loncontrol;
+etc/rc2.d/S95loncontrol;
+etc/rc3.d/S95loncontrol;
+etc/rc4.d/S95loncontrol;
+etc/rc5.d/S95loncontrol;
+etc/rc6.d/K05loncontrol
+</target>
 <categoryname>symbolic link</categoryname>
 <description>
-symbolic links to /etc/rc.d/init.d/loncontrol for run-levels</description>
+symbolic links to /etc/rc.d/init.d/loncontrol (redhat/fedora) or /etc/init.d/loncontrol (suse/debian) for run-levels
+</description>
 </link>
+
+<file dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 sles9 sles10 sles11">
+  <source>loncom/init.d/loncontrol</source>
+  <target>etc/rc.d/</target>
+  <description>
+    setup loncontrol to run at boot
+  </description>
+  <installscript dist="suse9.2 suse9.3 suse10.2 suse10.3 suse11.1 suse11.2 suse11.3 suse11.4 suse12.1 suse12.2 suse12.3 sles9 sles10 sles11">
+-c 'chkconfig --del loncontrol;chkconfig loncontrol 35;chkconfig --list loncontrol'
+  </installscript>
+  <dependencies>
+loncom/init.d/loncontrol
+  </dependencies>
+</file>
+
+<file>
+  <source>doc/latex/utf8.def</source>
+  <target dist='default'>usr/local/loncapa/doc/utf8.def</target>
+  <target dist='rhes4'>usr/share/texmf/tex/latex/base/utf8.def</target>
+  <categoryname>system file</categoryname>
+  <description>
+   utf8 definitions for LaTeX
+  </description>
+</file>
+
+<file>
+  <source>doc/latex/utf8enc.dfu</source>
+  <target dist='default'>usr/local/loncapa/doc/utf8enc.dfu</target>
+  <target dist='rhes4'>usr/share/texmf/tex/latex/base/utf8enc.dfu</target>
+  <categoryname>system file</categoryname>
+  <description>
+   utf8 declarations for LaTeX
+  </description>
+</file>
+
 <file>
 <source>loncom/atalk/config</source>
-<target dist='default'>etc/atalk/config</target>
-<categoryname>conf</categoryname>
+<target dist='default'>usr/local/loncapa/doc/conf_examples/config</target>
+<categoryname>static conf</categoryname>
 <description>
 configuration file to make LON-CAPA server file space accessible to
 Appleshares access (Macintosh)
 </description>
 </file>
+<file>
+  <source>loncom/interface/loncss.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/loncss.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Generates standard LON-CAPA CSS
+  </description>
+</file>
+<file>
+  <source>loncom/LONCAPA.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Some basic Lon-CAPA functionality
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonnotify.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonnotify.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for Domain Coordinators to (a) send broadcast e-mail to groups 
+of users, and (b) to display e-mail of this type sent in the past.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonhelpmenu.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonhelpmenu.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Creates a multipage help screen to help users out.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonsupportreq.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonsupportreq.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler to make it easy for users to send a request to the helpdesk
+  </description>
+</file>
+<file>
+  <source>loncom/interface/courseclassifier.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/courseclassifier.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Routines used in generation of dynamic Year, Semester, Departmemt and Course Number select boxes from institutional course codes.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/coursecatalog.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/coursecatalog.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Display catalog of courses with institutional codes, filtered by domain-specific categories (e.g., year, semester, department etc.).
+  </description>
+</file>
+<file>
+  <source>loncom/interface/resetpw.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/resetpw.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    A user with an internally authenticated account and a recorded e-mail address can use a two-step process to set a new password via a token sent to his/her e-mail address.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/createaccount.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/createaccount.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    An e-mail address can be used to create a LON-CAPA account via a two-step process employing a token sent to the e-mail address (the address will be the username). Alternatively, an institutional login can be used (after successful authentication) to create a corresponding LON-CAPA account, if one is missing.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonmodifycourse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonmodifycourse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface to modifying a course's internal ENV values for automated
+    enrollment
+  </description>
+</file>
+<file>
+  <source>loncom/interface/domainprefs.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/domainprefs.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Interface for modifying domain configuration
+  </description>
+</file>
+<file>
+  <source>loncom/interface/domainstatus.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/domainstatus.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for generation of a menu of links to server status utilities
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonconfigsettings.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonconfigsettings.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Common routines for generating menus to set default configuration settings -  
+   for a domain or for a course.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpdfupload.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpdfupload.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Interface to upload a PDF form containing responses to problems entered offline using a PDF reader for storage as submissions.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonpopulate.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonpopulate.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for configuring automated enrollment
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/Enrollment.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/Enrollment.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for automated enrollment
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/localenroll.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localenroll.pm</target>
+  <categoryname>conf</categoryname>
+  <description>
+    Local handler for automated enrollment.
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/localenroll.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localenroll-std.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Local handler for automated enrollment, standard version.
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/Autoenroll.pl</source>
+  <target dist='default'>home/httpd/perl/Autoenroll.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script to perform automated enrollments from institutional classlists.
+  </description>
+</file>
+<file>
+  <source>loncom/enrollment/Autoupdate.pl</source>
+  <target dist='default'>home/httpd/perl/Autoupdate.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script to perform automated updates of names for existing users in the domain using data provided by the domain's administrative information service.
+  </description>
+</file>
+<file>
+  <source>loncom/auth/localstudentphoto.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localstudentphoto.pm</target>
+  <categoryname>conf</categoryname>
+  <description>
+    Local handler for automated enrollment.
+  </description>
+</file>
+<file>
+  <source>loncom/auth/localstudentphoto.pm</source>
+  <target dist='default'>home/httpd/lib/perl/localstudentphoto-std.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Local handler for automated enrollment, standard version.
+  </description>
+</file>
+<file>
+  <source>loncom/automation/batchcreatecourse.pm</source>
+  <target dist='default'>home/httpd/lib/perl/LONCAPA/batchcreatecourse.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Handler for batch creation of courses.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonblockingmenu.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonblockingmenu.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+   Handler for configuration of blocking of access to collaborative tools and/or
+resources for the duration of an exam.
+  </description>
+</file>
+<file>
+  <source>loncom/interface/lonblockingstatus.pm</source>
+  <target dist='default'>home/httpd/lib/perl/Apache/lonblockingstatus.pm</target>
+  <categoryname>handler</categoryname>
+  <description>
+    Used for displaying the communication blocking status.
+  </description>
+</file>
+<file>
+<source>loncom/interface/lonwishlist.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwishlist.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Utilities to modify the wishlist (add new links and folders,
+edit, move, sort or delete existing links and folders).
+Links from the wishlist can be imported into courses.</description>
+<status>works/unverified</status>
+</file>
+<file>
+<source>loncom/interface/lonwishlistdisplay.pm</source>
+<target dist='default'>home/httpd/lib/perl/Apache/lonwishlistdisplay.pm</target>
+<categoryname>handler</categoryname>
+<description>
+Module for displaying the wishlist.</description>
+<status>works/unverified</status>
+</file>
+<file>
+  <source>loncom/automation/Autocreate.pl</source>Autocreate.pl
+  <target dist='default'>home/httpd/perl/Autocreate.pl</target>
+  <categoryname>script</categoryname>
+  <description>
+    Script for automated course creation.
+  </description>
+</file>
+<fileglob>
+    <glob>*.pl</glob>
+    <sourcedir>loncom/debugging_tools/</sourcedir>
+    <targetdir dist='default'>home/httpd/perl/debug/</targetdir>
+    <categoryname>script</categoryname>
+    <description>
+      Tools for helping debug Lon-CAPA
+    </description>
+<filenames>
+activity_to_accesscount.pl;
+clean_db.pl;
+db_copy.pl;
+dump_db.pl;
+escape.pl;
+excise_from_db.pl;
+getties.pl;
+login_count.pl;
+modify_config_files.pl;
+move_construction_spaces.pl;
+parse_scantron.pl;
+rebuild_db_from_hist.pl;
+seed_accesscount.pl;
+stress.pl;
+testkerberos.pl;
+unescape.pl;
+user_login_count.pl;
+</filenames>
+</fileglob>
+<fileglob>
+    <glob>*.*</glob>
+    <sourcedir>loncom/debugging_tools/compiled/</sourcedir>
+    <targetdir dist='default'>home/httpd/perl/debug/</targetdir>
+    <categoryname>script</categoryname>
+    <description>
+      Binary tools for LON-CAPA
+    </description>
+<filenames>
+create_db_dynamic_64_so.3;
+</filenames>
+</fileglob>
+<file>
+<source>loncom/debugging_tools/compiled/create_db_dynamic</source>
+<target dist='default'>home/httpd/perl/debug/create_db_dynamic</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/compiled/create_db_dynamic_64</source>
+<target dist='default'>home/httpd/perl/debug/create_db_dynamic_64</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
+<source>loncom/debugging_tools/compiled/dump_db_static_32</source>
+<target dist='default'>home/httpd/perl/debug/dump_db_static_32</target>
+<categoryname>script</categoryname>
+<description>
+Binary tool for LON-CAPA
+</description>
+</file>
+<file>
+<source>loncom/build/distprobe</source>
+<target dist='default'>home/httpd/perl/distprobe</target>
+<categoryname>script</categoryname>
+<description>
+for probing operating system flavor and version
+</description>
+<note>
+</note>
+</file>
+<file>
+<source>loncom/clusteradmin</source>
+<target dist='default'>home/httpd/perl/manage_dns/clusteradmin</target>
+<categoryname>root script</categoryname>
+<description>
+Script to update cluster tables: dns_hosts.tab and dns_domain.tab
+on a LON-CAPA DNS server.  
+</description>
+<status>works/unverified</status>
+</file>
 </files>
 </lpml>